agentic-qe 3.15.12 → 3.15.14

package/dist/cli/chunks/{orchestrator-OEAFLAEV.js → orchestrator-Z6PWPLRE.js}

@@ -1,28 +1,28 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.12");process.exit(0)}
-import{a as Qe}from"./chunk-WLRU6ESI.js";import{a as ue,b as ve,c as Fe,d as Ne,e as We,f as Ve,g as Ge,h as He,i as Ue,j as Ke,k as ze,l as Je,m as Ye,n as be,o as Ze,p as et}from"./chunk-BOSMELJX.js";import{a as W,b as me,c as Le,e as Be,f as V}from"./chunk-35NW676P.js";import{a as Xe}from"./chunk-TXEUVUMO.js";import"./chunk-5TAEW5OV.js";import{c as Me}from"./chunk-RYHG3I7J.js";import"./chunk-P7UFJ6DO.js";import"./chunk-ZGROHCOW.js";import"./chunk-SG2TX72G.js";import"./chunk-GKFV6CUD.js";import"./chunk-L7NGKANW.js";import"./chunk-66PXR3NI.js";import{b as x,d as de}from"./chunk-WTAUF6O4.js";import"./chunk-SPC4RBLF.js";import"./chunk-WGTEZT7G.js";import"./chunk-IPA7K556.js";import"./chunk-ZROAMFX2.js";import"./chunk-YUA6ZKKY.js";import"./chunk-3IU4LDZR.js";import"./chunk-YVJEUX3I.js";import"./chunk-6QRI3JVE.js";import"./chunk-VZBC6DP7.js";import"./chunk-YWWMNTBF.js";import"./chunk-UJNGGFGX.js";import"./chunk-ADUAJIAU.js";import"./chunk-7OEFBWAG.js";import"./chunk-QCPVUNN3.js";import"./chunk-35MIUSXQ.js";import"./chunk-DZGPUGUG.js";import"./chunk-4LWMAAWK.js";import{a as Te,b as Oe,c as Rt,d as D,e as ye}from"./chunk-IA55PFLG.js";import{a as P,b as je,e as Q}from"./chunk-W4II6SIH.js";import"./chunk-O3IM4WRZ.js";import{a as It}from"./chunk-WDEXOLK2.js";Q();Q();var v=class{requiresPhases;requiresEnhancements;async shouldRun(e){return!0}async execute(e){let t=Date.now();try{return{success:!0,data:await this.run(e),durationMs:Date.now()-t,message:`${this.description} completed`}}catch(s){return{success:!1,error:je(s),durationMs:Date.now()-t,message:`${this.description} failed: ${P(s)}`}}}checkDependencies(e){if(!this.requiresPhases?.length)return!0;for(let t of this.requiresPhases)if(!e.results.get(t)?.success)return e.services.warn(`Phase ${this.name} requires ${t} which has not completed`),!1;return!0}checkEnhancements(e){if(!this.requiresEnhancements?.length)return!0;for(let t of this.requiresEnhancements)if(!(t==="claudeFlow"?e.enhancements.claudeFlow:t==="ruvector"?e.enhancements.ruvector:!1))return e.services.warn(`Phase ${this.name} requires ${t} which is not available`),!1;return!0}};de();ye();import{existsSync as T}from"fs";import{join as O}from"path";var G=class extends v{name="detection";description="Detect existing installations";order=10;critical=!0;async run(e){let{projectRoot:t}=e,s=await this.detectV2Installation(t),n=T(O(t,".agentic-qe","config.yaml")),o=s.version?.startsWith("3."),r=s.detected,i=n||o||!1,d=!r&&!i;return e.v2Detection=s,{v2Detected:r,v3Detected:i,freshInstall:d,v2Detection:s}}async detectV2Installation(e){let t=O(e,".agentic-qe","memory.db"),s=O(e,".agentic-qe","config"),n=O(e,".claude","agents"),o=O(e,".agentic-qe","config","learning.json"),r=T(t),i=T(s),d=T(n),m=T(o),l=T(O(e,".agentic-qe","config.yaml")),u,p=!1;return r&&(u=this.readVersionFromDb(t),u?p=u.startsWith("3."):u="2.x.x"),{detected:!p&&r&&(!u?.startsWith("3.")||m&&!l),memoryDbPath:r?t:void 0,configPath:i?s:void 0,agentsPath:d?n:void 0,hasMemoryDb:r,hasConfig:i,hasAgents:d,version:u}}readVersionFromDb(e){try{let t=D(e,{readonly:!0,fileMustExist:!0});try{if(!t.prepare(`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.14");process.exit(0)}
+import{a as Qe}from"./chunk-TSP6SU5V.js";import{a as ue,b as ke,c as Fe,d as Ne,e as Ve,f as We,g as He,h as Ge,i as Ue,j as Ke,k as ze,l as Je,m as Ye,n as ve,o as Ze,p as et}from"./chunk-VJBJRFUO.js";import{a as V,b as pe,c as Le,e as Be,f as W}from"./chunk-ZUE524JL.js";import{a as Xe}from"./chunk-FTYRPEJS.js";import"./chunk-6P4Q4RTC.js";import{c as Me}from"./chunk-IQRPR4KB.js";import"./chunk-J35JWDJE.js";import"./chunk-JJHLGGPP.js";import"./chunk-HTVGHHX2.js";import"./chunk-QUZ745UQ.js";import"./chunk-JK6PMLQQ.js";import"./chunk-6NIGSY5L.js";import{b as x,d as de}from"./chunk-XN3KCKAM.js";import"./chunk-UDSB3XCG.js";import"./chunk-Z54G2YOL.js";import"./chunk-HEDGFKC5.js";import"./chunk-AJVLVF7V.js";import"./chunk-7SQTLUEN.js";import"./chunk-57DRT6UA.js";import"./chunk-K7GFYFBO.js";import"./chunk-BNG4J3CE.js";import"./chunk-RE6JTSDM.js";import"./chunk-LTGQJYYO.js";import"./chunk-YKQWIXUY.js";import"./chunk-C3OIBFAA.js";import"./chunk-IRPNEXOU.js";import"./chunk-7QUSNBAA.js";import"./chunk-E7OR6V3V.js";import"./chunk-2UZBLC5H.js";import"./chunk-CAZM63TP.js";import{a as Oe,b as je,c as It,d as D,e as ye}from"./chunk-INGXD5IX.js";import{a as S,b as qe,e as Q}from"./chunk-L5VSLPMW.js";import"./chunk-U6IOQKCT.js";import{a as Rt}from"./chunk-V6SE2ZU2.js";Q();Q();var k=class{requiresPhases;requiresEnhancements;async shouldRun(e){return!0}async execute(e){let t=Date.now();try{return{success:!0,data:await this.run(e),durationMs:Date.now()-t,message:`${this.description} completed`}}catch(s){return{success:!1,error:qe(s),durationMs:Date.now()-t,message:`${this.description} failed: ${S(s)}`}}}checkDependencies(e){if(!this.requiresPhases?.length)return!0;for(let t of this.requiresPhases)if(!e.results.get(t)?.success)return e.services.warn(`Phase ${this.name} requires ${t} which has not completed`),!1;return!0}checkEnhancements(e){if(!this.requiresEnhancements?.length)return!0;for(let t of this.requiresEnhancements)if(!(t==="claudeFlow"?e.enhancements.claudeFlow:t==="ruvector"?e.enhancements.ruvector:!1))return e.services.warn(`Phase ${this.name} requires ${t} which is not available`),!1;return!0}};de();ye();import{existsSync as O}from"fs";import{join as j}from"path";var H=class extends k{name="detection";description="Detect existing installations";order=10;critical=!0;async run(e){let{projectRoot:t}=e,s=await this.detectV2Installation(t),n=O(j(t,".agentic-qe","config.yaml")),o=s.version?.startsWith("3."),r=s.detected,i=n||o||!1,d=!r&&!i;return e.v2Detection=s,{v2Detected:r,v3Detected:i,freshInstall:d,v2Detection:s}}async detectV2Installation(e){let t=j(e,".agentic-qe","memory.db"),s=j(e,".agentic-qe","config"),n=j(e,".claude","agents"),o=j(e,".agentic-qe","config","learning.json"),r=O(t),i=O(s),d=O(n),p=O(o),l=O(j(e,".agentic-qe","config.yaml")),u,m=!1;return r&&(u=this.readVersionFromDb(t),u?m=u.startsWith("3."):u="2.x.x"),{detected:!m&&r&&(!u?.startsWith("3.")||p&&!l),memoryDbPath:r?t:void 0,configPath:i?s:void 0,agentsPath:d?n:void 0,hasMemoryDb:r,hasConfig:i,hasAgents:d,version:u}}readVersionFromDb(e){try{let t=D(e,{readonly:!0,fileMustExist:!0});try{if(!t.prepare(`
           SELECT name FROM sqlite_master
           WHERE type='table' AND name='kv_store'
         `).get()){t.close();return}let n=t.prepare(`
           SELECT value FROM kv_store
           WHERE key = 'aqe_version' AND namespace = '_system'
-        `).get();return t.close(),n?x(n.value):void 0}catch{t.close();return}}catch{return}}};var H=class extends v{name="analysis";description="Analyze project structure";order=20;critical=!0;requiresPhases=["detection"];async run(e){let s=await Fe(e.projectRoot).analyze();return e.analysis=s,e.services.log(`  Project: ${s.projectName}`),e.services.log(`  Languages: ${s.languages.map(n=>n.name).join(", ")}`),e.services.log(`  Frameworks: ${s.frameworks.map(n=>n.name).join(", ")}`),s}};var U=class extends v{name="configuration";description="Generate configuration";order=30;critical=!0;requiresPhases=["analysis"];async run(e){if(!e.analysis)throw new Error("Analysis phase must complete before configuration");let s=Ne({minimal:e.options.minimal}).recommend(e.analysis);return s=this.applyOptions(s,e),e.config=s,e.services.log(`  Version: ${s.version}`),e.services.log(`  Learning: ${s.learning.enabled?"enabled":"disabled"}`),e.services.log(`  Workers: ${s.workers.enabled.length}`),s}applyOptions(e,t){let{options:s}=t;return s.minimal&&(e.skills.install=!1,e.learning.pretrainedPatterns=!1,e.workers.enabled=[],e.workers.daemonAutoStart=!1),s.skipPatterns&&(e.learning.pretrainedPatterns=!1),s.wizardAnswers&&(e=this.applyWizardAnswers(e,s.wizardAnswers)),e}applyWizardAnswers(e,t){switch(t["project-type"]&&t["project-type"]!=="auto"&&(e.project.type=t["project-type"]),t["learning-mode"]){case"full":e.learning.enabled=!0,e.learning.embeddingModel="transformer";break;case"basic":e.learning.enabled=!0,e.learning.embeddingModel="hash";break;case"disabled":e.learning.enabled=!1;break}return t["load-patterns"]===!1&&(e.learning.pretrainedPatterns=!1),t.hooks===!1&&(e.hooks.claudeCode=!1),t.workers===!1&&(e.workers.daemonAutoStart=!1),t.skills===!1&&(e.skills.install=!1),e}};import{existsSync as K,mkdirSync as ke}from"fs";import{join as z}from"path";Q();Rt();var J=class extends v{name="database";description="Initialize persistence database";order=40;critical=!0;requiresPhases=["configuration"];async shouldRun(e){return e.options.memoryBackend!=="memory"}async run(e){let{projectRoot:t}=e,s=z(t,"vectors.db");K(s)&&e.services.log(`  \u26A0 Stale vectors.db detected at ${s}
+        `).get();return t.close(),n?x(n.value):void 0}catch{t.close();return}}catch{return}}};var G=class extends k{name="analysis";description="Analyze project structure";order=20;critical=!0;requiresPhases=["detection"];async run(e){let s=await Fe(e.projectRoot).analyze();return e.analysis=s,e.services.log(`  Project: ${s.projectName}`),e.services.log(`  Languages: ${s.languages.map(n=>n.name).join(", ")}`),e.services.log(`  Frameworks: ${s.frameworks.map(n=>n.name).join(", ")}`),s}};var U=class extends k{name="configuration";description="Generate configuration";order=30;critical=!0;requiresPhases=["analysis"];async run(e){if(!e.analysis)throw new Error("Analysis phase must complete before configuration");let s=Ne({minimal:e.options.minimal}).recommend(e.analysis);return s=this.applyOptions(s,e),e.config=s,e.services.log(`  Version: ${s.version}`),e.services.log(`  Learning: ${s.learning.enabled?"enabled":"disabled"}`),e.services.log(`  Workers: ${s.workers.enabled.length}`),s}applyOptions(e,t){let{options:s}=t;return s.minimal&&(e.skills.install=!1,e.learning.pretrainedPatterns=!1,e.workers.enabled=[],e.workers.daemonAutoStart=!1),s.skipPatterns&&(e.learning.pretrainedPatterns=!1),s.wizardAnswers&&(e=this.applyWizardAnswers(e,s.wizardAnswers)),e}applyWizardAnswers(e,t){switch(t["project-type"]&&t["project-type"]!=="auto"&&(e.project.type=t["project-type"]),t["learning-mode"]){case"full":e.learning.enabled=!0,e.learning.embeddingModel="transformer";break;case"basic":e.learning.enabled=!0,e.learning.embeddingModel="hash";break;case"disabled":e.learning.enabled=!1;break}return t["load-patterns"]===!1&&(e.learning.pretrainedPatterns=!1),t.hooks===!1&&(e.hooks.claudeCode=!1),t.workers===!1&&(e.workers.daemonAutoStart=!1),t.skills===!1&&(e.skills.install=!1),e}};import{existsSync as K,mkdirSync as be}from"fs";import{join as z}from"path";Q();It();var J=class extends k{name="database";description="Initialize persistence database";order=40;critical=!0;requiresPhases=["configuration"];async shouldRun(e){return e.options.memoryBackend!=="memory"}async run(e){let{projectRoot:t}=e,s=z(t,"vectors.db");K(s)&&e.services.log(`  \u26A0 Stale vectors.db detected at ${s}
     This file is left over from @ruvector/router (pre-v3.9.6).
