npm - agentic-qe - Versions diffs - 3.6.3 → 3.6.5 - Mend

agentic-qe 3.6.3 → 3.6.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (210) hide show

package/v3/dist/init/phases/06-code-intelligence.js CHANGED Viewed

@@ -6,10 +6,41 @@
  * so QE agents can use it later to reduce token consumption via
  * semantic code search instead of full file reads.
  */
-import { existsSync } from 'fs';
+import { existsSync, statSync } from 'fs';
 import { join } from 'path';
 import { BasePhase, } from './phase-interface.js';
 import { createMemoryBackend } from '../../kernel/memory-factory.js';
+/** Patterns to exclude from code intelligence scanning */
+const SCAN_IGNORE_PATTERNS = [
+    '**/node_modules/**',
+    '**/dist/**',
+    '**/build/**',
+    '**/out/**',
+    '**/coverage/**',
+    '**/.agentic-qe/**',
+    '**/.git/**',
+    '**/.next/**',
+    '**/.nuxt/**',
+    '**/.output/**',
+    '**/__pycache__/**',
+    '**/.pytest_cache/**',
+    '**/target/**',
+    '**/vendor/**',
+    '**/.venv/**',
+    '**/venv/**',
+    '**/.tox/**',
+    '**/*.min.js',
+    '**/*.min.css',
+    '**/*.bundle.js',
+    '**/*.map',
+    '**/package-lock.json',
+    '**/yarn.lock',
+    '**/pnpm-lock.yaml',
+    '**/Pipfile.lock',
+    '**/poetry.lock',
+    '**/.env',
+    '**/.env.*',
+];
 /**
  * Code Intelligence phase - builds knowledge graph
  */
@@ -21,16 +52,26 @@ export class CodeIntelligencePhase extends BasePhase {
     requiresPhases = ['database'];
     async run(context) {
         const { projectRoot } = context;
-        // Check for existing index
         const hasIndex = await this.checkCodeIntelligenceIndex(projectRoot);
-        if (hasIndex) {
+        if (!hasIndex) {
+            context.services.log('  Building knowledge graph...');
+            return await this.runCodeIntelligenceScan(projectRoot, context, false);
+        }
+        // Delta scan: check for files modified since last index
+        const lastIndexedAt = await this.getLastIndexedAt(projectRoot);
+        if (!lastIndexedAt) {
             const entryCount = await this.getKGEntryCount(projectRoot);
             context.services.log(`  Using existing index (${entryCount} entries)`);
             return { status: 'existing', entries: entryCount };
         }
-        // Run full scan
-        context.services.log('  Building knowledge graph...');
-        return await this.runCodeIntelligenceScan(projectRoot, context);
+        const changedFiles = await this.findChangedFiles(projectRoot, lastIndexedAt);
+        if (changedFiles.length === 0) {
+            const entryCount = await this.getKGEntryCount(projectRoot);
+            context.services.log(`  Index up to date (${entryCount} entries)`);
+            return { status: 'existing', entries: entryCount };
+        }
+        context.services.log(`  Delta scan: ${changedFiles.length} files changed since last index...`);
+        return await this.runCodeIntelligenceScan(projectRoot, context, true, changedFiles);
     }
     /**
      * Check if code intelligence index exists
@@ -83,12 +124,9 @@ export class CodeIntelligencePhase extends BasePhase {
      * - Test target discovery (what tests cover what code)
      * - Token reduction (search KG instead of reading entire files)
      */
-    async runCodeIntelligenceScan(projectRoot, context) {
+    async runCodeIntelligenceScan(projectRoot, context, incremental, changedFiles) {
         try {
-            // Import knowledge graph service
             const { KnowledgeGraphService } = await import('../../domains/code-intelligence/services/knowledge-graph.js');
-            // FIXED: Use SQLite backend for PERSISTENCE instead of InMemoryBackend
-            // This ensures KG data survives init and is available to QE agents
             const dbPath = join(projectRoot, '.agentic-qe', 'memory.db');
             const memoryConfig = {
                 type: 'sqlite',
@@ -102,27 +140,31 @@ export class CodeIntelligencePhase extends BasePhase {
