agentic-qe 3.13.0 → 3.13.1

package/dist/cli/chunks/{upgrade-A2PQ5EWK.js → upgrade-V6UQODJF.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.0");process.exit(0)}
-import{S as m,b as c}from"./chunk-3GSYD5SL.js";import"./chunk-ES7WCYOU.js";m();import{Command as f}from"commander";import n from"chalk";import{createRequire as u}from"node:module";import{platform as p,arch as v}from"node:os";var y=[{packageName:"better-sqlite3",role:"SQLite storage (required \u2014 memory.db, patterns, audit)",fallback:"n/a \u2014 required",affectsFlags:[],required:!0},{packageName:"web-tree-sitter",role:"Tree-sitter WASM parser runtime (required \u2014 code intelligence)",fallback:"n/a \u2014 required",affectsFlags:[],required:!0},{packageName:"hnswlib-node",role:"Canonical HNSW vector index (default since ADR-090)",fallback:"ProgressiveHnswBackend (JS) \u2014 correct but slower on large codebases",affectsFlags:["useNativeHNSW"],required:!1},{packageName:"@ruvector/rvf-node",role:"Persistent HNSW pattern store + RVF brain export format",fallback:"SQLite-backed HNSW + JSONL brain export",affectsFlags:["useRVFPatternStore"],required:!1},{packageName:"@ruvector/solver-node",role:"Sublinear PageRank on the pattern citation graph",fallback:"TypeScript power iteration \u2014 O(n\xB7m) (practical cap \u2248 50K nodes)",affectsFlags:["useSublinearSolver"],required:!1},{packageName:"@ruvector/attention",role:"Flash Attention with SIMD acceleration",fallback:"Plain attention \u2014 2.5\u20137\xD7 slower on large sequences",affectsFlags:["useQEFlashAttention"],required:!1},{packageName:"@ruvector/gnn",role:"GraphMAE native acceleration",fallback:"TypeScript GraphMAE \u2014 correct but slower",affectsFlags:["useGraphMAEEmbeddings"],required:!1}];function b(){let r=u(import.meta.url);return o=>{try{return r(o),{ok:!0}}catch(a){return{ok:!1,error:a instanceof Error?a:new Error(String(a))}}}}function N(r,o){return r.map(a=>{let s=o(a.packageName);if(s.ok)return{...a,status:"loaded"};let t=E(s.error),e=a.required?"required-missing":"missing";return{...a,status:e,loadError:s.error.message}})}function E(r){return r.code==="MODULE_NOT_FOUND"}var R={RUVECTOR_USE_RVF_PATTERN_STORE:"useRVFPatternStore",RUVECTOR_USE_SUBLINEAR_SOLVER:"useSublinearSolver",RUVECTOR_USE_NATIVE_HNSW:"useNativeHNSW",RUVECTOR_USE_GNN_INDEX:"useQEGNNIndex",RUVECTOR_USE_FLASH_ATTENTION:"useQEFlashAttention",RUVECTOR_USE_GRAPH_MAE_EMBEDDINGS:"useGraphMAEEmbeddings"};function S(r){let o=[];for(let[a,s]of Object.entries(R)){let t=r[a];t!==void 0&&o.push({envVar:a,value:t,flagName:s})}return o}function k(r){let o=[],a=new Map(r.natives.map(e=>[e.packageName,e]));for(let e of r.natives)e.status==="required-missing"&&o.push({severity:"error",message:`Required dependency missing: ${e.packageName} \u2014 ${e.role}`,action:`npm install ${e.packageName}`});for(let e of r.natives)e.status==="missing"&&!e.required&&o.push({severity:"warn",message:`Optional native missing: ${e.packageName} \u2014 falls back to ${e.fallback}`,action:`npm install ${e.packageName}`});let s={...r.flags};for(let e of r.envOverrides){let i=r.natives.filter(d=>d.affectsFlags.includes(e.flagName)),l=i.some(d=>d.status==="loaded");if((e.value==="true"||e.value==="1")&&i.length>0&&!l){let d=i.map(g=>g.packageName).join(", ");o.push({severity:"warn",message:`${e.envVar}=${e.value} requests flag ${e.flagName}=true, but required native(s) not loaded: ${d}. The flag will silently fall back.`,action:i[0]?`npm install ${i[0].packageName}`:void 0})}}return r.natives.filter(e=>!e.required&&e.status==="missing").length===0&&r.natives.every(e=>e.status!=="required-missing")&&o.push({severity:"info",message:"All recommended native bindings are loaded \u2014 no action required."}),o}function q(r){let o=N(y,r.probe),a=S(r.env),s=k({natives:o,flags:r.flags,envOverrides:a}),t=o.filter(l=>!l.required&&l.status==="loaded").length,e=o.filter(l=>!l.required&&l.status==="missing").length,i=o.filter(l=>l.required).every(l=>l.status==="loaded");return{aqeVersion:r.aqeVersion,platform:{os:p(),arch:v(),node:process.version},natives:o,flags:r.flags,envOverrides:a,recommendations:s,summary:{requiredOk:i,optionalMissingCount:e,optionalLoadedCount:t}}}function h(r,o){return r.summary.requiredOk?o&&r.summary.optionalMissingCount>0?1:0:2}function O(r){let o=[],a=(e="")=>o.push(e);a(""),a(n.bold.blue("  aqe upgrade \u2014 native binding report")),a(n.gray("  \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500")),a(""),a(`  AQE:       ${n.cyan(r.aqeVersion)}`),a(`  Platform:  ${n.cyan(`${r.platform.os} ${r.platform.arch}`)}`),a(`  Node:      ${n.cyan(r.platform.node)}`),a(""),a(n.blue("  Native bindings:"));for(let e of r.natives){let i=$(e.status);a(`    ${i} ${n.bold(e.packageName.padEnd(28))} ${n.gray(e.role)}`),e.status!=="loaded"&&e.loadError&&a(`        ${n.gray(e.loadError.split(`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{S as m,b as c}from"./chunk-IJP42OGW.js";import"./chunk-OE4B6LDZ.js";m();import{Command as f}from"commander";import n from"chalk";import{createRequire as u}from"node:module";import{platform as p,arch as v}from"node:os";var y=[{packageName:"better-sqlite3",role:"SQLite storage (required \u2014 memory.db, patterns, audit)",fallback:"n/a \u2014 required",affectsFlags:[],required:!0},{packageName:"web-tree-sitter",role:"Tree-sitter WASM parser runtime (required \u2014 code intelligence)",fallback:"n/a \u2014 required",affectsFlags:[],required:!0},{packageName:"hnswlib-node",role:"Canonical HNSW vector index (default since ADR-090)",fallback:"ProgressiveHnswBackend (JS) \u2014 correct but slower on large codebases",affectsFlags:["useNativeHNSW"],required:!1},{packageName:"@ruvector/rvf-node",role:"Persistent HNSW pattern store + RVF brain export format",fallback:"SQLite-backed HNSW + JSONL brain export",affectsFlags:["useRVFPatternStore"],required:!1},{packageName:"@ruvector/solver-node",role:"Sublinear PageRank on the pattern citation graph",fallback:"TypeScript power iteration \u2014 O(n\xB7m) (practical cap \u2248 50K nodes)",affectsFlags:["useSublinearSolver"],required:!1},{packageName:"@ruvector/attention",role:"Flash Attention with SIMD acceleration",fallback:"Plain attention \u2014 2.5\u20137\xD7 slower on large sequences",affectsFlags:["useQEFlashAttention"],required:!1},{packageName:"@ruvector/gnn",role:"GraphMAE native acceleration",fallback:"TypeScript GraphMAE \u2014 correct but slower",affectsFlags:["useGraphMAEEmbeddings"],required:!1}];function b(){let r=u(import.meta.url);return o=>{try{return r(o),{ok:!0}}catch(a){return{ok:!1,error:a instanceof Error?a:new Error(String(a))}}}}function N(r,o){return r.map(a=>{let s=o(a.packageName);if(s.ok)return{...a,status:"loaded"};let t=E(s.error),e=a.required?"required-missing":"missing";return{...a,status:e,loadError:s.error.message}})}function E(r){return r.code==="MODULE_NOT_FOUND"}var R={RUVECTOR_USE_RVF_PATTERN_STORE:"useRVFPatternStore",RUVECTOR_USE_SUBLINEAR_SOLVER:"useSublinearSolver",RUVECTOR_USE_NATIVE_HNSW:"useNativeHNSW",RUVECTOR_USE_GNN_INDEX:"useQEGNNIndex",RUVECTOR_USE_FLASH_ATTENTION:"useQEFlashAttention",RUVECTOR_USE_GRAPH_MAE_EMBEDDINGS:"useGraphMAEEmbeddings"};function S(r){let o=[];for(let[a,s]of Object.entries(R)){let t=r[a];t!==void 0&&o.push({envVar:a,value:t,flagName:s})}return o}function k(r){let o=[],a=new Map(r.natives.map(e=>[e.packageName,e]));for(let e of r.natives)e.status==="required-missing"&&o.push({severity:"error",message:`Required dependency missing: ${e.packageName} \u2014 ${e.role}`,action:`npm install ${e.packageName}`});for(let e of r.natives)e.status==="missing"&&!e.required&&o.push({severity:"warn",message:`Optional native missing: ${e.packageName} \u2014 falls back to ${e.fallback}`,action:`npm install ${e.packageName}`});let s={...r.flags};for(let e of r.envOverrides){let i=r.natives.filter(d=>d.affectsFlags.includes(e.flagName)),l=i.some(d=>d.status==="loaded");if((e.value==="true"||e.value==="1")&&i.length>0&&!l){let d=i.map(g=>g.packageName).join(", ");o.push({severity:"warn",message:`${e.envVar}=${e.value} requests flag ${e.flagName}=true, but required native(s) not loaded: ${d}. The flag will silently fall back.`,action:i[0]?`npm install ${i[0].packageName}`:void 0})}}return r.natives.filter(e=>!e.required&&e.status==="missing").length===0&&r.natives.every(e=>e.status!=="required-missing")&&o.push({severity:"info",message:"All recommended native bindings are loaded \u2014 no action required."}),o}function q(r){let o=N(y,r.probe),a=S(r.env),s=k({natives:o,flags:r.flags,envOverrides:a}),t=o.filter(l=>!l.required&&l.status==="loaded").length,e=o.filter(l=>!l.required&&l.status==="missing").length,i=o.filter(l=>l.required).every(l=>l.status==="loaded");return{aqeVersion:r.aqeVersion,platform:{os:p(),arch:v(),node:process.version},natives:o,flags:r.flags,envOverrides:a,recommendations:s,summary:{requiredOk:i,optionalMissingCount:e,optionalLoadedCount:t}}}function h(r,o){return r.summary.requiredOk?o&&r.summary.optionalMissingCount>0?1:0:2}function O(r){let o=[],a=(e="")=>o.push(e);a(""),a(n.bold.blue("  aqe upgrade \u2014 native binding report")),a(n.gray("  \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500")),a(""),a(`  AQE:       ${n.cyan(r.aqeVersion)}`),a(`  Platform:  ${n.cyan(`${r.platform.os} ${r.platform.arch}`)}`),a(`  Node:      ${n.cyan(r.platform.node)}`),a(""),a(n.blue("  Native bindings:"));for(let e of r.natives){let i=$(e.status);a(`    ${i} ${n.bold(e.packageName.padEnd(28))} ${n.gray(e.role)}`),e.status!=="loaded"&&e.loadError&&a(`        ${n.gray(e.loadError.split(`
 `)[0])}`)}a(""),a(n.blue("  Flag state (after env overrides):"));let s=Object.entries(r.flags);for(let[e,i]of s){let l=i?n.green("on "):n.yellow("off");a(`    ${l}  ${e}`)}if(r.envOverrides.length>0){a(""),a(n.blue("  Env overrides in effect:"));for(let e of r.envOverrides)a(`    ${n.cyan(e.envVar)}=${n.cyan(e.value)}  ${n.gray(`\u2192 ${e.flagName}`)}`)}if(a(""),a(n.blue("  Recommendations:")),r.recommendations.length===0)a(n.gray("    (none)"));else for(let e of r.recommendations){let i=F(e.severity);a(`    ${i} ${e.message}`),e.action&&a(`        ${n.gray("\u2192")} ${n.cyan(e.action)}`)}a("");let t=r.summary.requiredOk?n.green("OK"):n.red("FAIL");return a(`  Summary:   required ${t}    optional loaded ${n.cyan(r.summary.optionalLoadedCount)} / ${n.cyan(r.summary.optionalLoadedCount+r.summary.optionalMissingCount)}`),a(""),o.join(`
 `)}function $(r){switch(r){case"loaded":return n.green("\u2713");case"missing":return n.yellow("\u2026");case"required-missing":return n.red("\u2717")}}function F(r){switch(r){case"info":return n.green("\u2713");case"warn":return n.yellow("!");case"error":return n.red("\u2717")}}function U(r){return new f("upgrade").description("Detect optional native bindings and recommend install / flag changes (read-only)").option("--json","Emit the report as JSON to stdout",!1).option("--strict","Exit non-zero if any recommended optional native is missing",!1).action(async a=>{let s=A(),t=c(),e=q({aqeVersion:s,probe:b(),env:process.env,flags:{useRVFPatternStore:t.useRVFPatternStore,useSublinearSolver:t.useSublinearSolver,useNativeHNSW:t.useNativeHNSW,useGraphMAEEmbeddings:t.useGraphMAEEmbeddings,useQEFlashAttention:t.useQEFlashAttention}});a.json?process.stdout.write(JSON.stringify(e,null,2)+`
 `):process.stdout.write(O(e)),await r(h(e,a.strict===!0))})}function A(){try{return u(import.meta.url)("../../../package.json").version??"unknown"}catch{return"unknown"}}export{y as NATIVE_CATALOG,k as buildRecommendations,q as buildReport,b as createDefaultLoadProbe,U as createUpgradeCommand,N as detectNatives,h as exitCodeFor,S as readEnvOverrides,O as renderReportHuman};