     It is no longer read or written by AQE. Safe to delete:
-      rm "${s}"`);let n=z(t,".agentic-qe");K(n)||ke(n,{recursive:!0});let o=z(n,"workers");K(o)||ke(o,{recursive:!0});let r=z(n,"data");K(r)||ke(r,{recursive:!0});let i=z(n,"memory.db"),d=!K(i);try{let{initializeUnifiedMemory:m,resetUnifiedMemory:l}=await import("./unified-memory-FL26RTV3.js"),u=await m({dbPath:i,walMode:!0,busyTimeout:5e3}),y=u.getStats().tables.map(B=>B.name);await u.kvSet("_init_marker",{initialized:new Date().toISOString(),projectRoot:t,version:ue()},"_system");let E=u.getDatabase().prepare("SELECT version FROM schema_version WHERE id = 1").get()?.version??0;return l(),e.services.log(`  Database: ${i}`),e.services.log(`  Schema version: v${E}`),e.services.log(`  Tables: ${y.length} (v3 full schema)`),{dbPath:i,created:d,tablesCreated:y,schemaVersion:E}}catch(m){throw Oe(m)?new Error(`SQLite persistence initialization FAILED: ${P(Te(m))}`,{cause:m}):new Error(`SQLite persistence initialization FAILED: ${m}
+      rm "${s}"`);let n=z(t,".agentic-qe");K(n)||be(n,{recursive:!0});let o=z(n,"workers");K(o)||be(o,{recursive:!0});let r=z(n,"data");K(r)||be(r,{recursive:!0});let i=z(n,"memory.db"),d=!K(i);try{let{initializeUnifiedMemory:p,resetUnifiedMemory:l}=await import("./unified-memory-QARWQKJ2.js"),u=await p({dbPath:i,walMode:!0,busyTimeout:5e3}),y=u.getStats().tables.map(B=>B.name);await u.kvSet("_init_marker",{initialized:new Date().toISOString(),projectRoot:t,version:ue()},"_system");let E=u.getDatabase().prepare("SELECT version FROM schema_version WHERE id = 1").get()?.version??0;return l(),e.services.log(`  Database: ${i}`),e.services.log(`  Schema version: v${E}`),e.services.log(`  Tables: ${y.length} (v3 full schema)`),{dbPath:i,created:d,tablesCreated:y,schemaVersion:E}}catch(p){throw je(p)?new Error(`SQLite persistence initialization FAILED: ${S(Oe(p))}`,{cause:p}):new Error(`SQLite persistence initialization FAILED: ${p}
 Database path: ${i}
-Ensure the directory is writable and has sufficient disk space.`)}}};import{existsSync as pe,mkdirSync as we,writeFileSync as At}from"fs";import{join as $}from"path";var Y=class extends v{name="learning";description="Initialize learning system";order=50;critical=!1;requiresPhases=["database","configuration"];async shouldRun(e){return e.options.memoryBackend==="memory"?!1:e.config?.learning?.enabled??!0}async run(e){let t=e.config,{projectRoot:s,options:n}=e;if(!t.learning.enabled)return{enabled:!1,dataDir:"",hnswDir:"",patternsLoaded:0};let o=$(s,".agentic-qe","data");pe(o)||we(o,{recursive:!0});let r=$(o,"hnsw");pe(r)||we(r,{recursive:!0});let i=$(o,"learning-config.json"),d={embeddingModel:t.learning.embeddingModel,hnswConfig:t.learning.hnswConfig,qualityThreshold:t.learning.qualityThreshold,promotionThreshold:t.learning.promotionThreshold,databasePath:$(o,"memory.db"),hnswIndexPath:$(r,"index.bin"),initialized:new Date().toISOString()};V(i,d,[["initialized"]]);let m=0;return t.learning.pretrainedPatterns&&!n.skipPatterns&&(m=await this.loadPretrainedPatterns(o,e)),e.services.log(`  Data dir: ${o}`),e.services.log(`  HNSW dir: ${r}`),e.services.log(`  Patterns loaded: ${m}`),{enabled:!0,dataDir:o,hnswDir:r,patternsLoaded:m}}async loadPretrainedPatterns(e,t){try{let s=$(e,"patterns");pe(s)||we(s,{recursive:!0});let n=$(s,"index.json");return pe(n)||At(n,JSON.stringify({version:ue(),domains:[],loadedAt:new Date().toISOString()},null,2),"utf-8"),0}catch(s){return t.services.warn(`Could not load pre-trained patterns: ${s}`),0}}};de();ye();import{existsSync as _t,statSync as xt}from"fs";import{join as ge}from"path";var tt=3e4,nt=18e4,st=["**/node_modules/**","**/dist/**","**/build/**","**/out/**","**/coverage/**","**/.agentic-qe/**","**/.git/**","**/.next/**","**/.nuxt/**","**/.output/**","**/__pycache__/**","**/.pytest_cache/**","**/target/**","**/vendor/**","**/.venv/**","**/venv/**","**/.tox/**","**/*.min.js","**/*.min.css","**/*.bundle.js","**/*.map","**/package-lock.json","**/yarn.lock","**/pnpm-lock.yaml","**/Pipfile.lock","**/poetry.lock","**/.env","**/.env.*"],X=class extends v{name="code-intelligence";description="Code intelligence pre-scan";order=60;critical=!1;requiresPhases=["database"];async shouldRun(e){if(e.options.memoryBackend==="memory")return e.services.log("  Code intelligence skipped (database-free mode)"),!1;let t=process.env.AQE_SKIP_CODE_INDEX;return t==="1"||t==="true"?(e.services.log("  Code intelligence skipped (AQE_SKIP_CODE_INDEX=1)"),e.services.log("  Run `aqe code index` later to build the KG on demand."),!1):e.options.skipCodeIndex?(e.services.log("  Code intelligence skipped (--skip-code-index)"),e.services.log("  Run `aqe code index` later to build the KG on demand."),!1):!0}async run(e){let{projectRoot:t}=e,s=ge(t,".agentic-qe","memory.db");if(!_t(s))return e.services.log("  Building knowledge graph..."),await this.runCodeIntelligenceScan(t,e,!1);let n=D(s);try{if(!this.checkCodeIntelligenceIndex(n))return n.close(),e.services.log("  Building knowledge graph..."),await this.runCodeIntelligenceScan(t,e,!1);let r=this.getLastIndexedAt(n);if(!r){let m=this.getKGEntryCount(n);return n.close(),e.services.log(`  Using existing index (${m} entries)`),{status:"existing",entries:m}}let i=this.getKGEntryCount(n);n.close();let d=await this.findChangedFiles(t,r);return d.length===0?(e.services.log(`  Index up to date (${i} entries)`),{status:"existing",entries:i}):(e.services.log(`  Delta scan: ${d.length} files changed since last index...`),await this.runCodeIntelligenceScan(t,e,!0,d))}catch(o){try{n.close()}catch{}throw o}}checkCodeIntelligenceIndex(e){try{return e.prepare(`
+Ensure the directory is writable and has sufficient disk space.`)}}};import{existsSync as me,mkdirSync as we,writeFileSync as At}from"fs";import{join as T}from"path";var Y=class extends k{name="learning";description="Initialize learning system";order=50;critical=!1;requiresPhases=["database","configuration"];async shouldRun(e){return e.options.memoryBackend==="memory"?!1:e.config?.learning?.enabled??!0}async run(e){let t=e.config,{projectRoot:s,options:n}=e;if(!t.learning.enabled)return{enabled:!1,dataDir:"",hnswDir:"",patternsLoaded:0};let o=T(s,".agentic-qe","data");me(o)||we(o,{recursive:!0});let r=T(o,"hnsw");me(r)||we(r,{recursive:!0});let i=T(o,"learning-config.json"),d={embeddingModel:t.learning.embeddingModel,hnswConfig:t.learning.hnswConfig,qualityThreshold:t.learning.qualityThreshold,promotionThreshold:t.learning.promotionThreshold,databasePath:T(o,"memory.db"),hnswIndexPath:T(r,"index.bin"),initialized:new Date().toISOString()};W(i,d,[["initialized"]]);let p=0;return t.learning.pretrainedPatterns&&!n.skipPatterns&&(p=await this.loadPretrainedPatterns(o,e)),e.services.log(`  Data dir: ${o}`),e.services.log(`  HNSW dir: ${r}`),e.services.log(`  Patterns loaded: ${p}`),{enabled:!0,dataDir:o,hnswDir:r,patternsLoaded:p}}async loadPretrainedPatterns(e,t){try{let s=T(e,"patterns");me(s)||we(s,{recursive:!0});let n=T(s,"index.json");return me(n)||At(n,JSON.stringify({version:ue(),domains:[],loadedAt:new Date().toISOString()},null,2),"utf-8"),0}catch(s){return t.services.warn(`Could not load pre-trained patterns: ${s}`),0}}};de();ye();import{existsSync as _t,statSync as xt}from"fs";import{join as fe}from"path";var tt=3e4,nt=18e4,st=["**/node_modules/**","**/dist/**","**/build/**","**/out/**","**/coverage/**","**/.agentic-qe/**","**/.git/**","**/.next/**","**/.nuxt/**","**/.output/**","**/__pycache__/**","**/.pytest_cache/**","**/target/**","**/vendor/**","**/.venv/**","**/venv/**","**/.tox/**","**/*.min.js","**/*.min.css","**/*.bundle.js","**/*.map","**/package-lock.json","**/yarn.lock","**/pnpm-lock.yaml","**/Pipfile.lock","**/poetry.lock","**/.env","**/.env.*"],X=class extends k{name="code-intelligence";description="Code intelligence pre-scan";order=60;critical=!1;requiresPhases=["database"];async shouldRun(e){if(e.options.memoryBackend==="memory")return e.services.log("  Code intelligence skipped (database-free mode)"),!1;let t=process.env.AQE_SKIP_CODE_INDEX;return t==="1"||t==="true"?(e.services.log("  Code intelligence skipped (AQE_SKIP_CODE_INDEX=1)"),e.services.log("  Run `aqe code index` later to build the KG on demand."),!1):e.options.skipCodeIndex?(e.services.log("  Code intelligence skipped (--skip-code-index)"),e.services.log("  Run `aqe code index` later to build the KG on demand."),!1):!0}async run(e){let{projectRoot:t}=e,s=fe(t,".agentic-qe","memory.db");if(!_t(s))return e.services.log("  Building knowledge graph..."),await this.runCodeIntelligenceScan(t,e,!1);let n=D(s);try{if(!this.checkCodeIntelligenceIndex(n))return n.close(),e.services.log("  Building knowledge graph..."),await this.runCodeIntelligenceScan(t,e,!1);let r=this.getLastIndexedAt(n);if(!r){let p=this.getKGEntryCount(n);return n.close(),e.services.log(`  Using existing index (${p} entries)`),{status:"existing",entries:p}}let i=this.getKGEntryCount(n);n.close();let d=await this.findChangedFiles(t,r);return d.length===0?(e.services.log(`  Index up to date (${i} entries)`),{status:"existing",entries:i}):(e.services.log(`  Delta scan: ${d.length} files changed since last index...`),await this.runCodeIntelligenceScan(t,e,!0,d))}catch(o){try{n.close()}catch{}throw o}}checkCodeIntelligenceIndex(e){try{return e.prepare(`
         SELECT COUNT(*) as count FROM kv_store
         WHERE namespace = 'code-intelligence:kg'
       `).get().count>0}catch{return!1}}getKGEntryCount(e){try{return e.prepare(`
         SELECT COUNT(*) as count FROM kv_store
         WHERE namespace LIKE 'code-intelligence:kg%'
