agentic-qe 3.7.19 → 3.7.20

package/.claude/skills/skills-manifest.json

@@ -932,7 +932,7 @@
   },
   "metadata": {
     "generatedBy": "Agentic QE Fleet",
-    "fleetVersion": "3.7.18",
+    "fleetVersion": "3.7.20",
     "manifestVersion": "1.3.0",
     "lastUpdated": "2026-02-04T00:00:00.000Z",
     "contributors": [

package/CHANGELOG.md

@@ -5,6 +5,13 @@ All notable changes to the Agentic QE project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [3.7.20] - 2026-03-12
+
+### Fixed
+
+- **Duplicate brain-checkpoint hooks on re-init** — Running `aqe init --auto` multiple times accumulated 4x copies of brain-checkpoint verify/export hooks in settings.json, potentially blocking tool calls for up to 4 minutes. Added `brain-checkpoint.cjs` and `.claude/helpers/` to the AQE hook detection patterns so `mergeHooksSmart()` correctly deduplicates them. (#344)
+- **Governance time budget blocking requirements_validate and coverage_analyze_sublinear** — The continue-gate's `budgetRemaining.timeMs` was measuring total session elapsed time instead of idle time since last action. After 5+ minutes of normal usage, the WASM gate would return "Budget exhausted: time" even when tools were actively running. Fixed the calculation to reference last action timestamp and increased the default idle timeout from 5 to 15 minutes. (#345)
+
 ## [3.7.18] - 2026-03-11
 
 ### Fixed

package/dist/cli/bundle.js

@@ -49930,8 +49930,8 @@ var DEFAULT_GOVERNANCE_FLAGS = {
     enabled: true,
     maxConsecutiveRetries: 3,
     reworkRatioThreshold: 0.5,
-    idleTimeoutMs: 5 * 60 * 1e3,
-    // 5 minutes
+    idleTimeoutMs: 15 * 60 * 1e3,
+    // 15 minutes
     throttleOnExceed: true
   },
   memoryWriteGate: {
@@ -50066,7 +50066,7 @@ function loadFlagsFromEnv() {
       enabled: env.GOVERNANCE_CONTINUE_GATE !== "false",
       maxConsecutiveRetries: parseInt(env.GOVERNANCE_MAX_RETRIES || "3", 10),
       reworkRatioThreshold: parseFloat(env.GOVERNANCE_REWORK_THRESHOLD || "0.5"),
-      idleTimeoutMs: parseInt(env.GOVERNANCE_IDLE_TIMEOUT || "300000", 10),
+      idleTimeoutMs: parseInt(env.GOVERNANCE_IDLE_TIMEOUT || "900000", 10),
       throttleOnExceed: env.GOVERNANCE_THROTTLE !== "false"
     },
     memoryWriteGate: {
@@ -50390,7 +50390,7 @@ var ContinueGateIntegration = class _ContinueGateIntegration {
           budgetRemaining: {
             tokens: Math.max(0, flags.maxConsecutiveRetries * 10 * 500 - history.length * 500),
             toolCalls: Math.max(0, flags.maxConsecutiveRetries * 10 - history.length),
-            timeMs: Math.max(0, flags.idleTimeoutMs - (history.length > 0 ? Date.now() - history[0].timestamp : 0))
+            timeMs: Math.max(0, flags.idleTimeoutMs - (history.length > 0 ? Date.now() - history[history.length - 1].timestamp : 0))
           },
           recentDecisions: []
         };
@@ -135299,7 +135299,7 @@ var ALL_DOMAINS2 = [
   "enterprise-integration"
 ];
 function getAQEVersion() {
-  return true ? "3.7.19" : "3.0.0";
+  return true ? "3.7.20" : "3.0.0";
 }
 function createDefaultConfig(projectName, projectRoot) {
   return {
@@ -136509,7 +136509,9 @@ var AQE_COMMAND_PATTERNS = [
   /\baqe\b/i,
   /\bagentic-qe\b/i,
   /\bnpx\s+agentic-qe\b/i,
-  /\bnpx\s+@anthropics\/agentic-qe\b/i
+  /\bnpx\s+@anthropics\/agentic-qe\b/i,
+  /brain-checkpoint\.cjs/i,
+  /\.claude\/helpers\//i
 ];
 function isAqeHookEntry(entry) {
   const hookEntry = entry;
@@ -166104,7 +166106,7 @@ async function cleanupAndExit(code = 0) {
   process.exit(code);
 }
 var program = new Command21();
-var VERSION = true ? "3.7.19" : "0.0.0-dev";
+var VERSION = true ? "3.7.20" : "0.0.0-dev";
 program.name("aqe").description("Agentic QE - Domain-Driven Quality Engineering").version(VERSION);
 var registry2 = createCommandRegistry(context, cleanupAndExit, ensureInitialized, ensureInitializedStrict);
 registry2.registerAll(program);