                 namespace: 'code-intelligence:kg',
                 enableVectorEmbeddings: true,
             });
-            // Find source files
-            const glob = await import('fast-glob');
-            const files = await glob.default([
-                '**/*.ts', '**/*.tsx', '**/*.js', '**/*.jsx', '**/*.py'
-            ], {
-                cwd: projectRoot,
-                ignore: ['**/node_modules/**', '**/dist/**', '**/coverage/**', '**/.agentic-qe/**'],
-            });
-            // Index files - this now persists to SQLite
+            let filesToIndex;
+            if (changedFiles) {
+                filesToIndex = changedFiles;
+            }
+            else {
+                const glob = await import('fast-glob');
+                const files = await glob.default([
+                    '**/*.ts', '**/*.tsx', '**/*.js', '**/*.jsx', '**/*.py'
+                ], {
+                    cwd: projectRoot,
+                    ignore: SCAN_IGNORE_PATTERNS,
+                });
+                filesToIndex = files.map(f => join(projectRoot, f));
+            }
             const result = await kgService.index({
-                paths: files.map(f => join(projectRoot, f)),
-                incremental: false,
+                paths: filesToIndex,
+                incremental,
                 includeTests: true,
             });
-            // Clear caches but keep persisted data
             kgService.destroy();
-            // Dispose memory backend to flush writes
             await memory.dispose();
             if (result.success) {
                 const entries = result.value.nodesCreated + result.value.edgesCreated;
-                context.services.log(`  Indexed ${entries} entries to ${dbPath}`);
+                const label = incremental ? 'Delta indexed' : 'Indexed';
+                context.services.log(`  ${label} ${entries} entries to ${dbPath}`);
                 return { status: 'indexed', entries };
             }
             return { status: 'error', entries: 0 };
@@ -132,6 +174,58 @@ export class CodeIntelligencePhase extends BasePhase {
             return { status: 'skipped', entries: 0 };
         }
     }
+    /**
+     * Read the indexedAt timestamp from KG metadata
+     */
+    async getLastIndexedAt(projectRoot) {
+        const dbPath = join(projectRoot, '.agentic-qe', 'memory.db');
+        try {
+            const Database = (await import('better-sqlite3')).default;
+            const db = new Database(dbPath);
+            const row = db.prepare(`
+        SELECT value FROM kv_store
+        WHERE namespace = 'code-intelligence:kg'
+          AND key = 'metadata:index'
+      `).get();
+            db.close();
+            if (!row)
+                return null;
+            const metadata = JSON.parse(row.value);
+            if (!metadata.indexedAt)
+                return null;
+            const date = new Date(metadata.indexedAt);
+            return isNaN(date.getTime()) ? null : date;
+        }
+        catch {
+            return null;
+        }
+    }
+    /**
+     * Find files modified since the given date
+     */
+    async findChangedFiles(projectRoot, since) {
+        const glob = await import('fast-glob');
+        const files = await glob.default([
+            '**/*.ts', '**/*.tsx', '**/*.js', '**/*.jsx', '**/*.py'
+        ], {
+            cwd: projectRoot,
+            ignore: SCAN_IGNORE_PATTERNS,
+        });
+        const sinceMs = since.getTime();
+        const changed = [];
+        for (const file of files) {
+            const fullPath = join(projectRoot, file);
+            try {
+                if (statSync(fullPath).mtimeMs > sinceMs) {
+                    changed.push(fullPath);
+                }
+            }
+            catch {
+                // File may have been deleted between glob and stat
+            }
+        }
+        return changed;
+    }
 }
 // Instance exported from index.ts
 //# sourceMappingURL=06-code-intelligence.js.map