package/dist/cli/chunks/{validate-UXV7UQUT.js → validate-UBZAE5RW.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.0");process.exit(0)}
-import{e as V}from"./chunk-5KAT6WBQ.js";import"./chunk-XFCWYQHW.js";import{a as P}from"./chunk-2NRZYQSF.js";import"./chunk-4BDLD7V2.js";import"./chunk-PP2RYSHT.js";import"./chunk-JPIBPKBP.js";import"./chunk-5EIOQCGN.js";import"./chunk-OETDMOOE.js";import"./chunk-IPHLXAMX.js";import"./chunk-MVI2QMRW.js";import"./chunk-6SXKCIN5.js";import"./chunk-IHQTXJAQ.js";import"./chunk-FBBZHATF.js";import"./chunk-G5DFYX3J.js";import"./chunk-W5YEIHIO.js";import"./chunk-BUGWPTMF.js";import"./chunk-HVB2L52I.js";import"./chunk-OXXMVQDF.js";import"./chunk-NUQBJGGF.js";import{b as v,d as F}from"./chunk-2DIT5AUU.js";import"./chunk-CYL2FV23.js";import"./chunk-SNTUKW4Q.js";import"./chunk-TVMFH5N2.js";import"./chunk-THBTN7XB.js";import"./chunk-RDU4WTV2.js";import"./chunk-LBE2P6UC.js";import"./chunk-IZRLIWFN.js";import"./chunk-AO7AHX6K.js";import"./chunk-YRQLVGCI.js";import"./chunk-3GSYD5SL.js";import"./chunk-ES7WCYOU.js";F();import{Command as M}from"commander";import{readFileSync as A,writeFileSync as S,existsSync as C,readdirSync as O,statSync as B}from"fs";import{join as b,resolve as j,basename as I}from"path";import e from"chalk";function R(i){let n=j(i);if(!C(n))throw new Error(`Input path not found: ${n}`);if(B(n).isDirectory()){let r=[],t=O(n).filter(o=>o.endsWith(".json")).map(o=>b(n,o));for(let o of t)try{let u=v(A(o,"utf-8"));if($(u))r.push(u);else if(Array.isArray(u))for(let d of u)$(d)&&r.push(d)}catch{console.warn(e.yellow(`Warning: Could not parse ${I(o)}`))}return r}else{let r=v(A(n,"utf-8"));if($(r))return[r];if(Array.isArray(r))return r.filter($);throw new Error("Invalid input format. Expected ParallelValidationRunResult or array of results.")}}function $(i){return typeof i=="object"&&i!==null&&"runId"in i&&"model"in i&&"outcomes"in i&&Array.isArray(i.outcomes)}function D(){return P({storeQEPattern:async()=>{},searchQEPatterns:async()=>({success:!0,value:[]}),addFact:async()=>({success:!0,value:void 0}),query:async()=>({success:!0,value:{results:[],confidence:0}}),getStats:()=>({totalPatterns:0,totalFacts:0,indexHealth:1,lastCompaction:new Date})})}function T(){let i=process.cwd(),n=[b(i,".claude/skills/trust-tier-manifest.json"),b(i,".claude/skills/skills-manifest.json")];for(let g of n)if(C(g))return g;return b(i,".claude/skills/trust-tier-manifest.json")}function L(i,n,g){let r=g.format||"markdown";if(r==="markdown"||r==="both"){let t=n.generateMarkdownReport(i);if(g.output){let o=r==="both"?g.output.replace(/\.\w+$/,".md"):g.output;S(o,t),console.log(e.green(`Markdown report written to: ${o}`))}else console.log(`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{e as V}from"./chunk-FQXQJMSF.js";import"./chunk-MX5ZDKRR.js";import{a as P}from"./chunk-23MT7OBY.js";import"./chunk-TDGE52HJ.js";import"./chunk-H7YZ2YF2.js";import"./chunk-THFLRJT6.js";import"./chunk-GOV2MHLV.js";import"./chunk-S6F3IJMK.js";import"./chunk-OPQY2333.js";import"./chunk-N7WAZ2Y6.js";import"./chunk-IJA4WS7B.js";import"./chunk-XOQQGZFY.js";import"./chunk-AY7S7AWN.js";import"./chunk-UCQ66N6M.js";import"./chunk-WWP2VXYJ.js";import"./chunk-SHWXADCI.js";import"./chunk-BBLWZT5I.js";import"./chunk-ELMUHNXN.js";import"./chunk-YBPCBFEE.js";import{b as v,d as F}from"./chunk-ZLCATRXI.js";import"./chunk-AYYDO52G.js";import"./chunk-EVDYFGVH.js";import"./chunk-IZO6TPGX.js";import"./chunk-CWP4RMOM.js";import"./chunk-3K4YC3GC.js";import"./chunk-NP4CP3LR.js";import"./chunk-DVPGQG4W.js";import"./chunk-7WEHZCSK.js";import"./chunk-UJ6TMZC6.js";import"./chunk-IJP42OGW.js";import"./chunk-OE4B6LDZ.js";F();import{Command as M}from"commander";import{readFileSync as A,writeFileSync as S,existsSync as C,readdirSync as O,statSync as B}from"fs";import{join as b,resolve as j,basename as I}from"path";import e from"chalk";function R(i){let n=j(i);if(!C(n))throw new Error(`Input path not found: ${n}`);if(B(n).isDirectory()){let r=[],t=O(n).filter(o=>o.endsWith(".json")).map(o=>b(n,o));for(let o of t)try{let u=v(A(o,"utf-8"));if($(u))r.push(u);else if(Array.isArray(u))for(let d of u)$(d)&&r.push(d)}catch{console.warn(e.yellow(`Warning: Could not parse ${I(o)}`))}return r}else{let r=v(A(n,"utf-8"));if($(r))return[r];if(Array.isArray(r))return r.filter($);throw new Error("Invalid input format. Expected ParallelValidationRunResult or array of results.")}}function $(i){return typeof i=="object"&&i!==null&&"runId"in i&&"model"in i&&"outcomes"in i&&Array.isArray(i.outcomes)}function D(){return P({storeQEPattern:async()=>{},searchQEPatterns:async()=>({success:!0,value:[]}),addFact:async()=>({success:!0,value:void 0}),query:async()=>({success:!0,value:{results:[],confidence:0}}),getStats:()=>({totalPatterns:0,totalFacts:0,indexHealth:1,lastCompaction:new Date})})}function T(){let i=process.cwd(),n=[b(i,".claude/skills/trust-tier-manifest.json"),b(i,".claude/skills/skills-manifest.json")];for(let g of n)if(C(g))return g;return b(i,".claude/skills/trust-tier-manifest.json")}function L(i,n,g){let r=g.format||"markdown";if(r==="markdown"||r==="both"){let t=n.generateMarkdownReport(i);if(g.output){let o=r==="both"?g.output.replace(/\.\w+$/,".md"):g.output;S(o,t),console.log(e.green(`Markdown report written to: ${o}`))}else console.log(`
 `+t)}if(r==="json"||r==="both"){let t=n.generateJsonReport(i);if(g.output){let o=r==="both"?g.output.replace(/\.\w+$/,".json"):g.output;S(o,t),console.log(e.green(`JSON report written to: ${o}`))}else console.log(`
 `+t)}}function W(i,n,g){let r=new M("skill").description("Skill validation and reporting (ADR-056)");return r.command("report").description("Generate aggregated report from validation results").requiredOption("-i, --input <path>","Input file or directory containing validation results").option("-o, --output <path>","Output file path (default: stdout)").option("-f, --format <format>","Output format: markdown, json, or both","markdown").option("-b, --baseline <path>","Baseline directory for regression detection").option("--detect-regressions","Enable regression detection against historical data").option("--update-manifest","Update trust tier manifest with new pass rates").option("-t, --threshold <number>","Regression threshold (0-1)",parseFloat).option("-v, --verbose","Verbose output").action(async t=>{try{t.verbose&&(console.log(e.blue(`
 Validation Result Aggregator`)),console.log(e.gray(`ADR-056 Phase 5

