agentic-qe 3.14.4 → 3.14.5

package/.claude/skills/skills-manifest.json

@@ -940,7 +940,7 @@
   },
   "metadata": {
     "generatedBy": "Agentic QE Fleet",
-    "fleetVersion": "3.14.4",
+    "fleetVersion": "3.14.5",
     "manifestVersion": "1.4.0",
     "lastUpdated": "2026-04-13T00:00:00.000Z",
     "contributors": [

package/CHANGELOG.md

@@ -5,6 +5,99 @@ All notable changes to the Agentic QE project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [3.14.5] - 2026-09-29
+
+This patch makes Agentic QE's results trustworthy for scripts and CI: failed
+commands now exit non-zero, `aqe platform setup` works again, and Codex setup
+through a globally installed `aqe` installs its hooks and skills. It also stops
+the audit chain from breaking when several AQE processes share a store or when
+stores are merged, lets the pattern search index bind when an embedder is
+configured, quiets the CLI's internal startup logging, and resolves plugin
+versions with npm SemVer. Ten of the issues fixed here were reported by
+[@pacphi](https://github.com/pacphi), and most of the fixes were contributed by
+[@rudycelekli](https://github.com/rudycelekli).
+
+### Security
+
+- Patched a high-severity undici advisory (GHSA-w293-vg96-wgc3) in the
+  vendored Ruflo skill tree; the published package was not affected ([#774]).
+
+### Changed
+
+- The CLI is much quieter by default. Internal startup diagnostics are filtered
+  by `AQE_LOG_LEVEL` / `LOG_LEVEL` (default `warn`) and always go to stderr, and
+  `aqe memory list|get|search|store|delete|usage` open the project store
+  directly instead of starting the whole fleet, so they no longer print ~99
+  lines of startup logging. A command's own `--verbose` flag still shows its
+  detail ([#763]).
+- Plugin versions and dependency ranges now follow npm SemVer. The newest
+  compatible cached version is selected, `minAqeVersion` and dependency ranges
+  are enforced at install and startup, and a rejected plugin is reported
+  without stopping independent plugins from loading. Noncanonical version
+  strings, `latest` ranges, and invalid `minAqeVersion` values are rejected
+  ([#750]).
+- `aqe task submit` without `--wait` now exits 1 and tells you to use `--wait`
+  or the MCP server. A task submitted from the CLI only ran inside that CLI
+  process and was lost when it exited, so the printed ID could never be looked
+  up ([#769]).
+- `aqe init --auto` in a project with a `.codex/` folder now applies the
+  selected Codex guidance mode (default `full`) to an existing `AGENTS.md`,
+  inside AQE's own marked block ([#767]).
+- `RUVECTOR_USE_*` environment overrides now take effect in the CLI and MCP
+  server. Any value other than `true` switches that feature off ([#768]).
+- Git submodules and worktrees inside a repository now use their own
+  `.agentic-qe` store instead of the parent repository's ([#741]).
+
+### Fixed
+
+- Commands that report failure now exit 1 instead of 0: `platform verify`,
+  `plugin install` / `remove` / `info`, invalid hook provenance, and every
+  command whose automatic initialization fails ([#760], [#770]).
+- `aqe platform setup <platform>` works again for Copilot, Cursor, Cline,
+  Kilo Code, Roo Code, Codex, Windsurf and Continue.dev; it failed for all of
+  them with "Module not found in bundle" ([#761]).
+- `aqe task submit --domain` and MCP `task_submit` reject unknown domains
+  instead of accepting a task nothing will run ([#769]).
+- `aqe init --with-codex` through a globally installed `aqe`, a project-local
+  install, or `npx` now installs the Codex hooks and QE skills, and warns when
+  packaged assets cannot be found ([#765]).
+- `--codex-guidance full` is applied to an existing `AGENTS.md`, the `--json`
+  summary reports the bytes actually written, and switching modes no longer
+  piles `---` separators into your part of the file ([#767]).
+- The audit chain no longer forks when two AQE processes (for example an MCP
+  server and hooks) append at once, so `aqe audit verify --chain audit` stays
+  valid ([#764]).
+- `brain import` no longer copies the source store's audit rows into the
+  target chain; it records one `BRAIN_IMPORT` entry instead, so the target
+  chain still verifies after a merge ([#766], [#771]).
+- With an embedder endpoint configured, the pattern search index (and
+  `brain.rvf`) now binds in every process instead of leaving patterns
+  `COMMITTED_PENDING_INDEX`. The provenance guard still refuses when no
+  embedder or a mismatched one is configured ([#768], [#773]).
+- Running `aqe`, the hook runner or the MCP server from a subfolder no longer
+  creates a separate `.agentic-qe` store there; relative `AQE_MEMORY_PATH` /
+  `AQE_STORAGE_PATH` and MCP session journals resolve from the project root, a
+  stray `~/.agentic-qe` no longer claims non-git folders below your home
+  directory, and `status` / `health` exit 1 when they refuse to run
+  ([#741], [#772]).
+
+[#750]: https://github.com/proffesor-for-testing/agentic-qe/pull/750
+[#763]: https://github.com/proffesor-for-testing/agentic-qe/pull/763
+[#774]: https://github.com/proffesor-for-testing/agentic-qe/pull/774
+[#741]: https://github.com/proffesor-for-testing/agentic-qe/pull/741
+[#760]: https://github.com/proffesor-for-testing/agentic-qe/pull/760
+[#761]: https://github.com/proffesor-for-testing/agentic-qe/pull/761
+[#764]: https://github.com/proffesor-for-testing/agentic-qe/pull/764
+[#765]: https://github.com/proffesor-for-testing/agentic-qe/pull/765
+[#766]: https://github.com/proffesor-for-testing/agentic-qe/pull/766
+[#767]: https://github.com/proffesor-for-testing/agentic-qe/pull/767
+[#768]: https://github.com/proffesor-for-testing/agentic-qe/pull/768
+[#769]: https://github.com/proffesor-for-testing/agentic-qe/pull/769
+[#770]: https://github.com/proffesor-for-testing/agentic-qe/pull/770
+[#771]: https://github.com/proffesor-for-testing/agentic-qe/pull/771
+[#772]: https://github.com/proffesor-for-testing/agentic-qe/pull/772
+[#773]: https://github.com/proffesor-for-testing/agentic-qe/pull/773
+
 ## [3.14.4] - 2026-09-27
 
 This patch moves Agentic QE to the current AI model generation and fixes live

package/assets/skills/skills-manifest.json

@@ -940,7 +940,7 @@
   },
   "metadata": {
     "generatedBy": "Agentic QE Fleet",
-    "fleetVersion": "3.14.4",
+    "fleetVersion": "3.14.5",
     "manifestVersion": "1.4.0",
     "lastUpdated": "2026-04-13T00:00:00.000Z",
     "contributors": [

package/dist/audit/witness-chain.d.ts

@@ -7,7 +7,7 @@
  */
 import { type Database as DatabaseType } from 'better-sqlite3';
 import { type WitnessKeyManager } from './witness-key-manager.js';
-export type WitnessActionType = 'PATTERN_CREATE' | 'PATTERN_UPDATE' | 'PATTERN_PROMOTE' | 'PATTERN_QUARANTINE' | 'DREAM_MERGE' | 'DREAM_DISCARD' | 'QUALITY_GATE_PASS' | 'QUALITY_GATE_FAIL' | 'ROUTING_DECISION' | 'FINDING_DELIVERED' | 'FINDING_BLOCKED' | 'BRANCH_MERGE' | 'BRANCH_DISCARD' | 'HEBBIAN_PENALTY' | 'KEY_ROTATION';
+export type WitnessActionType = 'PATTERN_CREATE' | 'PATTERN_UPDATE' | 'PATTERN_PROMOTE' | 'PATTERN_QUARANTINE' | 'DREAM_MERGE' | 'DREAM_DISCARD' | 'QUALITY_GATE_PASS' | 'QUALITY_GATE_FAIL' | 'ROUTING_DECISION' | 'FINDING_DELIVERED' | 'FINDING_BLOCKED' | 'BRANCH_MERGE' | 'BRANCH_DISCARD' | 'HEBBIAN_PENALTY' | 'KEY_ROTATION' | 'BRAIN_IMPORT';
 export interface WitnessEntry {
     id: number;
     prev_hash: string;

