agentic-qe 3.2.3 → 3.3.1

package/v3/dist/init/phases/12-verification.js

@@ -0,0 +1,370 @@
+/**
+ * Phase 12: Verification
+ * Verifies the installation and writes version marker
+ *
+ * IMPORTANT: This phase preserves user customizations in config.yaml
+ * when running init on an existing installation (Issue #206).
+ */
+import { existsSync, readFileSync } from 'fs';
+import { join, dirname } from 'path';
+import { mkdirSync, writeFileSync } from 'fs';
+import { createRequire } from 'module';
+import { BasePhase, } from './phase-interface.js';
+const require = createRequire(import.meta.url);
+/**
+ * Verification phase - verifies installation and writes markers
+ */
+export class VerificationPhase extends BasePhase {
+    name = 'verification';
+    description = 'Verify installation';
+    order = 120;
+    critical = true;
+    requiresPhases = ['database', 'configuration'];
+    async run(context) {
+        const config = context.config;
+        const { projectRoot } = context;
+        const checks = [];
+        // Check database exists
+        const dbPath = join(projectRoot, '.agentic-qe', 'memory.db');
+        checks.push({
+            name: 'Database exists',
+            passed: existsSync(dbPath),
+        });
+        // Check .agentic-qe directory
+        checks.push({
+            name: '.agentic-qe directory',
+            passed: existsSync(join(projectRoot, '.agentic-qe')),
+        });
+        // Check config (will be written below)
+        const configPath = join(projectRoot, '.agentic-qe', 'config.yaml');
+        // Save configuration
+        await this.saveConfig(config, projectRoot);
+        checks.push({
+            name: 'Config saved',
+            passed: existsSync(configPath),
+        });
+        // Write version marker
+        const versionWritten = await this.writeVersionToDb(config.version, projectRoot);
+        checks.push({
+            name: 'Version marker',
+            passed: versionWritten,
+        });
+        // All critical checks must pass
+        const criticalChecks = ['Database exists', '.agentic-qe directory', 'Config saved'];
+        const allCriticalPassed = checks
+            .filter(c => criticalChecks.includes(c.name))
+            .every(c => c.passed);
+        context.services.log('  Verification checks:');
+        for (const check of checks) {
+            context.services.log(`    ${check.passed ? '✓' : '✗'} ${check.name}`);
+        }
+        return {
+            verified: allCriticalPassed,
+            versionWritten,
+            configSaved: existsSync(configPath),
+            checks,
+        };
+    }
+    /**
+     * Write AQE version to memory.db
+     */
+    async writeVersionToDb(version, projectRoot) {
+        const memoryDbPath = join(projectRoot, '.agentic-qe', 'memory.db');
+        try {
+            const dir = dirname(memoryDbPath);
+            if (!existsSync(dir)) {
+                mkdirSync(dir, { recursive: true });
+            }
+            const Database = require('better-sqlite3');
+            const db = new Database(memoryDbPath);
+            try {
+                db.exec(`
+          CREATE TABLE IF NOT EXISTS kv_store (
+            key TEXT NOT NULL,
+            namespace TEXT NOT NULL,
+            value TEXT NOT NULL,
+            expires_at INTEGER,
+            created_at INTEGER DEFAULT (strftime('%s', 'now') * 1000),
+            PRIMARY KEY (namespace, key)
+          );
+        `);
+                const now = Date.now();
+                db.prepare(`
+          INSERT OR REPLACE INTO kv_store (key, namespace, value, created_at)
+          VALUES (?, '_system', ?, ?)
+        `).run('aqe_version', JSON.stringify(version), now);
+                db.prepare(`
+          INSERT OR REPLACE INTO kv_store (key, namespace, value, created_at)
+          VALUES (?, '_system', ?, ?)
+        `).run('init_timestamp', JSON.stringify(new Date().toISOString()), now);
+                db.close();
+                return true;
+            }
+            catch (err) {
+                db.close();
+                return false;
+            }
+        }
+        catch {
+            return false;
+        }
+    }
+    /**
+     * Save configuration to YAML file
+     * Preserves user customizations from existing config (Issue #206)
+     */
+    async saveConfig(config, projectRoot) {
+        const configDir = join(projectRoot, '.agentic-qe');
+        if (!existsSync(configDir)) {
+            mkdirSync(configDir, { recursive: true });
+        }
+        const configPath = join(configDir, 'config.yaml');
+        // Preserve user customizations if config already exists
+        if (existsSync(configPath)) {
+            const existingConfig = this.loadExistingConfig(configPath);
+            if (existingConfig) {
+                config = this.mergeConfigs(config, existingConfig);
+            }
+        }
+        const yaml = this.configToYAML(config);
+        writeFileSync(configPath, yaml, 'utf-8');
+    }
+    /**
+     * Load existing config.yaml and parse it
+     * Returns null if parsing fails
+     */