package/dist/cli/chunks/{validate-swarm-MMBU4FPP.js → validate-swarm-TSO2MI5X.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.0");process.exit(0)}
-import{a as i,b as k,c as d,d as p}from"./chunk-5KAT6WBQ.js";import"./chunk-XFCWYQHW.js";import{a as v}from"./chunk-WRYT4HTZ.js";import{a as h}from"./chunk-2NRZYQSF.js";import"./chunk-UMG5URNV.js";import"./chunk-4BDLD7V2.js";import"./chunk-ANYYTWOQ.js";import"./chunk-UNIBND6A.js";import"./chunk-PP2RYSHT.js";import"./chunk-JPIBPKBP.js";import"./chunk-5EIOQCGN.js";import"./chunk-OETDMOOE.js";import"./chunk-IPHLXAMX.js";import"./chunk-MVI2QMRW.js";import"./chunk-6SXKCIN5.js";import"./chunk-IHQTXJAQ.js";import"./chunk-FBBZHATF.js";import"./chunk-U2SW6KK5.js";import"./chunk-GUEZQOHL.js";import"./chunk-VLNPJAVH.js";import"./chunk-N7VOOI3U.js";import"./chunk-BCKTBGDM.js";import"./chunk-G5DFYX3J.js";import"./chunk-W5YEIHIO.js";import"./chunk-BUGWPTMF.js";import"./chunk-HVB2L52I.js";import"./chunk-OXXMVQDF.js";import"./chunk-NUQBJGGF.js";import"./chunk-2DIT5AUU.js";import"./chunk-LXPB7H2P.js";import"./chunk-QI4CGJNK.js";import"./chunk-CYL2FV23.js";import"./chunk-E3B5XTXJ.js";import"./chunk-SNTUKW4Q.js";import"./chunk-TVMFH5N2.js";import"./chunk-THBTN7XB.js";import"./chunk-RDU4WTV2.js";import"./chunk-LBE2P6UC.js";import"./chunk-IZRLIWFN.js";import"./chunk-AO7AHX6K.js";import"./chunk-YRQLVGCI.js";import"./chunk-3GSYD5SL.js";import"./chunk-ES7WCYOU.js";import{Command as x}from"commander";import o from"chalk";function j(e,t,n){let c=new x("validate").description("Validation commands for skills and agents");return c.command("swarm").description("Validate skills in parallel using Claude Flow swarms (ADR-056)").option("-s, --skills <skills>",'Comma-separated list of skills to validate, or "all" for P0 skills',"all").option("-m, --models <models>","Comma-separated list of models to validate against",p.join(",")).option("-t, --topology <topology>","Swarm topology: hierarchical or mesh","hierarchical").option("--max-concurrent <number>","Maximum concurrent skill validations",String(i.maxConcurrentSkills)).option("--max-models <number>","Maximum concurrent models per skill",String(i.maxConcurrentModels)).option("--timeout <ms>","Timeout per validation in milliseconds",String(i.timeout)).option("--no-retry","Disable retries on failure").option("-v, --verbose","Show detailed output").option("--json","Output results as JSON").action(async l=>{if(await n())try{console.log(o.blue(`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{a as i,b as k,c as d,d as p}from"./chunk-FQXQJMSF.js";import"./chunk-MX5ZDKRR.js";import{a as v}from"./chunk-XSCOEY4C.js";import{a as h}from"./chunk-23MT7OBY.js";import"./chunk-XFUF654L.js";import"./chunk-TDGE52HJ.js";import"./chunk-UHKXKWMD.js";import"./chunk-VLUJWI56.js";import"./chunk-H7YZ2YF2.js";import"./chunk-THFLRJT6.js";import"./chunk-GOV2MHLV.js";import"./chunk-S6F3IJMK.js";import"./chunk-OPQY2333.js";import"./chunk-N7WAZ2Y6.js";import"./chunk-IJA4WS7B.js";import"./chunk-XOQQGZFY.js";import"./chunk-AY7S7AWN.js";import"./chunk-AOMXMFDH.js";import"./chunk-YLAEIS6F.js";import"./chunk-2OM3TDC4.js";import"./chunk-YQCAXYBF.js";import"./chunk-FRAGSKXQ.js";import"./chunk-UCQ66N6M.js";import"./chunk-WWP2VXYJ.js";import"./chunk-SHWXADCI.js";import"./chunk-BBLWZT5I.js";import"./chunk-ELMUHNXN.js";import"./chunk-YBPCBFEE.js";import"./chunk-ZLCATRXI.js";import"./chunk-AHTOWWSE.js";import"./chunk-GTPZVLL6.js";import"./chunk-AYYDO52G.js";import"./chunk-ZIBW7CB4.js";import"./chunk-EVDYFGVH.js";import"./chunk-IZO6TPGX.js";import"./chunk-CWP4RMOM.js";import"./chunk-3K4YC3GC.js";import"./chunk-NP4CP3LR.js";import"./chunk-DVPGQG4W.js";import"./chunk-7WEHZCSK.js";import"./chunk-UJ6TMZC6.js";import"./chunk-IJP42OGW.js";import"./chunk-OE4B6LDZ.js";import{Command as x}from"commander";import o from"chalk";function j(e,t,n){let c=new x("validate").description("Validation commands for skills and agents");return c.command("swarm").description("Validate skills in parallel using Claude Flow swarms (ADR-056)").option("-s, --skills <skills>",'Comma-separated list of skills to validate, or "all" for P0 skills',"all").option("-m, --models <models>","Comma-separated list of models to validate against",p.join(",")).option("-t, --topology <topology>","Swarm topology: hierarchical or mesh","hierarchical").option("--max-concurrent <number>","Maximum concurrent skill validations",String(i.maxConcurrentSkills)).option("--max-models <number>","Maximum concurrent models per skill",String(i.maxConcurrentModels)).option("--timeout <ms>","Timeout per validation in milliseconds",String(i.timeout)).option("--no-retry","Disable retries on failure").option("-v, --verbose","Show detailed output").option("--json","Output results as JSON").action(async l=>{if(await n())try{console.log(o.blue(`
  Swarm Skill Validation
 `));let r=l.skills==="all"?[...d]:l.skills.split(",").map(y=>y.trim()),u=l.models.split(",").map(y=>y.trim()),g=P(l.topology),a={topology:g,maxConcurrentSkills:parseInt(l.maxConcurrent,10)||i.maxConcurrentSkills,maxConcurrentModels:parseInt(l.maxModels,10)||i.maxConcurrentModels,timeout:parseInt(l.timeout,10)||i.timeout,continueOnFailure:!0,retry:l.retry!==!1?i.retry:void 0};l.verbose&&(console.log(o.gray("Configuration:")),console.log(o.gray(`  Topology: ${a.topology}`)),console.log(o.gray(`  Skills: ${r.length}`)),console.log(o.gray(`  Models: ${u.length}`)),console.log(o.gray(`  Max Concurrent Skills: ${a.maxConcurrentSkills}`)),console.log(o.gray(`  Max Concurrent Models: ${a.maxConcurrentModels}`)),console.log(o.gray(`  Timeout: ${a.timeout}ms`)),console.log(o.gray(`  Retry: ${a.retry?"enabled":"disabled"}`)),console.log("")),console.log(o.cyan(`  Skills: ${r.join(", ")}`)),console.log(o.cyan(`  Models: ${u.join(", ")}`)),console.log(o.cyan(`  Topology: ${g}`)),console.log("");let m=await R(e),f=h(m),C=k(a,f),$=Date.now();console.log(o.yellow(`  Starting parallel validation...
 `));let b=await C.validateSkillsParallel(r,u),s=C.getSummary(b),w=Date.now()-$;l.json?T(s):D(s,l.verbose),console.log(o.blue(`

