agentic-qe 3.8.0 → 3.8.2

package/dist/init/settings-merge.js

@@ -87,8 +87,9 @@ export function generateAqeEnvVars(config) {
  * Generate v3-specific settings sections for settings.json.
  * These sections enable the self-learning system, status line, and permissions.
  */
-export function generateV3SettingsSections(config) {
+export function generateV3SettingsSections(config, projectRoot) {
     const domains = config.domains?.enabled || [];
+    const fallback = projectRoot ? `echo ${JSON.stringify(projectRoot)}` : 'pwd';
     return {
         aqe: {
             version: config.version ?? '3.0.0',
@@ -97,21 +98,20 @@ export function generateV3SettingsSections(config) {
         },
         statusLine: {
             type: 'command',
-            command: 'node "$(git rev-parse --show-toplevel 2>/dev/null || pwd)/.claude/helpers/statusline-v3.cjs" 2>/dev/null || echo "▊ Agentic QE v3"',
+            command: `node "$(git rev-parse --show-toplevel 2>/dev/null || ${fallback})/.claude/helpers/statusline-v3.cjs" 2>/dev/null || echo "▊ Agentic QE v3"`,
             refreshMs: 5000,
             enabled: true,
         },
-        permissions: {
-            allow: [
-                'Bash(npx claude-flow:*)',
-                'Bash(npx @claude-flow/cli:*)',
-                'mcp__claude-flow__:*',
-                'mcp__agentic_qe__*',
-            ],
-            deny: [
-                'Bash(rm -rf /)',
-            ],
-        },
+        // permissions are union-merged in 07-hooks.ts — not set here to avoid overwriting user entries (#362)
+        _aqePermissions: [
+            'Bash(npx ruflo:*)',
+            'Bash(npx @ruflo/cli:*)',
+            'Bash(npx claude-flow:*)',
+            'Bash(npx @claude-flow/cli:*)',
+            'mcp__ruflo__:*',
+            'mcp__claude-flow__:*',
+            'mcp__agentic-qe__*',
+        ],
         includeCoAuthoredBy: true,
         v3Configuration: {
             domains: {

package/dist/mcp/bundle.js

@@ -114414,8 +114414,9 @@ var init_coordinator12 = __esm({
        * QESONA (Self-Optimizing Neural Architecture) for pattern learning
        * Provides <0.05ms pattern adaptation via @ruvector/sona
        * Now uses PersistentSONAEngine to survive restarts
+       * Nullable: init may fail (e.g. during `aqe init`) — coordinator degrades gracefully
        */
-      sona;
+      sona = null;
       /**
        * DreamScheduler for offline pattern consolidation and insight generation
        * Wraps DreamEngine with automatic scheduling and trigger support
@@ -114427,7 +114428,7 @@ var init_coordinator12 = __esm({
       /**
        * Initialize the coordinator.
        * CQ-002: Domain-specific initialization
-       * Throws if QESONA fails to initialize.
+       * SONA init failure is non-fatal — coordinator degrades gracefully (#359).
        */
       async onInitialize() {
         try {
@@ -114441,7 +114442,8 @@ var init_coordinator12 = __esm({
           console.log("[LearningOptimizationCoordinator] PersistentSONAEngine initialized for pattern learning");
         } catch (error) {
           console.error("[LearningOptimizationCoordinator] Failed to initialize PersistentSONAEngine:", error);
-          throw error;
+          console.warn("[LearningOptimizationCoordinator] Continuing without SONA pattern persistence");
+          this.sona = null;
         }
         if (this.config.enableDreamScheduler) {
           try {
@@ -114811,6 +114813,7 @@ var init_coordinator12 = __esm({
        */
       learnPattern(state2, action, outcome, patternType, domain, metadata) {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         return this.sona.createPattern(state2, action, outcome, patternType, domain, metadata);
       }
       /**
@@ -114823,6 +114826,16 @@ var init_coordinator12 = __esm({
           );
         }
       }
+      /**
+       * Ensure SONA engine is available (may be null if init failed gracefully).