package/v3/dist/init/phases/06-code-intelligence.js.map CHANGED Viewed

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package/v3/dist/init/phases/11-claude-md.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"11-claude-md.d.ts","sourceRoot":"","sources":["../../../src/init/phases/11-claude-md.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAKH,OAAO,EACL,SAAS,EACT,KAAK,WAAW,EACjB,MAAM,sBAAsB,CAAC;AAG9B,MAAM,WAAW,cAAc;IAC7B,SAAS,EAAE,OAAO,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,OAAO,CAAC;CACxB;AAED;;GAEG;AACH,qBAAa,aAAc,SAAQ,SAAS,CAAC,cAAc,CAAC;IAC1D,QAAQ,CAAC,IAAI,eAAe;IAC5B,QAAQ,CAAC,WAAW,wBAAwB;IAC5C,QAAQ,CAAC,KAAK,OAAO;IACrB,QAAQ,CAAC,QAAQ,SAAS;IAC1B,QAAQ,CAAC,cAAc,6BAA8B;cAErC,GAAG,CAAC,OAAO,EAAE,WAAW,GAAG,OAAO,CAAC,cAAc,CAAC;IA0ClE;;OAEG;IACH,OAAO,CAAC,eAAe;~~CA0FxB~~"}
1	+ {"version":3,"file":"11-claude-md.d.ts","sourceRoot":"","sources":["../../../src/init/phases/11-claude-md.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAKH,OAAO,EACL,SAAS,EACT,KAAK,WAAW,EACjB,MAAM,sBAAsB,CAAC;AAG9B,MAAM,WAAW,cAAc;IAC7B,SAAS,EAAE,OAAO,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,EAAE,OAAO,CAAC;CACxB;AAED;;GAEG;AACH,qBAAa,aAAc,SAAQ,SAAS,CAAC,cAAc,CAAC;IAC1D,QAAQ,CAAC,IAAI,eAAe;IAC5B,QAAQ,CAAC,WAAW,wBAAwB;IAC5C,QAAQ,CAAC,KAAK,OAAO;IACrB,QAAQ,CAAC,QAAQ,SAAS;IAC1B,QAAQ,CAAC,cAAc,6BAA8B;cAErC,GAAG,CAAC,OAAO,EAAE,WAAW,GAAG,OAAO,CAAC,cAAc,CAAC;IA0ClE;;OAEG;IACH,OAAO,CAAC,eAAe;CAwKxB"}