package/dist/cli/chunks/{vibium-R4GUVADA.js → vibium-7G3VYSQA.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.0");process.exit(0)}
-import{c as t}from"./chunk-ES7WCYOU.js";import{createRequire as o}from"module";var i,e,a,c,l,p,s,m,u,d,A,f,h,_,b,v,L,n=t(()=>{i=o(import.meta.url),e=i("vibium"),a=e,{RuvectorLayer:c,TensorCompress:l,differentiableSearch:p,hierarchicalForward:s,getCompressionLevel:m,init:u,FlashAttention:d,DotProductAttention:A,MultiHeadAttention:f,HyperbolicAttention:h,LinearAttention:_,MoEAttention:b,SonaEngine:v,pipeline:L}=e||{}});n();export{A as DotProductAttention,d as FlashAttention,h as HyperbolicAttention,_ as LinearAttention,b as MoEAttention,f as MultiHeadAttention,c as RuvectorLayer,v as SonaEngine,l as TensorCompress,a as default,p as differentiableSearch,m as getCompressionLevel,s as hierarchicalForward,u as init,L as pipeline};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{c as t}from"./chunk-OE4B6LDZ.js";import{createRequire as o}from"module";var i,e,a,c,l,p,s,m,u,d,A,f,h,_,b,v,L,n=t(()=>{i=o(import.meta.url),e=i("vibium"),a=e,{RuvectorLayer:c,TensorCompress:l,differentiableSearch:p,hierarchicalForward:s,getCompressionLevel:m,init:u,FlashAttention:d,DotProductAttention:A,MultiHeadAttention:f,HyperbolicAttention:h,LinearAttention:_,MoEAttention:b,SonaEngine:v,pipeline:L}=e||{}});n();export{A as DotProductAttention,d as FlashAttention,h as HyperbolicAttention,_ as LinearAttention,b as MoEAttention,f as MultiHeadAttention,c as RuvectorLayer,v as SonaEngine,l as TensorCompress,a as default,p as differentiableSearch,m as getCompressionLevel,s as hierarchicalForward,u as init,L as pipeline};

package/dist/cli/chunks/visual-security-6FCDY5FF.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{a}from"./chunk-ZYPESQ4M.js";import"./chunk-RSCGBHLM.js";import"./chunk-QG6BXSNJ.js";import"./chunk-UCQ66N6M.js";import"./chunk-WWP2VXYJ.js";import"./chunk-SHWXADCI.js";import"./chunk-BBLWZT5I.js";import"./chunk-ELMUHNXN.js";import"./chunk-YBPCBFEE.js";import"./chunk-ZLCATRXI.js";import"./chunk-AYYDO52G.js";import"./chunk-ZIBW7CB4.js";import"./chunk-7D7XFZZI.js";import"./chunk-EVDYFGVH.js";import"./chunk-IZO6TPGX.js";import"./chunk-CWP4RMOM.js";import"./chunk-3K4YC3GC.js";import"./chunk-NP4CP3LR.js";import"./chunk-DVPGQG4W.js";import"./chunk-7WEHZCSK.js";import"./chunk-UJ6TMZC6.js";import"./chunk-IJP42OGW.js";import"./chunk-OE4B6LDZ.js";export{a as VisualSecurityTool};