+       */
+      ensureSONAAvailable() {
+        if (!this.sona) {
+          throw new Error(
+            "[LearningOptimizationCoordinator] SONA engine is not available. Pattern persistence failed during initialization."
+          );
+        }
+      }
       /**
        * Adapt a pattern based on current context using QESONA.
        * Leverages @ruvector/sona's HNSW-indexed pattern matching for <0.05ms adaptation.
@@ -114835,6 +114848,7 @@ var init_coordinator12 = __esm({
        */
       async adaptPattern(state2, patternType, domain) {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         return this.sona.adaptPattern(state2, patternType, domain);
       }
       /**
@@ -114845,6 +114859,7 @@ var init_coordinator12 = __esm({
        */
       getSONAStats() {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         return this.sona.getStats();
       }
       /**
@@ -114855,6 +114870,7 @@ var init_coordinator12 = __esm({
        */
       getSONAPatterns() {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         return this.sona.getAllPatterns();
       }
       /**
@@ -114866,6 +114882,7 @@ var init_coordinator12 = __esm({
        */
       getSONAPatternsByType(type) {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         return this.sona.getPatternsByType(type);
       }
       /**
@@ -114877,6 +114894,7 @@ var init_coordinator12 = __esm({
        */
       getSONAPatternsByDomain(domain) {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         return this.sona.getPatternsByDomain(domain);
       }
       /**
@@ -114891,6 +114909,7 @@ var init_coordinator12 = __esm({
        */
       updateSONAPattern(patternId, success, quality) {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         return this.sona.updatePattern(patternId, success, quality);
       }
       /**
@@ -114902,6 +114921,7 @@ var init_coordinator12 = __esm({
        */
       forceSONALearning() {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         return this.sona.forceLearn();
       }
       /**
@@ -114910,7 +114930,7 @@ var init_coordinator12 = __esm({
        * @returns True if SONA is available
        */
       isSONAAvailable() {
-        return this.initialized;
+        return this.initialized && this.sona !== null;
       }
       /**
        * Export all QESONA patterns for persistence or transfer.
@@ -114920,6 +114940,7 @@ var init_coordinator12 = __esm({
        */
       exportSONAPatterns() {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         return this.sona.exportPatterns();
       }
       /**
@@ -114931,6 +114952,7 @@ var init_coordinator12 = __esm({
        */
       importSONAPatterns(patterns) {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         this.sona.importPatterns(patterns);
       }
       /**
@@ -114942,6 +114964,7 @@ var init_coordinator12 = __esm({
        */
       async verifySONAPerformance(iterations = 100) {
         this.ensureInitialized();
+        this.ensureSONAAvailable();
         return this.sona.verifyPerformance(iterations);
       }
       // ============================================================================
@@ -115668,6 +115691,8 @@ var init_plugin12 = __esm({
        */
       getAPI() {
         const api = {
+          // Availability check
+          isSONAAvailable: () => this.coordinator?.isSONAAvailable() ?? false,
           // Coordinator methods
           runLearningCycle: this.runLearningCycle.bind(this),
           optimizeAllStrategies: this.optimizeAllStrategies.bind(this),
@@ -150959,7 +150984,7 @@ function checkMCPConfig(projectRoot) {
   if (existsSync21(mcpJsonPath)) {
     try {
       const config = safeJsonParse(readFileSync16(mcpJsonPath, "utf-8"));