package/dist/audit/witness-chain.js

@@ -102,32 +102,39 @@ export class WitnessChain {
     }
     /** Append a new SHAKE-256-hashed entry, optionally Ed25519-signed. */
     append(actionType, actionData, actor) {
-        if (!this.db)
+        const db = this.db;
+        if (!db)
             throw new Error('WitnessChain not initialized');
-        const timestamp = new Date().toISOString();
         const actionDataStr = JSON.stringify(actionData);
         const algo = 'shake256';
         const actionHash = shake256(actionDataStr);
-        const lastEntry = this.db
-            .prepare('SELECT * FROM witness_chain ORDER BY id DESC LIMIT 1')
-            .get();
-        const prevHash = lastEntry ? hashWith(algo, serializeEntry(lastEntry)) : GENESIS_PREV_HASH;
-        let signature = null;
-        let signerKeyId = null;
-        if (this.keyManager) {
-            const sigData = Buffer.from(prevHash + actionHash + actionType + timestamp + actor, 'utf-8');
-            const result = this.keyManager.sign(sigData);
-            signature = result.signature.toString('hex');
-            signerKeyId = result.keyId;
-        }
-        const ins = this.db.prepare(`INSERT INTO witness_chain
-       (prev_hash, action_hash, action_type, action_data, timestamp, actor, hash_algo, signature, signer_key_id)
-       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`).run(prevHash, actionHash, actionType, actionDataStr, timestamp, actor, algo, signature, signerKeyId);
-        return {
-            id: ins.lastInsertRowid, prev_hash: prevHash, action_hash: actionHash,
-            action_type: actionType, action_data: actionDataStr, timestamp, actor,
-            hash_algo: algo, signature, signer_key_id: signerKeyId,
-        };
+        // BEGIN IMMEDIATE acquires the write lock before reading the tail. Without
+        // it, two AQE processes can both hash the same predecessor and fork the
+        // audit chain despite SQLite serializing their eventual INSERTs.
+        const appendEntry = db.transaction(() => {
+            const timestamp = new Date().toISOString();
+            const lastEntry = db
+                .prepare('SELECT * FROM witness_chain ORDER BY id DESC LIMIT 1')
+                .get();
+            const prevHash = lastEntry ? hashWith(algo, serializeEntry(lastEntry)) : GENESIS_PREV_HASH;
+            let signature = null;
+            let signerKeyId = null;
+            if (this.keyManager) {
+                const sigData = Buffer.from(prevHash + actionHash + actionType + timestamp + actor, 'utf-8');
+                const result = this.keyManager.sign(sigData);
+                signature = result.signature.toString('hex');
+                signerKeyId = result.keyId;
+            }
+            const ins = db.prepare(`INSERT INTO witness_chain
+         (prev_hash, action_hash, action_type, action_data, timestamp, actor, hash_algo, signature, signer_key_id)
+         VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`).run(prevHash, actionHash, actionType, actionDataStr, timestamp, actor, algo, signature, signerKeyId);
+            return {
+                id: ins.lastInsertRowid, prev_hash: prevHash, action_hash: actionHash,
+                action_type: actionType, action_data: actionDataStr, timestamp, actor,
+                hash_algo: algo, signature, signer_key_id: signerKeyId,
+            };
+        });
+        return appendEntry.immediate();
     }
     /**
      * Find the entry with the given id, checking the live table first and then

package/dist/cli/bundle.js

@@ -1,13 +1,16 @@
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-Error: AQE system not initialized in this directory.`)),console.log(m.yellow("Run `aqe init` first to set up this project.\n")),!1)}async function c(){if(t.initialized&&t.kernel&&t.queen)return!0;process.stderr.write(m.gray("Auto-initializing v3 system...")+`
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+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
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+  AQE_LOG_LEVEL   Internal log level: debug | info | warn | error | silent (default: warn)
+  LOG_LEVEL       Same as AQE_LOG_LEVEL; AQE_LOG_LEVEL takes precedence
+  AQE_VERBOSE=1   Shorthand for info-level logging (full system-init output)
+Diagnostics are written to stderr; stdout carries command output only.`);r.hook("preAction",(e,a)=>{w(a.opts())});d(r,"init","Initialize the AQE v3 system",()=>import("./chunks/init-handler-5UIVOM7K.js").then(e=>e.createInitHandler(o)),t);d(r,"status","Show system status",()=>import("./chunks/status-handler-CPFTN4XL.js").then(e=>e.createStatusHandler(o,P)),t);d(r,"health","Check system health",()=>import("./chunks/status-handler-CPFTN4XL.js").then(e=>e.createHealthHandler(o,P)),t);d(r,"task","Manage QE tasks",()=>import("./chunks/task-handler-7H5OYJG4.js").then(e=>e.createTaskHandler(o,s)),t);d(r,"agent","Manage QE agents",()=>import("./chunks/agent-handler-V6CZ7Q6S.js").then(e=>e.createAgentHandler(o,s)),t);d(r,"domain","Domain operations",()=>import("./chunks/domain-handler-LBC3GJ7Z.js").then(e=>e.createDomainHandler(o,s)),t);d(r,"protocol","Execute coordination 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-Shutting down...`)),console.log(m.green(`Shutdown complete
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+Shutting down...`)),console.log(l.green(`Shutdown complete
+`)),await o(0)});process.on("SIGTERM",async()=>{console.log(l.yellow(`
+Received SIGTERM, shutting down gracefully...`)),await o(0)});async function M(){let{isVersionFastPath:e}=await import("./chunks/fast-paths-2KLDUWCY.js");e(process.argv)&&(console.log(I),process.exit(0)),y();let a=process.argv.slice(2).filter(i=>i!=="--");if(!(a[0]==="learning"&&(a[1]==="backup"||a[1]==="restore"))){let{bootstrapTokenTracking:i}=await import("./chunks/token-bootstrap-SSDCYEKK.js");await i({enableOptimization:!0,enablePersistence:!0,verbose:process.env.AQE_VERBOSE==="true"})}await r.parseAsync(),!v()&&await o(process.exitCode??0)}M().catch(async e=>{console.error(l.red("Fatal error:"),e),await o(1)});

package/dist/cli/chunks/adapter-IYC62SXA.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
+import{a,b,c}from"./chunk-UKGXWW64.js";import"./chunk-I2NENQ44.js";import"./chunk-DLF5BOJD.js";import"./chunk-IJHCIXJC.js";import"./chunk-J5UNP6W3.js";import"./chunk-JSZ663MU.js";export{a as AgentBoosterAdapter,b as createAgentBoosterAdapter,c as createAgentBoosterAdapterSync};

package/dist/cli/chunks/{agent-booster-wasm-5PC7D2FW.js → agent-booster-wasm-EDNKP3SP.js}