package/dist/cli/chunks/{web-tree-sitter-MP6E6CJB.js → web-tree-sitter-MIYJSF2L.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.0");process.exit(0)}
-import"./chunk-ES7WCYOU.js";import{createRequire as t}from"module";var o=t(import.meta.url),e=o("web-tree-sitter"),i=e,{RuvectorLayer:n,TensorCompress:a,differentiableSearch:c,hierarchicalForward:s,getCompressionLevel:l,init:p,FlashAttention:m,DotProductAttention:u,MultiHeadAttention:d,HyperbolicAttention:A,LinearAttention:f,MoEAttention:h,SonaEngine:_,pipeline:b}=e||{};export{u as DotProductAttention,m as FlashAttention,A as HyperbolicAttention,f as LinearAttention,h as MoEAttention,d as MultiHeadAttention,n as RuvectorLayer,_ as SonaEngine,a as TensorCompress,i as default,c as differentiableSearch,l as getCompressionLevel,s as hierarchicalForward,p as init,b as pipeline};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import"./chunk-OE4B6LDZ.js";import{createRequire as t}from"module";var o=t(import.meta.url),e=o("web-tree-sitter"),i=e,{RuvectorLayer:n,TensorCompress:a,differentiableSearch:c,hierarchicalForward:s,getCompressionLevel:l,init:p,FlashAttention:m,DotProductAttention:u,MultiHeadAttention:d,HyperbolicAttention:A,LinearAttention:f,MoEAttention:h,SonaEngine:_,pipeline:b}=e||{};export{u as DotProductAttention,m as FlashAttention,A as HyperbolicAttention,f as LinearAttention,h as MoEAttention,d as MultiHeadAttention,n as RuvectorLayer,_ as SonaEngine,a as TensorCompress,i as default,c as differentiableSearch,l as getCompressionLevel,s as hierarchicalForward,p as init,b as pipeline};

package/dist/cli/chunks/{windsurf-installer-Z6BWMUUO.js → windsurf-installer-5TLZSQIJ.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.0");process.exit(0)}
-import{b as u}from"./chunk-NETN3OUG.js";import{a as f,c as d}from"./chunk-CYL2FV23.js";import"./chunk-ES7WCYOU.js";d();import{existsSync as i,mkdirSync as h,readFileSync as g,writeFileSync as a}from"fs";import{join as p,dirname as v}from"path";var c=class{projectRoot;overwrite;options;generator;constructor(e){this.projectRoot=e.projectRoot,this.overwrite=e.overwrite??!1,this.options=e,this.generator=u()}async install(){let e={success:!0,mcpConfigured:!1,rulesInstalled:!1,errors:[],configPath:"",rulesPath:""};try{let t=this.generator.generateMcpConfig("windsurf",{memoryBackend:this.options.memoryBackend}),r=p(this.projectRoot,t.path);if(e.configPath=r,!i(r)||this.overwrite){let o=v(r);if(i(o)||h(o,{recursive:!0}),i(r)&&this.overwrite){let m=this.mergeExistingConfig(r,t.content);a(r,m)}else a(r,t.content);e.mcpConfigured=!0}let s=this.generator.generateBehavioralRules("windsurf"),n=p(this.projectRoot,s.path);if(e.rulesPath=n,!i(n)||this.overwrite){if(i(n)&&this.overwrite){let o=this.mergeExistingRules(n,s.content);a(n,o)}else a(n,s.content);e.rulesInstalled=!0}}catch(t){e.success=!1,e.errors.push(`Windsurf installation failed: ${f(t)}`)}return e}mergeExistingConfig(e,t){try{let r=JSON.parse(g(e,"utf-8")),s=JSON.parse(t);return r.mcpServers||(r.mcpServers={}),Object.assign(r.mcpServers,s.mcpServers),JSON.stringify(r,null,2)+`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{b as u}from"./chunk-LSZZQ7H6.js";import{a as f,c as d}from"./chunk-AYYDO52G.js";import"./chunk-OE4B6LDZ.js";d();import{existsSync as i,mkdirSync as h,readFileSync as g,writeFileSync as a}from"fs";import{join as p,dirname as v}from"path";var c=class{projectRoot;overwrite;options;generator;constructor(e){this.projectRoot=e.projectRoot,this.overwrite=e.overwrite??!1,this.options=e,this.generator=u()}async install(){let e={success:!0,mcpConfigured:!1,rulesInstalled:!1,errors:[],configPath:"",rulesPath:""};try{let t=this.generator.generateMcpConfig("windsurf",{memoryBackend:this.options.memoryBackend}),r=p(this.projectRoot,t.path);if(e.configPath=r,!i(r)||this.overwrite){let o=v(r);if(i(o)||h(o,{recursive:!0}),i(r)&&this.overwrite){let m=this.mergeExistingConfig(r,t.content);a(r,m)}else a(r,t.content);e.mcpConfigured=!0}let s=this.generator.generateBehavioralRules("windsurf"),n=p(this.projectRoot,s.path);if(e.rulesPath=n,!i(n)||this.overwrite){if(i(n)&&this.overwrite){let o=this.mergeExistingRules(n,s.content);a(n,o)}else a(n,s.content);e.rulesInstalled=!0}}catch(t){e.success=!1,e.errors.push(`Windsurf installation failed: ${f(t)}`)}return e}mergeExistingConfig(e,t){try{let r=JSON.parse(g(e,"utf-8")),s=JSON.parse(t);return r.mcpServers||(r.mcpServers={}),Object.assign(r.mcpServers,s.mcpServers),JSON.stringify(r,null,2)+`
 `}catch{return t}}mergeExistingRules(e,t){try{let r=g(e,"utf-8");return r.includes("Agentic QE")||r.includes("fleet_init")?r:r.trimEnd()+`
 
 ---

package/dist/cli/chunks/witness-chain-I3K3WQID.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{a,b,c,d,e,f,g,h,i}from"./chunk-IBSBOHUX.js";import"./chunk-KW5NBORV.js";import"./chunk-UCQ66N6M.js";import"./chunk-WWP2VXYJ.js";import"./chunk-SHWXADCI.js";import"./chunk-BBLWZT5I.js";import"./chunk-ELMUHNXN.js";import"./chunk-YBPCBFEE.js";import"./chunk-ZLCATRXI.js";import"./chunk-AYYDO52G.js";import"./chunk-EVDYFGVH.js";import"./chunk-IZO6TPGX.js";import"./chunk-CWP4RMOM.js";import"./chunk-3K4YC3GC.js";import"./chunk-NP4CP3LR.js";import"./chunk-DVPGQG4W.js";import"./chunk-7WEHZCSK.js";import"./chunk-UJ6TMZC6.js";import"./chunk-IJP42OGW.js";import"./chunk-OE4B6LDZ.js";export{a as GENESIS_PREV_HASH,f as WitnessChain,i as _resetWitnessChainForTests,h as createWitnessChain,g as getWitnessChain,d as hashWith,e as serializeEntry,b as sha256,c as shake256};

package/dist/cli/chunks/{witness-chain-EFLTABBA.js → witness-chain-LTV7H2HM.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.0");process.exit(0)}
-import{a,b,c,d,e,f,g}from"./chunk-U2SW6KK5.js";import"./chunk-HVB2L52I.js";import"./chunk-OXXMVQDF.js";import"./chunk-3GSYD5SL.js";import"./chunk-ES7WCYOU.js";export{c as PersistentWitnessChain,a as SPRTAccumulator,b as WitnessChain,f as createPersistentWitnessChain,e as createWitnessChain,d as createWitnessChainSQLitePersistence,g as isWitnessChainFeatureEnabled};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{a,b,c,d,e,f,g}from"./chunk-AOMXMFDH.js";import"./chunk-BBLWZT5I.js";import"./chunk-ELMUHNXN.js";import"./chunk-IJP42OGW.js";import"./chunk-OE4B6LDZ.js";export{c as PersistentWitnessChain,a as SPRTAccumulator,b as WitnessChain,f as createPersistentWitnessChain,e as createWitnessChain,d as createWitnessChainSQLitePersistence,g as isWitnessChainFeatureEnabled};

