agentic-qe 3.12.0 → 3.12.1

package/dist/init/settings-merge.d.ts

@@ -8,6 +8,18 @@
  * - Generates full env vars and v3 settings sections
  */
 import type { AQEInitConfig } from './types.js';
+/**
+ * Create a one-time `.backup` of an existing settings.json before AQE modifies
+ * it — mirroring the CLAUDE.md backup convention.
+ *
+ * The backup captures the pristine, pre-AQE file and is NOT overwritten on
+ * subsequent re-inits, so the user's original settings are always recoverable.
+ * No-op when the file does not exist yet (fresh install) or a backup already
+ * exists. Failures are swallowed — a backup problem must never block init.
+ *
+ * @returns the backup path when a backup was written, otherwise null.
+ */
+export declare function backupSettingsFile(settingsPath: string): string | null;
 /**
  * Check if a single hook entry belongs to AQE (any variant).
  * Matches commands containing 'aqe' or 'agentic-qe' in any form.
@@ -23,10 +35,42 @@ export declare function isAqeHookEntry(entry: unknown): boolean;
  * 3. Preserve any hook types not in the new config
  */
 export declare function mergeHooksSmart(existingHooks: Record<string, unknown[]>, newAqeHooks: Record<string, unknown[]>): Record<string, unknown[]>;
+/**
+ * Merge AQE's environment variables into a user's existing `env` block WITHOUT
+ * clobbering values the user already set — including AQE_-prefixed ones.
+ *
+ * Re-running `aqe init` fills in any missing AQE env vars but leaves every
+ * existing value untouched, so a user who intentionally flipped, say,
+ * `AQE_LEARNING_ENABLED=false` keeps their choice. Non-AQE env vars are always
+ * preserved. Returns a new object; inputs are not mutated.
+ */
+export declare function mergeAqeEnv(existingEnv: Record<string, string> | undefined, aqeEnv: Record<string, string>): Record<string, string>;
 /**
  * Generate the full set of AQE environment variables for settings.json.
  */
 export declare function generateAqeEnvVars(config: AQEInitConfig): Record<string, string>;
+/**
+ * Detect whether a `statusLine` block is one AQE generated (vs. a user's own).
+ * AQE's status line invokes the statusline-v3.cjs helper (or falls back to the
+ * "Agentic QE v3" banner). Anything else is treated as user-owned and preserved.
+ */
+export declare function isAqeStatusLine(statusLine: unknown): boolean;
+/**
+ * Apply the generated v3 settings sections onto an existing settings object
+ * WITHOUT clobbering configuration the user already set:
+ *
+ * - `_aqePermissions`: union-merge into `permissions.allow`, preserving the
+ *   user's existing allow/deny entries (#362).
+ * - `statusLine`: generic Claude Code setting — only written when absent or when
+ *   the existing one is AQE's own (so a user's custom status line is preserved).
+ * - `includeCoAuthoredBy`: generic Claude Code setting — only written when the
+ *   user has not set it explicitly (respects an intentional `false`).
+ * - `aqe` / `v3Configuration` / `v3Learning`: AQE-owned sections, deep-merged so
+ *   AQE values are refreshed while any user-added keys survive.
+ *
+ * Mutates and returns `settings`.
+ */
+export declare function applyV3Sections(settings: Record<string, unknown>, sections: Record<string, unknown>): Record<string, unknown>;
 /**
  * Generate v3-specific settings sections for settings.json.
  * These sections enable the self-learning system, status line, and permissions.

