agentic-qe 3.15.13 → 3.15.15

package/dist/cli/chunks/{upgrade-K5PIHXRB.js → upgrade-2MWW6BT2.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.13");process.exit(0)}
-import{S as v,b as g}from"./chunk-WOCGL4QP.js";import"./chunk-ZAKQLAHT.js";v();import{Command as p}from"commander";import n from"chalk";import{createRequire as m}from"node:module";import{platform as y,arch as b}from"node:os";var N=[{packageName:"better-sqlite3",role:"SQLite storage (required \u2014 memory.db, patterns, audit)",fallback:"n/a \u2014 required",affectsFlags:[],required:!0},{packageName:"web-tree-sitter",role:"Tree-sitter WASM parser runtime (required \u2014 code intelligence)",fallback:"n/a \u2014 required",affectsFlags:[],required:!0},{packageName:"hnswlib-node",role:"Canonical HNSW vector index (default since ADR-090)",fallback:"ProgressiveHnswBackend (JS) \u2014 correct but slower on large codebases",affectsFlags:["useNativeHNSW"],required:!1},{packageName:"@ruvector/rvf-node",role:"Persistent HNSW pattern store + RVF brain export format",fallback:"SQLite-backed HNSW + JSONL brain export",affectsFlags:["useRVFPatternStore"],required:!1},{packageName:"@ruvector/solver",role:"Async native weighted PageRank on the pattern citation graph",fallback:"TypeScript power iteration \u2014 O(iterations \xD7 (nodes + edges)); no hard size limit",affectsFlags:["useSublinearSolver"],required:!1,availability:"unpublished"},{packageName:"@ruvector/attention",role:"Flash Attention with SIMD acceleration",fallback:"Plain attention \u2014 2.5\u20137\xD7 slower on large sequences",affectsFlags:["useQEFlashAttention"],required:!1},{packageName:"@ruvector/gnn",role:"GraphMAE native acceleration",fallback:"TypeScript GraphMAE \u2014 correct but slower",affectsFlags:["useGraphMAEEmbeddings"],required:!1}];function E(){let e=m(import.meta.url);return o=>{try{return e(o),{ok:!0}}catch(a){return{ok:!1,error:a instanceof Error?a:new Error(String(a))}}}}function R(e,o){return e.map(a=>{let i=o(a.packageName);if(i.ok)return{...a,status:"loaded"};if(a.availability==="unpublished")return{...a,status:"unavailable",loadError:i.error.message};let s=S(i.error),t=a.required?"required-missing":"missing";return{...a,status:t,loadError:i.error.message}})}function S(e){return e.code==="MODULE_NOT_FOUND"}var k={RUVECTOR_USE_RVF_PATTERN_STORE:"useRVFPatternStore",RUVECTOR_USE_SUBLINEAR_SOLVER:"useSublinearSolver",RUVECTOR_USE_NATIVE_HNSW:"useNativeHNSW",RUVECTOR_USE_GNN_INDEX:"useQEGNNIndex",RUVECTOR_USE_FLASH_ATTENTION:"useQEFlashAttention",RUVECTOR_USE_GRAPH_MAE_EMBEDDINGS:"useGraphMAEEmbeddings"};function h(e){let o=[];for(let[a,i]of Object.entries(k)){let s=e[a];s!==void 0&&o.push({envVar:a,value:s,flagName:i})}return o}function q(e){let o=[],a=new Map(e.natives.map(r=>[r.packageName,r]));for(let r of e.natives)r.status==="required-missing"&&o.push({severity:"error",message:`Required dependency missing: ${r.packageName} \u2014 ${r.role}`,action:`npm install ${r.packageName}`});for(let r of e.natives)r.status==="missing"&&!r.required&&o.push({severity:"warn",message:`Optional native missing: ${r.packageName} \u2014 falls back to ${r.fallback}`,action:`npm install ${r.packageName}`});for(let r of e.natives)r.status==="unavailable"&&o.push({severity:"info",message:`Optional native unavailable on npm: ${r.packageName} \u2014 using ${r.fallback}. No install action is currently available.`});let i={...e.flags};for(let r of e.envOverrides){let d=e.natives.filter(u=>u.affectsFlags.includes(r.flagName)),l=d.some(u=>u.status==="loaded"),c=d.find(u=>u.status==="missing");if((r.value==="true"||r.value==="1")&&d.length>0&&!l){let u=d.map(f=>f.packageName).join(", ");o.push({severity:"warn",message:`${r.envVar}=${r.value} requests flag ${r.flagName}=true, but required native(s) not loaded: ${u}. The flag will silently fall back.`,action:c?`npm install ${c.packageName}`:void 0})}}let s=e.natives.filter(r=>!r.required&&r.status==="missing"),t=e.natives.filter(r=>!r.required&&r.status==="unavailable");return s.length===0&&t.length===0&&e.natives.every(r=>r.status!=="required-missing")&&o.push({severity:"info",message:"All recommended native bindings are loaded \u2014 no action required."}),o}function O(e){let o=R(N,e.probe),a=h(e.env),i=q({natives:o,flags:e.flags,envOverrides:a}),s=o.filter(l=>!l.required&&l.status==="loaded").length,t=o.filter(l=>!l.required&&l.status==="missing").length,r=o.filter(l=>!l.required&&l.status==="unavailable").length,d=o.filter(l=>l.required).every(l=>l.status==="loaded");return{aqeVersion:e.aqeVersion,platform:{os:y(),arch:b(),node:process.version},natives:o,flags:e.flags,envOverrides:a,recommendations:i,summary:{requiredOk:d,optionalMissingCount:t,optionalLoadedCount:s,optionalUnavailableCount:r}}}function $(e,o){return e.summary.requiredOk?o&&e.summary.optionalMissingCount>0?1:0:2}function A(e){let o=[],a=(t="")=>o.push(t);a(""),a(n.bold.blue("  aqe upgrade \u2014 native binding report")),a(n.gray("  \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500")),a(""),a(`  AQE:       ${n.cyan(e.aqeVersion)}`),a(`  Platform:  ${n.cyan(`${e.platform.os} ${e.platform.arch}`)}`),a(`  Node:      ${n.cyan(e.platform.node)}`),a(""),a(n.blue("  Native bindings:"));for(let t of e.natives){let r=F(t.status);a(`    ${r} ${n.bold(t.packageName.padEnd(28))} ${n.gray(t.role)}`),t.status!=="loaded"&&t.loadError&&a(`        ${n.gray(t.loadError.split(`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{S as v,b as g}from"./chunk-6YVMX2TC.js";import"./chunk-XH4JMX5O.js";v();import{Command as p}from"commander";import n from"chalk";import{createRequire as m}from"node:module";import{platform as y,arch as b}from"node:os";var N=[{packageName:"better-sqlite3",role:"SQLite storage (required \u2014 memory.db, patterns, audit)",fallback:"n/a \u2014 required",affectsFlags:[],required:!0},{packageName:"web-tree-sitter",role:"Tree-sitter WASM parser runtime (required \u2014 code intelligence)",fallback:"n/a \u2014 required",affectsFlags:[],required:!0},{packageName:"hnswlib-node",role:"Canonical HNSW vector index (default since ADR-090)",fallback:"ProgressiveHnswBackend (JS) \u2014 correct but slower on large codebases",affectsFlags:["useNativeHNSW"],required:!1},{packageName:"@ruvector/rvf-node",role:"Persistent HNSW pattern store + RVF brain export format",fallback:"SQLite-backed HNSW + JSONL brain export",affectsFlags:["useRVFPatternStore"],required:!1},{packageName:"@ruvector/solver",role:"Async native weighted PageRank on the pattern citation graph",fallback:"TypeScript power iteration \u2014 O(iterations \xD7 (nodes + edges)); no hard size limit",affectsFlags:["useSublinearSolver"],required:!1,availability:"unpublished"},{packageName:"@ruvector/attention",role:"Flash Attention with SIMD acceleration",fallback:"Plain attention \u2014 2.5\u20137\xD7 slower on large sequences",affectsFlags:["useQEFlashAttention"],required:!1},{packageName:"@ruvector/gnn",role:"GraphMAE native acceleration",fallback:"TypeScript GraphMAE \u2014 correct but slower",affectsFlags:["useGraphMAEEmbeddings"],required:!1}];function E(){let e=m(import.meta.url);return o=>{try{return e(o),{ok:!0}}catch(a){return{ok:!1,error:a instanceof Error?a:new Error(String(a))}}}}function R(e,o){return e.map(a=>{let i=o(a.packageName);if(i.ok)return{...a,status:"loaded"};if(a.availability==="unpublished")return{...a,status:"unavailable",loadError:i.error.message};let s=S(i.error),t=a.required?"required-missing":"missing";return{...a,status:t,loadError:i.error.message}})}function S(e){return e.code==="MODULE_NOT_FOUND"}var k={RUVECTOR_USE_RVF_PATTERN_STORE:"useRVFPatternStore",RUVECTOR_USE_SUBLINEAR_SOLVER:"useSublinearSolver",RUVECTOR_USE_NATIVE_HNSW:"useNativeHNSW",RUVECTOR_USE_GNN_INDEX:"useQEGNNIndex",RUVECTOR_USE_FLASH_ATTENTION:"useQEFlashAttention",RUVECTOR_USE_GRAPH_MAE_EMBEDDINGS:"useGraphMAEEmbeddings"};function h(e){let o=[];for(let[a,i]of Object.entries(k)){let s=e[a];s!==void 0&&o.push({envVar:a,value:s,flagName:i})}return o}function q(e){let o=[],a=new Map(e.natives.map(r=>[r.packageName,r]));for(let r of e.natives)r.status==="required-missing"&&o.push({severity:"error",message:`Required dependency missing: ${r.packageName} \u2014 ${r.role}`,action:`npm install ${r.packageName}`});for(let r of e.natives)r.status==="missing"&&!r.required&&o.push({severity:"warn",message:`Optional native missing: ${r.packageName} \u2014 falls back to ${r.fallback}`,action:`npm install ${r.packageName}`});for(let r of e.natives)r.status==="unavailable"&&o.push({severity:"info",message:`Optional native unavailable on npm: ${r.packageName} \u2014 using ${r.fallback}. No install action is currently available.`});let i={...e.flags};for(let r of e.envOverrides){let d=e.natives.filter(u=>u.affectsFlags.includes(r.flagName)),l=d.some(u=>u.status==="loaded"),c=d.find(u=>u.status==="missing");if((r.value==="true"||r.value==="1")&&d.length>0&&!l){let u=d.map(f=>f.packageName).join(", ");o.push({severity:"warn",message:`${r.envVar}=${r.value} requests flag ${r.flagName}=true, but required native(s) not loaded: ${u}. The flag will silently fall back.`,action:c?`npm install ${c.packageName}`:void 0})}}let s=e.natives.filter(r=>!r.required&&r.status==="missing"),t=e.natives.filter(r=>!r.required&&r.status==="unavailable");return s.length===0&&t.length===0&&e.natives.every(r=>r.status!=="required-missing")&&o.push({severity:"info",message:"All recommended native bindings are loaded \u2014 no action required."}),o}function O(e){let o=R(N,e.probe),a=h(e.env),i=q({natives:o,flags:e.flags,envOverrides:a}),s=o.filter(l=>!l.required&&l.status==="loaded").length,t=o.filter(l=>!l.required&&l.status==="missing").length,r=o.filter(l=>!l.required&&l.status==="unavailable").length,d=o.filter(l=>l.required).every(l=>l.status==="loaded");return{aqeVersion:e.aqeVersion,platform:{os:y(),arch:b(),node:process.version},natives:o,flags:e.flags,envOverrides:a,recommendations:i,summary:{requiredOk:d,optionalMissingCount:t,optionalLoadedCount:s,optionalUnavailableCount:r}}}function $(e,o){return e.summary.requiredOk?o&&e.summary.optionalMissingCount>0?1:0:2}function A(e){let o=[],a=(t="")=>o.push(t);a(""),a(n.bold.blue("  aqe upgrade \u2014 native binding report")),a(n.gray("  \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500")),a(""),a(`  AQE:       ${n.cyan(e.aqeVersion)}`),a(`  Platform:  ${n.cyan(`${e.platform.os} ${e.platform.arch}`)}`),a(`  Node:      ${n.cyan(e.platform.node)}`),a(""),a(n.blue("  Native bindings:"));for(let t of e.natives){let r=F(t.status);a(`    ${r} ${n.bold(t.packageName.padEnd(28))} ${n.gray(t.role)}`),t.status!=="loaded"&&t.loadError&&a(`        ${n.gray(t.loadError.split(`
 `)[0])}`)}a(""),a(n.blue("  Flag state (after env overrides):"));let i=Object.entries(e.flags);for(let[t,r]of i){let d=r?n.green("on "):n.yellow("off");a(`    ${d}  ${t}`)}if(e.envOverrides.length>0){a(""),a(n.blue("  Env overrides in effect:"));for(let t of e.envOverrides)a(`    ${n.cyan(t.envVar)}=${n.cyan(t.value)}  ${n.gray(`\u2192 ${t.flagName}`)}`)}if(a(""),a(n.blue("  Recommendations:")),e.recommendations.length===0)a(n.gray("    (none)"));else for(let t of e.recommendations){let r=C(t.severity);a(`    ${r} ${t.message}`),t.action&&a(`        ${n.gray("\u2192")} ${n.cyan(t.action)}`)}a("");let s=e.summary.requiredOk?n.green("OK"):n.red("FAIL");return a(`  Summary:   required ${s}    optional loaded ${n.cyan(e.summary.optionalLoadedCount)} / ${n.cyan(e.summary.optionalLoadedCount+e.summary.optionalMissingCount+e.summary.optionalUnavailableCount)} (${n.cyan(e.summary.optionalUnavailableCount)} unavailable)`),a(""),o.join(`
 `)}function F(e){switch(e){case"loaded":return n.green("\u2713");case"missing":return n.yellow("\u2026");case"unavailable":return n.gray("\u2013");case"required-missing":return n.red("\u2717")}}function C(e){switch(e){case"info":return n.green("\u2713");case"warn":return n.yellow("!");case"error":return n.red("\u2717")}}function M(e){return new p("upgrade").description("Detect optional native bindings and recommend install / flag changes (read-only)").option("--json","Emit the report as JSON to stdout",!1).option("--strict","Exit non-zero if any recommended optional native is missing",!1).action(async a=>{let i=V(),s=g(),t=O({aqeVersion:i,probe:E(),env:process.env,flags:{useRVFPatternStore:s.useRVFPatternStore,useSublinearSolver:s.useSublinearSolver,useNativeHNSW:s.useNativeHNSW,useGraphMAEEmbeddings:s.useGraphMAEEmbeddings,useQEFlashAttention:s.useQEFlashAttention}});a.json?process.stdout.write(JSON.stringify(t,null,2)+`
 `):process.stdout.write(A(t)),await e($(t,a.strict===!0))})}function V(){try{return m(import.meta.url)("../../../package.json").version??"unknown"}catch{return"unknown"}}export{N as NATIVE_CATALOG,q as buildRecommendations,O as buildReport,E as createDefaultLoadProbe,M as createUpgradeCommand,R as detectNatives,$ as exitCodeFor,h as readEnvOverrides,A as renderReportHuman};