package/v3/dist/init/phases/11-claude-md.js CHANGED Viewed

@@ -57,32 +57,31 @@ export class ClaudeMdPhase extends BasePhase {
         const moreDomainsCount = Math.max(0, config.domains.enabled.length - 6);
         return `## Agentic QE v3
-This project uses **Agentic QE v3** - a Domain-Driven Quality Engineering platform with 12 bounded contexts, ReasoningBank learning, and HNSW vector search.
+This project uses **Agentic QE v3** - a Domain-Driven Quality Engineering platform with 13 bounded contexts, ReasoningBank learning, HNSW vector search, and Agent Teams coordination (ADR-064).
 ---
-### ⚠️ CRITICAL POLICIES
+### CRITICAL POLICIES
 #### Integrity Rule (ABSOLUTE)
-- ❌ NO shortcuts, fake data, or false claims
-- ✅ ALWAYS implement properly, verify before claiming success
-- ✅ ALWAYS use real database queries for integration tests
-- ✅ ALWAYS run actual tests, not assume they pass
+- NO shortcuts, fake data, or false claims
+- ALWAYS implement properly, verify before claiming success
+- ALWAYS use real database queries for integration tests
+- ALWAYS run actual tests, not assume they pass
 **We value the quality we deliver to our users.**
 #### Test Execution
-- ❌ NEVER run \`npm test\` without \`--run\` flag (watch mode risk)
-- ✅ Use: \`npm test -- --run\` for single test runs
-- ✅ Use: \`npm run test:unit\`, \`npm run test:integration\` when available
+- NEVER run \`npm test\` without \`--run\` flag (watch mode risk)
+- Use: \`npm test -- --run\`, \`npm run test:unit\`, \`npm run test:integration\` when available
 #### Data Protection
-- ❌ NEVER run \`rm -f\` on \`.agentic-qe/\` or \`*.db\` files without confirmation
-- ✅ ALWAYS backup before database operations
+- NEVER run \`rm -f\` on \`.agentic-qe/\` or \`*.db\` files without confirmation
+- ALWAYS backup before database operations
 #### Git Operations
-- ❌ NEVER auto-commit/push without explicit user request
-- ✅ ALWAYS wait for user confirmation before git operations
+- NEVER auto-commit/push without explicit user request
+- ALWAYS wait for user confirmation before git operations
 ---
@@ -102,18 +101,97 @@ aqe test generate <file>
 aqe coverage <path>
 \`\`\`
-### MCP Server Tools
+### Using AQE MCP Tools
+AQE exposes tools via MCP with the \`mcp__agentic-qe__\` prefix. You MUST call \`fleet_init\` before any other tool.
+#### 1. Initialize the Fleet (required first step)
+\`\`\`typescript
+mcp__agentic-qe__fleet_init({
+  topology: "hierarchical",
+  maxAgents: 15,
+  memoryBackend: "hybrid"
+})
+\`\`\`
+#### 2. Generate Tests
+\`\`\`typescript
+mcp__agentic-qe__test_generate_enhanced({
+  targetPath: "src/services/auth.ts",
+  framework: "vitest",
+  strategy: "boundary-value"
+})
+\`\`\`
+#### 3. Analyze Coverage
+\`\`\`typescript
+mcp__agentic-qe__coverage_analyze_sublinear({
+  paths: ["src/"],
+  threshold: 80
+})
+\`\`\`
+#### 4. Assess Quality
+\`\`\`typescript
+mcp__agentic-qe__quality_assess({
+  scope: "full",
+  includeMetrics: true
+})
+\`\`\`
+#### 5. Store and Query Patterns (with learning persistence)
+\`\`\`typescript
+// Store a learned pattern
+mcp__agentic-qe__memory_store({
+  key: "patterns/coverage-gap/{timestamp}",
+  namespace: "learning",
+  value: {
+    pattern: "...",
+    confidence: 0.95,
+    type: "coverage-gap",
+    metadata: { /* domain-specific */ }
+  },
+  persist: true
+})
+// Query stored patterns
+mcp__agentic-qe__memory_query({
+  pattern: "patterns/*",
+  namespace: "learning",
+  limit: 10
+})
+\`\`\`
+#### 6. Orchestrate Multi-Agent Tasks
+\`\`\`typescript
+mcp__agentic-qe__task_orchestrate({
+  task: "Full quality assessment of auth module",
+  domains: ["test-generation", "coverage-analysis", "security-compliance"],
+  parallel: true
+})
+\`\`\`
+### MCP Tool Reference
 | Tool | Description |
 |------|-------------|
-| \`fleet_init\` | Initialize QE fleet with topology |
+| \`fleet_init\` | Initialize QE fleet (MUST call first) |
+| \`fleet_status\` | Get fleet health and agent status |
 | \`agent_spawn\` | Spawn specialized QE agent |
 | \`test_generate_enhanced\` | AI-powered test generation |
 | \`test_execute_parallel\` | Parallel test execution with retry |
 | \`task_orchestrate\` | Orchestrate multi-agent QE tasks |
 | \`coverage_analyze_sublinear\` | O(log n) coverage analysis |
 | \`quality_assess\` | Quality gate evaluation |
-| \`memory_store\` / \`memory_query\` | Pattern storage with namespacing |
+| \`memory_store\` | Store patterns with namespace + persist |
+| \`memory_query\` | Query patterns by namespace/pattern |
+| \`security_scan_comprehensive\` | SAST/DAST scanning |
 ### Configuration

package/v3/dist/init/phases/11-claude-md.js.map CHANGED Viewed

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package/v3/dist/kernel/constants.d.ts CHANGED Viewed