-      if (config.mcpServers?.["claude-flow"]) {
+      if (config.mcpServers?.["ruflo"] || config.mcpServers?.["claude-flow"]) {
         return { available: true, method: "mcp-config" };
       }
     } catch {
@@ -150970,7 +150995,7 @@ function checkMCPConfig(projectRoot) {
     try {
       const settings = safeJsonParse(readFileSync16(settingsPath, "utf-8"));
       const servers = settings.mcpServers || settings.mcp?.servers || {};
-      if (servers["claude-flow"] || servers["@anthropic/claude-flow"]) {
+      if (servers["ruflo"] || servers["claude-flow"] || servers["@anthropic/claude-flow"]) {
         return { available: true, method: "mcp-config" };
       }
     } catch {
@@ -150984,7 +151009,7 @@ function checkPackageJson(projectRoot) {
   try {
     const pkg2 = safeJsonParse(readFileSync16(packageJsonPath, "utf-8"));
     const deps = { ...pkg2.dependencies, ...pkg2.devDependencies };
-    if (deps["@claude-flow/cli"] || deps["claude-flow"]) {
+    if (deps["ruflo"] || deps["@claude-flow/cli"] || deps["claude-flow"]) {
       return { available: true, method: "npm-dependency" };
     }
   } catch {
@@ -150992,20 +151017,32 @@ function checkPackageJson(projectRoot) {
   return null;
 }
 function checkLocalBinary(projectRoot) {
-  try {
-    const result = execSync7("npx --no-install @claude-flow/cli --version", {
-      encoding: "utf-8",
-      timeout: 5e3,
-      cwd: projectRoot,
-      stdio: ["pipe", "pipe", "pipe"]
-      // suppress stderr noise
-    });
-    const version2 = result.trim().match(/\d+\.\d+\.\d+[\w.-]*/)?.[0];
-    return { available: true, method: "npx-cached", version: version2 };
-  } catch {
+  for (const pkg2 of ["ruflo", "@claude-flow/cli"]) {
+    try {
+      const result = execSync7(`npx --no-install ${pkg2} --version`, {
+        encoding: "utf-8",
+        timeout: 5e3,
+        cwd: projectRoot,
+        stdio: ["pipe", "pipe", "pipe"]
+        // suppress stderr noise
+      });
+      const version2 = result.trim().match(/\d+\.\d+\.\d+[\w.-]*/)?.[0];
+      return { available: true, method: "npx-cached", version: version2 };
+    } catch {
+    }
   }
   return null;
 }
+function resolveCliPackage() {
+  for (const pkg2 of ["ruflo", "@claude-flow/cli"]) {
+    try {
+      __require.resolve(`${pkg2}/package.json`);
+      return pkg2;
+    } catch {
+    }
+  }
+  return "ruflo";
+}
 var cachedResult, cacheTimestamp, CACHE_TTL_MS2;
 var init_detect = __esm({
   "src/adapters/claude-flow/detect.ts"() {
@@ -151019,11 +151056,12 @@ var init_detect = __esm({
 
 // src/adapters/claude-flow/trajectory-bridge.ts
 import { randomUUID as randomUUID19 } from "node:crypto";
-var TrajectoryBridge;
+var cliPkg, TrajectoryBridge;
 var init_trajectory_bridge = __esm({
   "src/adapters/claude-flow/trajectory-bridge.ts"() {
     "use strict";
     init_detect();
+    cliPkg = resolveCliPackage();
     TrajectoryBridge = class {
       constructor(options) {
         this.options = options;
@@ -151050,7 +151088,7 @@ var init_trajectory_bridge = __esm({
         if (this.claudeFlowAvailable) {
           try {
             const { execFileSync: execFileSync2 } = await import("child_process");
-            const args = ["--no-install", "@claude-flow/cli", "hooks", "intelligence", "trajectory-start", "--task", task];
+            const args = ["--no-install", cliPkg, "hooks", "intelligence", "trajectory-start", "--task", task];
             if (agent) {
               args.push("--agent", agent);
             }
@@ -151083,7 +151121,7 @@ var init_trajectory_bridge = __esm({
         if (this.claudeFlowAvailable) {
           try {
             const { execFileSync: execFileSync2 } = await import("child_process");