package/dist/cli/chunks/{validate-RPTS7RYJ.js → validate-PAEV3GT5.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.13");process.exit(0)}
-import{e as V}from"./chunk-VU5TBX2V.js";import"./chunk-ARJW4I2O.js";import{a as P}from"./chunk-CCMKSHAT.js";import"./chunk-5ZGM3RMH.js";import"./chunk-TCBBNUBP.js";import"./chunk-H4GG2NLO.js";import"./chunk-YSZ5OE3Z.js";import"./chunk-SSU73QAX.js";import"./chunk-QPNG5ZN2.js";import"./chunk-PHP5UBT4.js";import"./chunk-P7A4NKTZ.js";import"./chunk-3Y7TJFHU.js";import"./chunk-7CMTY45A.js";import{b as v,d as F}from"./chunk-VTOBUZL6.js";import"./chunk-KDNJ4F3P.js";import"./chunk-JRRXCODW.js";import"./chunk-XNBOGCF3.js";import"./chunk-KV4T4MXK.js";import"./chunk-TWDW32W2.js";import"./chunk-AQSVJNEH.js";import"./chunk-OCAEXYFA.js";import"./chunk-DVGRPK7A.js";import"./chunk-TOQWL2ZF.js";import"./chunk-UT2VZ33P.js";import"./chunk-GB6HBNH2.js";import"./chunk-UOC3O6RP.js";import"./chunk-NT4DBXSX.js";import"./chunk-WOCGL4QP.js";import"./chunk-J2ZIFFM6.js";import"./chunk-RF7HWBHN.js";import"./chunk-DNDL7SOS.js";import"./chunk-3Y2ROSCL.js";import"./chunk-WO274FRI.js";import"./chunk-ZAKQLAHT.js";F();import{Command as M}from"commander";import{readFileSync as A,writeFileSync as S,existsSync as C,readdirSync as O,statSync as B}from"fs";import{join as b,resolve as j,basename as I}from"path";import e from"chalk";function R(i){let n=j(i);if(!C(n))throw new Error(`Input path not found: ${n}`);if(B(n).isDirectory()){let r=[],t=O(n).filter(o=>o.endsWith(".json")).map(o=>b(n,o));for(let o of t)try{let u=v(A(o,"utf-8"));if($(u))r.push(u);else if(Array.isArray(u))for(let d of u)$(d)&&r.push(d)}catch{console.warn(e.yellow(`Warning: Could not parse ${I(o)}`))}return r}else{let r=v(A(n,"utf-8"));if($(r))return[r];if(Array.isArray(r))return r.filter($);throw new Error("Invalid input format. Expected ParallelValidationRunResult or array of results.")}}function $(i){return typeof i=="object"&&i!==null&&"runId"in i&&"model"in i&&"outcomes"in i&&Array.isArray(i.outcomes)}function D(){return P({storeQEPattern:async()=>{},searchQEPatterns:async()=>({success:!0,value:[]}),addFact:async()=>({success:!0,value:void 0}),query:async()=>({success:!0,value:{results:[],confidence:0}}),getStats:()=>({totalPatterns:0,totalFacts:0,indexHealth:1,lastCompaction:new Date})})}function T(){let i=process.cwd(),n=[b(i,".claude/skills/trust-tier-manifest.json"),b(i,".claude/skills/skills-manifest.json")];for(let g of n)if(C(g))return g;return b(i,".claude/skills/trust-tier-manifest.json")}function L(i,n,g){let r=g.format||"markdown";if(r==="markdown"||r==="both"){let t=n.generateMarkdownReport(i);if(g.output){let o=r==="both"?g.output.replace(/\.\w+$/,".md"):g.output;S(o,t),console.log(e.green(`Markdown report written to: ${o}`))}else console.log(`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{e as V}from"./chunk-ZIPAB5J6.js";import"./chunk-PYPS65P7.js";import{a as P}from"./chunk-GQABPCQE.js";import"./chunk-J3FP5UGL.js";import"./chunk-UUBIQR6A.js";import"./chunk-TDQWTSBS.js";import"./chunk-2IIXCEMS.js";import"./chunk-O6EWL5DQ.js";import"./chunk-EKP2SC77.js";import"./chunk-BBRROA3Z.js";import"./chunk-LTQVUAPH.js";import"./chunk-T66PPF4D.js";import"./chunk-337Z52QM.js";import{b as v,d as F}from"./chunk-XWIAZG3C.js";import"./chunk-5G4UFTV4.js";import"./chunk-DEKR3CTS.js";import"./chunk-4X3SWKBA.js";import"./chunk-W62OOK7A.js";import"./chunk-GCHYOPRZ.js";import"./chunk-DKX4GNRU.js";import"./chunk-PXATBHWN.js";import"./chunk-5I7357KS.js";import"./chunk-G242G224.js";import"./chunk-3HVFIITW.js";import"./chunk-BQ47GQPK.js";import"./chunk-ZWBGYJ7K.js";import"./chunk-UJABDXST.js";import"./chunk-6YVMX2TC.js";import"./chunk-SZAZQZWI.js";import"./chunk-MPFPWJTH.js";import"./chunk-FOOW4JVS.js";import"./chunk-HL2ANKN3.js";import"./chunk-BZULJMGH.js";import"./chunk-XH4JMX5O.js";F();import{Command as M}from"commander";import{readFileSync as A,writeFileSync as S,existsSync as C,readdirSync as O,statSync as B}from"fs";import{join as b,resolve as j,basename as I}from"path";import e from"chalk";function R(i){let n=j(i);if(!C(n))throw new Error(`Input path not found: ${n}`);if(B(n).isDirectory()){let r=[],t=O(n).filter(o=>o.endsWith(".json")).map(o=>b(n,o));for(let o of t)try{let u=v(A(o,"utf-8"));if($(u))r.push(u);else if(Array.isArray(u))for(let d of u)$(d)&&r.push(d)}catch{console.warn(e.yellow(`Warning: Could not parse ${I(o)}`))}return r}else{let r=v(A(n,"utf-8"));if($(r))return[r];if(Array.isArray(r))return r.filter($);throw new Error("Invalid input format. Expected ParallelValidationRunResult or array of results.")}}function $(i){return typeof i=="object"&&i!==null&&"runId"in i&&"model"in i&&"outcomes"in i&&Array.isArray(i.outcomes)}function D(){return P({storeQEPattern:async()=>{},searchQEPatterns:async()=>({success:!0,value:[]}),addFact:async()=>({success:!0,value:void 0}),query:async()=>({success:!0,value:{results:[],confidence:0}}),getStats:()=>({totalPatterns:0,totalFacts:0,indexHealth:1,lastCompaction:new Date})})}function T(){let i=process.cwd(),n=[b(i,".claude/skills/trust-tier-manifest.json"),b(i,".claude/skills/skills-manifest.json")];for(let g of n)if(C(g))return g;return b(i,".claude/skills/trust-tier-manifest.json")}function L(i,n,g){let r=g.format||"markdown";if(r==="markdown"||r==="both"){let t=n.generateMarkdownReport(i);if(g.output){let o=r==="both"?g.output.replace(/\.\w+$/,".md"):g.output;S(o,t),console.log(e.green(`Markdown report written to: ${o}`))}else console.log(`
 `+t)}if(r==="json"||r==="both"){let t=n.generateJsonReport(i);if(g.output){let o=r==="both"?g.output.replace(/\.\w+$/,".json"):g.output;S(o,t),console.log(e.green(`JSON report written to: ${o}`))}else console.log(`
 `+t)}}function W(i,n,g){let r=new M("skill").description("Skill validation and reporting (ADR-056)");return r.command("report").description("Generate aggregated report from validation results").requiredOption("-i, --input <path>","Input file or directory containing validation results").option("-o, --output <path>","Output file path (default: stdout)").option("-f, --format <format>","Output format: markdown, json, or both","markdown").option("-b, --baseline <path>","Baseline directory for regression detection").option("--detect-regressions","Enable regression detection against historical data").option("--update-manifest","Update trust tier manifest with new pass rates").option("-t, --threshold <number>","Regression threshold (0-1)",parseFloat).option("-v, --verbose","Verbose output").action(async t=>{try{t.verbose&&(console.log(e.blue(`
 Validation Result Aggregator`)),console.log(e.gray(`ADR-056 Phase 5