-      `).get().count}catch{return 0}}async runCodeIntelligenceScan(e,t,s,n){let{KnowledgeGraphService:o}=await import("./knowledge-graph-G3LVKK6P.js"),r=ge(e,".agentic-qe","memory.db"),i={type:"sqlite",sqlite:{path:r,walMode:!0}},{backend:d}=await Qe(i,!0),m=new o(d,{namespace:"code-intelligence:kg",enableVectorEmbeddings:!0,projectRoot:e});try{let l;if(n)l=n;else{let{glob:p}=await import("tinyglobby");l=(await p(["**/*.ts","**/*.tsx","**/*.js","**/*.jsx","**/*.py"],{cwd:e,ignore:st,expandDirectories:!1})).map(f=>ge(e,f))}t.services.log(`  Scanning ${l.length} source files...`);let u=await this.runBoundedScan(m,l,s,t);if(u.status==="timeout")return t.services.warn(`  \u26A0 Code intelligence pre-scan exceeded ${nt/1e3}s phase cap. Indexed ${u.entries} entries before timeout. Last file: ${u.timeoutFile??"(unknown)"}. Init is continuing \u2014 re-run 'aqe code index' later, or report this file to https://github.com/proffesor-for-testing/agentic-qe/issues.`),u;if(u.status==="indexed"){let p=s?"Delta indexed":"Indexed";t.services.log(`  ${p} ${u.entries} entries to ${r}`),await this.buildHypergraph(r,l,t)}return u}finally{try{m.destroy()}catch{}try{await d.dispose()}catch{}}}async runBoundedScan(e,t,s,n){let o=0,r=0,i=0,d="",m=Date.now(),l=!1;s||await e.clear();let u=n.projectRoot,p=f=>f.startsWith(u)?f.slice(u.length+1):f;for(let f of t){if(Date.now()-m>nt){l=!0;break}d=f,n.services.log(`  [${i+1}/${t.length}] ${p(f)}`);try{let k=await this.withTimeout(e.index({paths:[f],incremental:!0,includeTests:!0}),tt,f);k.success&&(o+=k.value.nodesCreated,r+=k.value.edgesCreated)}catch(k){let E=k instanceof Error?k.message:String(k);E.startsWith("AQE_PER_FILE_TIMEOUT")?n.services.warn(`  \u26A0 Skipped ${p(f)} \u2014 indexing exceeded ${tt/1e3}s`):n.services.warn(`  \u26A0 Failed to index ${p(f)}: ${E}`)}i++}let y=o+r;return l?{status:"timeout",entries:y,timeoutFile:d}:{status:"indexed",entries:y}}withTimeout(e,t,s){return new Promise((n,o)=>{let r=setTimeout(()=>{o(new Error(`AQE_PER_FILE_TIMEOUT: ${s}`))},t);typeof r.unref=="function"&&r.unref(),e.then(i=>{clearTimeout(r),n(i)},i=>{clearTimeout(r),o(i)})})}async buildHypergraph(e,t,s){try{let{extractCodeIndex:n}=await import("./code-index-extractor-GWJKZ2IQ.js"),{createHypergraphEngine:o}=await import("./hypergraph-engine-RSWCB2D3.js"),r=D(e),i=await o({db:r,maxTraversalDepth:10,maxQueryResults:1e3,enableVectorSearch:!1}),d=await n(t),m=await i.buildFromIndexResult(d);r.close(),m.nodesCreated+m.edgesCreated>0&&s.services.log(`  Hypergraph: ${m.nodesCreated} nodes, ${m.edgesCreated} edges`)}catch(n){s.services.warn?.(`  Hypergraph build skipped: ${n}`)}}getLastIndexedAt(e){try{let t=e.prepare(`
+      `).get().count}catch{return 0}}async runCodeIntelligenceScan(e,t,s,n){let{KnowledgeGraphService:o}=await import("./knowledge-graph-25XXKDJN.js"),r=fe(e,".agentic-qe","memory.db"),i={type:"sqlite",sqlite:{path:r,walMode:!0}},{backend:d}=await Qe(i,!0),p=new o(d,{namespace:"code-intelligence:kg",enableVectorEmbeddings:!0,projectRoot:e});try{let l;if(n)l=n;else{let{glob:m}=await import("tinyglobby");l=(await m(["**/*.ts","**/*.tsx","**/*.js","**/*.jsx","**/*.py"],{cwd:e,ignore:st,expandDirectories:!1})).map(g=>fe(e,g))}t.services.log(`  Scanning ${l.length} source files...`);let u=await this.runBoundedScan(p,l,s,t);if(u.status==="timeout")return t.services.warn(`  \u26A0 Code intelligence pre-scan exceeded ${nt/1e3}s phase cap. Indexed ${u.entries} entries before timeout. Last file: ${u.timeoutFile??"(unknown)"}. Init is continuing \u2014 re-run 'aqe code index' later, or report this file to https://github.com/proffesor-for-testing/agentic-qe/issues.`),u;if(u.status==="indexed"){let m=s?"Delta indexed":"Indexed";t.services.log(`  ${m} ${u.entries} entries to ${r}`),await this.buildHypergraph(r,l,t)}return u}finally{try{p.destroy()}catch{}try{await d.dispose()}catch{}}}async runBoundedScan(e,t,s,n){let o=0,r=0,i=0,d="",p=Date.now(),l=!1;s||await e.clear();let u=n.projectRoot,m=g=>g.startsWith(u)?g.slice(u.length+1):g;for(let g of t){if(Date.now()-p>nt){l=!0;break}d=g,n.services.log(`  [${i+1}/${t.length}] ${m(g)}`);try{let b=await this.withTimeout(e.index({paths:[g],incremental:!0,includeTests:!0}),tt,g);b.success&&(o+=b.value.nodesCreated,r+=b.value.edgesCreated)}catch(b){let E=b instanceof Error?b.message:String(b);E.startsWith("AQE_PER_FILE_TIMEOUT")?n.services.warn(`  \u26A0 Skipped ${m(g)} \u2014 indexing exceeded ${tt/1e3}s`):n.services.warn(`  \u26A0 Failed to index ${m(g)}: ${E}`)}i++}let y=o+r;return l?{status:"timeout",entries:y,timeoutFile:d}:{status:"indexed",entries:y}}withTimeout(e,t,s){return new Promise((n,o)=>{let r=setTimeout(()=>{o(new Error(`AQE_PER_FILE_TIMEOUT: ${s}`))},t);typeof r.unref=="function"&&r.unref(),e.then(i=>{clearTimeout(r),n(i)},i=>{clearTimeout(r),o(i)})})}async buildHypergraph(e,t,s){try{let{extractCodeIndex:n}=await import("./code-index-extractor-D4DBT6OL.js"),{createHypergraphEngine:o}=await import("./hypergraph-engine-ZRY6MTDV.js"),r=D(e),i=await o({db:r,maxTraversalDepth:10,maxQueryResults:1e3,enableVectorSearch:!1}),d=await n(t),p=await i.buildFromIndexResult(d);r.close(),p.nodesCreated+p.edgesCreated>0&&s.services.log(`  Hypergraph: ${p.nodesCreated} nodes, ${p.edgesCreated} edges`)}catch(n){s.services.warn?.(`  Hypergraph build skipped: ${n}`)}}getLastIndexedAt(e){try{let t=e.prepare(`
         SELECT value FROM kv_store
         WHERE namespace = 'code-intelligence:kg'
           AND key = 'metadata:index'
-      `).get();if(!t)return null;let s=x(t.value);if(!s.indexedAt)return null;let n=new Date(s.indexedAt);return isNaN(n.getTime())?null:n}catch{return null}}async findChangedFiles(e,t){let{glob:s}=await import("tinyglobby"),n=await s(["**/*.ts","**/*.tsx","**/*.js","**/*.jsx","**/*.py"],{cwd:e,ignore:st,expandDirectories:!1}),o=t.getTime(),r=[];for(let i of n){let d=ge(e,i);try{xt(d).mtimeMs>o&&r.push(d)}catch{}}return r}};de();import{existsSync as w,mkdirSync as Z,readFileSync as rt,writeFileSync as M}from"fs";import{join as b,dirname as Dt}from"path";import{fileURLToPath as $t}from"url";var qt=$t(import.meta.url),ot=Dt(qt),jt=[["aqe","initialized"]],ee=class extends v{name="hooks";description="Configure Claude Code hooks";order=70;critical=!1;requiresPhases=["configuration"];async shouldRun(e){return e.options.noClaude?(e.services.log("  Hooks skipped (--no-claude)"),!1):e.config?.hooks?.claudeCode??!0}async run(e){let t=e.config,{projectRoot:s}=e;if(!t.hooks.claudeCode)return{configured:!1,settingsPath:"",hookTypes:[],existingAqeDetected:!1};let n=b(s,".claude");w(n)||Z(n,{recursive:!0});let o=b(n,"hooks");w(o)||Z(o,{recursive:!0});let r=b(n,"settings.json"),i={},d;if(w(r))try{let I=rt(r,"utf-8");i=x(I),d=x(I)}catch{i={}}let m=this.generateHooksConfig(t,s),l=Object.keys(m),u=i.hooks||{},p=this.hasExistingAqeHooks(u);p&&e.services.log("  Detected existing AQE hooks \u2014 replacing with updated config"),i.hooks=Ge(u,m);let y=i.env,f={memoryBackend:e.options.memoryBackend};i.env=He(y,Ue(t,f),f);let k=ze(t,s,f);Ke(i,k,{statusLine:!e.options.noStatusLine,...f});let E=i.enabledMcpjsonServers||[];if(E=E.filter(I=>I!=="aqe"),E.includes("agentic-qe")||E.push("agentic-qe"),i.enabledMcpjsonServers=E,Be(d,i,jt)){let I=We(r);I&&e.services.log(`  Backup created: ${I}`),M(r,JSON.stringify(i,null,2),"utf-8")}else e.services.log("  Settings unchanged \u2014 .claude/settings.json left as-is");this.writeHooksReadme(o,l),this.installHookAssets(o,e);try{let I=rt(r,"utf-8"),S=x(I).hooks;(!S||!this.hasExistingAqeHooks(S))&&e.services.log("  WARNING: settings.json written but AQE hooks not detected \u2014 check settings-merge logic")}catch{e.services.log("  WARNING: Could not verify settings.json after write")}return e.services.log(`  Settings: ${r}`),e.services.log(`  Hooks dir: ${o}`),e.services.log(`  Hook types: ${l.join(", ")}`),{configured:!0,settingsPath:r,hookTypes:l,existingAqeDetected:p}}writeHooksReadme(e,t){let s=b(e,"README.txt");if(w(s))return;let n=["AQE Hooks Directory","====================","","Claude Code hooks are configured in .claude/settings.json (not as files here).","This directory contains supporting infrastructure for the learning system.","","Configured hook types: "+t.join(", "),"","Files:","  settings.json  \u2014 Hook definitions (in parent .claude/ directory)","  helpers/brain-checkpoint.cjs \u2014 Auto-exports brain to aqe.rvf on session end","  cross-phase-memory.yaml \u2014 QCSD feedback loop configuration","","Manual testing:","  npx agentic-qe hooks session-start --session-id test --json",'  npx agentic-qe hooks route --task "generate tests" --json',"  npx agentic-qe hooks post-edit --file src/example.ts --success --json",""].join(`
-`);M(s,n,"utf-8")}installHookAssets(e,t){let{projectRoot:s}=t;this.installBrainCheckpoint(s,t),this.installStatusline(s,t),this.installHookShim(s,t);let n=b(e,"cross-phase-memory.yaml");if(!w(n)){let r=[b(s,"v3","assets","hooks","cross-phase-memory.yaml"),b(s,"assets","hooks","cross-phase-memory.yaml"),b(s,"node_modules","agentic-qe","v3","assets","hooks","cross-phase-memory.yaml")],i=!1;for(let d of r)if(w(d)){let{copyFileSync:m}=It("fs");m(d,n),t.services.log("  Installed cross-phase memory config"),i=!0;break}i||M(n,["# Cross-Phase Memory Hooks Configuration","# Generated by aqe init",'version: "1.0"',"enabled: true",""].join(`