package/dist/cli/chunks/{witness-key-manager-PN36TV43.js → witness-key-manager-PAJ2J4AL.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.0");process.exit(0)}
-import{a,b,c}from"./chunk-FUU32QY5.js";import"./chunk-NUQBJGGF.js";import"./chunk-ES7WCYOU.js";export{a as WitnessKeyManager,c as _resetDefaultWitnessKeyManagerForTests,b as getDefaultWitnessKeyManager};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{a,b,c}from"./chunk-KW5NBORV.js";import"./chunk-YBPCBFEE.js";import"./chunk-OE4B6LDZ.js";export{a as WitnessKeyManager,c as _resetDefaultWitnessKeyManagerForTests,b as getDefaultWitnessKeyManager};

package/dist/cli/chunks/{workflow-A2AX3RJU.js → workflow-DL3ESR2H.js}

@@ -1,5 +1,5 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.0");process.exit(0)}
-import"./chunk-DRIJYTSK.js";import{b as $}from"./chunk-7DMXCCSD.js";import{d as R}from"./chunk-YPTGE5NJ.js";import{b as k,c as C,d as b}from"./chunk-ZOXWASCC.js";import{c as W}from"./chunk-2DIT5AUU.js";import"./chunk-QI4CGJNK.js";import"./chunk-CYL2FV23.js";import"./chunk-ES7WCYOU.js";import{Command as O}from"commander";import o from"chalk";function P(d,a){let m=d.indexOf("=");return m>0&&(a[d.substring(0,m)]=d.substring(m+1)),a}function x(d,a,m){let y=new O("workflow").description("Manage QE workflows and pipelines (ADR-041)");return y.command("run <file>").description("Execute a QE pipeline from YAML file").option("-w, --watch","Watch execution progress").option("-v, --verbose","Show detailed output").option("--params <json>","Additional parameters as JSON","{}").action(async(t,l)=>{if(!await m())return;let e=await import("fs"),c=(await import("path")).resolve(t);try{console.log(o.blue(`
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import"./chunk-FQUUMC57.js";import{b as $}from"./chunk-ORDH4VPL.js";import{d as R}from"./chunk-WWCH5SSF.js";import{b as k,c as C,d as b}from"./chunk-6C3MZLYW.js";import{c as W}from"./chunk-ZLCATRXI.js";import"./chunk-GTPZVLL6.js";import"./chunk-AYYDO52G.js";import"./chunk-OE4B6LDZ.js";import{Command as O}from"commander";import o from"chalk";function P(d,a){let m=d.indexOf("=");return m>0&&(a[d.substring(0,m)]=d.substring(m+1)),a}function x(d,a,m){let y=new O("workflow").description("Manage QE workflows and pipelines (ADR-041)");return y.command("run <file>").description("Execute a QE pipeline from YAML file").option("-w, --watch","Watch execution progress").option("-v, --verbose","Show detailed output").option("--params <json>","Additional parameters as JSON","{}").action(async(t,l)=>{if(!await m())return;let e=await import("fs"),c=(await import("path")).resolve(t);try{console.log(o.blue(`
  Running workflow from: ${t}
 `));let s=k(c);if(!s.success||!s.workflow){console.log(o.red("Failed to parse pipeline:"));for(let w of s.errors)console.log(o.red(`   ${w}`));await a(1)}let r={...W(l.params,"params")};if(s.pipeline){for(let w of s.pipeline.stages)if(w.params)for(let[S,h]of Object.entries(w.params))r[S]=h}if(!d.workflowOrchestrator.getWorkflow(s.workflow.id)){let w=d.workflowOrchestrator.registerWorkflow(s.workflow);w.success||(console.log(o.red(`Failed to register workflow: ${w.error.message}`)),await a(1))}let n=await d.workflowOrchestrator.executeWorkflow(s.workflow.id,r);if(!n.success){console.log(o.red(`Failed to start workflow: ${n.error.message}`)),await a(1);return}let p=n.value;if(console.log(o.cyan(`  Execution ID: ${p}`)),console.log(o.gray(`  Workflow: ${s.workflow.name}`)),console.log(o.gray(`  Stages: ${s.workflow.steps.length}`)),console.log(""),l.watch){console.log(o.blue(`Workflow Progress:
 `));let w,S=Date.now();for(;;){let g=d.workflowOrchestrator.getWorkflowStatus(p);if(!g)break;if(!w||w.progress!==g.progress||w.status!==g.status||JSON.stringify(w.currentSteps)!==JSON.stringify(g.currentSteps)){process.stdout.write("\r\x1B[K");let v="\u2588".repeat(Math.floor(g.progress/5))+"\u2591".repeat(20-Math.floor(g.progress/5)),D=g.status==="completed"?o.green:g.status==="failed"?o.red:g.status==="running"?o.yellow:o.gray;console.log(`  [${v}] ${g.progress}% - ${D(g.status)}`),g.currentSteps.length>0&&l.verbose&&console.log(o.gray(`    Running: ${g.currentSteps.join(", ")}`)),w=g}if(g.status==="completed"||g.status==="failed"||g.status==="cancelled")break;await new Promise(v=>setTimeout(v,500))}let h=d.workflowOrchestrator.getWorkflowStatus(p);if(h){console.log("");let g=h.duration||Date.now()-S;h.status==="completed"?(console.log(o.green("Workflow completed successfully")),console.log(o.gray(`   Duration: ${$(g)}`)),console.log(o.gray(`   Completed: ${h.completedSteps.length} stages`)),h.skippedSteps.length>0&&console.log(o.yellow(`   Skipped: ${h.skippedSteps.length} stages`))):h.status==="failed"?(console.log(o.red("Workflow failed")),console.log(o.red(`   Error: ${h.error}`)),console.log(o.gray(`   Failed stages: ${h.failedSteps.join(", ")}`))):console.log(o.yellow(`Workflow ${h.status}`))}}else console.log(o.green("Workflow execution started")),console.log(o.gray(`   Use 'aqe workflow status ${p}' to check progress`));console.log(""),await a(0)}catch(s){console.error(o.red(`
@@ -35,10 +35,10 @@ Workflow cancelled: ${t}
 `)):console.log(o.red(`
 Failed to cancel workflow: ${l.error.message}
 `)),await a(l.success?0:1)}catch(l){console.error(o.red(`
-Failed to cancel workflow:`),l),await a(1)}}),y.command("browser-list").description("List available browser workflow templates").action(async()=>{try{let{BrowserWorkflowTool:t}=await import("./browser-workflow-MXS3ZKY2.js"),e=await new t().invoke({});if(e.success&&e.data){console.log(o.blue(`
+Failed to cancel workflow:`),l),await a(1)}}),y.command("browser-list").description("List available browser workflow templates").action(async()=>{try{let{BrowserWorkflowTool:t}=await import("./browser-workflow-5DZNIFUY.js"),e=await new t().invoke({});if(e.success&&e.data){console.log(o.blue(`
  Browser Workflow Templates:
 `));for(let u of e.data.availableTemplates)console.log(`  ${o.cyan(u)}`);console.log("")}else console.log(o.red(`Failed: ${e.error||"Unknown error"}`));await a(0)}catch(t){console.error(o.red(`
-Failed:`),t),await a(1)}}),y.command("browser-load [template]").description("Load and validate a browser workflow template or inline YAML").option("--yaml <yaml>","Inline YAML workflow definition").option("-v, --var <key=value>","Variable override (repeatable)",P,{}).option("-F, --format <format>","Output format (text|json)","text").option("-o, --output <path>","Write output to file").action(async(t,l)=>{try{let{BrowserWorkflowTool:e}=await import("./browser-workflow-MXS3ZKY2.js"),{writeOutput:u,toJSON:c}=await import("./ci-output-HD6IZNJA.js"),s=new e,f={variables:l.var||{}};if(l.yaml)f.workflowYaml=l.yaml;else if(t)if(t.endsWith(".yaml")||t.endsWith(".yml")){let i=await import("fs"),p=(await import("path")).resolve(t);i.existsSync(p)||(console.log(o.red(`
+Failed:`),t),await a(1)}}),y.command("browser-load [template]").description("Load and validate a browser workflow template or inline YAML").option("--yaml <yaml>","Inline YAML workflow definition").option("-v, --var <key=value>","Variable override (repeatable)",P,{}).option("-F, --format <format>","Output format (text|json)","text").option("-o, --output <path>","Write output to file").action(async(t,l)=>{try{let{BrowserWorkflowTool:e}=await import("./browser-workflow-5DZNIFUY.js"),{writeOutput:u,toJSON:c}=await import("./ci-output-HVOJC2KN.js"),s=new e,f={variables:l.var||{}};if(l.yaml)f.workflowYaml=l.yaml;else if(t)if(t.endsWith(".yaml")||t.endsWith(".yml")){let i=await import("fs"),p=(await import("path")).resolve(t);i.existsSync(p)||(console.log(o.red(`
 File not found: ${p}
 `)),await a(1)),f.workflowYaml=i.readFileSync(p,"utf-8")}else f.templateName=t;else console.log(o.red(`
 Provide a template name or --yaml. Use "workflow browser-list" to see templates.