+    loadExistingConfig(configPath) {
+        try {
+            const content = readFileSync(configPath, 'utf-8');
+            return this.parseYAML(content);
+        }
+        catch {
+            return null;
+        }
+    }
+    /**
+     * Simple YAML parser for our config format
+     * Handles the specific structure we generate
+     */
+    parseYAML(content) {
+        try {
+            const result = {};
+            const lines = content.split('\n');
+            let currentSection = '';
+            let currentSubSection = '';
+            for (const line of lines) {
+                // Skip comments and empty lines
+                if (line.trim().startsWith('#') || line.trim() === '') {
+                    continue;
+                }
+                // Top-level key (no indentation)
+                const topMatch = line.match(/^(\w+):\s*(.*)$/);
+                if (topMatch) {
+                    currentSection = topMatch[1];
+                    currentSubSection = '';
+                    const value = topMatch[2].trim();
+                    if (value && !value.startsWith('"')) {
+                        // Simple value
+                        result[currentSection] = this.parseValue(value);
+                    }
+                    else if (value) {
+                        result[currentSection] = this.parseValue(value);
+                    }
+                    else {
+                        result[currentSection] = {};
+                    }
+                    continue;
+                }
+                // Second-level key (2-space indent)
+                const subMatch = line.match(/^  (\w+):\s*(.*)$/);
+                if (subMatch && currentSection) {
+                    currentSubSection = subMatch[1];
+                    const value = subMatch[2].trim();
+                    if (!result[currentSection]) {
+                        result[currentSection] = {};
+                    }
+                    if (value) {
+                        result[currentSection][currentSubSection] = this.parseValue(value);
+                    }
+                    else {
+                        result[currentSection][currentSubSection] = {};
+                    }
+                    continue;
+                }
+                // Third-level key (4-space indent)
+                const thirdMatch = line.match(/^    (\w+):\s*(.*)$/);
+                if (thirdMatch && currentSection && currentSubSection) {
+                    const key = thirdMatch[1];
+                    const value = thirdMatch[2].trim();
+                    const section = result[currentSection];
+                    if (!section[currentSubSection]) {
+                        section[currentSubSection] = {};
+                    }
+                    if (typeof section[currentSubSection] === 'object' && !Array.isArray(section[currentSubSection])) {
+                        section[currentSubSection][key] = this.parseValue(value);
+                    }
+                    continue;
+                }
+                // Array item (4-space indent with dash)
+                const arrayMatch = line.match(/^    - "?([^"]*)"?$/);
+                if (arrayMatch && currentSection && currentSubSection) {
+                    const section = result[currentSection];
+                    if (!Array.isArray(section[currentSubSection])) {
+                        section[currentSubSection] = [];
+                    }
+                    section[currentSubSection].push(arrayMatch[1]);
+                }
+            }
+            return result;
+        }
+        catch {
+            return null;
+        }
+    }
+    /**
+     * Parse a YAML value
+     */
+    parseValue(value) {
+        if (value === 'true')
+            return true;
+        if (value === 'false')
+            return false;
+        if (/^\d+$/.test(value))
+            return parseInt(value, 10);
+        if (/^\d+\.\d+$/.test(value))
+            return parseFloat(value);
+        if (value.startsWith('"') && value.endsWith('"')) {
+            return value.slice(1, -1);
+        }
+        return value;
+    }
+    /**
+     * Merge new config with existing user customizations
+     * Preserves: domains.enabled, domains.disabled, and other user settings
+     */
+    mergeConfigs(newConfig, existing) {
+        // Fields to preserve from existing config (user customizations)
+        // These are settings users commonly customize manually
+        // Preserve custom domains (Issue #206: visual-accessibility example)
+        if (existing.domains?.enabled && Array.isArray(existing.domains.enabled)) {
+            // Merge: keep all existing enabled domains + any new defaults not already present
+            const existingDomains = new Set(existing.domains.enabled);
+            const newDomains = new Set(newConfig.domains.enabled);
+            // Add any new default domains that weren't in existing
+            for (const domain of newDomains) {
+                existingDomains.add(domain);
+            }
+            // Remove any domains that were explicitly disabled