-`),"utf-8")}let o=b(e,"v3-domain-workers.json");w(o)||M(o,JSON.stringify({version:"3.0",workers:[{name:"pattern-consolidator",interval:"5m",enabled:!0},{name:"routing-accuracy-monitor",interval:"10m",enabled:!0},{name:"coverage-gap-scanner",interval:"15m",enabled:!0},{name:"flaky-test-detector",interval:"30m",enabled:!0}]},null,2),"utf-8")}hasExistingAqeHooks(e){for(let t of Object.values(e))if(Array.isArray(t)){for(let s of t)if(Ve(s))return!0}return!1}installBrainCheckpoint(e,t){let s=b(e,".claude","helpers");w(s)||Z(s,{recursive:!0});let n=b(s,"brain-checkpoint.cjs"),o=[b(e,".claude","helpers","brain-checkpoint.cjs"),b(e,"node_modules","agentic-qe",".claude","helpers","brain-checkpoint.cjs"),b(ot,"..","..","..",".claude","helpers","brain-checkpoint.cjs")];for(let r of o)if(w(r)&&r!==n){me(r,n)&&t.services.log("  Installed brain-checkpoint.cjs (copied)");return}w(n)||(M(n,this.generateBrainCheckpointScript(),"utf-8"),t.services.log("  Installed brain-checkpoint.cjs (generated)"))}installStatusline(e,t){let s=b(e,".claude","helpers");w(s)||Z(s,{recursive:!0});let n=b(s,"statusline-v3.cjs"),o=[b(e,"node_modules","agentic-qe","assets","helpers","statusline-v3.cjs"),b(e,"assets","helpers","statusline-v3.cjs")];for(let r of o)if(w(r)&&r!==n){me(r,n)&&t.services.log("  Installed statusline-v3.cjs (copied)");return}w(n)||(M(n,this.generateMinimalStatuslineScript(),"utf-8"),t.services.log("  Installed statusline-v3.cjs (generated)"))}installHookShim(e,t){let s=b(e,".claude","hooks");w(s)||Z(s,{recursive:!0});let n=b(s,"aqe-hook.cjs"),o=[b(e,"node_modules","agentic-qe",".claude","hooks","aqe-hook.cjs"),b(ot,"..","..","..",".claude","hooks","aqe-hook.cjs")];for(let r of o)if(w(r)&&r!==n){me(r,n)&&t.services.log("  Installed aqe-hook.cjs (copied)");return}w(n)||t.services.log("  \u26A0 aqe-hook.cjs source not found \u2014 lifecycle hooks cannot run until AQE is reinstalled")}generateMinimalStatuslineScript(){return`#!/usr/bin/env node
+      `).get();if(!t)return null;let s=x(t.value);if(!s.indexedAt)return null;let n=new Date(s.indexedAt);return isNaN(n.getTime())?null:n}catch{return null}}async findChangedFiles(e,t){let{glob:s}=await import("tinyglobby"),n=await s(["**/*.ts","**/*.tsx","**/*.js","**/*.jsx","**/*.py"],{cwd:e,ignore:st,expandDirectories:!1}),o=t.getTime(),r=[];for(let i of n){let d=fe(e,i);try{xt(d).mtimeMs>o&&r.push(d)}catch{}}return r}};de();import{existsSync as w,mkdirSync as Z,readFileSync as rt,writeFileSync as M}from"fs";import{join as v,dirname as Dt}from"path";import{fileURLToPath as Tt}from"url";var $t=Tt(import.meta.url),ot=Dt($t),qt=[["aqe","initialized"]],ee=class extends k{name="hooks";description="Configure Claude Code hooks";order=70;critical=!1;requiresPhases=["configuration"];async shouldRun(e){return e.options.noClaude?(e.services.log("  Hooks skipped (--no-claude)"),!1):e.config?.hooks?.claudeCode??!0}async run(e){let t=e.config,{projectRoot:s}=e;if(!t.hooks.claudeCode)return{configured:!1,settingsPath:"",hookTypes:[],existingAqeDetected:!1};let n=v(s,".claude");w(n)||Z(n,{recursive:!0});let o=v(n,"hooks");w(o)||Z(o,{recursive:!0});let r=v(n,"settings.json"),i={},d;if(w(r))try{let R=rt(r,"utf-8");i=x(R),d=x(R)}catch{i={}}let p=this.generateHooksConfig(t,s),l=Object.keys(p),u=i.hooks||{},m=this.hasExistingAqeHooks(u);m&&e.services.log("  Detected existing AQE hooks \u2014 replacing with updated config"),i.hooks=He(u,p);let y=i.env,g={memoryBackend:e.options.memoryBackend};i.env=Ge(y,Ue(t,g),g);let b=ze(t,s,g);Ke(i,b,{statusLine:!e.options.noStatusLine,...g});let E=i.enabledMcpjsonServers||[];if(E=E.filter(R=>R!=="aqe"),E.includes("agentic-qe")||E.push("agentic-qe"),i.enabledMcpjsonServers=E,Be(d,i,qt)){let R=Ve(r);R&&e.services.log(`  Backup created: ${R}`),M(r,JSON.stringify(i,null,2),"utf-8")}else e.services.log("  Settings unchanged \u2014 .claude/settings.json left as-is");this.writeHooksReadme(o,l),this.installHookAssets(o,e);try{let R=rt(r,"utf-8"),P=x(R).hooks;(!P||!this.hasExistingAqeHooks(P))&&e.services.log("  WARNING: settings.json written but AQE hooks not detected \u2014 check settings-merge logic")}catch{e.services.log("  WARNING: Could not verify settings.json after write")}return e.services.log(`  Settings: ${r}`),e.services.log(`  Hooks dir: ${o}`),e.services.log(`  Hook types: ${l.join(", ")}`),{configured:!0,settingsPath:r,hookTypes:l,existingAqeDetected:m}}writeHooksReadme(e,t){let s=v(e,"README.txt");if(w(s))return;let n=["AQE Hooks Directory","====================","","Claude Code hooks are configured in .claude/settings.json (not as files here).","This directory contains supporting infrastructure for the learning system.","","Configured hook types: "+t.join(", "),"","Files:","  settings.json  \u2014 Hook definitions (in parent .claude/ directory)","  helpers/brain-checkpoint.cjs \u2014 Auto-exports brain to aqe.rvf on session end","  cross-phase-memory.yaml \u2014 QCSD feedback loop configuration","","Manual testing:","  npx agentic-qe hooks session-start --session-id test --json",'  npx agentic-qe hooks route --task "generate tests" --json',"  npx agentic-qe hooks post-edit --file src/example.ts --success --json",""].join(`
+`);M(s,n,"utf-8")}installHookAssets(e,t){let{projectRoot:s}=t;this.installBrainCheckpoint(s,t),this.installStatusline(s,t),this.installHookShim(s,t);let n=v(e,"cross-phase-memory.yaml");if(!w(n)){let r=[v(s,"v3","assets","hooks","cross-phase-memory.yaml"),v(s,"assets","hooks","cross-phase-memory.yaml"),v(s,"node_modules","agentic-qe","v3","assets","hooks","cross-phase-memory.yaml")],i=!1;for(let d of r)if(w(d)){let{copyFileSync:p}=Rt("fs");p(d,n),t.services.log("  Installed cross-phase memory config"),i=!0;break}i||M(n,["# Cross-Phase Memory Hooks Configuration","# Generated by aqe init",'version: "1.0"',"enabled: true",""].join(`
+`),"utf-8")}let o=v(e,"v3-domain-workers.json");w(o)||M(o,JSON.stringify({version:"3.0",workers:[{name:"pattern-consolidator",interval:"5m",enabled:!0},{name:"routing-accuracy-monitor",interval:"10m",enabled:!0},{name:"coverage-gap-scanner",interval:"15m",enabled:!0},{name:"flaky-test-detector",interval:"30m",enabled:!0}]},null,2),"utf-8")}hasExistingAqeHooks(e){for(let t of Object.values(e))if(Array.isArray(t)){for(let s of t)if(We(s))return!0}return!1}installBrainCheckpoint(e,t){let s=v(e,".claude","helpers");w(s)||Z(s,{recursive:!0});let n=v(s,"brain-checkpoint.cjs"),o=[v(e,".claude","helpers","brain-checkpoint.cjs"),v(e,"node_modules","agentic-qe",".claude","helpers","brain-checkpoint.cjs"),v(ot,"..","..","..",".claude","helpers","brain-checkpoint.cjs")];for(let r of o)if(w(r)&&r!==n){pe(r,n)&&t.services.log("  Installed brain-checkpoint.cjs (copied)");return}w(n)||(M(n,this.generateBrainCheckpointScript(),"utf-8"),t.services.log("  Installed brain-checkpoint.cjs (generated)"))}installStatusline(e,t){let s=v(e,".claude","helpers");w(s)||Z(s,{recursive:!0});let n=v(s,"statusline-v3.cjs"),o=[v(e,"node_modules","agentic-qe","assets","helpers","statusline-v3.cjs"),v(e,"assets","helpers","statusline-v3.cjs")];for(let r of o)if(w(r)&&r!==n){pe(r,n)&&t.services.log("  Installed statusline-v3.cjs (copied)");return}w(n)||(M(n,this.generateMinimalStatuslineScript(),"utf-8"),t.services.log("  Installed statusline-v3.cjs (generated)"))}installHookShim(e,t){let s=v(e,".claude","hooks");w(s)||Z(s,{recursive:!0});let n=v(s,"aqe-hook.cjs"),o=[v(e,"node_modules","agentic-qe",".claude","hooks","aqe-hook.cjs"),v(ot,"..","..","..",".claude","hooks","aqe-hook.cjs")];for(let r of o)if(w(r)&&r!==n){pe(r,n)&&t.services.log("  Installed aqe-hook.cjs (copied)");return}w(n)||t.services.log("  \u26A0 aqe-hook.cjs source not found \u2014 lifecycle hooks cannot run until AQE is reinstalled")}generateMinimalStatuslineScript(){return`#!/usr/bin/env node
 /**
  * Agentic QE v3 Statusline (minimal fallback, generated by aqe init)
  * For the full statusline, reinstall: npx agentic-qe init --auto
@@ -60,6 +60,7 @@ console.log(\`\\x1b[1m\\x1b[35m\u258A Agentic QE v3\\x1b[0m\${branchStr}\${patSt
  *   node brain-checkpoint.cjs verify   # Verify aqe.rvf exists (session-start)
  */
 const { execFileSync } = require('child_process');
+const crypto = require('crypto');
 const fs = require('fs');
 const path = require('path');
 
@@ -68,6 +69,11 @@ const AQE_DIR = path.join(PROJECT_ROOT, '.agentic-qe');
 const RVF_PATH = path.join(AQE_DIR, 'aqe.rvf');
 const DB_PATH = path.join(AQE_DIR, 'memory.db');
 const MAX_AGE_HOURS = 24;
+// #1238: after a too-large export, skip the Stop-hook export for a while
+// unless a newer aqe.rvf shows that an export has succeeded since.
+const SKIP_PATH = path.join(AQE_DIR, 'brain-checkpoint.skip.json');
+const RETRY_ENV = Number.parseFloat(process.env.AQE_BRAIN_CHECKPOINT_RETRY_HOURS || '');
+const TOO_LARGE_RETRY_HOURS = Number.isFinite(RETRY_ENV) && RETRY_ENV >= 0 ? RETRY_ENV : 6;
 // Windows (#872): never execFile aqe.cmd (EINVAL without a shell); reuse the
 // hook shim's resolver, which runs the AQE bundle via node instead.
 function aqeInvocation() {
@@ -88,32 +94,110 @@ function aqeInvocation() {
 
 function log(msg) { process.stderr.write('[brain-checkpoint] ' + msg + '\\n'); }
 
+function activeSkip() {
+  let st; try { st = fs.lstatSync(SKIP_PATH); } catch { return null; }
+  let skip = null;
+  if (st.isFile()) { try { skip = JSON.parse(fs.readFileSync(SKIP_PATH, 'utf8')); } catch { /* unreadable */ } }
+  const at = skip ? Date.parse(skip.at) : NaN;
+  let rvfMtime = 0; try { rvfMtime = fs.lstatSync(RVF_PATH).mtimeMs; } catch { /* absent */ }
+  if (!Number.isFinite(at) || Date.now() >= at + TOO_LARGE_RETRY_HOURS * 3600000 || rvfMtime > at) {
+    try { fs.unlinkSync(SKIP_PATH); } catch { /* best-effort */ }
+    return null;
+  }
+  return skip;
+}
+
+function writeSkip(reason) {
+  const at = new Date();
+  const skip = { reason, at: at.toISOString(), retryAfter: new Date(at.getTime() + TOO_LARGE_RETRY_HOURS * 3600000).toISOString() };
+  // 'wx' after unlink: never write through a planted symlink (#970).
+  try { try { fs.unlinkSync(SKIP_PATH); } catch { /* absent */ } fs.writeFileSync(SKIP_PATH, JSON.stringify(skip) + '\\n', { flag: 'wx' }); } catch { /* best-effort */ }
+  return skip;
+}
+
+// Export to a temp store next to aqe.rvf; rename it over aqe.rvf only on
+// success, so a failed, too-large or killed export keeps the last checkpoint.