-            const args = ["--no-install", "@claude-flow/cli", "hooks", "intelligence", "trajectory-step", "--trajectory-id", trajectoryId, "--action", action];
+            const args = ["--no-install", cliPkg, "hooks", "intelligence", "trajectory-step", "--trajectory-id", trajectoryId, "--action", action];
             if (result) {
               args.push("--result", result);
             }
@@ -151118,7 +151156,7 @@ var init_trajectory_bridge = __esm({
         if (this.claudeFlowAvailable) {
           try {
             const { execFileSync: execFileSync2 } = await import("child_process");
-            const args = ["--no-install", "@claude-flow/cli", "hooks", "intelligence", "trajectory-end", "--trajectory-id", trajectoryId, "--success", String(success)];
+            const args = ["--no-install", cliPkg, "hooks", "intelligence", "trajectory-end", "--trajectory-id", trajectoryId, "--success", String(success)];
             if (feedback) {
               args.push("--feedback", feedback);
             }
@@ -151205,11 +151243,12 @@ var init_trajectory_bridge = __esm({
 });
 
 // src/adapters/claude-flow/model-router-bridge.ts
-var COMPLEXITY_INDICATORS, ModelRouterBridge;
+var cliPkg2, COMPLEXITY_INDICATORS, ModelRouterBridge;
 var init_model_router_bridge = __esm({
   "src/adapters/claude-flow/model-router-bridge.ts"() {
     "use strict";
     init_detect();
+    cliPkg2 = resolveCliPackage();
     COMPLEXITY_INDICATORS = {
       low: [
         /simple/i,
@@ -151264,7 +151303,7 @@ var init_model_router_bridge = __esm({
             const { execFileSync: execFileSync2 } = await import("child_process");
             const result = execFileSync2(
               "npx",
-              ["--no-install", "@claude-flow/cli", "hooks", "model-route", "--task", task],
+              ["--no-install", cliPkg2, "hooks", "model-route", "--task", task],
               { encoding: "utf-8", timeout: 1e4, cwd: this.options.projectRoot }
             );
             const modelMatch = result.match(/model[:\s]+["']?(haiku|sonnet|opus)/i);
@@ -151296,7 +151335,7 @@ var init_model_router_bridge = __esm({
             const { execFileSync: execFileSync2 } = await import("child_process");
             execFileSync2(
               "npx",
-              ["--no-install", "@claude-flow/cli", "hooks", "model-outcome", "--task", outcome.task, "--model", outcome.model, "--outcome", outcome.outcome],
+              ["--no-install", cliPkg2, "hooks", "model-outcome", "--task", outcome.task, "--model", outcome.model, "--outcome", outcome.outcome],
               { encoding: "utf-8", timeout: 1e4, cwd: this.options.projectRoot }
             );
           } catch (error) {
@@ -151380,13 +151419,14 @@ var init_model_router_bridge = __esm({
 });
 
 // src/adapters/claude-flow/pretrain-bridge.ts
-var PretrainBridge;
+var cliPkg3, PretrainBridge;
 var init_pretrain_bridge = __esm({
   "src/adapters/claude-flow/pretrain-bridge.ts"() {
     "use strict";
     init_detect();
     init_safe_json();
     init_error_utils();
+    cliPkg3 = resolveCliPackage();
     PretrainBridge = class {
       constructor(options) {
         this.options = options;
@@ -151420,7 +151460,7 @@ var init_pretrain_bridge = __esm({
             const { execFileSync: execFileSync2 } = await import("child_process");
             const result = execFileSync2(
               "npx",
-              ["--no-install", "@claude-flow/cli", "hooks", "pretrain", "--path", targetPath, "--depth", depth],
+              ["--no-install", cliPkg3, "hooks", "pretrain", "--path", targetPath, "--depth", depth],
               { encoding: "utf-8", timeout: 12e4, cwd: this.options.projectRoot }
             );
             try {