+            const disabledDomains = new Set(existing.domains?.disabled || []);
+            newConfig.domains.enabled = Array.from(existingDomains).filter(d => !disabledDomains.has(d));
+        }
+        if (existing.domains?.disabled && Array.isArray(existing.domains.disabled)) {
+            newConfig.domains.disabled = existing.domains.disabled;
+        }
+        // Preserve user's learning preferences
+        if (existing.learning?.enabled !== undefined) {
+            newConfig.learning.enabled = existing.learning.enabled;
+        }
+        // Preserve user's hook preferences
+        if (existing.hooks?.claudeCode !== undefined) {
+            newConfig.hooks.claudeCode = existing.hooks.claudeCode;
+        }
+        if (existing.hooks?.preCommit !== undefined) {
+            newConfig.hooks.preCommit = existing.hooks.preCommit;
+        }
+        if (existing.hooks?.ciIntegration !== undefined) {
+            newConfig.hooks.ciIntegration = existing.hooks.ciIntegration;
+        }
+        // Preserve worker preferences
+        if (existing.workers?.enabled && Array.isArray(existing.workers.enabled)) {
+            newConfig.workers.enabled = existing.workers.enabled;
+        }
+        if (existing.workers?.daemonAutoStart !== undefined) {
+            newConfig.workers.daemonAutoStart = existing.workers.daemonAutoStart;
+        }
+        // Preserve agent limits
+        if (existing.agents?.maxConcurrent !== undefined) {
+            newConfig.agents.maxConcurrent = existing.agents.maxConcurrent;
+        }
+        if (existing.agents?.defaultTimeout !== undefined) {
+            newConfig.agents.defaultTimeout = existing.agents.defaultTimeout;
+        }
+        return newConfig;
+    }
+    /**
+     * Convert config to YAML
+     */
+    configToYAML(config) {
+        const lines = [
+            '# Agentic QE v3 Configuration',
+            '# Generated by aqe init',
+            `# ${new Date().toISOString()}`,
+            '#',
+            '# NOTE: Your customizations are PRESERVED when you run "aqe init" again.',
+            '# You do NOT need to re-run "aqe init" after editing this file - changes',
+            '# take effect immediately. The following settings are merged on reinstall:',
+            '#   - domains.enabled (custom domains like visual-accessibility)',
+            '#   - domains.disabled',
+            '#   - learning.enabled',
+            '#   - hooks.* preferences',
+            '#   - workers.enabled',
+            '#   - agents.maxConcurrent and defaultTimeout',
+            '',
+            `version: "${config.version}"`,
+            '',
+            'project:',
+            `  name: "${config.project.name}"`,
+            `  root: "${config.project.root}"`,
+            `  type: "${config.project.type}"`,
+            '',
+            'learning:',
+            `  enabled: ${config.learning.enabled}`,
+            `  embeddingModel: "${config.learning.embeddingModel}"`,
+            '  hnswConfig:',
+            `    M: ${config.learning.hnswConfig.M}`,
+            `    efConstruction: ${config.learning.hnswConfig.efConstruction}`,
+            `    efSearch: ${config.learning.hnswConfig.efSearch}`,
+            `  qualityThreshold: ${config.learning.qualityThreshold}`,
+            `  promotionThreshold: ${config.learning.promotionThreshold}`,
+            `  pretrainedPatterns: ${config.learning.pretrainedPatterns}`,
+            '',
+            'routing:',
+            `  mode: "${config.routing.mode}"`,
+            `  confidenceThreshold: ${config.routing.confidenceThreshold}`,
+            `  feedbackEnabled: ${config.routing.feedbackEnabled}`,
+            '',
+            'workers:',
+            '  enabled:',
+            ...config.workers.enabled.map(w => `    - "${w}"`),
+            '  intervals:',
+            ...Object.entries(config.workers.intervals).map(([k, v]) => `    ${k}: ${v}`),
+            `  maxConcurrent: ${config.workers.maxConcurrent}`,
+            `  daemonAutoStart: ${config.workers.daemonAutoStart}`,
+            '',
+            'hooks:',
+            `  claudeCode: ${config.hooks.claudeCode}`,
+            `  preCommit: ${config.hooks.preCommit}`,
+            `  ciIntegration: ${config.hooks.ciIntegration}`,
+            '',
+            'skills:',
+            `  install: ${config.skills.install}`,
+            `  installV2: ${config.skills.installV2}`,
+            `  installV3: ${config.skills.installV3}`,
+            `  overwrite: ${config.skills.overwrite}`,
+            '',
+            'domains:',
+            '  enabled:',
+            ...config.domains.enabled.map(d => `    - "${d}"`),
+            '  disabled:',
+            ...config.domains.disabled.map(d => `    - "${d}"`),
+            '',
+            'agents:',
+            `  maxConcurrent: ${config.agents.maxConcurrent}`,
+            `  defaultTimeout: ${config.agents.defaultTimeout}`,
+            '',
+        ];
+        return lines.join('\n');
+    }
+}
+// Instance exported from index.ts
+//# sourceMappingURL=12-verification.js.map