+const RVF_SIDECARS = ['.idmap.json', '.manifest.json'];
+const TMP_PREFIX = path.basename(RVF_PATH) + '.tmp-';
+function removeEntry(p) { try { fs.unlinkSync(p); } catch (e) { if (!e || e.code !== 'ENOENT') throw e; } }
+function isPidAlive(pid) { try { process.kill(pid, 0); return true; } catch (e) { return !!e && e.code === 'EPERM'; } }
+function removeByPrefix(prefix, keep) {
+  let entries = []; try { entries = fs.readdirSync(AQE_DIR); } catch { return; }
+  for (const entry of entries) {
+    if (!entry.startsWith(prefix) || (keep && keep(entry))) continue;
+    try { removeEntry(path.join(AQE_DIR, entry)); } catch { /* best-effort */ }
+  }
+}
+function sweepStaleTmp() {
+  removeByPrefix(TMP_PREFIX, (entry) => {
+    const pid = Number.parseInt(entry.slice(TMP_PREFIX.length).split('-')[0], 10);
+    return !Number.isInteger(pid) || pid <= 0 || isPidAlive(pid);
+  });
+}
+function lexists(p) { try { fs.lstatSync(p); return true; } catch { return false; } }
+// rename() replaces a planted symlink without writing through it (#970). The
+// store goes first: if that fails nothing changed. If a sidecar rename fails
+// afterwards, the stale sidecar is removed, so the new store is never read
+// with the previous export's idmap.
+function promote(tmp) {
+  fs.renameSync(tmp, RVF_PATH);
+  for (const suffix of RVF_SIDECARS) {
+    try {
+      if (lexists(tmp + suffix)) fs.renameSync(tmp + suffix, RVF_PATH + suffix);
+      else removeEntry(RVF_PATH + suffix);
+    } catch { try { removeEntry(RVF_PATH + suffix); } catch { /* best-effort */ } }
+  }
+}
+
 function exportBrain() {
   if (!fs.existsSync(DB_PATH)) { log('No memory.db, skipping'); return { exported: false }; }
   const aqe = aqeInvocation();
   if (!aqe.cmd) { log('Export skipped: ' + aqe.reason); return { exported: false, reason: aqe.reason }; }
-  // Never write through a committed symlink: .agentic-qe must be a real dir, and
-  // unlink (not existsSync) drops a planted aqe.rvf link, even a dangling one.
+  // Never write through a committed symlink: .agentic-qe must be a real dir.
   let st; try { st = fs.lstatSync(AQE_DIR); } catch { /* missing */ }
   if (!st || !st.isDirectory()) { log('Export skipped: .agentic-qe is a symlink'); return { exported: false }; }
-  for (const f of [RVF_PATH, RVF_PATH + '.idmap.json']) { try { fs.unlinkSync(f); } catch { /* absent */ } }
+  const skip = activeSkip();
+  if (skip) {
+    log('Export skipped until ' + skip.retryAfter + ': ' + skip.reason);
+    return { exported: false, skipped: true, reason: skip.reason, retryAfter: skip.retryAfter };
+  }
+  sweepStaleTmp();
+  const tmp = path.join(AQE_DIR, TMP_PREFIX + process.pid + '-' + crypto.randomBytes(4).toString('hex'));
   try {
+    for (const suffix of ['', ...RVF_SIDECARS]) removeEntry(tmp + suffix);
     const result = execFileSync(
-      aqe.cmd, [...aqe.args, 'brain', 'export', '-o', RVF_PATH, '--format', 'rvf'],
-      { timeout: 60000, encoding: 'utf-8', windowsHide: true }
+      aqe.cmd, [...aqe.args, 'brain', 'export', '-o', tmp, '--format', 'rvf'],
+      { timeout: 60000, encoding: 'utf-8', windowsHide: true, stdio: ['ignore', 'pipe', 'pipe'] }
     );
+    // A zero exit without a store is a failure, not an empty checkpoint.
+    if (!lexists(tmp)) throw new Error('brain export exited 0 but wrote no store');
+    promote(tmp);
     const m = result.match(/Patterns:\\s+(\\d+)/);
     const p = m ? m[1] : '0';
     log('Exported ' + p + ' patterns to aqe.rvf');
     return { exported: true, patterns: parseInt(p) };
   } catch (e) {
-    log('Export failed: ' + e.message);
+    const tooLarge = (String(e.stderr || '') + String(e.stdout || '')).match(/RVF_KERNEL_TOO_LARGE:[^\\n]*/);
+    if (tooLarge) {
+      const skip = writeSkip(tooLarge[0].trim());
+      log('Export failed: ' + skip.reason);
+      log('Skipping the checkpoint export until ' + skip.retryAfter + ' (AQE_BRAIN_CHECKPOINT_RETRY_HOURS sets the wait).');
+      return { exported: false, tooLarge: true, reason: skip.reason, retryAfter: skip.retryAfter };
+    }
+    log('Export failed: ' + e.message + ' (previous aqe.rvf kept)');
     return { exported: false, reason: e.message };
+  } finally {
+    removeByPrefix(path.basename(tmp));
   }
 }
 
 function verifyBrain() {
   if (!fs.existsSync(RVF_PATH)) {
+    const skip = activeSkip();
+    if (skip) {
+      log('No aqe.rvf found; checkpoint export paused until ' + skip.retryAfter + ': ' + skip.reason);
+      return { valid: false, reason: 'missing', skippedUntil: skip.retryAfter };
+    }
     log('No aqe.rvf found');
     return { valid: false, reason: 'missing' };
   }
@@ -128,10 +212,10 @@ function verifyBrain() {
 const cmd = process.argv[2] || 'verify';
 const result = cmd === 'export' ? exportBrain() : verifyBrain();
 if (process.argv.includes('--json')) process.stdout.write(JSON.stringify(result));
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g({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&R.push("cline"),a.errors.length>0&&e.services.warn(`Cline warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Cline MCP: ${a.configPath}`),a.modeInstalled&&e.services.log(`  Cline mode: ${a.modePath}`)}if(n.withKiloCode||n.autoMode&&A(_(s,".kilocode"))){let{createKiloCodeInstaller:g}=await import("./kilocode-installer-KZ2O4LF3.js"),a=await g({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&R.push("kilocode"),a.errors.length>0&&e.services.warn(`Kilo Code warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Kilo Code MCP: ${a.configPath}`),a.modeInstalled&&e.services.log(`  Kilo Code mode: ${a.modePath}`)}if(n.withRooCode||n.autoMode&&A(_(s,".roo"))){let{createRooCodeInstaller:g}=await import("./roocode-installer-XFO6JSVN.js"),a=await g({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&R.push("roocode"),a.errors.length>0&&e.services.warn(`Roo Code warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Roo Code MCP: ${a.configPath}`),a.modeInstalled&&e.services.log(`  Roo Code mode: ${a.modePath}`)}if(n.withCodex||n.autoMode&&A(_(s,".codex"))){let{createCodexInstaller:g}=await import("./codex-installer-6NINVWXJ.js"),a=await g({projectRoot:s,overwrite:r,installMcp:!n.noMcp,includeRuflo:n.withRuflo,guidancePolicy:n.codexGuidance,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();E={policy:a.guidancePolicy,ownedBytes:a.ownedGuidanceBytes},B={hooks:a.components.hooks,skills:a.components.skills},a.mcpConfigured&&R.push("codex"),a.errors.length>0&&e.services.warn(`Codex warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Codex MCP: ${a.configPath}`),a.agentsMdInstalled&&e.services.log(`  Codex AGENTS.md: ${a.agentsMdPath}`),a.hooksConfigured&&e.services.log(`  Codex hooks: ${a.hooksPath}`),a.skillsInstalled>0&&e.services.log(`  Codex skills: ${a.skillsInstalled} installed`),e.services.log(n.withRuflo?"  Codex Ruflo integration: enabled":"  Codex Ruflo integration: not installed (opt in with --with-ruflo)")}if(n.withWindsurf||n.autoMode&&A(_(s,".windsurf"))){let{createWindsurfInstaller:g}=await import("./windsurf-installer-33FBTXJU.js"),a=await g({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&R.push("windsurf"),a.errors.length>0&&e.services.warn(`Windsurf warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Windsurf MCP: ${a.configPath}`),a.rulesInstalled&&e.services.log(`  Windsurf rules: ${a.rulesPath}`)}if(n.withContinueDev||n.autoMode&&A(_(s,".continue"))){let{createContinueDevInstaller:g}=await import("./continuedev-installer-VA7RIXW5.js"),a=await g({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&R.push("continuedev"),a.errors.length>0&&e.services.warn(`Continue.dev warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Continue.dev MCP: ${a.configPath}`),a.rulesInstalled&&e.services.log(`  Continue.dev rules: ${a.rulesPath}`)}return R.length>0&&e.services.log(`  Platforms configured: ${R.join(", ")}`),{skillsInstalled:i,agentsInstalled:d,n8nAgents:m,n8nSkills:l,openCodeAgents:u,openCodeSkills:p,kiroAgents:y,kiroSkills:f,kiroHooks:k,platformsConfigured:R,browserEngine:S,codexGuidance:E,codexComponents:B,retiredAssetsRemoved:I,retiredAssetsKept:he}}detectVersionUpgrade(e){let t=e.config.version,s=_(e.projectRoot,".agentic-qe","config.yaml");if(A(s))try{let i=Ut(s,"utf-8").match(/version:\s*"?([^"\n]+)"?/)?.[1];if(i===t)return!1;if(i!==void 0)return!0}catch{}let n=_(e.projectRoot,".claude","agents","v3");try{return A(n)&&Kt(n).some(o=>o.endsWith(".md")&&o.startsWith("qe-"))}catch{return!1}}};import{existsSync as zt,mkdirSync as Jt}from"fs";import{join as N,dirname as Yt}from"path";import{fileURLToPath as Xt}from"url";var Zt=Xt(import.meta.url),Bs=Yt(Zt),ie=class extends v{name="workers";description="Configure background workers";order=100;critical=!1;requiresPhases=["configuration"];async shouldRun(e){if(e.options.memoryBackend==="memory")return!1;let t=e.config;return t?.workers?.daemonAutoStart&&(t?.workers?.enabled?.length??0)>0}async run(e){let t=e.config,{projectRoot:s}=e;if(!t.workers.daemonAutoStart||t.workers.enabled.length===0)return{workersDir:"",workersConfigured:0,registryPath:"",daemonStarted:!1,daemonPid:null};let n=N(s,".agentic-qe","workers");zt(n)||Jt(n,{recursive:!0});let o={"learning-consolidation":18e5,"pattern-consolidator":18e5,"test-health":3e5,"coverage-tracker":6e5,"coverage-gap-scanner":6e5,"flaky-detector":9e5,"flaky-test-detector":9e5,"security-scan":18e5,"quality-gate":3e5,"compliance-checker":18e5,"defect-predictor":9e5,"regression-monitor":6e5,"routing-accuracy-monitor":9e5,"performance-baseline":36e5,"cloud-sync":3e5},r={};for(let y of t.workers.enabled)r[y]={name:y,enabled:!0,interval:t.workers.intervals[y]||o[y]||6e4,lastRun:null,status:"pending"};let i=N(n,"registry.json"),d={version:t.version,maxConcurrent:t.workers.maxConcurrent,workers:r,createdAt:new Date().toISOString(),daemonPid:null};V(i,d,[["createdAt"]]);for(let y of t.workers.enabled){let f=N(n,`${y}.json`),k={name:y,enabled:!0,interval:t.workers.intervals[y]||o[y]||6e4,projectRoot:s,dataDir:N(s,".agentic-qe","data"),createdAt:new Date().toISOString()};V(f,k,[["createdAt"]])}let m=N(n,"start-daemon.cjs");W(m,`#!/usr/bin/env node
+  Then re-run \`aqe init --browser-engine\` to verify. The rest of the AQE install will continue.`)}else P={status:"skipped",packageSpec:F,message:n.minimal?"minimal mode":"browser setup not requested; run aqe init --browser-engine"};if(n.withN8n){let h=await et({projectRoot:s,installAgents:!0,installSkills:!0,overwrite:r,n8nApiConfig:n.n8nApiConfig}).install();p=h.agentsInstalled.length,l=h.skillsInstalled.length,h.errors.length>0&&e.services.warn(`N8n warnings: ${h.errors.join(", ")}`)}let $e=n.autoMode&&A(_(s,"opencode.json"));if(n.withOpenCode||$e){let{createOpenCodeInstaller:f}=await import("./opencode-installer-YUJNXXWS.js"),a=await f({projectRoot:s,installAgents:!0,installSkills:!0,installTools:!1,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();u=a.agentsInstalled.length,m=a.skillsInstalled.length,a.errors.length>0&&e.services.warn(`OpenCode warnings: ${a.errors.join(", ")}`)}e.services.log(`  Skills: ${i}`),e.services.log(`  Agents: ${d}`),n.withN8n&&(e.services.log(`  N8n agents: ${p}`),e.services.log(`  N8n skills: ${l}`)),(n.withOpenCode||$e)&&(e.services.log(`  OpenCode agents: ${u}`),e.services.log(`  OpenCode skills: ${m}`));let Pt=n.autoMode&&A(_(s,".kiro"));if(n.withKiro||Pt){let{createKiroInstaller:f}=await import("./kiro-installer-UKKPGPDC.js"),a=await f({projectRoot:s,installAgents:!0,installSkills:!0,installHooks:!0,installSteering:!0,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();y=a.agentsInstalled.length,g=a.skillsInstalled.length,b=a.hooksInstalled.length,a.errors.length>0&&e.services.warn(`Kiro warnings: ${a.errors.join(", ")}`),e.services.log(`  Kiro agents: ${y}`),e.services.log(`  Kiro skills: ${g}`),e.services.log(`  Kiro hooks: ${b}`),e.services.log(`  Kiro steering: ${a.steeringInstalled.length}`),a.mcpConfigured&&e.services.log("  Kiro MCP: .kiro/settings/mcp.json")}let I=[];if(n.withCopilot||n.autoMode&&A(_(s,".vscode"))){let{createCopilotInstaller:f}=await