package/dist/cli/chunks/{validate-swarm-B2ZL556X.js → validate-swarm-ZIXACK5K.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.13");process.exit(0)}
-import{a as i,b as k,c as d,d as p}from"./chunk-VU5TBX2V.js";import"./chunk-ARJW4I2O.js";import{a as v}from"./chunk-F3YS57NF.js";import{a as h}from"./chunk-CCMKSHAT.js";import"./chunk-CE7B5LU7.js";import"./chunk-5ZGM3RMH.js";import"./chunk-CT6SAVXQ.js";import"./chunk-UDQSYWVF.js";import"./chunk-YBQH2VOP.js";import"./chunk-TSQC2KKZ.js";import"./chunk-SYV2V3PL.js";import"./chunk-E7CLYGS7.js";import"./chunk-5VMAV6T6.js";import"./chunk-TCBBNUBP.js";import"./chunk-H4GG2NLO.js";import"./chunk-YSZ5OE3Z.js";import"./chunk-SSU73QAX.js";import"./chunk-QPNG5ZN2.js";import"./chunk-PHP5UBT4.js";import"./chunk-P7A4NKTZ.js";import"./chunk-VRVMIPTM.js";import"./chunk-4OVC4RIL.js";import"./chunk-UTRV7T2N.js";import"./chunk-3Y7TJFHU.js";import"./chunk-7CMTY45A.js";import"./chunk-VTOBUZL6.js";import"./chunk-KDNJ4F3P.js";import"./chunk-JRRXCODW.js";import"./chunk-XNBOGCF3.js";import"./chunk-KV4T4MXK.js";import"./chunk-TWDW32W2.js";import"./chunk-AQSVJNEH.js";import"./chunk-OCAEXYFA.js";import"./chunk-WKGTGOYS.js";import"./chunk-DVGRPK7A.js";import"./chunk-H4H2YSFH.js";import"./chunk-NURIILUB.js";import"./chunk-TOQWL2ZF.js";import"./chunk-UT2VZ33P.js";import"./chunk-GB6HBNH2.js";import"./chunk-UOC3O6RP.js";import"./chunk-NT4DBXSX.js";import"./chunk-WOCGL4QP.js";import"./chunk-W2QWSQVE.js";import"./chunk-J2ZIFFM6.js";import"./chunk-RF7HWBHN.js";import"./chunk-IC3TQEOA.js";import"./chunk-HD7YIFOI.js";import"./chunk-DNDL7SOS.js";import"./chunk-3Y2ROSCL.js";import"./chunk-WO274FRI.js";import"./chunk-ZAKQLAHT.js";import{Command as x}from"commander";import o from"chalk";function j(e,t,n){let c=new x("validate").description("Validation commands for skills and agents");return c.command("swarm").description("Validate skills in parallel using Claude Flow swarms (ADR-056)").option("-s, --skills <skills>",'Comma-separated list of skills to validate, or "all" for P0 skills',"all").option("-m, --models <models>","Comma-separated list of models to validate against",p.join(",")).option("-t, --topology <topology>","Swarm topology: hierarchical or mesh","hierarchical").option("--max-concurrent <number>","Maximum concurrent skill validations",String(i.maxConcurrentSkills)).option("--max-models <number>","Maximum concurrent models per skill",String(i.maxConcurrentModels)).option("--timeout <ms>","Timeout per validation in milliseconds",String(i.timeout)).option("--no-retry","Disable retries on failure").option("-v, --verbose","Show detailed output").option("--json","Output results as JSON").action(async l=>{if(await n())try{console.log(o.blue(`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{a as i,b as k,c as d,d as p}from"./chunk-ZIPAB5J6.js";import"./chunk-PYPS65P7.js";import{a as v}from"./chunk-2LUTPMBO.js";import{a as h}from"./chunk-GQABPCQE.js";import"./chunk-RDMRY7CT.js";import"./chunk-J3FP5UGL.js";import"./chunk-W5ZJG2OU.js";import"./chunk-MIA447GY.js";import"./chunk-QRKTBSZT.js";import"./chunk-RBKUU7WF.js";import"./chunk-Q6I4SIUU.js";import"./chunk-KCQNFBBR.js";import"./chunk-ZYJB6FML.js";import"./chunk-UUBIQR6A.js";import"./chunk-TDQWTSBS.js";import"./chunk-2IIXCEMS.js";import"./chunk-O6EWL5DQ.js";import"./chunk-EKP2SC77.js";import"./chunk-BBRROA3Z.js";import"./chunk-LTQVUAPH.js";import"./chunk-YUS6TWAL.js";import"./chunk-AP2W7Z3A.js";import"./chunk-BP5T3OEV.js";import"./chunk-T66PPF4D.js";import"./chunk-337Z52QM.js";import"./chunk-XWIAZG3C.js";import"./chunk-5G4UFTV4.js";import"./chunk-DEKR3CTS.js";import"./chunk-4X3SWKBA.js";import"./chunk-W62OOK7A.js";import"./chunk-GCHYOPRZ.js";import"./chunk-DKX4GNRU.js";import"./chunk-PXATBHWN.js";import"./chunk-6NBRMD25.js";import"./chunk-5I7357KS.js";import"./chunk-QFGYH6HD.js";import"./chunk-LJMYRTJ7.js";import"./chunk-G242G224.js";import"./chunk-3HVFIITW.js";import"./chunk-BQ47GQPK.js";import"./chunk-ZWBGYJ7K.js";import"./chunk-UJABDXST.js";import"./chunk-6YVMX2TC.js";import"./chunk-DURD37JZ.js";import"./chunk-SZAZQZWI.js";import"./chunk-MPFPWJTH.js";import"./chunk-AOKKUB5F.js";import"./chunk-T4GE7MPI.js";import"./chunk-FOOW4JVS.js";import"./chunk-HL2ANKN3.js";import"./chunk-BZULJMGH.js";import"./chunk-XH4JMX5O.js";import{Command as x}from"commander";import o from"chalk";function j(e,t,n){let c=new x("validate").description("Validation commands for skills and agents");return c.command("swarm").description("Validate skills in parallel using Claude Flow swarms (ADR-056)").option("-s, --skills <skills>",'Comma-separated list of skills to validate, or "all" for P0 skills',"all").option("-m, --models <models>","Comma-separated list of models to validate against",p.join(",")).option("-t, --topology <topology>","Swarm topology: hierarchical or mesh","hierarchical").option("--max-concurrent <number>","Maximum concurrent skill validations",String(i.maxConcurrentSkills)).option("--max-models <number>","Maximum concurrent models per skill",String(i.maxConcurrentModels)).option("--timeout <ms>","Timeout per validation in milliseconds",String(i.timeout)).option("--no-retry","Disable retries on failure").option("-v, --verbose","Show detailed output").option("--json","Output results as JSON").action(async l=>{if(await n())try{console.log(o.blue(`
  Swarm Skill Validation
 `));let r=l.skills==="all"?[...d]:l.skills.split(",").map(y=>y.trim()),u=l.models.split(",").map(y=>y.trim()),g=P(l.topology),a={topology:g,maxConcurrentSkills:parseInt(l.maxConcurrent,10)||i.maxConcurrentSkills,maxConcurrentModels:parseInt(l.maxModels,10)||i.maxConcurrentModels,timeout:parseInt(l.timeout,10)||i.timeout,continueOnFailure:!0,retry:l.retry!==!1?i.retry:void 0};l.verbose&&(console.log(o.gray("Configuration:")),console.log(o.gray(`  Topology: ${a.topology}`)),console.log(o.gray(`  Skills: ${r.length}`)),console.log(o.gray(`  Models: ${u.length}`)),console.log(o.gray(`  Max Concurrent Skills: ${a.maxConcurrentSkills}`)),console.log(o.gray(`  Max Concurrent Models: ${a.maxConcurrentModels}`)),console.log(o.gray(`  Timeout: ${a.timeout}ms`)),console.log(o.gray(`  Retry: ${a.retry?"enabled":"disabled"}`)),console.log("")),console.log(o.cyan(`  Skills: ${r.join(", ")}`)),console.log(o.cyan(`  Models: ${u.join(", ")}`)),console.log(o.cyan(`  Topology: ${g}`)),console.log("");let m=await R(e),f=h(m),C=k(a,f),$=Date.now();console.log(o.yellow(`  Starting parallel validation...
 `));let b=await C.validateSkillsParallel(r,u),s=C.getSummary(b),w=Date.now()-$;l.json?T(s):D(s,l.verbose),console.log(o.blue(`

package/dist/cli/chunks/visual-security-GXGSFBVA.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{a}from"./chunk-FTRSS64D.js";import"./chunk-XIVVTYM2.js";import"./chunk-DUKE27HC.js";import"./chunk-6LE362LZ.js";import"./chunk-T66PPF4D.js";import"./chunk-337Z52QM.js";import"./chunk-XWIAZG3C.js";import"./chunk-5G4UFTV4.js";import"./chunk-DEKR3CTS.js";import"./chunk-4X3SWKBA.js";import"./chunk-W62OOK7A.js";import"./chunk-GCHYOPRZ.js";import"./chunk-DKX4GNRU.js";import"./chunk-PXATBHWN.js";import"./chunk-5I7357KS.js";import"./chunk-QFGYH6HD.js";import"./chunk-G242G224.js";import"./chunk-3HVFIITW.js";import"./chunk-BQ47GQPK.js";import"./chunk-ZWBGYJ7K.js";import"./chunk-UJABDXST.js";import"./chunk-6YVMX2TC.js";import"./chunk-SZAZQZWI.js";import"./chunk-MPFPWJTH.js";import"./chunk-FOOW4JVS.js";import"./chunk-HL2ANKN3.js";import"./chunk-BZULJMGH.js";import"./chunk-XH4JMX5O.js";export{a as VisualSecurityTool};