package/v3/dist/init/phases/12-verification.js.map

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package/v3/dist/init/phases/index.d.ts

@@ -0,0 +1,46 @@
+/**
+ * Init Phases Index
+ * Exports all phase modules for the modular init system
+ */
+export { BasePhase, PhaseRegistry, createPhaseRegistry, type InitPhase, type InitContext, type InitOptions, type PhaseResult, type V2DetectionResult, type EnhancementStatus, } from './phase-interface.js';
+import { DetectionPhase } from './01-detection.js';
+import { AnalysisPhase } from './02-analysis.js';
+import { ConfigurationPhase } from './03-configuration.js';
+import { DatabasePhase } from './04-database.js';
+import { LearningPhase } from './05-learning.js';
+import { CodeIntelligencePhase } from './06-code-intelligence.js';
+import { HooksPhase } from './07-hooks.js';
+import { MCPPhase } from './08-mcp.js';
+import { AssetsPhase } from './09-assets.js';
+import { WorkersPhase } from './10-workers.js';
+import { ClaudeMdPhase } from './11-claude-md.js';
+import { VerificationPhase } from './12-verification.js';
+export { DetectionPhase, type DetectionResult } from './01-detection.js';
+export { AnalysisPhase } from './02-analysis.js';
+export { ConfigurationPhase } from './03-configuration.js';
+export { DatabasePhase, type DatabaseResult } from './04-database.js';
+export { LearningPhase, type LearningResult } from './05-learning.js';
+export { CodeIntelligencePhase, type CodeIntelligenceResult } from './06-code-intelligence.js';
+export { HooksPhase, type HooksResult } from './07-hooks.js';
+export { MCPPhase, type MCPResult } from './08-mcp.js';
+export { AssetsPhase, type AssetsResult } from './09-assets.js';
+export { WorkersPhase, type WorkersResult } from './10-workers.js';
+export { ClaudeMdPhase, type ClaudeMdResult } from './11-claude-md.js';
+export { VerificationPhase, type VerificationResult } from './12-verification.js';
+export declare const detectionPhase: DetectionPhase;
+export declare const analysisPhase: AnalysisPhase;
+export declare const configurationPhase: ConfigurationPhase;
+export declare const databasePhase: DatabasePhase;
+export declare const learningPhase: LearningPhase;
+export declare const codeIntelligencePhase: CodeIntelligencePhase;
+export declare const hooksPhase: HooksPhase;
+export declare const mcpPhase: MCPPhase;
+export declare const assetsPhase: AssetsPhase;
+export declare const workersPhase: WorkersPhase;
+export declare const claudeMdPhase: ClaudeMdPhase;
+export declare const verificationPhase: VerificationPhase;
+/**
+ * Get all default phases in order
+ */
+export declare function getDefaultPhases(): (DetectionPhase | AnalysisPhase | ConfigurationPhase | DatabasePhase | LearningPhase | CodeIntelligencePhase | HooksPhase | MCPPhase | AssetsPhase | WorkersPhase | ClaudeMdPhase | VerificationPhase)[];
+//# sourceMappingURL=index.d.ts.map