package/dist/governance/continue-gate-integration.js

@@ -153,7 +153,7 @@ export class ContinueGateIntegration {
                     budgetRemaining: {
                         tokens: Math.max(0, (flags.maxConsecutiveRetries * 10 * 500) - (history.length * 500)),
                         toolCalls: Math.max(0, (flags.maxConsecutiveRetries * 10) - history.length),
-                        timeMs: Math.max(0, flags.idleTimeoutMs - (history.length > 0 ? Date.now() - history[0].timestamp : 0)),
+                        timeMs: Math.max(0, flags.idleTimeoutMs - (history.length > 0 ? Date.now() - history[history.length - 1].timestamp : 0)),
                     },
                     recentDecisions: [],
                 };

package/dist/governance/feature-flags.js

@@ -16,7 +16,7 @@ export const DEFAULT_GOVERNANCE_FLAGS = {
         enabled: true,
         maxConsecutiveRetries: 3,
         reworkRatioThreshold: 0.5,
-        idleTimeoutMs: 5 * 60 * 1000, // 5 minutes
+        idleTimeoutMs: 15 * 60 * 1000, // 15 minutes
         throttleOnExceed: true,
     },
     memoryWriteGate: {
@@ -124,7 +124,7 @@ export function loadFlagsFromEnv() {
             enabled: env.GOVERNANCE_CONTINUE_GATE !== 'false',
             maxConsecutiveRetries: parseInt(env.GOVERNANCE_MAX_RETRIES || '3', 10),
             reworkRatioThreshold: parseFloat(env.GOVERNANCE_REWORK_THRESHOLD || '0.5'),
-            idleTimeoutMs: parseInt(env.GOVERNANCE_IDLE_TIMEOUT || '300000', 10),
+            idleTimeoutMs: parseInt(env.GOVERNANCE_IDLE_TIMEOUT || '900000', 10),
             throttleOnExceed: env.GOVERNANCE_THROTTLE !== 'false',
         },
         memoryWriteGate: {

package/dist/init/settings-merge.js

@@ -13,6 +13,8 @@ const AQE_COMMAND_PATTERNS = [
     /\bagentic-qe\b/i,
     /\bnpx\s+agentic-qe\b/i,
     /\bnpx\s+@anthropics\/agentic-qe\b/i,
+    /brain-checkpoint\.cjs/i,
+    /\.claude\/helpers\//i,
 ];
 /**
  * Check if a single hook entry belongs to AQE (any variant).

package/dist/mcp/bundle.js

@@ -33406,7 +33406,7 @@ function loadFlagsFromEnv() {
       enabled: env.GOVERNANCE_CONTINUE_GATE !== "false",
       maxConsecutiveRetries: parseInt(env.GOVERNANCE_MAX_RETRIES || "3", 10),
       reworkRatioThreshold: parseFloat(env.GOVERNANCE_REWORK_THRESHOLD || "0.5"),
-      idleTimeoutMs: parseInt(env.GOVERNANCE_IDLE_TIMEOUT || "300000", 10),
+      idleTimeoutMs: parseInt(env.GOVERNANCE_IDLE_TIMEOUT || "900000", 10),
       throttleOnExceed: env.GOVERNANCE_THROTTLE !== "false"
     },
     memoryWriteGate: {
@@ -33533,8 +33533,8 @@ var init_feature_flags = __esm({
         enabled: true,
         maxConsecutiveRetries: 3,
         reworkRatioThreshold: 0.5,
-        idleTimeoutMs: 5 * 60 * 1e3,
-        // 5 minutes
+        idleTimeoutMs: 15 * 60 * 1e3,
+        // 15 minutes
         throttleOnExceed: true
       },
       memoryWriteGate: {
@@ -33894,7 +33894,7 @@ var init_continue_gate_integration = __esm({
               budgetRemaining: {
                 tokens: Math.max(0, flags.maxConsecutiveRetries * 10 * 500 - history.length * 500),
                 toolCalls: Math.max(0, flags.maxConsecutiveRetries * 10 - history.length),
-                timeMs: Math.max(0, flags.idleTimeoutMs - (history.length > 0 ? Date.now() - history[0].timestamp : 0))
+                timeMs: Math.max(0, flags.idleTimeoutMs - (history.length > 0 ? Date.now() - history[history.length - 1].timestamp : 0))
               },
               recentDecisions: []
             };
@@ -175214,7 +175214,7 @@ async function handleAQEHealth() {
       success: true,
       data: {
         status: healthStatus,
-        version: true ? "3.7.19" : "3.7.2",
+        version: true ? "3.7.20" : "3.7.2",
         loadedDomains: domainCount,
         memory: memoryStats,
         hnsw: hnswStats,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agentic-qe",
-  "version": "3.7.19",
+  "version": "3.7.20",
   "description": "Agentic Quality Engineering V3 - Domain-Driven Design Architecture with 13 Bounded Contexts, O(log n) coverage analysis, ReasoningBank learning, 60 specialized QE agents, mathematical Coherence verification, deep Claude Flow integration",
   "type": "module",
   "main": "./dist/index.js",