import("./copilot-installer-Y3XC7BTT.js"),a=await f({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&I.push("copilot"),a.errors.length>0&&e.services.warn(`Copilot warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Copilot MCP: ${a.configPath}`),a.rulesInstalled&&e.services.log(`  Copilot rules: ${a.rulesPath}`)}if(n.withCursor||n.autoMode&&A(_(s,".cursor"))){let{createCursorInstaller:f}=await import("./cursor-installer-F4UYQHIN.js"),a=await f({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&I.push("cursor"),a.errors.length>0&&e.services.warn(`Cursor warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Cursor MCP: ${a.configPath}`),a.rulesInstalled&&e.services.log(`  Cursor rules: ${a.rulesPath}`)}if(n.withCline){let{createClineInstaller:f}=await import("./cline-installer-EPE7IOZE.js"),a=await f({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&I.push("cline"),a.errors.length>0&&e.services.warn(`Cline warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Cline MCP: ${a.configPath}`),a.modeInstalled&&e.services.log(`  Cline mode: ${a.modePath}`)}if(n.withKiloCode||n.autoMode&&A(_(s,".kilocode"))){let{createKiloCodeInstaller:f}=await import("./kilocode-installer-IJN7XKBH.js"),a=await f({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&I.push("kilocode"),a.errors.length>0&&e.services.warn(`Kilo Code warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Kilo Code MCP: ${a.configPath}`),a.modeInstalled&&e.services.log(`  Kilo Code mode: ${a.modePath}`)}if(n.withRooCode||n.autoMode&&A(_(s,".roo"))){let{createRooCodeInstaller:f}=await import("./roocode-installer-IZ2S7PH2.js"),a=await f({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&I.push("roocode"),a.errors.length>0&&e.services.warn(`Roo Code warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Roo Code MCP: ${a.configPath}`),a.modeInstalled&&e.services.log(`  Roo Code mode: ${a.modePath}`)}if(n.withCodex||n.autoMode&&A(_(s,".codex"))){let{createCodexInstaller:f}=await import("./codex-installer-633SM4LR.js"),a=await f({projectRoot:s,overwrite:r,installMcp:!n.noMcp,includeRuflo:n.withRuflo,guidancePolicy:n.codexGuidance,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();E={policy:a.guidancePolicy,ownedBytes:a.ownedGuidanceBytes},B={hooks:a.components.hooks,skills:a.components.skills},a.mcpConfigured&&I.push("codex"),a.errors.length>0&&e.services.warn(`Codex warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Codex MCP: ${a.configPath}`),a.agentsMdInstalled&&e.services.log(`  Codex AGENTS.md: ${a.agentsMdPath}`),a.hooksConfigured&&e.services.log(`  Codex hooks: ${a.hooksPath}`),a.skillsInstalled>0&&e.services.log(`  Codex skills: ${a.skillsInstalled} installed`),e.services.log(n.withRuflo?"  Codex Ruflo integration: enabled":"  Codex Ruflo integration: not installed (opt in with --with-ruflo)")}if(n.withWindsurf||n.autoMode&&A(_(s,".windsurf"))){let{createWindsurfInstaller:f}=await import("./windsurf-installer-ITPU2IYL.js"),a=await f({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&I.push("windsurf"),a.errors.length>0&&e.services.warn(`Windsurf warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Windsurf MCP: ${a.configPath}`),a.rulesInstalled&&e.services.log(`  Windsurf rules: ${a.rulesPath}`)}if(n.withContinueDev||n.autoMode&&A(_(s,".continue"))){let{createContinueDevInstaller:f}=await import("./continuedev-installer-QH42TKMS.js"),a=await f({projectRoot:s,overwrite:r,memoryBackend:n.memoryBackend==="memory"?"memory":void 0}).install();a.mcpConfigured&&I.push("continuedev"),a.errors.length>0&&e.services.warn(`Continue.dev warnings: ${a.errors.join(", ")}`),a.mcpConfigured&&e.services.log(`  Continue.dev MCP: ${a.configPath}`),a.rulesInstalled&&e.services.log(`  Continue.dev rules: ${a.rulesPath}`)}return I.length>0&&e.services.log(`  Platforms configured: ${I.join(", ")}`),{skillsInstalled:i,agentsInstalled:d,n8nAgents:p,n8nSkills:l,openCodeAgents:u,openCodeSkills:m,kiroAgents:y,kiroSkills:g,kiroHooks:b,platformsConfigured:I,browserEngine:P,codexGuidance:E,codexComponents:B,retiredAssetsRemoved:R,retiredAssetsKept:he}}detectVersionUpgrade(e){let t=e.config.version,s=_(e.projectRoot,".agentic-qe","config.yaml");if(A(s))try{let i=Ut(s,"utf-8").match(/version:\s*"?([^"\n]+)"?/)?.[1];if(i===t)return!1;if(i!==void 0)return!0}catch{}let n=_(e.projectRoot,".claude","agents","v3");try{return A(n)&&Kt(n).some(o=>o.endsWith(".md")&&o.startsWith("qe-"))}catch{return!1}}};import{existsSync as zt,mkdirSync as Jt}from"fs";import{join as N,dirname as Yt}from"path";import{fileURLToPath as Xt}from"url";var Zt=Xt(import.meta.url),Bs=Yt(Zt),ie=class extends k{name="workers";description="Configure background workers";order=100;critical=!1;requiresPhases=["configuration"];async shouldRun(e){if(e.options.memoryBackend==="memory")return!1;let t=e.config;return t?.workers?.daemonAutoStart&&(t?.workers?.enabled?.length??0)>0}async run(e){let t=e.config,{projectRoot:s}=e;if(!t.workers.daemonAutoStart||t.workers.enabled.length===0)return{workersDir:"",workersConfigured:0,registryPath:"",daemonStarted:!1,daemonPid:null};let n=N(s,".agentic-qe","workers");zt(n)||Jt(n,{recursive:!0});let o={"learning-consolidation":18e5,"pattern-consolidator":18e5,"test-health":3e5,"coverage-tracker":6e5,"coverage-gap-scanner":6e5,"flaky-detector":9e5,"flaky-test-detector":9e5,"security-scan":18e5,"quality-gate":3e5,"compliance-checker":18e5,"defect-predictor":9e5,"regression-monitor":6e5,"routing-accuracy-monitor":9e5,"performance-baseline":36e5,"cloud-sync":3e5},r={};for(let y of t.workers.enabled)r[y]={name:y,enabled:!0,interval:t.workers.intervals[y]||o[y]||6e4,lastRun:null,status:"pending"};let i=N(n,"registry.json"),d={version:t.version,maxConcurrent:t.workers.maxConcurrent,workers:r,createdAt:new Date().toISOString(),daemonPid:null};W(i,d,[["createdAt"]]);for(let y of t.workers.enabled){let g=N(n,`${y}.json`),b={name:y,enabled:!0,interval:t.workers.intervals[y]||o[y]||6e4,projectRoot:s,dataDir:N(s,".agentic-qe","data"),createdAt:new Date().toISOString()};W(g,b,[["createdAt"]])}let p=N(n,"start-daemon.cjs");V(p,`#!/usr/bin/env node
 // AQE v3 Worker Daemon Startup Script (cross-platform)
 // Generated by aqe init
 // Starts the MCP server with background workers enabled
@@ -325,7 +409,7 @@ setTimeout(() => {
   console.log('Log file: ' + logFile);
   console.log('To stop: node ' + join(workersDir, 'stop-daemon.cjs'));
 }, 3000);
-`);let u=N(n,"stop-daemon.cjs");return W(u,`#!/usr/bin/env node
+`);let u=N(n,"stop-daemon.cjs");return V(u,`#!/usr/bin/env node
 // AQE v3 Worker Daemon Stop Script (cross-platform)
 // Generated by aqe init
 
@@ -348,7 +432,7 @@ try {
   console.log('Daemon not running (stale PID file)');
   try { unlinkSync(pidFile); } catch {}
 }
-`),e.services.log(`  Workers dir: ${n}`),e.services.log(`  Workers: ${t.workers.enabled.join(", ")}`),e.services.log(`  Registry: ${i}`),{workersDir:n,workersConfigured:t.workers.enabled.length,registryPath:i,daemonStarted:!1,daemonPid:null}}};import{existsSync as en,readFileSync as tn,writeFileSync as _e}from"fs";import{join as yt}from"path";var ae=class extends v{name="claude-md";description="Generate CLAUDE.md";order=110;critical=!1;requiresPhases=["configuration"];async shouldRun(e){return e.options.noClaude?(e.services.log("  CLAUDE.md skipped (--no-claude)"),!1):!0}async run(e){let t=e.config,{projectRoot:s}=e,n=yt(s,"CLAUDE.md"),o=this.generateContent(t),r=!1;if(en(n)){let i=tn(n,"utf-8");if(i.includes("## Agentic QE v3"))return e.services.log("  CLAUDE.md already has AQE section"),{generated:!1,path:n,backupCreated:!1};let d=yt(s,"CLAUDE.md.backup");_e(d,i,"utf-8"),r=!0,_e(n,i+`
+`),e.services.log(`  Workers dir: ${n}`),e.services.log(`  Workers: ${t.workers.enabled.join(", ")}`),e.services.log(`  Registry: ${i}`),{workersDir:n,workersConfigured:t.workers.enabled.length,registryPath:i,daemonStarted:!1,daemonPid:null}}};import{existsSync as en,readFileSync as tn,writeFileSync as _e}from"fs";import{join as yt}from"path";var ae=class extends k{name="claude-md";description="Generate CLAUDE.md";order=110;critical=!1;requiresPhases=["configuration"];async shouldRun(e){return e.options.noClaude?(e.services.log("  CLAUDE.md skipped (--no-claude)"),!1):!0}async run(e){let t=e.config,{projectRoot:s}=e,n=yt(s,"CLAUDE.md"),o=this.generateContent(t),r=!1;if(en(n)){let i=tn(n,"utf-8");if(i.includes("## Agentic QE v3"))return e.services.log("  CLAUDE.md already has AQE section"),{generated:!1,path:n,backupCreated:!1};let d=yt(s,"CLAUDE.md.backup");_e(d,i,"utf-8"),r=!0,_e(n,i+`
 
 `+o,"utf-8")}else _e(n,o,"utf-8");return e.services.log(`  Path: ${n}`),r&&e.services.log("  Backup created"),{generated:!0,path:n,backupCreated:r}}generateContent(e){let t=e.domains.enabled.slice(0,6).join(", "),s=Math.max(0,e.domains.enabled.length-6);return`## Agentic QE v3
 
@@ -512,7 +596,7 @@ Task({ prompt: "Security audit", subagent_type: "qe-security-scanner", run_in_ba
 
 ---
 *Generated by AQE v3 init - ${new Date().toISOString()}*
-`}};import{existsSync as q,readFileSync as nn}from"fs";import{join as L,dirname as sn}from"path";import{mkdirSync as vt}from"fs";ye();var rn=/^# \d{4}-\d{2}-\d{2}T[\d:.]+Z$/,xe=new Set(["__proto__","constructor","prototype"]),le=class extends v{name="verification";description="Verify installation";order=120;critical=!0;requiresPhases=["database","configuration"];async run(e){let t=e.config,{projectRoot:s}=e,n=[],o=e.options.memoryBackend==="memory",r=L(s,".agentic-qe","memory.db");n.push({name:o?"Database (in-memory mode)":"Database exists",passed:o||q(r)}),n.push({name:".agentic-qe directory",passed:q(L(s,".agentic-qe"))});let i=L(s,".agentic-qe","config.yaml");await this.saveConfig(t,s),n.push({name:"Config saved",passed:q(i)});let d=o?!0:await this.writeVersionToDb(t.version,s);n.push({name:"Version marker",passed:d});let m=["Database exists",".agentic-qe directory","Config saved"],l=n.filter(u=>m.includes(u.name)).every(u=>u.passed);e.services.log("  Verification checks:");for(let u of n){let p=m.includes(u.name),y=u.passed?"\u2713":p?"\u2717":"\u26A0",f=!p&&!u.passed?" (optional)":"";e.services.log(`    ${y} ${u.name}${f}`)}return{verified:l,versionWritten:d,configSaved:q(i),checks:n}}async writeVersionToDb(e,t){let s=L(t,".agentic-qe","memory.db");try{let n=sn(s);q(n)||vt(n,{recursive:!0});let o=D(s);try{o.exec(`
+`}};import{existsSync as $,readFileSync as nn}from"fs";import{join as L,dirname as sn}from"path";import{mkdirSync as kt}from"fs";ye();var rn=/^# \d{4}-\d{2}-\d{2}T[\d:.]+Z$/,xe=new Set(["__proto__","constructor","prototype"]),le=class extends k{name="verification";description="Verify installation";order=120;critical=!0;requiresPhases=["database","configuration"];async run(e){let t=e.config,{projectRoot:s}=e,n=[],o=e.options.memoryBackend==="memory",r=L(s,".agentic-qe","memory.db");n.push({name:o?"Database (in-memory mode)":"Database exists",passed:o||$(r)}),n.push({name:".agentic-qe directory",passed:$(L(s,".agentic-qe"))});let i=L(s,".agentic-qe","config.yaml");await this.saveConfig(t,s),n.push({name:"Config saved",passed:$(i)});let d=o?!0:await this.writeVersionToDb(t.version,s);n.push({name:"Version marker",passed:d});let p=["Database exists",".agentic-qe directory","Config saved"],l=n.filter(u=>p.includes(u.name)).every(u=>u.passed);e.services.log("  Verification checks:");for(let u of n){let m=p.includes(u.name),y=u.passed?"\u2713":m?"\u2717":"\u26A0",g=!m&&!u.passed?" (optional)":"";e.services.log(`    ${y} ${u.name}${g}`)}return{verified:l,versionWritten:d,configSaved:$(i),checks:n}}async writeVersionToDb(e,t){let s=L(t,".agentic-qe","memory.db");try{let n=sn(s);$(n)||kt(n,{recursive:!0});let o=D(s);try{o.exec(`
           CREATE TABLE IF NOT EXISTS kv_store (
             key TEXT NOT NULL,
             namespace TEXT NOT NULL,
@@ -527,9 +611,9 @@ Task({ prompt: "Security audit", subagent_type: "qe-security-scanner", run_in_ba
         `).run("aqe_version",JSON.stringify(e),r),o.prepare(`
           INSERT OR REPLACE INTO kv_store (key, namespace, value, created_at)
           VALUES (?, '_system', ?, ?)