package/dist/cli/chunks/{web-tree-sitter-K4DUJC32.js → web-tree-sitter-VLTXZFAB.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.13");process.exit(0)}
-import"./chunk-ZAKQLAHT.js";import{createRequire as t}from"module";var o=t(import.meta.url),e=o("web-tree-sitter"),i=e,{RuvectorLayer:n,TensorCompress:a,differentiableSearch:c,hierarchicalForward:s,getCompressionLevel:l,init:p,FlashAttention:m,DotProductAttention:u,MultiHeadAttention:d,HyperbolicAttention:A,LinearAttention:f,MoEAttention:h,SonaEngine:_,pipeline:b}=e||{};export{u as DotProductAttention,m as FlashAttention,A as HyperbolicAttention,f as LinearAttention,h as MoEAttention,d as MultiHeadAttention,n as RuvectorLayer,_ as SonaEngine,a as TensorCompress,i as default,c as differentiableSearch,l as getCompressionLevel,s as hierarchicalForward,p as init,b as pipeline};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import"./chunk-XH4JMX5O.js";import{createRequire as t}from"module";var o=t(import.meta.url),e=o("web-tree-sitter"),i=e,{RuvectorLayer:n,TensorCompress:a,differentiableSearch:c,hierarchicalForward:s,getCompressionLevel:l,init:p,FlashAttention:m,DotProductAttention:u,MultiHeadAttention:d,HyperbolicAttention:A,LinearAttention:f,MoEAttention:h,SonaEngine:_,pipeline:b}=e||{};export{u as DotProductAttention,m as FlashAttention,A as HyperbolicAttention,f as LinearAttention,h as MoEAttention,d as MultiHeadAttention,n as RuvectorLayer,_ as SonaEngine,a as TensorCompress,i as default,c as differentiableSearch,l as getCompressionLevel,s as hierarchicalForward,p as init,b as pipeline};

package/dist/cli/chunks/{windsurf-installer-OK2AJN35.js → windsurf-installer-VELMLOZF.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.13");process.exit(0)}
-import{b as u}from"./chunk-FZ76G4QJ.js";import{a as f,e as d}from"./chunk-3Y2ROSCL.js";import"./chunk-ZAKQLAHT.js";d();import{existsSync as i,mkdirSync as h,readFileSync as g,writeFileSync as a}from"fs";import{join as p,dirname as v}from"path";var c=class{projectRoot;overwrite;options;generator;constructor(e){this.projectRoot=e.projectRoot,this.overwrite=e.overwrite??!1,this.options=e,this.generator=u()}async install(){let e={success:!0,mcpConfigured:!1,rulesInstalled:!1,errors:[],configPath:"",rulesPath:""};try{let t=this.generator.generateMcpConfig("windsurf",{memoryBackend:this.options.memoryBackend}),r=p(this.projectRoot,t.path);if(e.configPath=r,!i(r)||this.overwrite){let o=v(r);if(i(o)||h(o,{recursive:!0}),i(r)&&this.overwrite){let m=this.mergeExistingConfig(r,t.content);a(r,m)}else a(r,t.content);e.mcpConfigured=!0}let s=this.generator.generateBehavioralRules("windsurf"),n=p(this.projectRoot,s.path);if(e.rulesPath=n,!i(n)||this.overwrite){if(i(n)&&this.overwrite){let o=this.mergeExistingRules(n,s.content);a(n,o)}else a(n,s.content);e.rulesInstalled=!0}}catch(t){e.success=!1,e.errors.push(`Windsurf installation failed: ${f(t)}`)}return e}mergeExistingConfig(e,t){try{let r=JSON.parse(g(e,"utf-8")),s=JSON.parse(t);return r.mcpServers||(r.mcpServers={}),Object.assign(r.mcpServers,s.mcpServers),JSON.stringify(r,null,2)+`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{b as u}from"./chunk-JCQGJGGZ.js";import{a as f,e as d}from"./chunk-HL2ANKN3.js";import"./chunk-XH4JMX5O.js";d();import{existsSync as i,mkdirSync as h,readFileSync as g,writeFileSync as a}from"fs";import{join as p,dirname as v}from"path";var c=class{projectRoot;overwrite;options;generator;constructor(e){this.projectRoot=e.projectRoot,this.overwrite=e.overwrite??!1,this.options=e,this.generator=u()}async install(){let e={success:!0,mcpConfigured:!1,rulesInstalled:!1,errors:[],configPath:"",rulesPath:""};try{let t=this.generator.generateMcpConfig("windsurf",{memoryBackend:this.options.memoryBackend}),r=p(this.projectRoot,t.path);if(e.configPath=r,!i(r)||this.overwrite){let o=v(r);if(i(o)||h(o,{recursive:!0}),i(r)&&this.overwrite){let m=this.mergeExistingConfig(r,t.content);a(r,m)}else a(r,t.content);e.mcpConfigured=!0}let s=this.generator.generateBehavioralRules("windsurf"),n=p(this.projectRoot,s.path);if(e.rulesPath=n,!i(n)||this.overwrite){if(i(n)&&this.overwrite){let o=this.mergeExistingRules(n,s.content);a(n,o)}else a(n,s.content);e.rulesInstalled=!0}}catch(t){e.success=!1,e.errors.push(`Windsurf installation failed: ${f(t)}`)}return e}mergeExistingConfig(e,t){try{let r=JSON.parse(g(e,"utf-8")),s=JSON.parse(t);return r.mcpServers||(r.mcpServers={}),Object.assign(r.mcpServers,s.mcpServers),JSON.stringify(r,null,2)+`
 `}catch{return t}}mergeExistingRules(e,t){try{let r=g(e,"utf-8");return r.includes("Agentic QE")||r.includes("fleet_init")?r:r.trimEnd()+`
 
 ---

package/dist/cli/chunks/witness-chain-MRJKVCOW.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{a,b,c,d,e,f,g}from"./chunk-QRKTBSZT.js";import"./chunk-3HVFIITW.js";import"./chunk-BQ47GQPK.js";import"./chunk-ZWBGYJ7K.js";import"./chunk-UJABDXST.js";import"./chunk-6YVMX2TC.js";import"./chunk-XH4JMX5O.js";export{c as PersistentWitnessChain,a as SPRTAccumulator,b as WitnessChain,f as createPersistentWitnessChain,e as createWitnessChain,d as createWitnessChainSQLitePersistence,g as isWitnessChainFeatureEnabled};

package/dist/cli/chunks/witness-chain-WWHJKITG.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{a as h,b as i,c as j,d as k}from"./chunk-TODNOP7C.js";import"./chunk-2ZFLULL4.js";import{a,b,c,d,e,f,g}from"./chunk-ERN56H6S.js";import"./chunk-T66PPF4D.js";import"./chunk-337Z52QM.js";import"./chunk-XWIAZG3C.js";import"./chunk-5G4UFTV4.js";import"./chunk-DEKR3CTS.js";import"./chunk-4X3SWKBA.js";import"./chunk-W62OOK7A.js";import"./chunk-GCHYOPRZ.js";import"./chunk-DKX4GNRU.js";import"./chunk-PXATBHWN.js";import"./chunk-5I7357KS.js";import"./chunk-G242G224.js";import"./chunk-3HVFIITW.js";import"./chunk-BQ47GQPK.js";import"./chunk-ZWBGYJ7K.js";import"./chunk-UJABDXST.js";import"./chunk-6YVMX2TC.js";import"./chunk-SZAZQZWI.js";import"./chunk-MPFPWJTH.js";import"./chunk-FOOW4JVS.js";import"./chunk-HL2ANKN3.js";import"./chunk-BZULJMGH.js";import"./chunk-XH4JMX5O.js";export{g as CHAIN_REANCHOR_ACTION,a as GENESIS_PREV_HASH,h as WitnessChain,k as _resetWitnessChainForTests,j as createWitnessChain,i as getWitnessChain,d as hashWith,e as serializeEntry,b as sha256,c as shake256,f as signaturePayload};