@@ -1,2 +1,2 @@
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-import{a as x}from"./chunk-NA7B2QYB.js";import{c as f}from"./chunk-Y3MW3YBC.js";import"./chunk-TT23RRB7.js";x();import{createRequire as w}from"module";var S=f.create("agent-booster-wasm"),t={JavaScript:0,TypeScript:1,Python:2,Rust:3,Go:4,Java:5,C:6,Cpp:7},l={ExactReplace:0,FuzzyReplace:1,InsertAfter:2,InsertBefore:3,Append:4},v={0:"JavaScript",1:"TypeScript",2:"Python",3:"Rust",4:"Go",5:"Java",6:"C",7:"Cpp"},a=null,u=null,p=null;async function g(){if(a)return!0;if(p)return!1;try{if(a=w(import.meta.url)("./agent_booster_wasm.js"),!a)throw new Error("WASM module loaded but is null");return u=new a.AgentBoosterWasm,!0}catch(e){return p=e,console.warn("[AgentBoosterWASM] Failed to load WASM module:",e),!1}}function A(e){return{".js":t.JavaScript,".mjs":t.JavaScript,".cjs":t.JavaScript,".jsx":t.JavaScript,".ts":t.TypeScript,".tsx":t.TypeScript,".mts":t.TypeScript,".cts":t.TypeScript,".py":t.Python,".rs":t.Rust,".go":t.Go,".java":t.Java,".c":t.C,".h":t.C,".cpp":t.Cpp,".cc":t.Cpp,".cxx":t.Cpp,".hpp":t.Cpp}[e.toLowerCase()]??t.JavaScript}var M=[{name:"var-to-const",detect:(e,r)=>e.includes("var ")&&r.includes("const "),apply:(e,r)=>e.replace(/\bvar\s+/g,"const ")},{name:"var-to-let",detect:(e,r)=>e.includes("var ")&&r.includes("let "),apply:(e,r)=>e.replace(/\bvar\s+/g,"let ")},{name:"add-types-function",detect:(e,r)=>e.includes("function")&&!e.includes(":")&&r.includes(":"),apply:(e,r)=>r},{name:"async-wrapper",detect:(e,r)=>!e.includes("async")&&r.includes("async")&&r.includes("await"),apply:(e,r)=>r},{name:"try-catch-wrapper",detect:(e,r)=>!e.includes("try {")&&r.includes("try {"),apply:(e,r)=>r},{name:"null-check",detect:(e,r)=>!e.includes("if (!")&&!e.includes("if (!")&&(r.includes("if (!")||r.includes("?.")),apply:(e,r)=>r},{name:"test-assertion",detect:(e,r)=>e.includes("test(")&&!e.includes("expect(")&&r.includes("expect("),apply:(e,r)=>r}];function y(e,r){for(let n of M)if(n.detect(e,r))try{return{success:!0,code:n.apply(e,r),pattern:n.name}}catch(s){S.debug("Pattern transform failed, trying next",{pattern:n.name,error:s instanceof Error?s.message:String(s)});continue}return{success:!1,code:r}}async function b(e,r,n,s={}){let o=performance.now(),{confidenceThreshold:T=.5,allowFallback:d=!0}=s;if(!e.trim())return{success:!0,mergedCode:r,confidence:1,strategy:l.Append,syntaxValid:!0,source:"fallback",latencyMs:performance.now()-o};if(await g()&&u&&a)try{let c=a.WasmLanguage[v[n]],i=u.apply_edit(e,r,c);return{success:!0,mergedCode:i.merged_code,confidence:i.confidence,strategy:i.strategy,syntaxValid:i.syntax_valid,source:"wasm",latencyMs:performance.now()-o}}catch(c){let i=c;if(d){let m=y(e,r);if(m.success)return{success:!0,mergedCode:m.code,confidence:.7,strategy:l.FuzzyReplace,syntaxValid:!0,source:"pattern",latencyMs:performance.now()-o}}return{success:!1,mergedCode:r,confidence:0,strategy:l.Append,syntaxValid:!1,source:"fallback",latencyMs:performance.now()-o,error:i.message}}if(d){let c=y(e,r);return{success:c.success,mergedCode:c.code,confidence:c.success?.7:0,strategy:l.FuzzyReplace,syntaxValid:!0,source:"pattern",latencyMs:performance.now()-o}}return{success:!1,mergedCode:r,confidence:0,strategy:l.Append,syntaxValid:!1,source:"fallback",latencyMs:performance.now()-o,error:p?.message??"WASM not available"}}async function W(e,r={}){return Promise.all(e.map(({original:n,edit:s,language:o})=>b(n,s,o,r)))}async function C(){return g()}async function L(){return await g()&&a?a.AgentBoosterWasm.version():"unavailable"}async function R(){if(await g(),u&&a)try{u.apply_edit("function x() {}","function x() {}",a.WasmLanguage.JavaScript)}catch(e){console.debug("[AgentBoosterWASM] Warmup error:",e instanceof Error?e.message:e)}}var _={transform:b,batchTransform:W,isWasmAvailable:C,getVersion:L,warmup:R,Language:t,MergeStrategy:l,languageFromExtension:A};export{t as Language,l as MergeStrategy,W as batchTransform,_ as default,L as getVersion,C as isWasmAvailable,A as languageFromExtension,b as transform,R as warmup};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
+import{a as x}from"./chunk-J27F4NSB.js";import{c as f}from"./chunk-7CD7PBHY.js";import"./chunk-JSZ663MU.js";x();import{createRequire as w}from"module";var S=f.create("agent-booster-wasm"),t={JavaScript:0,TypeScript:1,Python:2,Rust:3,Go:4,Java:5,C:6,Cpp:7},l={ExactReplace:0,FuzzyReplace:1,InsertAfter:2,InsertBefore:3,Append:4},v={0:"JavaScript",1:"TypeScript",2:"Python",3:"Rust",4:"Go",5:"Java",6:"C",7:"Cpp"},a=null,u=null,p=null;async function g(){if(a)return!0;if(p)return!1;try{if(a=w(import.meta.url)("./agent_booster_wasm.js"),!a)throw new Error("WASM module loaded but is null");return u=new a.AgentBoosterWasm,!0}catch(e){return p=e,console.warn("[AgentBoosterWASM] Failed to load WASM module:",e),!1}}function A(e){return{".js":t.JavaScript,".mjs":t.JavaScript,".cjs":t.JavaScript,".jsx":t.JavaScript,".ts":t.TypeScript,".tsx":t.TypeScript,".mts":t.TypeScript,".cts":t.TypeScript,".py":t.Python,".rs":t.Rust,".go":t.Go,".java":t.Java,".c":t.C,".h":t.C,".cpp":t.Cpp,".cc":t.Cpp,".cxx":t.Cpp,".hpp":t.Cpp}[e.toLowerCase()]??t.JavaScript}var M=[{name:"var-to-const",detect:(e,r)=>e.includes("var ")&&r.includes("const "),apply:(e,r)=>e.replace(/\bvar\s+/g,"const ")},{name:"var-to-let",detect:(e,r)=>e.includes("var ")&&r.includes("let "),apply:(e,r)=>e.replace(/\bvar\s+/g,"let ")},{name:"add-types-function",detect:(e,r)=>e.includes("function")&&!e.includes(":")&&r.includes(":"),apply:(e,r)=>r},{name:"async-wrapper",detect:(e,r)=>!e.includes("async")&&r.includes("async")&&r.includes("await"),apply:(e,r)=>r},{name:"try-catch-wrapper",detect:(e,r)=>!e.includes("try {")&&r.includes("try {"),apply:(e,r)=>r},{name:"null-check",detect:(e,r)=>!e.includes("if (!")&&!e.includes("if (!")&&(r.includes("if (!")||r.includes("?.")),apply:(e,r)=>r},{name:"test-assertion",detect:(e,r)=>e.includes("test(")&&!e.includes("expect(")&&r.includes("expect("),apply:(e,r)=>r}];function y(e,r){for(let n of M)if(n.detect(e,r))try{return{success:!0,code:n.apply(e,r),pattern:n.name}}catch(s){S.debug("Pattern transform failed, trying next",{pattern:n.name,error:s instanceof Error?s.message:String(s)});continue}return{success:!1,code:r}}async function b(e,r,n,s={}){let o=performance.now(),{confidenceThreshold:T=.5,allowFallback:d=!0}=s;if(!e.trim())return{success:!0,mergedCode:r,confidence:1,strategy:l.Append,syntaxValid:!0,source:"fallback",latencyMs:performance.now()-o};if(await g()&&u&&a)try{let c=a.WasmLanguage[v[n]],i=u.apply_edit(e,r,c);return{success:!0,mergedCode:i.merged_code,confidence:i.confidence,strategy:i.strategy,syntaxValid:i.syntax_valid,source:"wasm",latencyMs:performance.now()-o}}catch(c){let i=c;if(d){let m=y(e,r);if(m.success)return{success:!0,mergedCode:m.code,confidence:.7,strategy:l.FuzzyReplace,syntaxValid:!0,source:"pattern",latencyMs:performance.now()-o}}return{success:!1,mergedCode:r,confidence:0,strategy:l.Append,syntaxValid:!1,source:"fallback",latencyMs:performance.now()-o,error:i.message}}if(d){let c=y(e,r);return{success:c.success,mergedCode:c.code,confidence:c.success?.7:0,strategy:l.FuzzyReplace,syntaxValid:!0,source:"pattern",latencyMs:performance.now()-o}}return{success:!1,mergedCode:r,confidence:0,strategy:l.Append,syntaxValid:!1,source:"fallback",latencyMs:performance.now()-o,error:p?.message??"WASM not available"}}async function W(e,r={}){return Promise.all(e.map(({original:n,edit:s,language:o})=>b(n,s,o,r)))}async function C(){return g()}async function L(){return await g()&&a?a.AgentBoosterWasm.version():"unavailable"}async function R(){if(await g(),u&&a)try{u.apply_edit("function x() {}","function x() {}",a.WasmLanguage.JavaScript)}catch(e){console.debug("[AgentBoosterWASM] Warmup error:",e instanceof Error?e.message:e)}}var _={transform:b,batchTransform:W,isWasmAvailable:C,getVersion:L,warmup:R,Language:t,MergeStrategy:l,languageFromExtension:A};export{t as Language,l as MergeStrategy,W as batchTransform,_ as default,L as getVersion,C as isWasmAvailable,A as languageFromExtension,b as transform,R as warmup};

