agentic-qe 3.6.11 → 3.6.13

package/.claude/helpers/learning-service.mjs

@@ -589,6 +589,8 @@ class LearningService {
 
     // Initialize database
     this.db = new Database(DB_PATH);
+    this.db.pragma('busy_timeout = 5000');
+    this.db.pragma('journal_mode = WAL');
     initializeDatabase(this.db);
 
     // Initialize embedding service

package/.claude/helpers/statusline-v3.cjs

@@ -25,6 +25,7 @@ try {
   // Verify native bindings actually work (require succeeds but constructor
   // may throw if .node binary isn't compiled for this platform)
   const testDb = new Database(':memory:');
+  testDb.pragma('busy_timeout = 5000');
   testDb.close();
 } catch {
   Database = null; // Fallback to CLI if better-sqlite3 not available
@@ -138,6 +139,7 @@ function getDb(dbPath) {
     if (Database && fileExists(dbPath)) {
       try {
         const db = new Database(dbPath, { readonly: true, fileMustExist: true });
+        db.pragma('busy_timeout = 5000');
         dbCache.set(dbPath, db);
       } catch {
         dbCache.set(dbPath, null);

package/.claude/skills/skills-manifest.json

@@ -904,7 +904,7 @@
   },
   "metadata": {
     "generatedBy": "Agentic QE Fleet",
-    "fleetVersion": "3.6.11",
+    "fleetVersion": "3.6.13",
     "manifestVersion": "1.3.0",
     "lastUpdated": "2026-02-04T00:00:00.000Z",
     "contributors": [

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agentic-qe",
-  "version": "3.6.11",
+  "version": "3.6.13",
   "description": "Agentic Quality Engineering V3 - Domain-Driven Design Architecture with 13 Bounded Contexts, O(log n) coverage analysis, ReasoningBank learning, 59 specialized QE agents, mathematical Coherence verification, deep Claude Flow integration",
   "main": "./v3/dist/index.js",
   "types": "./v3/dist/index.d.ts",

package/scripts/migrate-v2-to-v3-memory.js

@@ -48,7 +48,9 @@ function uuid() {
 console.log('=== v2 → v3 Memory Migration ===\n');
 
 const v2 = new Database(V2_PATH, { readonly: true });
+v2.pragma('busy_timeout = 5000');
 const v3 = new Database(V3_PATH);
+v3.pragma('busy_timeout = 5000');
 
 // Enable WAL mode for performance
 v3.pragma('journal_mode = WAL');

package/scripts/sync-claude-flow.cjs

@@ -29,6 +29,7 @@ console.log('Entries to sync:', keys.length);
 
 const Database = require('better-sqlite3');
 const db = new Database(aqeDbPath);
+db.pragma('busy_timeout = 5000');
 db.pragma('journal_mode = WAL');
 