package/dist/cli/chunks/{witness-chain-repair-L6Y5RFXR.js → witness-chain-repair-5SAXPETG.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.13");process.exit(0)}
-import{a as E}from"./chunk-TWJTK4CC.js";import"./chunk-GHM6MQNK.js";import{b as R,c as b,e as A,h as y,k as C}from"./chunk-XEAEYC6Y.js";import"./chunk-3Y7TJFHU.js";import"./chunk-7CMTY45A.js";import"./chunk-VTOBUZL6.js";import"./chunk-KDNJ4F3P.js";import"./chunk-JRRXCODW.js";import"./chunk-XNBOGCF3.js";import"./chunk-KV4T4MXK.js";import"./chunk-TWDW32W2.js";import"./chunk-AQSVJNEH.js";import"./chunk-OCAEXYFA.js";import"./chunk-DVGRPK7A.js";import"./chunk-TOQWL2ZF.js";import"./chunk-UT2VZ33P.js";import"./chunk-GB6HBNH2.js";import"./chunk-UOC3O6RP.js";import"./chunk-NT4DBXSX.js";import"./chunk-WOCGL4QP.js";import"./chunk-J2ZIFFM6.js";import"./chunk-RF7HWBHN.js";import{d as g,e as _}from"./chunk-DNDL7SOS.js";import"./chunk-3Y2ROSCL.js";import"./chunk-WO274FRI.js";import"./chunk-ZAKQLAHT.js";_();import{existsSync as v}from"node:fs";import{basename as I}from"node:path";var w={includeArchive:!0};function l(e){let r=n=>C(e,n)?e.prepare(`SELECT COUNT(*) AS n FROM ${n}`).get().n:0;return{live:r("witness_chain"),archive:r("witness_chain_archive")}}function O(e){return{status:e.status,entriesChecked:e.entriesChecked,forks:e.forks.length,unacknowledgedForks:e.forks.length-e.acknowledgedForks.length,...e.tamperedAt!==void 0?{tamperedAt:e.tamperedAt}:{},...e.tamperReason?{tamperReason:e.tamperReason}:{}}}function $(e){return e.forkDetails.filter(r=>!r.acknowledged).map(({id:r,parentId:n,prevHash:s,actionHash:c})=>({id:r,parentId:n,prevHash:s,actionHash:c}))}function x(e,r){let n=new Set,s=e.prepare("SELECT prev_hash FROM witness_chain UNION ALL SELECT prev_hash FROM witness_chain_archive").pluck().iterate();for(let t of s)n.add(t);let c=[],a=new Set;for(let t of["witness_chain","witness_chain_archive"]){let f=e.prepare(`SELECT * FROM ${t} ORDER BY id ASC`).iterate();for(let o of f){if(o.id===r||a.has(o.id))continue;a.add(o.id);let i=A(o);!n.has(b(i))&&!n.has(R(i))&&c.push({id:o.id,hash:y(o)})}}return c.sort((t,f)=>t.id-f.id)}function S(e){return`Refusing to repair: tampering detected at id=${e.tamperedAt} (${e.tamperReason}). Only accidental forks can be re-anchored; restore from a backup and investigate.`}function M(e){let r=`${e}.bak-${Math.floor(Date.now()/1e3)}`;if(!v(r))return r;let n=1;for(;v(`${r}-${n}`);)n++;return`${r}-${n}`}function W(e,r){let n=M(e),s=g(e,{readonly:!0,fileMustExist:!0});try{s.prepare("VACUUM INTO ?").run(n)}finally{s.close()}let c=g(n,{readonly:!0,fileMustExist:!0});try{let a=c.pragma("integrity_check",{simple:!0});if(a!=="ok")throw new Error(`backup integrity_check failed: ${String(a)}`);let t=l(c);if(t.live!==r.live||t.archive!==r.archive)throw new Error(`backup holds ${JSON.stringify(t)} witness rows, expected ${JSON.stringify(r)}`)}finally{c.close()}return n}async function L(e,r){let n=r.dryRun===!0,s=new E(e,r.keyManager??void 0);await s.initialize();let c=l(e),a=s.verify(w),t={dryRun:n,before:O(a),rowsBefore:c,rowsAfter:c};if(a.tampered)return{...t,action:"refused",message:S(a),forksAcknowledged:[]};let f=$(a);if(f.length===0){let d=a.forks.length>0?`Nothing to repair: all ${a.forks.length} fork(s) are already re-anchored.`:"Nothing to repair: the audit chain has no forks.";return{...t,action:"none",message:d,forksAcknowledged:[]}}if(n)return{...t,action:"would-reanchor",forksAcknowledged:f.map(d=>d.id),message:`Dry run: would back up the database and append a CHAIN_REANCHOR entry acknowledging ${f.length} fork(s). Nothing was written.`};let o,i=e.transaction(()=>{let d=l(e),p=s.verify(w);if(p.tampered)return{kind:"refused",check:p};let h=$(p);if(h.length===0)return{kind:"noop"};o=W(r.dbPath,d);let m=e.prepare("SELECT * FROM witness_chain ORDER BY id DESC LIMIT 1").get(),T=s.append("CHAIN_REANCHOR",{reason:"fork-repair",issue:"https://github.com/proffesor-for-testing/agentic-qe/issues/753",note:"Acknowledges accidental forks from pre-3.14.5 concurrent appends; no rows were changed.",forkCount:h.length,forks:h,pins:x(e,m.id),verifiedTipId:m.id,verifiedTipHash:y(m),entriesChecked:p.entriesChecked,rows:d,backup:I(o)},r.actor??"aqe-audit-repair"),k=l(e);if(k.live!==d.live+1||k.archive!==d.archive)throw new Error(`row-count check failed: before ${JSON.stringify(d)}, after ${JSON.stringify(k)}`);return{kind:"reanchored",entry:T,forks:h,txAfter:k}}).immediate();if(i.kind==="refused")return{...t,action:"refused",message:S(i.check),forksAcknowledged:[]};if(i.kind==="noop")return{...t,action:"none",message:"Nothing to repair (another process re-anchored first).",forksAcknowledged:[]};let u=s.verify(w),N=u.valid&&!u.tampered;return{...t,action:"reanchored",after:O(u),rowsAfter:i.txAfter,forksAcknowledged:i.forks.map(d=>d.id),reanchorId:i.entry.id,backupPath:o,message:N?`Re-anchored ${i.forks.length} fork(s) with CHAIN_REANCHOR id=${i.entry.id}; chain now ${u.status}. Backup: ${o}`:`Appended CHAIN_REANCHOR id=${i.entry.id}, but the chain still verifies as ${u.status}. Backup: ${o}`}}export{L as repairWitnessChainForks};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{a as E}from"./chunk-TODNOP7C.js";import"./chunk-2ZFLULL4.js";import{b as R,c as b,e as A,h as y,k as C}from"./chunk-ERN56H6S.js";import"./chunk-T66PPF4D.js";import"./chunk-337Z52QM.js";import"./chunk-XWIAZG3C.js";import"./chunk-5G4UFTV4.js";import"./chunk-DEKR3CTS.js";import"./chunk-4X3SWKBA.js";import"./chunk-W62OOK7A.js";import"./chunk-GCHYOPRZ.js";import"./chunk-DKX4GNRU.js";import"./chunk-PXATBHWN.js";import"./chunk-5I7357KS.js";import"./chunk-G242G224.js";import"./chunk-3HVFIITW.js";import"./chunk-BQ47GQPK.js";import"./chunk-ZWBGYJ7K.js";import"./chunk-UJABDXST.js";import"./chunk-6YVMX2TC.js";import"./chunk-SZAZQZWI.js";import"./chunk-MPFPWJTH.js";import{d as g,e as _}from"./chunk-FOOW4JVS.js";import"./chunk-HL2ANKN3.js";import"./chunk-BZULJMGH.js";import"./chunk-XH4JMX5O.js";_();import{existsSync as v}from"node:fs";import{basename as I}from"node:path";var w={includeArchive:!0};function l(e){let r=n=>C(e,n)?e.prepare(`SELECT COUNT(*) AS n FROM ${n}`).get().n:0;return{live:r("witness_chain"),archive:r("witness_chain_archive")}}function O(e){return{status:e.status,entriesChecked:e.entriesChecked,forks:e.forks.length,unacknowledgedForks:e.forks.length-e.acknowledgedForks.length,...e.tamperedAt!==void 0?{tamperedAt:e.tamperedAt}:{},...e.tamperReason?{tamperReason:e.tamperReason}:{}}}function $(e){return e.forkDetails.filter(r=>!r.acknowledged).map(({id:r,parentId:n,prevHash:s,actionHash:c})=>({id:r,parentId:n,prevHash:s,actionHash:c}))}function x(e,r){let n=new Set,s=e.prepare("SELECT prev_hash FROM witness_chain UNION ALL SELECT prev_hash FROM witness_chain_archive").pluck().iterate();for(let t of s)n.add(t);let c=[],a=new Set;for(let t of["witness_chain","witness_chain_archive"]){let f=e.prepare(`SELECT * FROM ${t} ORDER BY id ASC`).iterate();for(let o of f){if(o.id===r||a.has(o.id))continue;a.add(o.id);let i=A(o);!n.has(b(i))&&!n.has(R(i))&&c.push({id:o.id,hash:y(o)})}}return c.sort((t,f)=>t.id-f.id)}function S(e){return`Refusing to repair: tampering detected at id=${e.tamperedAt} (${e.tamperReason}). Only accidental forks can be re-anchored; restore from a backup and investigate.`}function M(e){let r=`${e}.bak-${Math.floor(Date.now()/1e3)}`;if(!v(r))return r;let n=1;for(;v(`${r}-${n}`);)n++;return`${r}-${n}`}function W(e,r){let n=M(e),s=g(e,{readonly:!0,fileMustExist:!0});try{s.prepare("VACUUM INTO ?").run(n)}finally{s.close()}let c=g(n,{readonly:!0,fileMustExist:!0});try{let a=c.pragma("integrity_check",{simple:!0});if(a!=="ok")throw new Error(`backup integrity_check failed: ${String(a)}`);let t=l(c);if(t.live!==r.live||t.archive!==r.archive)throw new Error(`backup holds ${JSON.stringify(t)} witness rows, expected ${JSON.stringify(r)}`)}finally{c.close()}return n}async function L(e,r){let n=r.dryRun===!0,s=new E(e,r.keyManager??void 0);await s.initialize();let c=l(e),a=s.verify(w),t={dryRun:n,before:O(a),rowsBefore:c,rowsAfter:c};if(a.tampered)return{...t,action:"refused",message:S(a),forksAcknowledged:[]};let f=$(a);if(f.length===0){let d=a.forks.length>0?`Nothing to repair: all ${a.forks.length} fork(s) are already re-anchored.`:"Nothing to repair: the audit chain has no forks.";return{...t,action:"none",message:d,forksAcknowledged:[]}}if(n)return{...t,action:"would-reanchor",forksAcknowledged:f.map(d=>d.id),message:`Dry run: would back up the database and append a CHAIN_REANCHOR entry acknowledging ${f.length} fork(s). Nothing was written.`};let o,i=e.transaction(()=>{let d=l(e),p=s.verify(w);if(p.tampered)return{kind:"refused",check:p};let h=$(p);if(h.length===0)return{kind:"noop"};o=W(r.dbPath,d);let m=e.prepare("SELECT * FROM witness_chain ORDER BY id DESC LIMIT 1").get(),T=s.append("CHAIN_REANCHOR",{reason:"fork-repair",issue:"https://github.com/proffesor-for-testing/agentic-qe/issues/753",note:"Acknowledges accidental forks from pre-3.14.5 concurrent appends; no rows were changed.",forkCount:h.length,forks:h,pins:x(e,m.id),verifiedTipId:m.id,verifiedTipHash:y(m),entriesChecked:p.entriesChecked,rows:d,backup:I(o)},r.actor??"aqe-audit-repair"),k=l(e);if(k.live!==d.live+1||k.archive!==d.archive)throw new Error(`row-count check failed: before ${JSON.stringify(d)}, after ${JSON.stringify(k)}`);return{kind:"reanchored",entry:T,forks:h,txAfter:k}}).immediate();if(i.kind==="refused")return{...t,action:"refused",message:S(i.check),forksAcknowledged:[]};if(i.kind==="noop")return{...t,action:"none",message:"Nothing to repair (another process re-anchored first).",forksAcknowledged:[]};let u=s.verify(w),N=u.valid&&!u.tampered;return{...t,action:"reanchored",after:O(u),rowsAfter:i.txAfter,forksAcknowledged:i.forks.map(d=>d.id),reanchorId:i.entry.id,backupPath:o,message:N?`Re-anchored ${i.forks.length} fork(s) with CHAIN_REANCHOR id=${i.entry.id}; chain now ${u.status}. Backup: ${o}`:`Appended CHAIN_REANCHOR id=${i.entry.id}, but the chain still verifies as ${u.status}. Backup: ${o}`}}export{L as repairWitnessChainForks};

package/dist/cli/chunks/{witness-chain-verifier-N4CW7FZX.js → witness-chain-verifier-MIDWD4JS.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.13");process.exit(0)}
-import{g as a,h as b,i as c,j as d,k as e}from"./chunk-XEAEYC6Y.js";import"./chunk-ZAKQLAHT.js";export{a as CHAIN_REANCHOR_ACTION,c as WitnessChainVerifier,b as ownHash,e as tableExists,d as verifyWitnessChain};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{g as a,h as b,i as c,j as d,k as e}from"./chunk-ERN56H6S.js";import"./chunk-XH4JMX5O.js";export{a as CHAIN_REANCHOR_ACTION,c as WitnessChainVerifier,b as ownHash,e as tableExists,d as verifyWitnessChain};

package/dist/cli/chunks/{witness-key-manager-TDNPS3WD.js → witness-key-manager-OSVCWOB2.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.13");process.exit(0)}
-import{a,b,c}from"./chunk-GHM6MQNK.js";import"./chunk-J2ZIFFM6.js";import"./chunk-RF7HWBHN.js";import"./chunk-ZAKQLAHT.js";export{a as WitnessKeyManager,c as _resetDefaultWitnessKeyManagerForTests,b as getDefaultWitnessKeyManager};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{a,b,c}from"./chunk-2ZFLULL4.js";import"./chunk-SZAZQZWI.js";import"./chunk-MPFPWJTH.js";import"./chunk-XH4JMX5O.js";export{a as WitnessKeyManager,c as _resetDefaultWitnessKeyManagerForTests,b as getDefaultWitnessKeyManager};