package/dist/cli/chunks/{agent-handler-RDNTK4CA.js → agent-handler-V6CZ7Q6S.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.4");process.exit(0)}
-import{b as p}from"./chunk-DPFRKBOG.js";import{a as g}from"./chunk-3X3DJZJJ.js";import"./chunk-DHJPWQBR.js";import"./chunk-TT23RRB7.js";import s from"chalk";var l=class{name="agent";description="Manage QE agents";cleanupAndExit;ensureInitialized;constructor(n,t){this.cleanupAndExit=n,this.ensureInitialized=t}register(n,t){let a=n.command("agent").description(this.description);a.command("list").description("List all agents").option("-d, --domain <domain>","Filter by domain").option("-s, --status <status>","Filter by status").action(async e=>{await this.executeList(e,t)}),a.command("spawn <domain>").description("Spawn an agent in a domain").option("-t, --type <type>","Agent type","worker").option("-c, --capabilities <caps>","Comma-separated capabilities","general").option("--no-progress","Disable progress indicator").action(async(e,o)=>{await this.executeSpawn(e,o,t)})}async executeList(n,t){if(await this.ensureInitialized())try{let a=n.domain?t.queen.getAgentsByDomain(n.domain):t.queen.listAllAgents();if(n.status&&(a=a.filter(e=>e.status===n.status)),console.log(s.blue(`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
+import{b as p}from"./chunk-URVHZPWY.js";import{a as g}from"./chunk-R74ZKREV.js";import"./chunk-IJHCIXJC.js";import"./chunk-JSZ663MU.js";import s from"chalk";var l=class{name="agent";description="Manage QE agents";cleanupAndExit;ensureInitialized;constructor(n,t){this.cleanupAndExit=n,this.ensureInitialized=t}register(n,t){let a=n.command("agent").description(this.description);a.command("list").description("List all agents").option("-d, --domain <domain>","Filter by domain").option("-s, --status <status>","Filter by status").action(async e=>{await this.executeList(e,t)}),a.command("spawn <domain>").description("Spawn an agent in a domain").option("-t, --type <type>","Agent type","worker").option("-c, --capabilities <caps>","Comma-separated capabilities","general").option("--no-progress","Disable progress indicator").action(async(e,o)=>{await this.executeSpawn(e,o,t)})}async executeList(n,t){if(await this.ensureInitialized())try{let a=n.domain?t.queen.getAgentsByDomain(n.domain):t.queen.listAllAgents();if(n.status&&(a=a.filter(e=>e.status===n.status)),console.log(s.blue(`
   Agents (${a.length})
 `)),a.length===0)console.log(s.gray("  No agents found"));else{let e=new Map;for(let i of a)e.has(i.domain)||e.set(i.domain,[]),e.get(i.domain).push(i);let o=Array.from(e.entries());for(let[i,m]of o){console.log(s.cyan(`  ${i}:`));for(let r of m)console.log(`    ${r.id}`),console.log(`      Type: ${r.type}`),console.log(`      Status: ${g(r.status)}`),r.startedAt&&console.log(s.gray(`      Started: ${r.startedAt.toISOString()}`));console.log("")}}}catch(a){console.error(s.red(`
   Failed to list agents:`),a),await this.cleanupAndExit(1)}}async executeSpawn(n,t,a){if(await this.ensureInitialized())try{let e=t.capabilities.split(",");console.log(s.blue(`

package/dist/cli/chunks/{agent-memory-branch-NAAMBWIR.js → agent-memory-branch-ZMD6ULC3.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.4");process.exit(0)}
-import"./chunk-TT23RRB7.js";import{existsSync as i,mkdirSync as d,unlinkSync as s,readdirSync as p,statSync as f}from"fs";import{join as o,basename as l}from"path";var v={branchDir:".agentic-qe/branches",defaultStrategy:"child-wins",orphanMaxAgeMs:36e5},g=class{config;parentAdapter;activeBranches=new Map;witnessChain=null;constructor(t,e){this.parentAdapter=t,this.config={...v,...e}}setWitnessChain(t){this.witnessChain=t}createBranch(t){if(this.activeBranches.has(t))throw new Error(`Branch already exists for agent ${t}`);i(this.config.branchDir)||d(this.config.branchDir,{recursive:!0});let e=o(this.config.branchDir,`${t}.rvf`),r=this.parentAdapter.path(),n=this.parentAdapter.derive(e),a={agentId:t,childPath:e,parentPath:r,childAdapter:n,createdAt:Date.now(),ingestLog:[]};return this.activeBranches.set(t,a),a}recordIngest(t,e){let r=this.activeBranches.get(t);if(r)for(let n of e)r.ingestLog.push({id:n.id,vector:n.vector})}async mergeBranch(t,e){let r=e??this.config.defaultStrategy,n=performance.now(),a=0;if(r==="child-wins"&&t.ingestLog.length>0)try{a=this.parentAdapter.ingest(t.ingestLog).accepted}catch(c){console.warn(`[AgentMemoryBranch] Merge replay failed for ${t.agentId}:`,c)}return this.witnessChain?.append("BRANCH_MERGE",{agentId:t.agentId,strategy:r,vectorsMerged:a,branchPath:t.childPath},`agent-${t.agentId}`),this.cleanupBranchFile(t),this.activeBranches.delete(t.agentId),{vectorsMerged:a,strategy:r,durationMs:performance.now()-n}}discardBranch(t){this.witnessChain?.append("BRANCH_DISCARD",{agentId:t.agentId,action:"discard",branchPath:t.childPath},`agent-${t.agentId}`),this.cleanupBranchFile(t),this.activeBranches.delete(t.agentId)}getBranch(t){return this.activeBranches.get(t)}getActiveBranches(){return Array.from(this.activeBranches.values())}listBranchFiles(){return i(this.config.branchDir)?p(this.config.branchDir).filter(e=>e.endsWith(".rvf")).map(e=>{let r=o(this.config.branchDir,e),n=f(r);return{agentId:l(e,".rvf"),path:r,sizeBytes:n.size,modifiedAt:n.mtime}}):[]}cleanupOrphans(t){let e=t??this.config.orphanMaxAgeMs,r=Date.now(),n=0;for(let a of this.listBranchFiles())if(r-a.modifiedAt.getTime()>e&&!this.activeBranches.has(a.agentId))try{s(a.path);let h=`${a.path}.idmap.json`;i(h)&&s(h),n++}catch{}return n}cleanupBranchFile(t){try{t.childAdapter.close()}catch{}try{i(t.childPath)&&s(t.childPath);let e=`${t.childPath}.idmap.json`;i(e)&&s(e)}catch{}}};export{g as AgentMemoryBranch};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
+import"./chunk-JSZ663MU.js";import{existsSync as i,mkdirSync as d,unlinkSync as s,readdirSync as p,statSync as f}from"fs";import{join as o,basename as l}from"path";var v={branchDir:".agentic-qe/branches",defaultStrategy:"child-wins",orphanMaxAgeMs:36e5},g=class{config;parentAdapter;activeBranches=new Map;witnessChain=null;constructor(t,e){this.parentAdapter=t,this.config={...v,...e}}setWitnessChain(t){this.witnessChain=t}createBranch(t){if(this.activeBranches.has(t))throw new Error(`Branch already exists for agent ${t}`);i(this.config.branchDir)||d(this.config.branchDir,{recursive:!0});let e=o(this.config.branchDir,`${t}.rvf`),r=this.parentAdapter.path(),n=this.parentAdapter.derive(e),a={agentId:t,childPath:e,parentPath:r,childAdapter:n,createdAt:Date.now(),ingestLog:[]};return this.activeBranches.set(t,a),a}recordIngest(t,e){let r=this.activeBranches.get(t);if(r)for(let n of e)r.ingestLog.push({id:n.id,vector:n.vector})}async mergeBranch(t,e){let r=e??this.config.defaultStrategy,n=performance.now(),a=0;if(r==="child-wins"&&t.ingestLog.length>0)try{a=this.parentAdapter.ingest(t.ingestLog).accepted}catch(c){console.warn(`[AgentMemoryBranch] Merge replay failed for ${t.agentId}:`,c)}return this.witnessChain?.append("BRANCH_MERGE",{agentId:t.agentId,strategy:r,vectorsMerged:a,branchPath:t.childPath},`agent-${t.agentId}`),this.cleanupBranchFile(t),this.activeBranches.delete(t.agentId),{vectorsMerged:a,strategy:r,durationMs:performance.now()-n}}discardBranch(t){this.witnessChain?.append("BRANCH_DISCARD",{agentId:t.agentId,action:"discard",branchPath:t.childPath},`agent-${t.agentId}`),this.cleanupBranchFile(t),this.activeBranches.delete(t.agentId)}getBranch(t){return this.activeBranches.get(t)}getActiveBranches(){return Array.from(this.activeBranches.values())}listBranchFiles(){return i(this.config.branchDir)?p(this.config.branchDir).filter(e=>e.endsWith(".rvf")).map(e=>{let r=o(this.config.branchDir,e),n=f(r);return{agentId:l(e,".rvf"),path:r,sizeBytes:n.size,modifiedAt:n.mtime}}):[]}cleanupOrphans(t){let e=t??this.config.orphanMaxAgeMs,r=Date.now(),n=0;for(let a of this.listBranchFiles())if(r-a.modifiedAt.getTime()>e&&!this.activeBranches.has(a.agentId))try{s(a.path);let h=`${a.path}.idmap.json`;i(h)&&s(h),n++}catch{}return n}cleanupBranchFile(t){try{t.childAdapter.close()}catch{}try{i(t.childPath)&&s(t.childPath);let e=`${t.childPath}.idmap.json`;i(e)&&s(e)}catch{}}};export{g as AgentMemoryBranch};