@@ -151456,7 +151496,7 @@ var init_pretrain_bridge = __esm({
             const { execFileSync: execFileSync2 } = await import("child_process");
             const result = execFileSync2(
               "npx",
-              ["--no-install", "@claude-flow/cli", "hooks", "build-agents", "--format", format],
+              ["--no-install", cliPkg3, "hooks", "build-agents", "--format", format],
               { encoding: "utf-8", timeout: 6e4, cwd: this.options.projectRoot }
             );
             try {
@@ -151480,7 +151520,7 @@ var init_pretrain_bridge = __esm({
             const { execFileSync: execFileSync2 } = await import("child_process");
             const result = execFileSync2(
               "npx",
-              ["--no-install", "@claude-flow/cli", "hooks", "transfer", "--source-path", sourcePath, "--min-confidence", String(minConfidence)],
+              ["--no-install", cliPkg3, "hooks", "transfer", "--source-path", sourcePath, "--min-confidence", String(minConfidence)],
               { encoding: "utf-8", timeout: 6e4, cwd: this.options.projectRoot }
             );
             const transferredMatch = result.match(/transferred[:\s]+(\d+)/i);
@@ -181310,7 +181350,7 @@ async function handleAQEHealth() {
       success: true,
       data: {
         status: healthStatus,
-        version: true ? "3.8.0" : "3.7.2",
+        version: true ? "3.8.2" : "3.7.2",
         loadedDomains: domainCount,
         memory: memoryStats,
         hnsw: hnswStats,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agentic-qe",
-  "version": "3.8.0",
+  "version": "3.8.2",
   "description": "Agentic Quality Engineering V3 - Domain-Driven Design Architecture with 13 Bounded Contexts, O(log n) coverage analysis, ReasoningBank learning, 60 specialized QE agents, mathematical Coherence verification, deep Claude Flow integration",
   "type": "module",
   "main": "./dist/index.js",
@@ -74,6 +74,7 @@
     "test:coverage": "vitest run --coverage --exclude='**/browser/**' --exclude='**/*.e2e.test.ts' --exclude='**/integration/browser/**' --exclude='**/browser-swarm-coordinator.test.ts' --exclude='**/mcp/handlers/domain-handlers.test.ts'",
     "test:perf": "vitest bench tests/performance/",
     "test:journeys": "npm test -- --run tests/integration/",
+    "test:journeys:ci": "vitest run tests/integration/ --exclude='**/browser/**' --exclude='**/browser-integration/**' --exclude='**/integration/mcp/**' --exclude='**/integration/sync/**' --exclude='**/integration/learning/**' --exclude='**/integration/domains/**' --exclude='**/integration/llm/**' --exclude='**/integration/n8n/**' --exclude='**/*.e2e.test.ts'",
     "test:watch": "vitest",
     "performance:gate": "npx tsx src/performance/run-gates.ts",
     "test:integration:browser": "VIBIUM_REAL_TESTS=true vitest run tests/integrations/vibium/vibium-real.test.ts",
@@ -127,7 +128,7 @@
   "author": "AQE Development Team",
   "license": "MIT",
   "dependencies": {
-    "@claude-flow/guidance": "^3.0.0-alpha.1",
+    "@claude-flow/guidance": "3.0.0-alpha.1",
     "@faker-js/faker": "^10.2.0",
     "@ruvector/attention": "0.1.3",
     "@ruvector/gnn": "0.1.19",
@@ -154,7 +155,7 @@
     "yaml": "^2.8.2"
   },
   "optionalDependencies": {
-    "@claude-flow/browser": "^3.0.0-alpha.1",
+    "@claude-flow/browser": "3.0.0-alpha.1",
     "@ruvector/attention-darwin-arm64": "0.1.3",
     "@ruvector/attention-darwin-x64": "0.1.3",
     "@ruvector/attention-linux-arm64-gnu": "0.1.3",
@@ -230,6 +231,10 @@
     ".claude/skills",
     ".claude/commands",
     ".claude/helpers",
+    ".opencode/agents",
+    ".opencode/skills",
+    ".opencode/tools",
+    ".opencode/permissions.yaml",
     "README.md",
     "CHANGELOG.md",
     "LICENSE"