package/dist/cli/chunks/{workflow-XRZA3YCY.js → workflow-MK7A7QCX.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.13");process.exit(0)}
-import{b as $}from"./chunk-G77ERMUD.js";import"./chunk-E56B6IDX.js";import{a as k,b as W,c as b,g as C}from"./chunk-NU3W5WFT.js";import"./chunk-5MDERQH3.js";import{c as v}from"./chunk-VTOBUZL6.js";import"./chunk-NURIILUB.js";import"./chunk-3Y2ROSCL.js";import"./chunk-ZAKQLAHT.js";import{Command as D}from"commander";import o from"chalk";function O(f,i){let h=f.indexOf("=");return h>0&&(i[f.substring(0,h)]=f.substring(h+1)),i}function V(f,i,h){let m=new D("workflow").description("Manage QE workflows and pipelines (ADR-041)");return m.command("run <file>").description("Execute a QE pipeline from YAML file").option("-w, --watch","Watch execution progress").option("-v, --verbose","Show detailed output").option("--params <json>","Additional parameters as JSON","{}").action(async(n,t)=>{if(!await h())return;let c=(await import("path")).resolve(n);try{console.log(o.blue(`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{b as $}from"./chunk-GV2QE5TO.js";import"./chunk-AHMWD6JG.js";import{a as k,b as W,c as b,g as C}from"./chunk-7XB3FCKM.js";import"./chunk-L32JNNKL.js";import{c as v}from"./chunk-XWIAZG3C.js";import"./chunk-LJMYRTJ7.js";import"./chunk-HL2ANKN3.js";import"./chunk-XH4JMX5O.js";import{Command as D}from"commander";import o from"chalk";function O(f,i){let h=f.indexOf("=");return h>0&&(i[f.substring(0,h)]=f.substring(h+1)),i}function V(f,i,h){let m=new D("workflow").description("Manage QE workflows and pipelines (ADR-041)");return m.command("run <file>").description("Execute a QE pipeline from YAML file").option("-w, --watch","Watch execution progress").option("-v, --verbose","Show detailed output").option("--params <json>","Additional parameters as JSON","{}").action(async(n,t)=>{if(!await h())return;let c=(await import("path")).resolve(n);try{console.log(o.blue(`
  Running workflow from: ${n}
 `));let l=k(c);if(!l.success||!l.workflow){console.log(o.red("Failed to parse pipeline:"));for(let d of l.errors)console.log(o.red(`   ${d}`));await i(1)}let u={...v(t.params,"params")};if(l.pipeline){for(let d of l.pipeline.stages)if(d.params)for(let[y,p]of Object.entries(d.params))u[y]=p}if(!f.workflowOrchestrator.getWorkflow(l.workflow.id)){let d=f.workflowOrchestrator.registerWorkflow(l.workflow);d.success||(console.log(o.red(`Failed to register workflow: ${d.error.message}`)),await i(1))}let g=await f.workflowOrchestrator.executeWorkflow(l.workflow.id,u);if(!g.success){console.log(o.red(`Failed to start workflow: ${g.error.message}`)),await i(1);return}let a=g.value;if(console.log(o.cyan(`  Execution ID: ${a}`)),console.log(o.gray(`  Workflow: ${l.workflow.name}`)),console.log(o.gray(`  Stages: ${l.workflow.steps.length}`)),console.log(""),t.watch){console.log(o.blue(`Workflow Progress:
 `));let d,y=Date.now();for(;;){let w=f.workflowOrchestrator.getWorkflowStatus(a);if(!w)break;if(!d||d.progress!==w.progress||d.status!==w.status||JSON.stringify(d.currentSteps)!==JSON.stringify(w.currentSteps)){process.stdout.write("\r\x1B[K");let S="\u2588".repeat(Math.floor(w.progress/5))+"\u2591".repeat(20-Math.floor(w.progress/5)),R=w.status==="completed"?o.green:w.status==="failed"?o.red:w.status==="running"?o.yellow:o.gray;console.log(`  [${S}] ${w.progress}% - ${R(w.status)}`),w.currentSteps.length>0&&t.verbose&&console.log(o.gray(`    Running: ${w.currentSteps.join(", ")}`)),d=w}if(w.status==="completed"||w.status==="failed"||w.status==="cancelled")break;await new Promise(S=>setTimeout(S,500))}let p=f.workflowOrchestrator.getWorkflowStatus(a);if(p){console.log("");let w=p.duration||Date.now()-y;p.status==="completed"?(console.log(o.green("Workflow completed successfully")),console.log(o.gray(`   Duration: ${$(w)}`)),console.log(o.gray(`   Completed: ${p.completedSteps.length} stages`)),p.skippedSteps.length>0&&console.log(o.yellow(`   Skipped: ${p.skippedSteps.length} stages`))):p.status==="failed"?(console.log(o.red("Workflow failed")),console.log(o.red(`   Error: ${p.error}`)),console.log(o.gray(`   Failed stages: ${p.failedSteps.join(", ")}`))):console.log(o.yellow(`Workflow ${p.status}`))}console.log(""),await i(p?.status==="completed"?0:1);return}else console.log(o.green("Workflow execution started")),console.log(o.gray(`   Use 'aqe workflow status ${a}' to check progress`));console.log(""),await i(0)}catch(l){console.error(o.red(`
@@ -35,10 +35,10 @@ Workflow cancelled: ${n}
 `)):console.log(o.red(`
 Failed to cancel workflow: ${t.error.message}
 `)),await i(t.success?0:1)}catch(t){console.error(o.red(`
-Failed to cancel workflow:`),t),await i(1)}}),m.command("browser-list").description("List available browser workflow templates").action(async()=>{try{let{BrowserWorkflowTool:n}=await import("./browser-workflow-G6IASEAP.js"),e=await new n().invoke({});if(e.success&&e.data){console.log(o.blue(`
+Failed to cancel workflow:`),t),await i(1)}}),m.command("browser-list").description("List available browser workflow templates").action(async()=>{try{let{BrowserWorkflowTool:n}=await import("./browser-workflow-WLZGR6SB.js"),e=await new n().invoke({});if(e.success&&e.data){console.log(o.blue(`
  Browser Workflow Templates:
 `));for(let c of e.data.availableTemplates)console.log(`  ${o.cyan(c)}`);console.log("")}else console.log(o.red(`Failed: ${e.error||"Unknown error"}`));await i(0)}catch(n){console.error(o.red(`
-Failed:`),n),await i(1)}}),m.command("browser-load [template]").description("Load and validate a browser workflow template or inline YAML").option("--yaml <yaml>","Inline YAML workflow definition").option("-v, --var <key=value>","Variable override (repeatable)",O,{}).option("-F, --format <format>","Output format (text|json)","text").option("-o, --output <path>","Write output to file").action(async(n,t)=>{try{let{BrowserWorkflowTool:e}=await import("./browser-workflow-G6IASEAP.js"),{writeOutput:c,toJSON:l}=await import("./ci-output-JTCLLNOQ.js"),s=new e,u={variables:t.var||{}};if(t.yaml)u.workflowYaml=t.yaml;else if(n)if(n.endsWith(".yaml")||n.endsWith(".yml")){let g=await import("fs"),d=(await import("path")).resolve(n);g.existsSync(d)||(console.log(o.red(`
+Failed:`),n),await i(1)}}),m.command("browser-load [template]").description("Load and validate a browser workflow template or inline YAML").option("--yaml <yaml>","Inline YAML workflow definition").option("-v, --var <key=value>","Variable override (repeatable)",O,{}).option("-F, --format <format>","Output format (text|json)","text").option("-o, --output <path>","Write output to file").action(async(n,t)=>{try{let{BrowserWorkflowTool:e}=await import("./browser-workflow-WLZGR6SB.js"),{writeOutput:c,toJSON:l}=await import("./ci-output-BL6KWOHW.js"),s=new e,u={variables:t.var||{}};if(t.yaml)u.workflowYaml=t.yaml;else if(n)if(n.endsWith(".yaml")||n.endsWith(".yml")){let g=await import("fs"),d=(await import("path")).resolve(n);g.existsSync(d)||(console.log(o.red(`
 File not found: ${d}
 `)),await i(1)),u.workflowYaml=g.readFileSync(d,"utf-8")}else u.templateName=n;else console.log(o.red(`
 Provide a template name or --yaml. Use "workflow browser-list" to see templates.

package/dist/cli/chunks/workflow-orchestrator-SG7DV72E.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{a,b,d as c,e as d}from"./chunk-6RBTS3NF.js";import"./chunk-XHHWABJV.js";import"./chunk-T66PPF4D.js";import"./chunk-337Z52QM.js";import"./chunk-XWIAZG3C.js";import"./chunk-5G4UFTV4.js";import"./chunk-DEKR3CTS.js";import"./chunk-4X3SWKBA.js";import"./chunk-W62OOK7A.js";import"./chunk-GCHYOPRZ.js";import"./chunk-DKX4GNRU.js";import"./chunk-PXATBHWN.js";import"./chunk-5I7357KS.js";import"./chunk-QFGYH6HD.js";import"./chunk-LJMYRTJ7.js";import"./chunk-G242G224.js";import"./chunk-3HVFIITW.js";import"./chunk-BQ47GQPK.js";import"./chunk-ZWBGYJ7K.js";import"./chunk-UJABDXST.js";import"./chunk-6YVMX2TC.js";import"./chunk-SZAZQZWI.js";import"./chunk-MPFPWJTH.js";import"./chunk-FOOW4JVS.js";import"./chunk-HL2ANKN3.js";import"./chunk-BZULJMGH.js";import"./chunk-XH4JMX5O.js";export{b as DEFAULT_WORKFLOW_CONFIG,a as WorkflowEvents,c as WorkflowOrchestrator,d as createWorkflowOrchestrator};