package/dist/cli/chunks/aqe-learning-engine-LLOU2IXD.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
+import{a,b,c,d,e,f}from"./chunk-ZCWERUYB.js";import"./chunk-UDHVCKGA.js";import"./chunk-UJWAWIRV.js";import"./chunk-MI5Q55DG.js";import"./chunk-RP2ZKPYV.js";import"./chunk-6LKDHEBY.js";import"./chunk-5WOSWNDN.js";import"./chunk-BJPL6THQ.js";import"./chunk-WJTSY5MC.js";import"./chunk-BYG36QC5.js";import"./chunk-ZBABIZ2D.js";import"./chunk-SX4JLSLV.js";import"./chunk-HBCGYMQU.js";import"./chunk-6CR4VQBQ.js";import"./chunk-7X7JYWT4.js";import"./chunk-RD6TEZ64.js";import"./chunk-UTBYJ4RF.js";import"./chunk-KIP6WZGV.js";import"./chunk-EFV4ADMO.js";import"./chunk-RKOUXVZZ.js";import"./chunk-IJHCIXJC.js";import"./chunk-NQI7FWCS.js";import"./chunk-C3HQL6S4.js";import"./chunk-QWUXCG2L.js";import"./chunk-XEZIIQYJ.js";import"./chunk-J27F4NSB.js";import"./chunk-7CD7PBHY.js";import"./chunk-J5UNP6W3.js";import"./chunk-W2XCZU62.js";import"./chunk-HVU64GP5.js";import"./chunk-ELBZON4V.js";import"./chunk-52L77RMG.js";import"./chunk-XZSMZHM2.js";import"./chunk-CVMNJSCB.js";import"./chunk-NU7UTXMP.js";import"./chunk-D6OUCB2H.js";import"./chunk-6A44AOGN.js";import"./chunk-WJHWH5D2.js";import"./chunk-JSZ663MU.js";export{b as AQELearningEngine,a as DEFAULT_ENGINE_CONFIG,c as DEFAULT_META_LEARNING_CONFIG,d as MetaLearningEngine,e as createAQELearningEngine,f as createDefaultLearningEngine};

package/dist/cli/chunks/{arena-HXTWJ5YY.js → arena-4UPAEHFT.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.4");process.exit(0)}
-import{a as c,c as f}from"./chunk-G6T45OIC.js";import"./chunk-TT23RRB7.js";f();import{Command as $}from"commander";import r from"chalk";function x(v,g,p){let m=new $("arena").description("Competitive test-strategy tournaments (ADR-104)").addHelpText("after",`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
+import{a as c,c as f}from"./chunk-J5UNP6W3.js";import"./chunk-JSZ663MU.js";f();import{Command as $}from"commander";import r from"chalk";function x(v,g,p){let m=new $("arena").description("Competitive test-strategy tournaments (ADR-104)").addHelpText("after",`
 Examples:
   # Run a 4-strategy tournament against the demo fixture (reproducible under --seed)
   aqe arena run --strategies 4 --target fixtures/arena-demo --seed 42
@@ -9,10 +9,10 @@ Examples:
 
   # List persisted runs
   aqe arena list
-`);return m.command("run").description("Run a seeded strategy tournament against an arena fixture").requiredOption("--target <dir>","Arena fixture directory (src/*.mjs + tests/*.test.mjs)").option("--strategies <n>","Number of strategies","4").option("--seed <n>","RNG seed (same seed = same tournament)","42").option("--max-mutants <n>","Mutant sample cap","24").option("--evolve <steps>","Hill-climb steps from the winner","0").option("--json","Output the full arena-result@1 envelope as JSON").action(async a=>{try{let{runArena:i}=await import("./arena-KXFHRWX4.js"),t=i({target:a.target,strategies:parseInt(a.strategies,10),seed:parseInt(a.seed,10),maxMutants:parseInt(a.maxMutants,10),evolveSteps:parseInt(a.evolve,10),log:a.json?()=>{}:e=>console.error(r.dim(`  ${e}`))});try{let{getUnifiedMemory:e}=await import("./unified-memory-CXHLHB5I.js"),s=e();s.isInitialized()||await s.initialize(),s.getDatabase().prepare("INSERT OR REPLACE INTO kv_store (namespace, key, value) VALUES ('arena', ?, ?)").run(`run:${t.seed}:${t.target}`,JSON.stringify(t))}catch(e){console.error(r.dim(`  note: run not persisted (${c(e)})`))}if(a.json){console.log(JSON.stringify(t,null,2));return}let d=new Map(t.strategies.map(e=>[e.id,e]));console.log(r.blue(`
+`);return m.command("run").description("Run a seeded strategy tournament against an arena fixture").requiredOption("--target <dir>","Arena fixture directory (src/*.mjs + tests/*.test.mjs)").option("--strategies <n>","Number of strategies","4").option("--seed <n>","RNG seed (same seed = same tournament)","42").option("--max-mutants <n>","Mutant sample cap","24").option("--evolve <steps>","Hill-climb steps from the winner","0").option("--json","Output the full arena-result@1 envelope as JSON").action(async a=>{try{let{runArena:i}=await import("./arena-QLSBESC7.js"),t=i({target:a.target,strategies:parseInt(a.strategies,10),seed:parseInt(a.seed,10),maxMutants:parseInt(a.maxMutants,10),evolveSteps:parseInt(a.evolve,10),log:a.json?()=>{}:e=>console.error(r.dim(`  ${e}`))});try{let{getUnifiedMemory:e}=await import("./unified-memory-DDWMC435.js"),s=e();s.isInitialized()||await s.initialize(),s.getDatabase().prepare("INSERT OR REPLACE INTO kv_store (namespace, key, value) VALUES ('arena', ?, ?)").run(`run:${t.seed}:${t.target}`,JSON.stringify(t))}catch(e){console.error(r.dim(`  note: run not persisted (${c(e)})`))}if(a.json){console.log(JSON.stringify(t,null,2));return}let d=new Map(t.strategies.map(e=>[e.id,e]));console.log(r.blue(`
   Arena: ${t.target} \xB7 seed ${t.seed} \xB7 ${t.mutantsTotal} mutants
 `)),console.log("  rank  id   kill-rate  coverage  cost  fitness  groups"),t.ranking.forEach((e,s)=>{let n=d.get(e),u=n.coveragePct===null?"   n/a":`${n.coveragePct.toFixed(2)}%`.padStart(7);console.log(`  ${String(s+1).padEnd(5)}${n.id.padEnd(5)}${(n.killRate*100).toFixed(1).padStart(6)}%   ${u}   ${n.suiteCostRatio.toFixed(2).padEnd(6)}${n.fitness.toFixed(4).padEnd(9)}${n.name}`+(n.baselinePassed?"":r.red("  [baseline FAILED]")))}),console.log(`
   competitive array (row beats column = 1):`);let o=t.strategies.map(e=>e.id);if(console.log(`        ${o.map(e=>e.padEnd(4)).join("")}`),t.competitiveArray.forEach((e,s)=>{console.log(`    ${o[s].padEnd(4)}${e.map(n=>String(n).padStart(2).padEnd(4)).join("")}`)}),t.evolution.length>0){console.log(`
   evolution:`);for(let e of t.evolution)console.log(`    step ${e.step}: [${e.groups.join("+")}] fitness ${e.fitness.toFixed(4)} ${e.accepted?r.green("accepted"):"rejected"}`)}let l=d.get(t.ranking[0]);console.log(r.green(`
   winner: ${l.id} [${l.name}] \u2014 kill ${(l.killRate*100).toFixed(1)}%, fitness ${l.fitness.toFixed(4)}
-`))}catch(i){console.error(r.red(`  \u2717 ${c(i)}`)),await g(1)}}),m.command("list").description("List persisted arena runs").option("--json","Output as JSON").action(async a=>{if(await p())try{let{getUnifiedMemory:i}=await import("./unified-memory-CXHLHB5I.js"),t=i();t.isInitialized()||await t.initialize();let d=t.getDatabase().prepare("SELECT key, value FROM kv_store WHERE namespace = 'arena' ORDER BY key").all();if(a.json){console.log(JSON.stringify(d.map(o=>({key:o.key,result:JSON.parse(o.value)})),null,2));return}if(d.length===0){console.log(r.yellow("  no persisted arena runs"));return}for(let o of d){let l=JSON.parse(o.value),e=l.strategies.find(s=>s.id===l.ranking[0]);console.log(`  ${r.green(o.key)} \u2014 winner ${e?.id} [${e?.name}] fitness ${e?.fitness}`)}}catch(i){console.error(r.red(`  \u2717 ${c(i)}`)),await g(1)}}),m}export{x as createArenaCommand};
+`))}catch(i){console.error(r.red(`  \u2717 ${c(i)}`)),await g(1)}}),m.command("list").description("List persisted arena runs").option("--json","Output as JSON").action(async a=>{if(await p())try{let{getUnifiedMemory:i}=await import("./unified-memory-DDWMC435.js"),t=i();t.isInitialized()||await t.initialize();let d=t.getDatabase().prepare("SELECT key, value FROM kv_store WHERE namespace = 'arena' ORDER BY key").all();if(a.json){console.log(JSON.stringify(d.map(o=>({key:o.key,result:JSON.parse(o.value)})),null,2));return}if(d.length===0){console.log(r.yellow("  no persisted arena runs"));return}for(let o of d){let l=JSON.parse(o.value),e=l.strategies.find(s=>s.id===l.ranking[0]);console.log(`  ${r.green(o.key)} \u2014 winner ${e?.id} [${e?.name}] fitness ${e?.fitness}`)}}catch(i){console.error(r.red(`  \u2717 ${c(i)}`)),await g(1)}}),m}export{x as createArenaCommand};