package/v3/dist/init/phases/index.d.ts.map

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package/v3/dist/init/phases/index.js

@@ -0,0 +1,64 @@
+/**
+ * Init Phases Index
+ * Exports all phase modules for the modular init system
+ */
+// Phase interface and base class
+export { BasePhase, PhaseRegistry, createPhaseRegistry, } from './phase-interface.js';
+// Individual phases - import and re-export
+import { DetectionPhase } from './01-detection.js';
+import { AnalysisPhase } from './02-analysis.js';
+import { ConfigurationPhase } from './03-configuration.js';
+import { DatabasePhase } from './04-database.js';
+import { LearningPhase } from './05-learning.js';
+import { CodeIntelligencePhase } from './06-code-intelligence.js';
+import { HooksPhase } from './07-hooks.js';
+import { MCPPhase } from './08-mcp.js';
+import { AssetsPhase } from './09-assets.js';
+import { WorkersPhase } from './10-workers.js';
+import { ClaudeMdPhase } from './11-claude-md.js';
+import { VerificationPhase } from './12-verification.js';
+export { DetectionPhase } from './01-detection.js';
+export { AnalysisPhase } from './02-analysis.js';
+export { ConfigurationPhase } from './03-configuration.js';
+export { DatabasePhase } from './04-database.js';
+export { LearningPhase } from './05-learning.js';
+export { CodeIntelligencePhase } from './06-code-intelligence.js';
+export { HooksPhase } from './07-hooks.js';
+export { MCPPhase } from './08-mcp.js';
+export { AssetsPhase } from './09-assets.js';
+export { WorkersPhase } from './10-workers.js';
+export { ClaudeMdPhase } from './11-claude-md.js';
+export { VerificationPhase } from './12-verification.js';
+// Phase instances
+export const detectionPhase = new DetectionPhase();
+export const analysisPhase = new AnalysisPhase();
+export const configurationPhase = new ConfigurationPhase();
+export const databasePhase = new DatabasePhase();
+export const learningPhase = new LearningPhase();
+export const codeIntelligencePhase = new CodeIntelligencePhase();
+export const hooksPhase = new HooksPhase();
+export const mcpPhase = new MCPPhase();
+export const assetsPhase = new AssetsPhase();
+export const workersPhase = new WorkersPhase();
+export const claudeMdPhase = new ClaudeMdPhase();
+export const verificationPhase = new VerificationPhase();
+/**
+ * Get all default phases in order
+ */
+export function getDefaultPhases() {
+    return [
+        detectionPhase,
+        analysisPhase,
+        configurationPhase,
+        databasePhase,
+        learningPhase,
+        codeIntelligencePhase,
+        hooksPhase,
+        mcpPhase,
+        assetsPhase,
+        workersPhase,
+        claudeMdPhase,
+        verificationPhase,
+    ];
+}
+//# sourceMappingURL=index.js.map

package/v3/dist/init/phases/index.js.map

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