package/dist/cli/chunks/workflow-orchestrator-MAALP4WA.js

@@ -0,0 +1,2 @@
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{a,b,c,d}from"./chunk-XN2CD5S6.js";import"./chunk-LTKNCYMO.js";import"./chunk-UCQ66N6M.js";import"./chunk-WWP2VXYJ.js";import"./chunk-SHWXADCI.js";import"./chunk-BBLWZT5I.js";import"./chunk-ELMUHNXN.js";import"./chunk-YBPCBFEE.js";import"./chunk-ZLCATRXI.js";import"./chunk-GTPZVLL6.js";import"./chunk-AYYDO52G.js";import"./chunk-ZIBW7CB4.js";import"./chunk-EVDYFGVH.js";import"./chunk-IZO6TPGX.js";import"./chunk-CWP4RMOM.js";import"./chunk-3K4YC3GC.js";import"./chunk-NP4CP3LR.js";import"./chunk-DVPGQG4W.js";import"./chunk-7WEHZCSK.js";import"./chunk-UJ6TMZC6.js";import"./chunk-IJP42OGW.js";import"./chunk-OE4B6LDZ.js";export{b as DEFAULT_WORKFLOW_CONFIG,a as WorkflowEvents,c as WorkflowOrchestrator,d as createWorkflowOrchestrator};

package/dist/cli/chunks/{wrappers-NA6FHA63.js → wrappers-5HSU665E.js}

@@ -1,2 +1,2 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.0");process.exit(0)}
-import{a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v as L,w as M,x as N}from"./chunk-HOKON5EL.js";import{a as v,b as w,c as x,d as y,e as z,f as A,g as B,h as C,i as D,j as E,k as F,l as G,m as H,n as I,o as J,p as K}from"./chunk-HTPM3URI.js";import"./chunk-G5DFYX3J.js";import"./chunk-W5YEIHIO.js";import"./chunk-BUGWPTMF.js";import"./chunk-HVB2L52I.js";import"./chunk-OXXMVQDF.js";import"./chunk-NUQBJGGF.js";import"./chunk-2DIT5AUU.js";import"./chunk-CYL2FV23.js";import"./chunk-SNTUKW4Q.js";import"./chunk-TVMFH5N2.js";import"./chunk-THBTN7XB.js";import"./chunk-RDU4WTV2.js";import"./chunk-LBE2P6UC.js";import"./chunk-IZRLIWFN.js";import"./chunk-AO7AHX6K.js";import"./chunk-YRQLVGCI.js";import"./chunk-3GSYD5SL.js";import"./chunk-ES7WCYOU.js";export{z as GNNLayerFactory,i as QEFlashAttention,x as QEGNNEmbeddingIndex,y as QEGNNIndexFactory,a as QESONA,e as QE_FLASH_ATTENTION_CONFIG,g as QE_PERFORMANCE_TARGETS,f as QE_SONA_CONFIG,A as TensorCompressionFactory,u as batchComputeAttention,K as batchDifferentiableSearch,M as checkRuvectorPackagesAvailable,c as createDomainQESONA,j as createQEFlashAttention,b as createQESONA,D as getDifferentiableSearch,F as getGetCompressionLevel,E as getHierarchicalForward,G as getInit,h as getOptimalBlockConfig,k as getQEFlashAttentionConfig,n as getRuvectorDotProductAttention,m as getRuvectorFlashAttention,p as getRuvectorHyperbolicAttention,B as getRuvectorLayer,q as getRuvectorLinearAttention,r as getRuvectorMoEAttention,o as getRuvectorMultiHeadAttention,L as getRuvectorPackageVersions,C as getTensorCompress,l as getWorkloadTypes,N as initAllRuvectorPackages,w as initGNN,d as isAttentionAvailable,v as isGNNAvailable,s as toFloat32Array,H as toFloat32ArrayGNN,J as toIEmbedding,t as toNumberArrayAttn,I as toNumberArrayGNN};
+import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.13.1");process.exit(0)}
+import{a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v as L,w as M,x as N}from"./chunk-V32MDID3.js";import{a as v,b as w,c as x,d as y,e as z,f as A,g as B,h as C,i as D,j as E,k as F,l as G,m as H,n as I,o as J,p as K}from"./chunk-P4Y3G6OB.js";import"./chunk-UCQ66N6M.js";import"./chunk-WWP2VXYJ.js";import"./chunk-SHWXADCI.js";import"./chunk-BBLWZT5I.js";import"./chunk-ELMUHNXN.js";import"./chunk-YBPCBFEE.js";import"./chunk-ZLCATRXI.js";import"./chunk-AYYDO52G.js";import"./chunk-EVDYFGVH.js";import"./chunk-IZO6TPGX.js";import"./chunk-CWP4RMOM.js";import"./chunk-3K4YC3GC.js";import"./chunk-NP4CP3LR.js";import"./chunk-DVPGQG4W.js";import"./chunk-7WEHZCSK.js";import"./chunk-UJ6TMZC6.js";import"./chunk-IJP42OGW.js";import"./chunk-OE4B6LDZ.js";export{z as GNNLayerFactory,i as QEFlashAttention,x as QEGNNEmbeddingIndex,y as QEGNNIndexFactory,a as QESONA,e as QE_FLASH_ATTENTION_CONFIG,g as QE_PERFORMANCE_TARGETS,f as QE_SONA_CONFIG,A as TensorCompressionFactory,u as batchComputeAttention,K as batchDifferentiableSearch,M as checkRuvectorPackagesAvailable,c as createDomainQESONA,j as createQEFlashAttention,b as createQESONA,D as getDifferentiableSearch,F as getGetCompressionLevel,E as getHierarchicalForward,G as getInit,h as getOptimalBlockConfig,k as getQEFlashAttentionConfig,n as getRuvectorDotProductAttention,m as getRuvectorFlashAttention,p as getRuvectorHyperbolicAttention,B as getRuvectorLayer,q as getRuvectorLinearAttention,r as getRuvectorMoEAttention,o as getRuvectorMultiHeadAttention,L as getRuvectorPackageVersions,C as getTensorCompress,l as getWorkloadTypes,N as initAllRuvectorPackages,w as initGNN,d as isAttentionAvailable,v as isGNNAvailable,s as toFloat32Array,H as toFloat32ArrayGNN,J as toIEmbedding,t as toNumberArrayAttn,I as toNumberArrayGNN};

package/dist/cli/handlers/init-handler.js

@@ -47,7 +47,7 @@ export class InitHandler {
             .option('--with-cline', 'Include Cline MCP config and custom QE mode')
             .option('--with-kilocode', 'Include Kilo Code MCP config and custom QE mode')
             .option('--with-roocode', 'Include Roo Code MCP config and custom QE mode')
-            .option('--with-codex', 'Include OpenAI Codex CLI MCP config and AGENTS.md')
+            .option('--with-codex', 'Include OpenAI Codex CLI MCP, AGENTS.md, hooks, and QE skills')
             .option('--with-windsurf', 'Include Windsurf MCP config and rules')
             .option('--with-continuedev', 'Include Continue.dev MCP config and rules')
             .option('--no-mcp', 'Skip MCP server config (MCP is enabled by default)')