package/dist/cli/chunks/{arena-KXFHRWX4.js → arena-QLSBESC7.js}

@@ -1,4 +1,4 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.4");process.exit(0)}
-import"./chunk-TT23RRB7.js";import*as K from"fs";import*as M from"path";function G(t){let r=t>>>0;return function(){r|=0,r=r+1831565813|0;let n=Math.imul(r^r>>>15,1|r);return n=n+Math.imul(n^n>>>7,61|n)^n,((n^n>>>14)>>>0)/4294967296}}function w(t,r){return Math.floor(t()*r)}var z=[["===","!=="],["!==","==="],["<=","<"],[">=",">"],["&&","||"],["||","&&"],["<","<="],[">",">="],["+","-"],["*","+"]];function H(t){let r=new Array(t.length).fill(!1),n=0,e="code";for(;n<t.length;){let s=t[n],i=t[n+1];e==="code"?(s==="'"?e="single":s==='"'?e="double":s==="`"?e="template":s==="/"&&i==="/"?e="line-comment":s==="/"&&i==="*"&&(e="block-comment"),e!=="code"&&(r[n]=!0)):(r[n]=!0,e==="single"&&s==="'"&&t[n-1]!=="\\"||e==="double"&&s==='"'&&t[n-1]!=="\\"||e==="template"&&s==="`"&&t[n-1]!=="\\"||e==="line-comment"&&s===`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
+import"./chunk-JSZ663MU.js";import*as K from"fs";import*as M from"path";function G(t){let r=t>>>0;return function(){r|=0,r=r+1831565813|0;let n=Math.imul(r^r>>>15,1|r);return n=n+Math.imul(n^n>>>7,61|n)^n,((n^n>>>14)>>>0)/4294967296}}function w(t,r){return Math.floor(t()*r)}var z=[["===","!=="],["!==","==="],["<=","<"],[">=",">"],["&&","||"],["||","&&"],["<","<="],[">",">="],["+","-"],["*","+"]];function H(t){let r=new Array(t.length).fill(!1),n=0,e="code";for(;n<t.length;){let s=t[n],i=t[n+1];e==="code"?(s==="'"?e="single":s==='"'?e="double":s==="`"?e="template":s==="/"&&i==="/"?e="line-comment":s==="/"&&i==="*"&&(e="block-comment"),e!=="code"&&(r[n]=!0)):(r[n]=!0,e==="single"&&s==="'"&&t[n-1]!=="\\"||e==="double"&&s==='"'&&t[n-1]!=="\\"||e==="template"&&s==="`"&&t[n-1]!=="\\"||e==="line-comment"&&s===`
 `?e="code":e==="block-comment"&&s==="*"&&i==="/"&&(r[n+1]=!0,n++,e="code")),n++}return r}function E(t,r){let n=1;for(let e=0;e<r;e++)t[e]===`
 `&&n++;return n}function A(t,r){let n=H(t),e=new Array(t.length).fill(!1),s=[];for(let[i,c]of z){let a=t.indexOf(i);for(;a!==-1;){let u=a+i.length,y=e.slice(a,u).some(Boolean),h=n.slice(a,u).some(Boolean),v=i===">"&&t[a-1]==="=",S=(i==="<"||i===">")&&(t[u]==="="||t[a-1]==="<"||t[a-1]===">");if(!y&&!h&&!v&&!S){for(let d=a;d<u;d++)e[d]=!0;s.push({id:`${r}:${E(t,a)}:${a}:${i}->${c}`,index:a,from:i,to:c,line:E(t,a)})}a=t.indexOf(i,a+1)}}return s.sort((i,c)=>i.index-c.index)}function W(t,r){return t.slice(0,r.index)+r.to+t.slice(r.index+r.from.length)}import*as m from"fs";import*as f from"path";import*as L from"os";import{spawnSync as J}from"child_process";function I(t){let r=f.resolve(t),n=f.join(r,"src"),e=f.join(r,"tests");if(!m.existsSync(n)||!m.existsSync(e))throw new Error(`not an arena fixture (expected src/ and tests/): ${r}`);let s=m.readdirSync(n).filter(c=>c.endsWith(".mjs")).sort().map(c=>f.join("src",c)),i={};for(let c of m.readdirSync(e).filter(a=>a.endsWith(".test.mjs")).sort())i[c.replace(".test.mjs","")]=f.join("tests",c);if(s.length===0||Object.keys(i).length===0)throw new Error(`fixture has no src/*.mjs or tests/*.test.mjs: ${r}`);return{root:r,sourceFiles:s,testGroups:i}}function T(t,r){let n=m.mkdtempSync(f.join(r,"arena-ws-"));m.mkdirSync(f.join(n,"src"),{recursive:!0}),m.mkdirSync(f.join(n,"tests"),{recursive:!0});for(let e of t.layout.sourceFiles){let s=t.mutatedFile&&t.mutatedFile.relPath===e?t.mutatedFile.content:m.readFileSync(f.join(t.layout.root,e),"utf8");m.writeFileSync(f.join(n,e),s)}for(let e of t.groups){let s=t.layout.testGroups[e];m.copyFileSync(f.join(t.layout.root,s),f.join(n,s))}return n}function $(t,r={}){let n=["--test"];r.coverage&&n.push("--experimental-test-coverage");let e=m.readdirSync(f.join(t,"tests")).filter(u=>u.endsWith(".test.mjs")).sort().map(u=>f.join("tests",u));n.push(...e);let s=process.hrtime.bigint(),i=J(process.execPath,n,{cwd:t,timeout:r.timeoutMs??12e4,encoding:"utf8"}),c=Number(process.hrtime.bigint()-s)/1e6,a=null;if(r.coverage){let u=/all files\s*\|\s*([\d.]+)/.exec(i.stdout??"");a=u?Number(u[1]):null}return{ok:i.status===0,durationMs:Math.round(c),coveragePct:a}}function N(){return m.mkdtempSync(f.join(L.tmpdir(),"qe-arena-"))}function B(t){m.rmSync(t,{recursive:!0,force:!0})}var k={kill:.6,coverage:.3,runtimePenalty:.1};function Q(t,r,n){let e=[...t].sort(),s=new Set([e.join("+")]),i=[{id:"s1",name:`all(${e.join("+")})`,groups:e}],c=0;for(;i.length<r&&c++<200;){let a=e.filter(()=>n()<.5);if(a.length===0)continue;let u=a.join("+");s.has(u)||(s.add(u),i.push({id:`s${i.length+1}`,name:u,groups:a}))}return i}function C(t,r,n){let e=r===null?0:r/100,s=k.kill*t+k.coverage*e-k.runtimePenalty*n;return Math.round(s*1e4)/1e4}function D(t,r,n,e){let s=T({layout:t,groups:r.groups},e),i=$(s,{coverage:!0});if(!i.ok)return{baselinePassed:!1,killed:0,total:0,coveragePct:i.coveragePct,runtimeMs:i.durationMs};let c=0,a=0;for(let u of n)for(let y of u.mutants){a++;let h=T({layout:t,groups:r.groups,mutatedFile:{relPath:u.relPath,content:W(u.source,y)}},e);$(h).ok||c++}return{baselinePassed:!0,killed:c,total:a,coveragePct:i.coveragePct,runtimeMs:i.durationMs}}function rt(t){let r=t.seed??42,n=t.log??(()=>{}),e=G(r),s=I(t.target),i=N();try{let c=t.maxMutants??24,a=s.sourceFiles.map(l=>{let o=K.readFileSync(M.join(s.root,l),"utf8");return{relPath:l,source:o,mutants:A(o,l)}}),u=a.flatMap(l=>l.mutants.map(o=>({file:l.relPath,m:o})));if(u.length>c){let l=new Set;for(;l.size<c;)l.add(u[w(e,u.length)].m.id);for(let o of a)o.mutants=o.mutants.filter(p=>l.has(p.id));u=a.flatMap(o=>o.mutants.map(p=>({file:o.relPath,m:p})))}n(`mutants: ${u.length} (of ${a.reduce((l,o)=>l+A(o.source,o.relPath).length,0)} enumerated)`);let y=Q(Object.keys(s.testGroups),t.strategies??4,e),h={},v=y.map(l=>{n(`evaluating ${l.id} [${l.name}] ...`);let o=D(s,l,a,i);return h[l.id]=o.runtimeMs,{s:l,e:o}}),S=Object.keys(s.testGroups).length,d=v.map(({s:l,e:o})=>{let p=o.total>0?Math.round(o.killed/o.total*1e4)/1e4:0,g=Math.round(l.groups.length/S*1e4)/1e4;return{...l,baselinePassed:o.baselinePassed,mutantsKilled:o.killed,mutantsTotal:o.total,killRate:p,coveragePct:o.coveragePct,suiteCostRatio:g,fitness:o.baselinePassed?C(p,o.coveragePct,g):0}}),P=[...d].sort((l,o)=>o.fitness-l.fitness||l.id.localeCompare(o.id)).map(l=>l.id),U=d.map(l=>d.map(o=>l.fitness>o.fitness?1:l.fitness<o.fitness?-1:0)),j=[];if(t.evolveSteps&&t.evolveSteps>0){let l=Object.keys(s.testGroups).sort(),o=d.find(g=>g.id===P[0]).groups,p=d.find(g=>g.id===P[0]).fitness;for(let g=1;g<=t.evolveSteps;g++){let R=l[w(e,l.length)],b=o.includes(R)?o.filter(q=>q!==R):[...o,R].sort();if(b.length===0){j.push({step:g,groups:b,fitness:0,accepted:!1});continue}let x=D(s,{id:`evo${g}`,name:b.join("+"),groups:b},a,i),_=x.total>0?x.killed/x.total:0,F=x.baselinePassed?C(_,x.coveragePct,b.length/l.length):0,O=F>p;j.push({step:g,groups:b,fitness:F,accepted:O}),O&&(o=b,p=F)}}return{contract:"arena-result@1",seed:r,target:M.relative(process.cwd(),s.root)||".",weights:{...k},mutantsTotal:u.length,strategies:d,ranking:P,competitiveArray:U,evolution:j,informational:{runtimesMs:h}}}finally{B(i)}}export{Q as buildStrategies,rt as runArena};