-        `).run("init_timestamp",JSON.stringify(new Date().toISOString()),r),o.close(),!0}catch{return o.close(),!1}}catch{return!1}}async saveConfig(e,t){let s=L(t,".agentic-qe");q(s)||vt(s,{recursive:!0});let n=L(s,"config.yaml");if(q(n)){let r=this.loadExistingConfig(n);r&&(e=this.mergeConfigs(e,r))}let o=this.configToYAML(e);Le(n,o,rn)}loadExistingConfig(e){try{let t=nn(e,"utf-8");return this.parseYAML(t)}catch{return null}}parseYAML(e){try{let t={},s=e.split(`
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-`)}};Q();import{existsSync as j,mkdirSync as bt,readdirSync as kt,copyFileSync as wt}from"fs";import{join as C,dirname as on}from"path";import{fileURLToPath as an}from"url";var ln=an(import.meta.url),Ct=on(ln);function cn(){let c=[C(Ct,"../../assets/governance"),C(Ct,"../assets/governance")],e=Xe(import.meta.url);e&&(c.push(C(e,"assets/governance")),c.push(C(e,"dist/assets/governance"))),c.push(C(process.cwd(),"node_modules/agentic-qe/assets/governance")),c.push(C(process.cwd(),"assets/governance"));for(let t of c)if(j(t))return t;throw new Error(`Governance assets not found. Package may be corrupted. Searched: ${c.join(", ")}`)}var De=class{projectRoot;overwrite;skipShards;assetsPath;constructor(e){this.projectRoot=e.projectRoot,this.overwrite=e.overwrite??!1,this.skipShards=e.skipShards??!1,this.assetsPath=cn()}async install(){let e=[],t=[],s=[],n=C(this.projectRoot,".claude","guidance"),o=C(n,"shards");try{bt(n,{recursive:!0}),this.skipShards||bt(o,{recursive:!0})}catch(l){return s.push(`Failed to create governance directory: ${P(l)}`),{installed:e,skipped:t,errors:s,governanceDir:n,constitutionInstalled:!1,shardsInstalled:0}}let r=!1,i=C(this.assetsPath,"constitution.md"),d=C(n,"constitution.md");if(j(i))try{!j(d)||this.overwrite?(wt(i,d),e.push("constitution.md"),r=!0):t.push("constitution.md")}catch(l){s.push(`Failed to install constitution.md: ${P(l)}`)}else s.push("constitution.md not found in assets");let m=0;if(!this.skipShards){let l=C(this.assetsPath,"shards");if(j(l))try{let u=kt(l).filter(p=>p.endsWith(".shard.md"));for(let p of u){let y=C(l,p),f=C(o,p);try{!j(f)||this.overwrite?(wt(y,f),e.push(`shards/${p}`),m++):t.push(`shards/${p}`)}catch(k){s.push(`Failed to install ${p}: ${P(k)}`)}}}catch(u){s.push(`Failed to read shards directory: ${P(u)}`)}else s.push("Shards directory not found in assets")}return{installed:e,skipped:t,errors:s,governanceDir:n,constitutionInstalled:r,shardsInstalled:m}}isInstalled(){let e=C(this.projectRoot,".claude","guidance","constitution.md");return j(e)}getInstalledShards(){let e=C(this.projectRoot,".claude","guidance","shards");if(!j(e))return[];try{return kt(e).filter(t=>t.endsWith(".shard.md"))}catch{return[]}}};function Et(c){return new De(c)}var ce=class extends v{name="governance";description="Install governance configuration";order=95;critical=!1;requiresPhases=["configuration"];async shouldRun(e){return e.options.noClaude?(e.services.log("  Governance skipped (--no-claude)"),!1):e.options.noGovernance?(e.services.log("  Governance skipped (--no-governance flag)"),!1):e.options.minimal?(e.services.log("  Governance skipped (minimal mode)"),!1):!0}async run(e){let{projectRoot:t,options:s}=e,n=s.upgrade,o=Et({projectRoot:t,overwrite:n});if(o.isInstalled()&&!n){let i=o.getInstalledShards();return e.services.log(`  Governance already installed (${i.length} shards)`),e.services.log("  Use --upgrade to overwrite existing files"),{filesInstalled:0,filesSkipped:1+i.length,constitutionInstalled:!1,shardsInstalled:0,governanceDir:`${t}/.claude/guidance`,skippedByFlag:!1}}let r=await o.install();if(r.errors.length>0)for(let i of r.errors)e.services.warn(`  ${i}`);return e.services.log(`  Constitution: ${r.constitutionInstalled?"installed":"skipped"}`),e.services.log(`  Shards: ${r.shardsInstalled} installed, ${r.skipped.filter(i=>i.startsWith("shards/")).length} skipped`),r.installed.length>0&&(e.services.log("  Governance enabled (non-strict mode by default)"),e.services.log("  Set GOVERNANCE_STRICT_MODE=true for strict enforcement")),{filesInstalled:r.installed.length,filesSkipped:r.skipped.length,constitutionInstalled:r.constitutionInstalled,shardsInstalled:r.shardsInstalled,governanceDir:r.governanceDir,skippedByFlag:!1}}};var dn=new G,un=new H,mn=new U,pn=new J,gn=new Y,fn=new X,hn=new ee,yn=new te,vn=new oe,bn=new ie,kn=new ae,wn=new le,Cn=new ce;function Pt(){return[dn,un,mn,pn,gn,fn,hn,yn,vn,Cn,bn,kn,wn]}var $e=class{phases;context;constructor(e){this.context=this.createContext(e),this.phases=e.customPhases??Pt()}createContext(e){let t=e.withAllPlatforms;return{projectRoot:e.projectRoot,options:{autoMode:e.autoMode,upgrade:e.upgrade,skipPatterns:e.skipPatterns,skipCodeIndex:e.skipCodeIndex,minimal:e.minimal,browserEngine:e.browserEngine,withN8n:e.withN8n,withOpenCode:e.withOpenCode,withKiro:e.withKiro,withCopilot:e.withCopilot||t,withCursor:e.withCursor||t,withCline:e.withCline||t,withKiloCode:e.withKiloCode||t,withRooCode:e.withRooCode||t,withCodex:e.withCodex||t,withRuflo:e.withRuflo,codexGuidance:e.codexGuidance,withWindsurf:e.withWindsurf||t,withContinueDev:e.withContinueDev||t,withAllPlatforms:e.withAllPlatforms,n8nApiConfig:e.n8nApiConfig,wizardAnswers:e.wizardAnswers,noGovernance:e.noGovernance,noMcp:e.noMcp,withMcp:e.withMcp,noClaude:e.noClaude,noStatusLine:e.noStatusLine,memoryBackend:e.memoryBackend},config:{},enhancements:{claudeFlow:!1,ruvector:!1},results:new Map,services:{log:s=>console.log(s),warn:s=>console.warn(s),error:s=>console.error(s)}}}async initialize(){let e=Date.now(),t=[];try{let s=[...this.phases].sort((n,o)=>n.order-o.order);for(let n of s){if(!await n.shouldRun(this.context))continue;console.log(`
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+`)}};Q();import{existsSync as q,mkdirSync as vt,readdirSync as bt,copyFileSync as wt}from"fs";import{join as C,dirname as on}from"path";import{fileURLToPath as an}from"url";var ln=an(import.meta.url),Ct=on(ln);function cn(){let c=[C(Ct,"../../assets/governance"),C(Ct,"../assets/governance")],e=Xe(import.meta.url);e&&(c.push(C(e,"assets/governance")),c.push(C(e,"dist/assets/governance"))),c.push(C(process.cwd(),"node_modules/agentic-qe/assets/governance")),c.push(C(process.cwd(),"assets/governance"));for(let t of c)if(q(t))return t;throw new Error(`Governance assets not found. Package may be corrupted. Searched: ${c.join(", ")}`)}var De=class{projectRoot;overwrite;skipShards;assetsPath;constructor(e){this.projectRoot=e.projectRoot,this.overwrite=e.overwrite??!1,this.skipShards=e.skipShards??!1,this.assetsPath=cn()}async install(){let e=[],t=[],s=[],n=C(this.projectRoot,".claude","guidance"),o=C(n,"shards");try{vt(n,{recursive:!0}),this.skipShards||vt(o,{recursive:!0})}catch(l){return s.push(`Failed to create governance directory: ${S(l)}`),{installed:e,skipped:t,errors:s,governanceDir:n,constitutionInstalled:!1,shardsInstalled:0}}let r=!1,i=C(this.assetsPath,"constitution.md"),d=C(n,"constitution.md");if(q(i))try{!q(d)||this.overwrite?(wt(i,d),e.push("constitution.md"),r=!0):t.push("constitution.md")}catch(l){s.push(`Failed to install constitution.md: ${S(l)}`)}else s.push("constitution.md not found in assets");let p=0;if(!this.skipShards){let l=C(this.assetsPath,"shards");if(q(l))try{let u=bt(l).filter(m=>m.endsWith(".shard.md"));for(let m of u){let y=C(l,m),g=C(o,m);try{!q(g)||this.overwrite?(wt(y,g),e.push(`shards/${m}`),p++):t.push(`shards/${m}`)}catch(b){s.push(`Failed to install ${m}: ${S(b)}`)}}}catch(u){s.push(`Failed to read shards directory: ${S(u)}`)}else s.push("Shards directory not found in assets")}return{installed:e,skipped:t,errors:s,governanceDir:n,constitutionInstalled:r,shardsInstalled:p}}isInstalled(){let e=C(this.projectRoot,".claude","guidance","constitution.md");return q(e)}getInstalledShards(){let e=C(this.projectRoot,".claude","guidance","shards");if(!q(e))return[];try{return bt(e).filter(t=>t.endsWith(".shard.md"))}catch{return[]}}};function Et(c){return new De(c)}var ce=class extends k{name="governance";description="Install governance configuration";order=95;critical=!1;requiresPhases=["configuration"];async shouldRun(e){return e.options.noClaude?(e.services.log("  Governance skipped (--no-claude)"),!1):e.options.noGovernance?(e.services.log("  Governance skipped (--no-governance flag)"),!1):e.options.minimal?(e.services.log("  Governance skipped (minimal mode)"),!1):!0}async run(e){let{projectRoot:t,options:s}=e,n=s.upgrade,o=Et({projectRoot:t,overwrite:n});if(o.isInstalled()&&!n){let i=o.getInstalledShards();return e.services.log(`  Governance already installed (${i.length} shards)`),e.services.log("  Use --upgrade to overwrite existing files"),{filesInstalled:0,filesSkipped:1+i.length,constitutionInstalled:!1,shardsInstalled:0,governanceDir:`${t}/.claude/guidance`,skippedByFlag:!1}}let r=await o.install();if(r.errors.length>0)for(let i of r.errors)e.services.warn(`  ${i}`);return e.services.log(`  Constitution: ${r.constitutionInstalled?"installed":"skipped"}`),e.services.log(`  Shards: ${r.shardsInstalled} installed, ${r.skipped.filter(i=>i.startsWith("shards/")).length} skipped`),r.installed.length>0&&(e.services.log("  Governance enabled (non-strict mode by default)"),e.services.log("  Set GOVERNANCE_STRICT_MODE=true for strict enforcement")),{filesInstalled:r.installed.length,filesSkipped:r.skipped.length,constitutionInstalled:r.constitutionInstalled,shardsInstalled:r.shardsInstalled,governanceDir:r.governanceDir,skippedByFlag:!1}}};var dn=new H,un=new G,pn=new U,mn=new J,fn=new Y,gn=new X,hn=new ee,yn=new te,kn=new oe,vn=new ie,bn=new ae,wn=new le,Cn=new ce;function St(){return[dn,un,pn,mn,fn,gn,hn,yn,kn,Cn,vn,bn,wn]}var Te=class{phases;context;constructor(e){this.context=this.createContext(e),this.phases=e.customPhases??St()}createContext(e){let t=e.withAllPlatforms;return{projectRoot:e.projectRoot,options:{autoMode:e.autoMode,upgrade:e.upgrade,skipPatterns:e.skipPatterns,skipCodeIndex:e.skipCodeIndex,minimal:e.minimal,browserEngine:e.browserEngine,withN8n:e.withN8n,withOpenCode:e.withOpenCode,withKiro:e.withKiro,withCopilot:e.withCopilot||t,withCursor:e.withCursor||t,withCline:e.withCline||t,withKiloCode:e.withKiloCode||t,withRooCode:e.withRooCode||t,withCodex:e.withCodex||t,withRuflo:e.withRuflo,codexGuidance:e.codexGuidance,withWindsurf:e.withWindsurf||t,withContinueDev:e.withContinueDev||t,withAllPlatforms:e.withAllPlatforms,n8nApiConfig:e.n8nApiConfig,wizardAnswers:e.wizardAnswers,noGovernance:e.noGovernance,noMcp:e.noMcp,withMcp:e.withMcp,noClaude:e.noClaude,noStatusLine:e.noStatusLine,memoryBackend:e.memoryBackend},config:{},enhancements:{claudeFlow:!1,ruvector:!1},results:new Map,services:{log:s=>console.log(s),warn:s=>console.warn(s),error:s=>console.error(s)}}}async initialize(){let e=Date.now(),t=[];try{let s=[...this.phases].sort((n,o)=>n.order-o.order);for(let n of s){if(!await n.shouldRun(this.context))continue;console.log(`