 const insert = db.prepare(`

package/v3/CHANGELOG.md

@@ -5,6 +5,35 @@ All notable changes to Agentic QE will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [3.6.13] - 2026-02-19
+
+### Fixed
+
+- **test_generate_enhanced returned placeholder stubs** (#292) — Agent Booster was intercepting generate-tests tasks via func-to-arrow pattern detection in source code. Added task-type blocklist to prevent Booster from hijacking domain tasks. Fixed mapToResult to use real testCode from domain service with extracted assertions instead of V2 `func() === null` stubs.
+- **MCP connection crash from uncaught exceptions** (#292) — Added uncaughtException and unhandledRejection handlers in MCP entry to keep the JSON-RPC connection alive. Wrapped QualityFeedbackLoop initialization in defensive try/catch.
+- **Vector dimension mismatch 128 vs 768 in 6 locations** (#292) — Changed embeddingDim defaults from 128 to 768 in decision-transformer, test-generation coordinator, test-prioritizer, feature-flags (2 locations), and shard-embeddings.
+- **coverage_analyze_sublinear returned empty coverageByFile** (#292) — Handler now attempts automatic coverage collection by running `npm test --coverage` when no existing data found. Detects test runner from package.json. Added per-file coverage data mapping in result.
+- **Security scan missed secrets in JS/TS files and known CVEs** (#292) — Cross-language secret patterns now run on ALL files (was only non-JS/TS). Added known-CVE checking for python-jose (CVE-2024-33663/33664) and python-multipart (CVE-2026-24486). Added generic SECRET assignment pattern.
+- **aqe init --auto hooks verification** (#292) — Added post-write verification after settings.json write to detect and warn about missing AQE hooks.
+
+### Added
+
+- Bug Fix Verification rules in CLAUDE.md (reproduction-first, MCP-CLI parity, per-issue verification, smoke test, evidence required, integration tests for MCP)
+
+## [3.6.12] - 2026-02-19
+
+### Fixed
+
+- **HNSW native crash on vector dimension mismatch** (#284, #285) — All 13 HNSW-related source files were initialized with 128 dimensions while RealEmbeddings produces 768-dim vectors. The mismatch triggered a native Rust SIGABRT in ruvector-gnn, killing the MCP connection. All dimension constants now correctly use 768.
+- **Dimension guard for mismatched vectors** (#284) — `unified-memory-hnsw.ts` now skips mismatched vectors with a warning instead of producing garbage partial cosine similarity results.
+- **Security scan returned hardcoded fake findings** (#287) — Complete rewrite of `scan.ts` to perform real SAST file scanning using 40+ regex patterns from security-patterns.ts. Now scans security-relevant directories (.github, .docker, .aws) and checks dependency vulnerabilities.
+- **Coverage analyzer missing XML parser** (#286) — Added Cobertura XML parser with order-independent attribute extraction to `loadCoverageData()`. XML coverage files no longer silently fall through.
+- **Secret detection only found first match per line** (#286) — Changed from `test()` to `matchAll()` so multiple secrets on the same line are all reported.
+- **CORS detection too narrow** (#286) — Broadened from single Express pattern to 5 patterns covering Express, Spring Boot, Nginx, Go, and raw HTTP headers.
+- **Fake MCP handlers** (#286) — Replaced 6 stub handlers (execute-tests, validate-requirements, validate-contracts, test-accessibility, run-chaos, optimize-learning) with real implementations or honest guidance responses.
+- **`aqe init --auto` did not create .claude/hooks/ directory** (#288) — Init phase 07-hooks.ts now creates `.claude/hooks/`, installs real hook assets (cross-phase-memory.yaml, v3-domain-workers.json), and writes a README explaining the hook setup.
+- **Dangerous uncaughtException handler** — Removed `process.on('uncaughtException')` from protocol-server.ts that was masking bugs. The existing try/catch on `onRequest` handles JS errors; native SIGABRT from Rust cannot be caught by any JS handler.
+
 ## [3.6.11] - 2026-02-18
 
 ### Added

package/v3/dist/adapters/claude-flow/trajectory-bridge.js

@@ -129,13 +129,13 @@ export class TrajectoryBridge {
             const { existsSync, mkdirSync } = await import('fs');
             const { createRequire } = await import('module');
             const require = createRequire(import.meta.url);
-            const Database = require('better-sqlite3');
+            const { openDatabase } = require('../../shared/safe-db.js');
             const dbPath = join(this.options.projectRoot, '.agentic-qe', 'trajectories.db');
             const dir = join(this.options.projectRoot, '.agentic-qe');
             if (!existsSync(dir)) {
                 mkdirSync(dir, { recursive: true });
             }
-            const db = new Database(dbPath);
+            const db = openDatabase(dbPath);
             // Create table if needed
             db.exec(`
         CREATE TABLE IF NOT EXISTS trajectories (

package/v3/dist/adapters/claude-flow/trajectory-bridge.js.map

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package/v3/dist/benchmarks/performance-benchmarks.js

@@ -159,7 +159,7 @@ export async function benchmarkHNSWIndex() {
     try {
         // Dynamic import to handle optional dependency
         const { HNSWIndex, DEFAULT_HNSW_CONFIG } = await import('../domains/coverage-analysis/services/hnsw-index.js');
-        const dimensions = 128;
+        const dimensions = 768;
         const config = {
             ...DEFAULT_HNSW_CONFIG,
             dimensions,