package/dist/cli/chunks/{wrappers-5JIFWKN6.js → wrappers-5QFMCKXL.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.13");process.exit(0)}
-import{a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v as L,w as M,x as N}from"./chunk-HZ5NXFXH.js";import{a as v,b as w,c as x,d as y,e as z,f as A,g as B,h as C,i as D,j as E,k as F,l as G,m as H,n as I,o as J,p as K}from"./chunk-YQFLQE53.js";import"./chunk-3Y7TJFHU.js";import"./chunk-7CMTY45A.js";import"./chunk-VTOBUZL6.js";import"./chunk-KDNJ4F3P.js";import"./chunk-JRRXCODW.js";import"./chunk-XNBOGCF3.js";import"./chunk-KV4T4MXK.js";import"./chunk-TWDW32W2.js";import"./chunk-AQSVJNEH.js";import"./chunk-OCAEXYFA.js";import"./chunk-DVGRPK7A.js";import"./chunk-TOQWL2ZF.js";import"./chunk-UT2VZ33P.js";import"./chunk-GB6HBNH2.js";import"./chunk-UOC3O6RP.js";import"./chunk-NT4DBXSX.js";import"./chunk-WOCGL4QP.js";import"./chunk-J2ZIFFM6.js";import"./chunk-RF7HWBHN.js";import"./chunk-DNDL7SOS.js";import"./chunk-3Y2ROSCL.js";import"./chunk-WO274FRI.js";import"./chunk-ZAKQLAHT.js";export{z as GNNLayerFactory,i as QEFlashAttention,x as QEGNNEmbeddingIndex,y as QEGNNIndexFactory,a as QESONA,e as QE_FLASH_ATTENTION_CONFIG,g as QE_PERFORMANCE_TARGETS,f as QE_SONA_CONFIG,A as TensorCompressionFactory,u as batchComputeAttention,K as batchDifferentiableSearch,M as checkRuvectorPackagesAvailable,c as createDomainQESONA,j as createQEFlashAttention,b as createQESONA,D as getDifferentiableSearch,F as getGetCompressionLevel,E as getHierarchicalForward,G as getInit,h as getOptimalBlockConfig,k as getQEFlashAttentionConfig,n as getRuvectorDotProductAttention,m as getRuvectorFlashAttention,p as getRuvectorHyperbolicAttention,B as getRuvectorLayer,q as getRuvectorLinearAttention,r as getRuvectorMoEAttention,o as getRuvectorMultiHeadAttention,L as getRuvectorPackageVersions,C as getTensorCompress,l as getWorkloadTypes,N as initAllRuvectorPackages,w as initGNN,d as isAttentionAvailable,v as isGNNAvailable,s as toFloat32Array,H as toFloat32ArrayGNN,J as toIEmbedding,t as toNumberArrayAttn,I as toNumberArrayGNN};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.15");process.exit(0)}
+import{a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v as L,w as M,x as N}from"./chunk-BLL2XU7A.js";import{a as v,b as w,c as x,d as y,e as z,f as A,g as B,h as C,i as D,j as E,k as F,l as G,m as H,n as I,o as J,p as K}from"./chunk-UAQZI6N4.js";import"./chunk-T66PPF4D.js";import"./chunk-337Z52QM.js";import"./chunk-XWIAZG3C.js";import"./chunk-5G4UFTV4.js";import"./chunk-DEKR3CTS.js";import"./chunk-4X3SWKBA.js";import"./chunk-W62OOK7A.js";import"./chunk-GCHYOPRZ.js";import"./chunk-DKX4GNRU.js";import"./chunk-PXATBHWN.js";import"./chunk-5I7357KS.js";import"./chunk-G242G224.js";import"./chunk-3HVFIITW.js";import"./chunk-BQ47GQPK.js";import"./chunk-ZWBGYJ7K.js";import"./chunk-UJABDXST.js";import"./chunk-6YVMX2TC.js";import"./chunk-SZAZQZWI.js";import"./chunk-MPFPWJTH.js";import"./chunk-FOOW4JVS.js";import"./chunk-HL2ANKN3.js";import"./chunk-BZULJMGH.js";import"./chunk-XH4JMX5O.js";export{z as GNNLayerFactory,i as QEFlashAttention,x as QEGNNEmbeddingIndex,y as QEGNNIndexFactory,a as QESONA,e as QE_FLASH_ATTENTION_CONFIG,g as QE_PERFORMANCE_TARGETS,f as QE_SONA_CONFIG,A as TensorCompressionFactory,u as batchComputeAttention,K as batchDifferentiableSearch,M as checkRuvectorPackagesAvailable,c as createDomainQESONA,j as createQEFlashAttention,b as createQESONA,D as getDifferentiableSearch,F as getGetCompressionLevel,E as getHierarchicalForward,G as getInit,h as getOptimalBlockConfig,k as getQEFlashAttentionConfig,n as getRuvectorDotProductAttention,m as getRuvectorFlashAttention,p as getRuvectorHyperbolicAttention,B as getRuvectorLayer,q as getRuvectorLinearAttention,r as getRuvectorMoEAttention,o as getRuvectorMultiHeadAttention,L as getRuvectorPackageVersions,C as getTensorCompress,l as getWorkloadTypes,N as initAllRuvectorPackages,w as initGNN,d as isAttentionAvailable,v as isGNNAvailable,s as toFloat32Array,H as toFloat32ArrayGNN,J as toIEmbedding,t as toNumberArrayAttn,I as toNumberArrayGNN};

package/dist/cli/commands/coverage.js

@@ -9,6 +9,7 @@ import { runCoverageAnalysisWizard } from '../wizards/coverage-wizard.js';
 import { writeOutput, toJSON, coverageToMarkdown } from '../utils/ci-output.js';
 import * as path from 'path';
 import { EXIT_UNMEASURED, coverageExitCode, coverageJson, evaluateCliCoverage, } from '../utils/coverage-verdict.js';
+import { describeExcludedEntries } from '../../coordination/handlers/coverage-evidence.js';
 // #1012 / #1010: resolution and verdict are shared with `aqe ci` (and built on
 // the same functions as MCP); re-exported here for existing importers.
 export { EXIT_UNMEASURED, resolveCliCoverageData } from '../utils/coverage-verdict.js';
@@ -132,6 +133,11 @@ missing coverage evidence.`)
                     if (coverageData.unmeasuredFiles?.length) {
                         console.log(chalk.yellow(`  ${coverageData.unmeasuredFiles.length} file(s) not in the coverage report — UNMEASURED, excluded from the figures\n`));
                     }
+                    // #1219: report entries that are not project files are named, not counted.
+                    if (outcome.kind === 'measured') {
+                        for (const note of describeExcludedEntries(outcome.evidence))
+                            console.log(chalk.yellow(`  ${note}\n`));
+                    }
                 }
                 else {
                     console.log(chalk.yellow('  No coverage report found — showing a heuristic STATIC ESTIMATE (UNMEASURED)'));

package/dist/cli/commands/learning-prune.d.ts

@@ -0,0 +1,14 @@
+/**
+ * `aqe learning prune` (#1239)
+ *
+ * Bounds the learning tables on demand. A dry run by default: it prints the
+ * row counts each step would change and writes nothing. `--apply` makes the
+ * changes, after a verified backup of memory.db unless `--no-backup`.
+ *
+ * The two default steps (failed dream cycles, outcome concepts) also run
+ * after every committed dream. The other two drop data that may still be of
+ * use, so they run only when asked for here.
+ */
+import { Command } from 'commander';
+export declare function registerPruneCommand(learning: Command): void;
+//# sourceMappingURL=learning-prune.d.ts.map

package/dist/cli/commands/learning-prune.js

@@ -0,0 +1,105 @@
+/**
+ * `aqe learning prune` (#1239)
+ *
+ * Bounds the learning tables on demand. A dry run by default: it prints the
+ * row counts each step would change and writes nothing. `--apply` makes the
+ * changes, after a verified backup of memory.db unless `--no-backup`.
+ *
+ * The two default steps (failed dream cycles, outcome concepts) also run
+ * after every committed dream. The other two drop data that may still be of
+ * use, so they run only when asked for here.
+ */
+import path from 'node:path';
+import { randomUUID } from 'node:crypto';
+import { existsSync } from 'node:fs';
+import chalk from 'chalk';
+import { openDatabase } from '../../shared/safe-db.js';
+import { backupLearningDatabase } from './learning-snapshot.js';
+import { getDbPath, printError, printJson } from './learning-helpers.js';
+import { DEFAULT_FAILED_DREAM_CYCLE_RETENTION_DAYS, DEFAULT_OUTCOME_CONCEPT_CAP, MIN_OUTCOME_CONCEPT_CAP, capOutcomeConcepts, compactConsolidatedExperiences, describeRetention, pruneFailedDreamCycles, pruneRoutingOutcomes, } from '../../learning/learning-retention.js';
+function wholeNumber(flag, raw, min) {
+    if (!/^\d+$/.test(raw) || Number(raw) < min) {
+        throw new Error(`${flag} must be a whole number >= ${min}, got "${raw}"`);
+    }
+    return Number(raw);
+}
+export function registerPruneCommand(learning) {
+    learning
+        .command('prune')
+        .description('Bound learning-table growth (dry run unless --apply)')
+        .option('--dry-run', 'Print the row counts that would change; write nothing (default)')
+        .option('--apply', 'Make the changes (backs up memory.db first)')
+        .option('--no-backup', 'With --apply: skip the backup')
+        .option('--failed-dream-cycles-days <n>', 'Remove failed/interrupted dream cycles older than n days', String(DEFAULT_FAILED_DREAM_CYCLE_RETENTION_DAYS))
+        .option('--outcome-concepts-max <n>', 'Keep the newest n outcome concept nodes', String(DEFAULT_OUTCOME_CONCEPT_CAP))
+        .option('--compact-experiences', 'Opt-in: clear result_json and embedding of archived/merged experiences')
+        .option('--routing-outcomes-older-than <days>', 'Opt-in: remove routing outcomes older than this')
+        .option('--json', 'Output as JSON')
+        .addHelpText('after', `
+Examples:
+  aqe learning prune                                   # dry run of the default steps
+  aqe learning prune --compact-experiences             # dry run, including compaction
+  aqe learning prune --compact-experiences --apply     # back up, then compact
+
+Rows deleted inside the file are reused by SQLite; run VACUUM to shrink the file itself.`)
+        .action(async (options) => {
+        try {
+            if (options.apply && options.dryRun)
+                throw new Error('--apply and --dry-run cannot be combined');
+            const dryRun = !options.apply;
+            const failedDays = wholeNumber('--failed-dream-cycles-days', options.failedDreamCyclesDays, 1);
+            const outcomeMax = wholeNumber('--outcome-concepts-max', options.outcomeConceptsMax, MIN_OUTCOME_CONCEPT_CAP);
+            const routingDays = options.routingOutcomesOlderThan === undefined
+                ? undefined
+                : wholeNumber('--routing-outcomes-older-than', options.routingOutcomesOlderThan, 1);
+            const dbPath = getDbPath();
+            if (!existsSync(dbPath))
+                throw new Error(`No learning database found at: ${dbPath}`);
+            let backupPath;
+            if (!dryRun && options.backup) {
+                const stamp = new Date().toISOString().replace(/[:.]/g, '-').slice(0, 23);
+                const output = path.join(path.dirname(dbPath), 'backups', `pre-prune-${stamp}-${randomUUID()}.db`);
+                backupPath = (await backupLearningDatabase(dbPath, output, { verify: true })).backupPath;
+            }
+            const db = openDatabase(dbPath, { readonly: dryRun, fileMustExist: true });
+            const results = [];
+            try {
+                results.push(pruneFailedDreamCycles(db, { retentionDays: failedDays, dryRun }));
+                results.push(capOutcomeConcepts(db, { maxNodes: outcomeMax, dryRun }));
+                if (options.compactExperiences)
+                    results.push(compactConsolidatedExperiences(db, { dryRun }));
+                if (routingDays !== undefined) {
+                    results.push(pruneRoutingOutcomes(db, { olderThanDays: routingDays, dryRun }));
+                }
+            }
+            finally {
+                db.close();
+            }
+            if (options.json) {
+                printJson({ dryRun, dbPath, backupPath, steps: results });
+                return;
+            }
+            console.log(chalk.bold(`\nLearning prune${dryRun ? ' (dry run, nothing written)' : ''}\n`));
+            console.log(`  Database: ${dbPath}`);
+            if (backupPath)
+                console.log(`  Backup:   ${backupPath}`);
+            for (const step of results) {
+                const extra = step.payloadBytes !== undefined
+                    ? `, ${(step.payloadBytes / (1024 * 1024)).toFixed(1)} MB of payload`
+                    : '';
+                console.log(`  ${describeRetention(step)}${extra}`);
+            }
+            if (dryRun)
+                console.log(chalk.gray('\n  Re-run with --apply to make these changes.'));
+            if (!options.compactExperiences || routingDays === undefined) {
+                console.log(chalk.gray('  Opt-in steps: --compact-experiences, --routing-outcomes-older-than <days>.'));
+            }
+            console.log('');
+        }
+        catch (error) {
+            printError(`prune failed: ${error instanceof Error ? error.message : String(error)}`);
+            process.exitCode = 1;
+        }
+    });
+}
+//# sourceMappingURL=learning-prune.js.map