package/dist/cli/chunks/{audit-YSGA7UWT.js → audit-CVZQMF55.js}

@@ -1,3 +1,3 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.4");process.exit(0)}
-import{d as f,e as g,f as m,g as y}from"./chunk-CIZ5JPDC.js";import{o as L}from"./chunk-55RWDRJD.js";import"./chunk-R4VL6E65.js";import"./chunk-RJCYCLZV.js";import"./chunk-NA7B2QYB.js";import"./chunk-Y3MW3YBC.js";import{b as l}from"./chunk-PEPFCPES.js";import"./chunk-DHJPWQBR.js";import"./chunk-G6T45OIC.js";import"./chunk-BGE6FOLM.js";import{p as E,q as w}from"./chunk-5YPYDPBJ.js";import"./chunk-HDSAM2RE.js";import"./chunk-KCZR45PA.js";import"./chunk-BFP7KO7P.js";import"./chunk-ODKLFVYC.js";import"./chunk-VD6QRULW.js";import"./chunk-KHFNNVJA.js";import"./chunk-CNG6GQEZ.js";import{g as v}from"./chunk-TT23RRB7.js";import{Command as x}from"commander";import c from"chalk";L();import{existsSync as p}from"node:fs";import b from"node:path";function C(n,i){let e=[];e.push(c.bold("Witness Chain Audit Verification")),e.push("");let t=i?c.green("ENABLED"):c.yellow("DISABLED");e.push(`  Feature Flag: ${t}`),e.push(`  Chain Length:  ${n.length} receipts`);let r=n.valid?c.green("VALID"):c.red("BROKEN");return e.push(`  Integrity:    ${r}`),n.length>0&&e.push(`  Last Hash:    ${n.lastHash.slice(0,16)}...`),!n.valid&&n.brokenAt>=0&&(e.push(""),e.push(c.red(`  Break detected at index ${n.brokenAt}`)),e.push(c.red(`  ${n.message}`))),e.push(""),e.join(`
-`)}function V(){try{let n=l(),i=b.join(n,".agentic-qe","memory.db");if(!p(i))return null;let e=(w(),v(E)),t=new e(i),r=f(t),s=m(r);return t.close(),s}catch{return null}}async function O(n){let i=y(),t=(V()??g()).verifyChain(),r={featureEnabled:i,chainLength:t.length,integrity:t.valid,brokenAt:t.brokenAt,lastHash:t.lastHash,message:t.message};return n.format==="json"?console.log(JSON.stringify(r,null,2)):console.log(C(t,i)),r}async function j(n){let{WitnessChain:i,hashWith:e,serializeEntry:t}=await import("./witness-chain-VT4UHHBR.js"),r=l(),s=b.join(r,".agentic-qe","memory.db"),a;if(!p(s))a={featureEnabled:!0,chainLength:0,integrity:!0,brokenAt:-1,lastHash:"",message:`No database found at ${s} \u2014 nothing to verify`};else{let{default:A}=await import("./better-sqlite3-UICJZIDG.js"),h=new A(s,{readonly:!0});try{let d=new i(h);await d.initialize();let o=d.verify({includeArchive:!0,checkSignatures:!0}),u=h.prepare("SELECT * FROM witness_chain ORDER BY id DESC LIMIT 1").get(),k=u?e(u.hash_algo||"sha256",t(u)):"";a={featureEnabled:!0,chainLength:o.entriesChecked,integrity:o.valid,brokenAt:o.brokenAt??-1,lastHash:k,message:o.valid?`Audit chain verified: ${o.entriesChecked} entries checked, ${o.signatureFailures??0} signature failures`:`Audit chain BROKEN at id=${o.brokenAt} (${o.entriesChecked} entries checked before the break)`}}finally{h.close()}}return n.format==="json"?console.log(JSON.stringify(a,null,2)):console.log(C({valid:a.integrity,length:a.chainLength,brokenAt:a.brokenAt,lastHash:a.lastHash,message:a.message},a.featureEnabled)),a}function R(n,i,e){let t=new x("audit").description("Witness chain audit trail management");return t.command("verify").description("Verify witness chain integrity").option("-F, --format <format>","Output format (json|text)","text").option("-C, --chain <chain>","Which chain to verify: governance (29 decision receipts) or audit (full QE audit trail)","governance").action(async r=>{try{let s=r.format,a=r.chain==="audit"?await j({format:s}):await O({format:s});await i(a.integrity?0:1)}catch(s){console.error("Failed to verify witness chain:",s),await i(1)}}),t}export{R as createAuditCommand,C as formatVerificationText,j as handleAuditChainVerify,O as handleAuditVerify};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
+import{d as f,e as g,f as m,g as y}from"./chunk-GTKCGPJZ.js";import{o as L}from"./chunk-EFV4ADMO.js";import"./chunk-RKOUXVZZ.js";import"./chunk-IJHCIXJC.js";import"./chunk-NQI7FWCS.js";import{b as l}from"./chunk-C3HQL6S4.js";import"./chunk-J27F4NSB.js";import"./chunk-7CD7PBHY.js";import"./chunk-J5UNP6W3.js";import"./chunk-HVU64GP5.js";import{p as E,q as w}from"./chunk-ELBZON4V.js";import"./chunk-52L77RMG.js";import"./chunk-XZSMZHM2.js";import"./chunk-CVMNJSCB.js";import"./chunk-NU7UTXMP.js";import"./chunk-D6OUCB2H.js";import"./chunk-6A44AOGN.js";import"./chunk-WJHWH5D2.js";import{f as v}from"./chunk-JSZ663MU.js";import{Command as x}from"commander";import c from"chalk";L();import{existsSync as p}from"node:fs";import b from"node:path";function C(n,i){let e=[];e.push(c.bold("Witness Chain Audit Verification")),e.push("");let t=i?c.green("ENABLED"):c.yellow("DISABLED");e.push(`  Feature Flag: ${t}`),e.push(`  Chain Length:  ${n.length} receipts`);let r=n.valid?c.green("VALID"):c.red("BROKEN");return e.push(`  Integrity:    ${r}`),n.length>0&&e.push(`  Last Hash:    ${n.lastHash.slice(0,16)}...`),!n.valid&&n.brokenAt>=0&&(e.push(""),e.push(c.red(`  Break detected at index ${n.brokenAt}`)),e.push(c.red(`  ${n.message}`))),e.push(""),e.join(`