 \u{1F4CB} ${n.description}...`);let r=await n.execute(this.context);if(this.context.results.set(n.name,r),t.push({step:n.description,status:r.success?"success":"error",message:r.message||"",durationMs:r.durationMs}),!r.success&&n.critical){if(console.error(`
-\u274C Critical phase failed: ${n.name}`),n.rollback)try{await n.rollback(this.context)}catch(i){console.error(`Rollback failed: ${i}`)}return this.createFailureResult(t,e)}if(r.skipRemaining)break}return this.createSuccessResult(t,e)}catch(s){return t.push({step:"Initialization Failed",status:"error",message:P(s),durationMs:0}),this.createFailureResult(t,e)}}createSuccessResult(e,t){let s=this.context.config,n=this.context.results.get("learning"),o=this.context.results.get("code-intelligence"),r=this.context.results.get("assets"),i=this.context.results.get("hooks"),d=this.context.results.get("mcp"),m=this.context.results.get("claude-md"),l=this.context.results.get("workers");return{success:!0,config:s||ve("unknown",this.context.projectRoot),steps:e,summary:{projectAnalyzed:this.context.results.has("analysis"),configGenerated:this.context.results.has("configuration"),codeIntelligenceIndexed:o?.data?.entries??0,patternsLoaded:n?.data?.patternsLoaded??0,skillsInstalled:r?.data?.skillsInstalled??0,agentsInstalled:r?.data?.agentsInstalled??0,hooksConfigured:i?.data?.configured??!1,mcpConfigured:d?.data?.configured??!1,claudeMdGenerated:m?.data?.generated??!1,workersStarted:l?.data?.workersConfigured??0,codexGuidance:r?.data?.codexGuidance,codexComponents:r?.data?.codexComponents,retiredAssetsRemoved:r?.data?.retiredAssetsRemoved,retiredAssetsKept:r?.data?.retiredAssetsKept},totalDurationMs:Date.now()-t,timestamp:new Date}}createFailureResult(e,t){return{success:!1,config:ve("unknown",this.context.projectRoot),steps:e,summary:{projectAnalyzed:!1,configGenerated:!1,codeIntelligenceIndexed:0,patternsLoaded:0,skillsInstalled:0,agentsInstalled:0,hooksConfigured:!1,mcpConfigured:!1,claudeMdGenerated:!1,workersStarted:0},totalDurationMs:Date.now()-t,timestamp:new Date}}getPhase(e){return this.phases.find(t=>t.name===e)}getPhases(){return[...this.phases]}getContext(){return this.context}};function En(c){return new $e(c)}async function Qr(c){return await En({projectRoot:c,autoMode:!0}).initialize()}function Wr(c){let e=[];e.push(""),e.push("\u250C\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2510"),e.push("\u2502                    AQE v3 Initialization                     \u2502"),e.push("\u251C\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2524");for(let s of c.steps){let n=s.status==="success"?"\u2713":s.status==="error"?"\u2717":"\u25CB",o=s.step.substring(0,48).padEnd(48);e.push(`\u2502  ${n} ${o} ${String(s.durationMs).padStart(4)}ms \u2502`)}e.push("\u251C\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2524"),e.push(`\u2502  Project: ${c.config.project.name.substring(0,45).padEnd(45)} \u2502`),e.push(`\u2502  Type: ${c.config.project.type.padEnd(48)} \u2502`),e.push(`\u2502  Code Intel: ${String(c.summary.codeIntelligenceIndexed).padEnd(43)} \u2502`),e.push(`\u2502  Patterns: ${String(c.summary.patternsLoaded).padEnd(45)} \u2502`),e.push(`\u2502  Skills: ${String(c.summary.skillsInstalled).padEnd(47)} \u2502`),e.push(`\u2502  Agents: ${String(c.summary.agentsInstalled).padEnd(47)} \u2502`),e.push(`\u2502  Workers: ${String(c.summary.workersStarted).padEnd(46)} \u2502`),e.push(`\u2502  Hooks: ${c.summary.hooksConfigured?"Yes":"No".padEnd(48)} \u2502`),e.push(`\u2502  MCP: ${c.summary.mcpConfigured?"Yes":"No".padEnd(50)} \u2502`),e.push(`\u2502  CLAUDE.md: ${c.summary.claudeMdGenerated?"Yes":"No".padEnd(44)} \u2502`),e.push("\u251C\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2524");let t=c.success?"\u2713 AQE v3 initialized successfully":"\u2717 Initialization failed";return e.push(`\u2502  ${t.padEnd(57)} \u2502`),e.push("\u2514\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2518"),e.push(""),e.join(`
-`)}export{$e as ModularInitOrchestrator,En as createModularInitOrchestrator,Wr as formatInitResultModular,Qr as quickInitModular};
+\u274C Critical phase failed: ${n.name}`),n.rollback)try{await n.rollback(this.context)}catch(i){console.error(`Rollback failed: ${i}`)}return this.createFailureResult(t,e)}if(r.skipRemaining)break}return this.createSuccessResult(t,e)}catch(s){return t.push({step:"Initialization Failed",status:"error",message:S(s),durationMs:0}),this.createFailureResult(t,e)}}createSuccessResult(e,t){let s=this.context.config,n=this.context.results.get("learning"),o=this.context.results.get("code-intelligence"),r=this.context.results.get("assets"),i=this.context.results.get("hooks"),d=this.context.results.get("mcp"),p=this.context.results.get("claude-md"),l=this.context.results.get("workers");return{success:!0,config:s||ke("unknown",this.context.projectRoot),steps:e,summary:{projectAnalyzed:this.context.results.has("analysis"),configGenerated:this.context.results.has("configuration"),codeIntelligenceIndexed:o?.data?.entries??0,patternsLoaded:n?.data?.patternsLoaded??0,skillsInstalled:r?.data?.skillsInstalled??0,agentsInstalled:r?.data?.agentsInstalled??0,hooksConfigured:i?.data?.configured??!1,mcpConfigured:d?.data?.configured??!1,claudeMdGenerated:p?.data?.generated??!1,workersStarted:l?.data?.workersConfigured??0,codexGuidance:r?.data?.codexGuidance,codexComponents:r?.data?.codexComponents,retiredAssetsRemoved:r?.data?.retiredAssetsRemoved,retiredAssetsKept:r?.data?.retiredAssetsKept},totalDurationMs:Date.now()-t,timestamp:new Date}}createFailureResult(e,t){return{success:!1,config:ke("unknown",this.context.projectRoot),steps:e,summary:{projectAnalyzed:!1,configGenerated:!1,codeIntelligenceIndexed:0,patternsLoaded:0,skillsInstalled:0,agentsInstalled:0,hooksConfigured:!1,mcpConfigured:!1,claudeMdGenerated:!1,workersStarted:0},totalDurationMs:Date.now()-t,timestamp:new Date}}getPhase(e){return this.phases.find(t=>t.name===e)}getPhases(){return[...this.phases]}getContext(){return this.context}};function En(c){return new Te(c)}async function Qr(c){return await En({projectRoot:c,autoMode:!0}).initialize()}function Vr(c){let e=[];e.push(""),e.push("\u250C\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2510"),e.push("\u2502                    AQE v3 Initialization                     \u2502"),e.push("\u251C\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2524");for(let s of c.steps){let n=s.status==="success"?"\u2713":s.status==="error"?"\u2717":"\u25CB",o=s.step.substring(0,48).padEnd(48);e.push(`\u2502  ${n} ${o} ${String(s.durationMs).padStart(4)}ms \u2502`)}e.push("\u251C\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2524"),e.push(`\u2502  Project: ${c.config.project.name.substring(0,45).padEnd(45)} \u2502`),e.push(`\u2502  Type: ${c.config.project.type.padEnd(48)} \u2502`),e.push(`\u2502  Code Intel: ${String(c.summary.codeIntelligenceIndexed).padEnd(43)} \u2502`),e.push(`\u2502  Patterns: ${String(c.summary.patternsLoaded).padEnd(45)} \u2502`),e.push(`\u2502  Skills: ${String(c.summary.skillsInstalled).padEnd(47)} \u2502`),e.push(`\u2502  Agents: ${String(c.summary.agentsInstalled).padEnd(47)} \u2502`),e.push(`\u2502  Workers: ${String(c.summary.workersStarted).padEnd(46)} \u2502`),e.push(`\u2502  Hooks: ${c.summary.hooksConfigured?"Yes":"No".padEnd(48)} \u2502`),e.push(`\u2502  MCP: ${c.summary.mcpConfigured?"Yes":"No".padEnd(50)} \u2502`),e.push(`\u2502  CLAUDE.md: ${c.summary.claudeMdGenerated?"Yes":"No".padEnd(44)} \u2502`),e.push("\u251C\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2524");let t=c.success?"\u2713 AQE v3 initialized successfully":"\u2717 Initialization failed";return e.push(`\u2502  ${t.padEnd(57)} \u2502`),e.push("\u2514\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2518"),e.push(""),e.join(`
+`)}export{Te as ModularInitOrchestrator,En as createModularInitOrchestrator,Vr as formatInitResultModular,Qr as quickInitModular};

package/dist/cli/chunks/pattern-null-store-KDVRM7PW.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.14");process.exit(0)}
+import{a}from"./chunk-UMHFTQTR.js";import"./chunk-Z54G2YOL.js";import"./chunk-QP6GL3O5.js";import"./chunk-V6SE2ZU2.js";export{a as PatternNullStore};

package/dist/cli/chunks/{pattern-usage-recorder-LOPNCULT.js → pattern-usage-recorder-TPWPX32U.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.12");process.exit(0)}
-import{a,b}from"./chunk-65TH6RPD.js";import"./chunk-WDEXOLK2.js";export{a as recordPatternUsage,b as recordPatternUsageBatch};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.15.14");process.exit(0)}
+import{a,b}from"./chunk-UNYTHZDZ.js";import"./chunk-V6SE2ZU2.js";export{a as recordPatternUsage,b as recordPatternUsageBatch};