package/dist/cli/commands/learning.js

@@ -22,6 +22,8 @@ import { createLearningMetricsTracker, } from '../../learning/metrics-tracker.js
 import { createRegretTracker, } from '../../learning/regret-tracker.js';
 import { openDatabase } from '../../shared/safe-db.js';
 import { backupLearningDatabase, restoreLearningDatabase } from './learning-snapshot.js';
+import { registerPruneCommand } from './learning-prune.js';
+import { describeDreamRetention } from '../../learning/learning-retention.js';
 import { createSQLitePatternStore } from '../../learning/sqlite-persistence.js';
 import { getActiveEmbeddingSpaceIdentity } from '../../learning/real-embeddings.js';
 import { inspectEmbeddingSpaceRows } from '../../learning/embedding-space.js';
@@ -75,6 +77,7 @@ Examples:
     registerRepairCommand(learning);
     registerHealthCommand(learning);
     registerLoopHealthCommand(learning);
+    registerPruneCommand(learning);
     return learning;
 }
 // ============================================================================
@@ -1244,6 +1247,9 @@ function registerDreamCommand(learning) {
                     conceptsProcessed: result.cycle.conceptsProcessed, associationsFound: result.cycle.associationsFound,
                     insightsGenerated: result.cycle.insightsGenerated, activationStats: result.activationStats,
                     patternsCreated: result.patternsCreated,
+                    retention: result.retention
+                        ? { enabled: result.retention.enabled, steps: describeDreamRetention(result.retention) }
+                        : undefined,
                     insights: result.insights.map(i => ({ id: i.id, type: i.type, description: i.description, noveltyScore: i.noveltyScore, confidenceScore: i.confidenceScore, actionable: i.actionable })),
                 });
             }
@@ -1255,6 +1261,9 @@ function registerDreamCommand(learning) {
                 console.log(`  Concepts:       ${result.cycle.conceptsProcessed}`);
                 console.log(`  Associations:   ${result.cycle.associationsFound}`);
                 console.log(`  Insights:       ${result.cycle.insightsGenerated}`);
+                for (const line of result.retention ? describeDreamRetention(result.retention) : []) {
+                    console.log(`  Retention:      ${line}`);
+                }
                 if (result.activationStats) {
                     console.log(chalk.bold('\n  Activation Stats:'));
                     console.log(`    Iterations:   ${result.activationStats.totalIterations}`);

package/dist/cli/handlers/brain-handler.js

@@ -107,13 +107,24 @@ export class BrainHandler {
                 console.log(`  RVF Size: ${chalk.cyan(formatBytes(rvf.fileSizeBytes))}`);
                 console.log(`  Segments: ${chalk.cyan(rvf.totalSegments)}`);
             }
+            const skippedVectors = manifest.stats
+                .skippedCacheRows?.vectors;
+            if (skippedVectors) {
+                console.log(`  Skipped:  ${chalk.gray(`${skippedVectors} code-index vectors (regenerable: aqe code index <path>)`)}`);
+            }
             console.log(`  Checksum: ${chalk.gray(manifest.checksum)}`);
             console.log(`  Output:   ${chalk.cyan(path.resolve(options.output))}`);
             console.log('');
             await this.cleanupAndExit(0);
         }
         catch (error) {
-            console.error(chalk.red('\n  Brain export failed:'), error);
+            if (error?.code === 'RVF_KERNEL_TOO_LARGE') {
+                // Expected condition, not a crash: the message names the size and the fix.
+                console.error(chalk.red('\n  Brain export failed:'), error.message);
+            }
+            else {
+                console.error(chalk.red('\n  Brain export failed:'), error);
+            }
             await this.cleanupAndExit(1);
         }
     }

package/dist/cli/utils/coverage-verdict.js

@@ -23,7 +23,7 @@ import chalk from 'chalk';
 import { walkSourceFiles } from './file-discovery.js';
 import { buildCoverageData, summarizeCoverage } from './coverage-data.js';
 import { describeNoData, reconcileRecommendations, resolveExistingCoverage, thresholdVerdict, } from '../../coordination/handlers/coverage-target.js';
-import { describeEvidence } from '../../coordination/handlers/coverage-evidence.js';
+import { describeEvidence, describeExcludedEntries } from '../../coordination/handlers/coverage-evidence.js';
 /** `aqe coverage` exit code when no coverage measurement exists for the target (#995). */
 export const EXIT_UNMEASURED = 3;
 /** Provenance labels, the same vocabulary as MCP `coverage_analyze_sublinear`. */
@@ -157,6 +157,15 @@ export function coverageExitCode(outcome, threshold) {
             return 1;
     }
 }
+/** The JSON `warning`: the evidence gaps, then the report entries left out (#1219). */
+function coverageWarning(insufficient, excludedNotes) {
+    if (insufficient.length === 0 && excludedNotes.length === 0)
+        return {};
+    const gaps = insufficient.length > 0 ? `INSUFFICIENT EVIDENCE: ${insufficient.join('; ')}` : '';
+    if (excludedNotes.length === 0)
+        return { warning: gaps };
+    return { warning: [gaps && gaps.replace(/\.?$/, '.'), ...excludedNotes].filter(Boolean).join(' ') };
+}
 /** The `-F json` document for an outcome (same shape in every case). */
 export function coverageJson(outcome, threshold, target) {
     const nulls = { line: null, branch: null, function: null, statement: null };
@@ -176,8 +185,10 @@ export function coverageJson(outcome, threshold, target) {
                 ...(outcome.data.unmeasuredFiles?.length ? { unmeasuredFiles: outcome.data.unmeasuredFiles } : {}),
                 ...(outcome.evidence ? { evidenceStatus: outcome.evidence.status } : {}),
                 ...(outcome.evidence?.stale ? { staleReport: outcome.evidence.stale } : {}),
-                ...(outcome.insufficientEvidence.length > 0
-                    ? { warning: `INSUFFICIENT EVIDENCE: ${outcome.insufficientEvidence.join('; ')}` } : {}),
+                // #1219: report entries that are not project files, left out of the figures.
+                ...(outcome.evidence?.conflictingFiles ? { conflictingFiles: outcome.evidence.conflictingFiles } : {}),
+                ...(outcome.evidence?.excludedEntries ? { excludedReportEntries: outcome.evidence.excludedEntries } : {}),
+                ...coverageWarning(outcome.insufficientEvidence, describeExcludedEntries(outcome.evidence)),
             };
         case 'estimate':
             return {

package/dist/context/compaction/index.d.ts

@@ -79,6 +79,13 @@ export declare class CompactionPipeline {
      * Triggers Tier 4 reactive compaction immediately.
      */
     handleOverflow(trigger?: 'status_413' | 'context_overflow'): Promise<Tier4Result>;
+    /** Get the active conversation history (a copy) as the next tier would see it. */
+    getConversationHistory(): ConversationMessage[];
+    /**
+     * Set the budget to the token estimate of the retained history (#1249), so
+     * it describes what is actually kept rather than a tier's reported saving.
+     */
+    private reconcileBudget;
     /** Get compaction statistics for the session_cache_stats tool. */
     getStats(): {
         conversationMessages: number;

package/dist/context/compaction/index.js

@@ -120,10 +120,22 @@ export class CompactionPipeline {
                 tierResults.push(t2);
                 tiersExecuted.push(2);
                 totalTokensSaved += t2.tokensSaved;
-                // Replace conversation history with preserved messages
+                // #1249: keep the Tier-2 summary in history ahead of the preserved
+                // tail. It used to be dropped, so the summarized messages had no
+                // representation left and Tier 3 saw only the tail.
                 if (t2.removedMessageCount > 0) {
-                    this.conversationHistory = [...t2.preservedMessages];
-                    this.budget.releaseTokens(t2.tokensSaved);
+                    const summaryMessage = t2.summary
+                        ? [{
+                                role: 'assistant',
+                                content: t2.summary,
+                                timestamp: Date.now(),
+                                estimatedTokens: t2.summaryTokens,
+                                id: t2.summaryItem?.id,
+                                provenance: t2.summaryItem,
+                            }]
+                        : [];
+                    this.conversationHistory = [...summaryMessage, ...t2.preservedMessages];
+                    this.reconcileBudget();
                 }
             }
             if (maxTier >= 3 && this.budget.shouldAutoCompact()) {
@@ -142,7 +154,7 @@ export class CompactionPipeline {
                             id: t3.summaryItem?.id,
                             provenance: t3.summaryItem,
                         }];
-                    this.budget.releaseTokens(t3.tokensSaved);
+                    this.reconcileBudget();
                 }
             }
             if (maxTier >= 4 && this.budget.isBlocking()) {
@@ -153,7 +165,7 @@ export class CompactionPipeline {
                 totalTokensSaved += t4.tokensSaved;
                 if (t4.droppedCount > 0) {
                     this.conversationHistory = [...t4.survivingMessages];
-                    this.budget.releaseTokens(t4.tokensSaved);
+                    this.reconcileBudget();
                 }
             }
         }
@@ -175,10 +187,22 @@ export class CompactionPipeline {
         const result = this.tier4.compact(this.conversationHistory, trigger);
         if (result.droppedCount > 0) {
             this.conversationHistory = [...result.survivingMessages];
-            this.budget.releaseTokens(result.tokensSaved);
+            this.reconcileBudget();
         }
         return result;
     }
+    /** Get the active conversation history (a copy) as the next tier would see it. */
+    getConversationHistory() {
+        return [...this.conversationHistory];
+    }
+    /**
+     * Set the budget to the token estimate of the retained history (#1249), so
+     * it describes what is actually kept rather than a tier's reported saving.
+     */
+    reconcileBudget() {
+        const retained = this.conversationHistory.reduce((sum, m) => sum + (m.estimatedTokens ?? estimateTokensPadded(m.content)), 0);
+        this.budget.setUsedTokens(retained);
+    }
     /** Get compaction statistics for the session_cache_stats tool. */
     getStats() {
         return {