+`)}function V(){try{let n=l(),i=b.join(n,".agentic-qe","memory.db");if(!p(i))return null;let e=(w(),v(E)),t=new e(i),r=f(t),s=m(r);return t.close(),s}catch{return null}}async function O(n){let i=y(),t=(V()??g()).verifyChain(),r={featureEnabled:i,chainLength:t.length,integrity:t.valid,brokenAt:t.brokenAt,lastHash:t.lastHash,message:t.message};return n.format==="json"?console.log(JSON.stringify(r,null,2)):console.log(C(t,i)),r}async function j(n){let{WitnessChain:i,hashWith:e,serializeEntry:t}=await import("./witness-chain-ZW6KKUZU.js"),r=l(),s=b.join(r,".agentic-qe","memory.db"),a;if(!p(s))a={featureEnabled:!0,chainLength:0,integrity:!0,brokenAt:-1,lastHash:"",message:`No database found at ${s} \u2014 nothing to verify`};else{let{default:A}=await import("./better-sqlite3-4DSBPDRH.js"),h=new A(s,{readonly:!0});try{let d=new i(h);await d.initialize();let o=d.verify({includeArchive:!0,checkSignatures:!0}),u=h.prepare("SELECT * FROM witness_chain ORDER BY id DESC LIMIT 1").get(),k=u?e(u.hash_algo||"sha256",t(u)):"";a={featureEnabled:!0,chainLength:o.entriesChecked,integrity:o.valid,brokenAt:o.brokenAt??-1,lastHash:k,message:o.valid?`Audit chain verified: ${o.entriesChecked} entries checked, ${o.signatureFailures??0} signature failures`:`Audit chain BROKEN at id=${o.brokenAt} (${o.entriesChecked} entries checked before the break)`}}finally{h.close()}}return n.format==="json"?console.log(JSON.stringify(a,null,2)):console.log(C({valid:a.integrity,length:a.chainLength,brokenAt:a.brokenAt,lastHash:a.lastHash,message:a.message},a.featureEnabled)),a}function R(n,i,e){let t=new x("audit").description("Witness chain audit trail management");return t.command("verify").description("Verify witness chain integrity").option("-F, --format <format>","Output format (json|text)","text").option("-C, --chain <chain>","Which chain to verify: governance (29 decision receipts) or audit (full QE audit trail)","governance").action(async r=>{try{let s=r.format,a=r.chain==="audit"?await j({format:s}):await O({format:s});await i(a.integrity?0:1)}catch(s){console.error("Failed to verify witness chain:",s),await i(1)}}),t}export{R as createAuditCommand,C as formatVerificationText,j as handleAuditChainVerify,O as handleAuditVerify};

package/dist/cli/chunks/base-P3Z4IKCT.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
+import{a,b,c,d,e,f,g,h,i,j,k,l}from"./chunk-YDFL445W.js";import"./chunk-LULD4JV2.js";import"./chunk-EFV4ADMO.js";import"./chunk-RKOUXVZZ.js";import"./chunk-IJHCIXJC.js";import"./chunk-NQI7FWCS.js";import"./chunk-C3HQL6S4.js";import"./chunk-J27F4NSB.js";import"./chunk-7CD7PBHY.js";import"./chunk-J5UNP6W3.js";import"./chunk-W2XCZU62.js";import"./chunk-7VFY7TUR.js";import"./chunk-HVU64GP5.js";import"./chunk-ELBZON4V.js";import"./chunk-52L77RMG.js";import"./chunk-XZSMZHM2.js";import"./chunk-CVMNJSCB.js";import"./chunk-NU7UTXMP.js";import"./chunk-D6OUCB2H.js";import"./chunk-6A44AOGN.js";import"./chunk-WJHWH5D2.js";import"./chunk-JSZ663MU.js";export{l as MCPToolBase,k as defaultToolLogger,j as getKernel,i as getLLMRouter,e as getMemoryBackend,g as getSharedLLMRouter,c as getSharedMemoryBackend,a as isMemoryOnlyMode,b as registerRvfResetFn,h as resetSharedLLMRouter,d as resetSharedMemoryBackend,f as setSharedLLMRouter};

package/dist/cli/chunks/{better-sqlite3-UICJZIDG.js → better-sqlite3-4DSBPDRH.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.4");process.exit(0)}
-import{a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,q as p}from"./chunk-5YPYDPBJ.js";import"./chunk-TT23RRB7.js";p();export{i as DotProductAttention,h as FlashAttention,k as HyperbolicAttention,l as LinearAttention,m as MoEAttention,j as MultiHeadAttention,b as RuvectorLayer,n as SonaEngine,c as TensorCompress,a as default,d as differentiableSearch,f as getCompressionLevel,e as hierarchicalForward,g as init,o as pipeline};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.14.5");process.exit(0)}
+import{a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,q as p}from"./chunk-ELBZON4V.js";import"./chunk-JSZ663MU.js";p();export{i as DotProductAttention,h as FlashAttention,k as HyperbolicAttention,l as LinearAttention,m as MoEAttention,j as MultiHeadAttention,b as RuvectorLayer,n as SonaEngine,c as TensorCompress,a as default,d as differentiableSearch,f as getCompressionLevel,e as hierarchicalForward,g as init,o as pipeline};