package/dist/coordination/handlers/coverage-collection.d.ts

@@ -0,0 +1,161 @@
+/**
+ * Coverage collection and provenance (issue #569).
+ *
+ * Two things live here, and the distinction between them is the whole point:
+ *
+ *   1. **Measurement** — run real instrumentation and parse what it reports.
+ *   2. **Estimation** — a static guess from source shape, used only when no
+ *      instrumentation could run.
+ *
+ * Before #569 these were indistinguishable in the output. `coverage_analyze_sublinear`
+ * on a Rust crate reported `lineCoverage: 78.3 / branchCoverage: 100 /
+ * functionCoverage: 0` with `confidence: 0.7` attached to gaps that pointed at
+ * `#[cfg(test)]` blocks and at line numbers past end-of-file. Every one of those
+ * numbers came from a JS-shaped regex heuristic; none was a measurement. A caller
+ * had no way to tell.
+ *
+ * So: every collector returns a `CoverageProvenance` alongside the data, and
+ * estimation is labelled as estimation, at the source, all the way out to the
+ * caller.
+ */
+import type { CoverageData } from '../../domains/coverage-analysis/interfaces';
+/** How a set of coverage numbers was obtained. */
+export type CoverageMethod = 
+/** Parsed from an instrumented coverage report already on disk. */
+'instrumented-report'
+/** Produced by running `cargo llvm-cov` for this analysis. */
+ | 'cargo-llvm-cov'
+/** Static guess from source shape. NOT a measurement. */
+ | 'static-estimation';
+export interface CoverageProvenance {
+    method: CoverageMethod;
+    /**
+     * True when the numbers are a static guess rather than a measurement.
+     * Callers MUST NOT present an estimated result as measured coverage.
+     */
+    estimated: boolean;
+    /**
+     * True only when branch data was actually collected. When false, branch
+     * coverage must be reported as `null`/`n-a` — never as a percentage, and
+     * emphatically never as 100%.
+     */
+    branchDataCollected: boolean;
+    /** True when function-level data was actually collected. */
+    functionDataCollected: boolean;
+    /** Human-readable notes for the caller to surface. */
+    notes: string[];
+}
+export interface CollectedCoverage {
+    data: CoverageData;
+    provenance: CoverageProvenance;
+}
+/**
+ * Is the "never execute build tooling" kill-switch set?
+ *
+ * Measuring coverage means *running the project's own tests*, which means
+ * executing code from the analyzed repository: `npx vitest/jest/nyc` runs its
+ * test suite and npm lifecycle scripts, and `cargo llvm-cov` additionally
+ * compiles and runs `build.rs` and honors any `runner`/linker directive in that
+ * repo's `.cargo/config.toml`. For a trusted project — your own repo, CI on your
+ * own code — that is exactly what the caller wants and is how coverage has always
+ * been collected here.
+ *
+ * It is surprising, though, for an operation that reads like a static query, and
+ * an agent can be pointed at an untrusted checkout. `AQE_COVERAGE_NO_EXEC=1`
+ * disables execution entirely: already-present coverage reports are still parsed,
+ * and everything else degrades to clearly-labelled static estimation.
+ *
+ * Follows the same parsing convention as `AQE_LLM_ROUTER_DISABLED`.
+ */
+export declare function isCoverageExecDisabled(env?: NodeJS.ProcessEnv): boolean;
+/**
+ * Is this path test code rather than production code?
+ *
+ * #569 work item: "Exclude `tests/` files from 'uncovered production code'".
+ * Coverage *of* a test file is not a meaningful metric — reporting
+ * `tests/verifier_matrix.rs` at 79.2% with its own gap entry sends a developer
+ * to write tests for their tests.
+ *
+ * Erring in either direction costs something: a false negative reports test code
+ * as a production gap (the original bug), a false positive silently drops real
+ * production code from the denominator. Hence anchored patterns, not substrings.
+ */
+export declare function isTestPath(filePath: string, rootDir?: string): boolean;
+/**
+ * Line ranges occupied by inline test code, 1-indexed and inclusive.
+ *
+ * Rust puts unit tests in the same file as the code under test, inside a
+ * `#[cfg(test)] mod tests { ... }` block. #569's first and worst symptom was
+ * exactly this: gap `gap-…-0` flagged `src/jwks.rs` 335–449 as "Missing test
+ * case", where line 335 is an `assert!` inside a *passing* test.
+ *
+ * Brace-matched rather than "assume the block runs to EOF", because a
+ * `#[cfg(test)]` module is not always last in the file.
+ */
+export declare function findInlineTestRanges(content: string, ext: string): Array<[number, number]>;
+/**
+ * Effective line count for a file.
+ *
+ * #569 work item: "Never emit a line number beyond the file's length."
+ * `content.split('\n')` on a file with a trailing newline yields one extra
+ * empty element — which is how a 448-line `jwks.rs` produced a gap ending at
+ * line 449, and a 292-line `verify.rs` one ending at 293.
+ */
+export declare function countLines(content: string): number;
+/**
+ * Find the Rust crate/workspace root for a target, or null if there isn't one.
+ *
+ * Walks UP from the target rather than only checking the target itself: the
+ * common invocation is `analyze(target: "src/")` or a package subdirectory, and
+ * `Cargo.toml` lives at the crate root. Checking only the target meant every
+ * such call silently skipped real instrumentation and fell through to labelled
+ * estimation — a measurement quietly downgraded to a guess.
+ *
+ * Bounded to `maxDepth` ancestors so a stray target can't walk to `/`.
+ */
+export declare function findCargoRoot(targetPath: string, maxDepth?: number): string | null;
+/**
+ * Does this target belong to a Rust crate/workspace *and* actually contain Rust
+ * code?
+ *
+ * Both halves are load-bearing. Without the upward walk, `analyze(target:"src/")`
+ * on a crate skips instrumentation. Without the `.rs` check, a polyglot monorepo
+ * with a `Cargo.toml` at its root would route `analyze(target:"frontend/")`
+ * through `cargo llvm-cov` and return whole-crate Rust coverage for a
+ * TypeScript directory.
+ */
+export declare function isRustProject(targetPath: string): boolean;
+/**
+ * Run `cargo llvm-cov` and parse its LCOV output.
+ *
+ * #569 work item: "Detect language and delegate to real instrumentation where
+ * available." LCOV rather than `--json`: it carries per-line `DA:` records (so
+ * we get genuine uncovered line numbers for gap detection) plus `BRF:`/`BRH:`
+ * and `FNF:`/`FNH:`, and it reuses `parseLcovInfo`, which is already exercised
+ * by the JS path.
+ *
+ * Returns `null` — never throws, never guesses — when cargo or the
+ * `cargo-llvm-cov` subcommand is unavailable or the run fails. The caller then
+ * decides whether to estimate (and label it) or report nothing.
+ */
+export declare function collectRustCoverage(targetPath: string, options?: {
+    timeoutMs?: number;
+}): Promise<CollectedCoverage | null>;
+/**
+ * Static coverage estimate from source shape, for when no instrumentation could
+ * be run.
+ *
+ * This is a *guess*. It is returned with `estimated: true` and
+ * `branchDataCollected: false` so no caller can mistake it for a measurement —
+ * which is the core of #569, where a caller had "no signal that no
+ * instrumentation ran".
+ *
+ * Fixed here relative to the pre-#569 version:
+ *   - trailing-newline off-by-one no longer emits line numbers past EOF
+ *   - `#[cfg(test)]` blocks and `tests/` files are excluded from both the
+ *     denominator and the gap list
+ *   - declaration counting is language-aware instead of JS-shaped
+ *   - branch counts are reported as uncollected rather than invented
+ */
+export declare function buildEstimatedCoverage(targetPath: string): CollectedCoverage | null;
+//# sourceMappingURL=coverage-collection.d.ts.map