@@ -27,7 +27,7 @@ export declare const MEMORY_CONSTANTS: {
      * Default vector embedding dimensions for HNSW index.
      * 384 dimensions matches common sentence transformers.
      */
-    readonly DEFAULT_VECTOR_DIMENSIONS: 384;
+    readonly DEFAULT_VECTOR_DIMENSIONS: 768;
     /**
      * Default search result limit for KV store queries.
      * Prevents unbounded result sets.

package/v3/dist/kernel/constants.js CHANGED Viewed

@@ -30,7 +30,7 @@ export const MEMORY_CONSTANTS = {
      * Default vector embedding dimensions for HNSW index.
      * 384 dimensions matches common sentence transformers.
      */
-    DEFAULT_VECTOR_DIMENSIONS: 384,
+    DEFAULT_VECTOR_DIMENSIONS: 768,
     /**
      * Default search result limit for KV store queries.
      * Prevents unbounded result sets.

package/v3/dist/kernel/unified-memory-migration.d.ts.map CHANGED Viewed

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package/v3/dist/kernel/unified-memory-migration.js CHANGED Viewed

@@ -10,6 +10,7 @@
 import Database from 'better-sqlite3';
 import * as fs from 'fs';
 import * as path from 'path';
+import { validateTableName } from '../shared/sql-safety.js';
 const DEFAULT_OPTIONS = {
     baseDir: '.agentic-qe',
     createBackups: true,
@@ -95,7 +96,7 @@ export async function migrateToUnifiedMemory(options) {
                     continue;
                 }
                 // Count rows
-                const countRow = sourceDb.prepare(`SELECT COUNT(*) as count FROM ${tableName}`).get();
+                const countRow = sourceDb.prepare(`SELECT COUNT(*) as count FROM ${validateTableName(tableName)}`).get();
                 const rowCount = countRow.count;
                 if (rowCount === 0) {
                     continue;
@@ -112,12 +113,12 @@ export async function migrateToUnifiedMemory(options) {
         `).get(tableName);
                 targetDb.exec(schemaRow.sql);
                 // Copy data
-                const rows = sourceDb.prepare(`SELECT * FROM ${tableName}`).all();
+                const rows = sourceDb.prepare(`SELECT * FROM ${validateTableName(tableName)}`).all();
                 if (rows.length > 0) {
                     const columns = Object.keys(rows[0]);
                     const placeholders = columns.map(() => '?').join(', ');
                     const insertStmt = targetDb.prepare(`
-            INSERT OR REPLACE INTO ${tableName} (${columns.join(', ')})
+            INSERT OR REPLACE INTO ${validateTableName(tableName)} (${columns.join(', ')})
             VALUES (${placeholders})
           `);
                     const insertMany = targetDb.transaction((items) => {

package/v3/dist/kernel/unified-memory-migration.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/v3/dist/kernel/unified-memory.d.ts CHANGED Viewed

@@ -17,6 +17,7 @@
  * - No confusion about where data lives
  */
 import { type Database as DatabaseType, type Statement } from 'better-sqlite3';
+export { validateTableName, ALLOWED_TABLE_NAMES } from '../shared/sql-safety.js';
 import { type CRDTStore, type CRDTStoreState, type CRDTStoreDelta } from '../memory/crdt/index.js';
 /**
  * Find the project root by walking up the directory tree.
@@ -172,7 +173,8 @@ export declare class UnifiedMemoryManager {
      */
     vectorDelete(id: string): Promise<boolean>;
     /**
-     * Search for similar vectors
+     * Search for similar vectors.
+     * Uses batch SQL query instead of N+1 individual queries for metadata enrichment.
      */
     vectorSearch(query: number[], k?: number, namespace?: string): Promise<Array<{
         id: string;

package/v3/dist/kernel/unified-memory.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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