package/dist/init/settings-merge.js

@@ -7,16 +7,49 @@
  * - Preserves non-AQE hooks from the user's config
  * - Generates full env vars and v3 settings sections
  */
-// Patterns that identify a hook command as belonging to AQE
+import { existsSync, readFileSync, writeFileSync } from 'fs';
+/**
+ * Create a one-time `.backup` of an existing settings.json before AQE modifies
+ * it — mirroring the CLAUDE.md backup convention.
+ *
+ * The backup captures the pristine, pre-AQE file and is NOT overwritten on
+ * subsequent re-inits, so the user's original settings are always recoverable.
+ * No-op when the file does not exist yet (fresh install) or a backup already
+ * exists. Failures are swallowed — a backup problem must never block init.
+ *
+ * @returns the backup path when a backup was written, otherwise null.
+ */
+export function backupSettingsFile(settingsPath) {
+    if (!existsSync(settingsPath))
+        return null;
+    const backupPath = `${settingsPath}.backup`;
+    if (existsSync(backupPath))
+        return null; // keep the pristine original
+    try {
+        writeFileSync(backupPath, readFileSync(settingsPath, 'utf-8'), 'utf-8');
+        return backupPath;
+    }
+    catch {
+        return null;
+    }
+}
+// Patterns that identify a hook command as belonging to AQE.
+//
+// These MUST be specific to AQE's own hooks. They must NOT match hooks that
+// other tools install (e.g. ruflo / claude-flow), otherwise re-running
+// `aqe init` in a project that already ran `ruflo init` would strip the user's
+// ruflo hooks. In particular:
+//   - do NOT match on `.claude/helpers/` broadly — ruflo's hook-handler.cjs and
+//     auto-memory-hook.mjs live there too (match AQE's own helpers by name)
+//   - do NOT match on `ruflo` — those are the user's hooks, preserve them
 const AQE_COMMAND_PATTERNS = [
     /\baqe\b/i,
     /\bagentic-qe\b/i,
     /\bnpx\s+agentic-qe\b/i,
     /\bnpx\s+@anthropics\/agentic-qe\b/i,
+    /aqe-hook\.cjs/i,
     /brain-checkpoint\.cjs/i,
-    /\.claude\/helpers\//i,
-    /\bruflo\b/i,
-    /dist\/cli\/bundle\.js/i,
+    /statusline-v3\.cjs/i,
 ];
 /**
  * Check if a single hook entry belongs to AQE (any variant).
@@ -62,6 +95,19 @@ export function mergeHooksSmart(existingHooks, newAqeHooks) {
     }
     return merged;
 }
+/**
+ * Merge AQE's environment variables into a user's existing `env` block WITHOUT
+ * clobbering values the user already set — including AQE_-prefixed ones.
+ *
+ * Re-running `aqe init` fills in any missing AQE env vars but leaves every
+ * existing value untouched, so a user who intentionally flipped, say,
+ * `AQE_LEARNING_ENABLED=false` keeps their choice. Non-AQE env vars are always
+ * preserved. Returns a new object; inputs are not mutated.
+ */
+export function mergeAqeEnv(existingEnv, aqeEnv) {
+    // AQE defaults first, then existing values win on any key collision.
+    return { ...aqeEnv, ...(existingEnv || {}) };
+}
 /**
  * Generate the full set of AQE environment variables for settings.json.
  */
@@ -85,6 +131,75 @@ export function generateAqeEnvVars(config) {
         AQE_V3_SUCCESS_RATE_THRESHOLD: String(config.learning?.qualityThreshold ?? 0.7),
     };
 }
+/**
+ * Detect whether a `statusLine` block is one AQE generated (vs. a user's own).
+ * AQE's status line invokes the statusline-v3.cjs helper (or falls back to the
+ * "Agentic QE v3" banner). Anything else is treated as user-owned and preserved.
+ */
+export function isAqeStatusLine(statusLine) {
+    const cmd = statusLine?.command;
+    return typeof cmd === 'string' && /statusline-v3\.cjs|Agentic QE v3/.test(cmd);
+}
+/**
+ * Deep-merge `source` (AQE-owned values) onto `target` (whatever the user has):
+ * plain-object subtrees merge recursively so a user's extra keys survive, while
+ * AQE's values win on conflicting leaves. Arrays and primitives are replaced by
+ * the AQE value (these sections are AQE-managed).
+ */
+function deepMergeOwned(target, source) {
+    if (!isPlainObject(target) || !isPlainObject(source))
+        return source;
+    const out = { ...target };
+    for (const [key, value] of Object.entries(source)) {
+        out[key] = deepMergeOwned(out[key], value);
+    }
+    return out;
+}
+function isPlainObject(value) {
+    return typeof value === 'object' && value !== null && !Array.isArray(value);
+}
+/**
+ * Apply the generated v3 settings sections onto an existing settings object
+ * WITHOUT clobbering configuration the user already set:
+ *
+ * - `_aqePermissions`: union-merge into `permissions.allow`, preserving the
+ *   user's existing allow/deny entries (#362).
+ * - `statusLine`: generic Claude Code setting — only written when absent or when
+ *   the existing one is AQE's own (so a user's custom status line is preserved).
+ * - `includeCoAuthoredBy`: generic Claude Code setting — only written when the
+ *   user has not set it explicitly (respects an intentional `false`).
+ * - `aqe` / `v3Configuration` / `v3Learning`: AQE-owned sections, deep-merged so
+ *   AQE values are refreshed while any user-added keys survive.
+ *
+ * Mutates and returns `settings`.
+ */
+export function applyV3Sections(settings, sections) {
+    for (const [key, value] of Object.entries(sections)) {
+        if (key === '_aqePermissions') {
+            const existingPerms = settings.permissions || {};
+            const existingAllow = existingPerms.allow || [];
+            const merged = [...new Set([...existingAllow, ...value])];
+            settings.permissions = { ...existingPerms, allow: merged };
+        }
+        else if (key === 'statusLine') {
+            // Preserve a user's (or another tool's) custom status line.
+            if (settings.statusLine === undefined || isAqeStatusLine(settings.statusLine)) {
+                settings.statusLine = value;
+            }
+        }
+        else if (key === 'includeCoAuthoredBy') {
+            // Respect an explicit user choice; only set the default when unset.
+            if (settings.includeCoAuthoredBy === undefined) {
+                settings.includeCoAuthoredBy = value;
+            }
+        }
+        else {
+            // AQE-owned section — deep-merge so user additions are not dropped.
+            settings[key] = deepMergeOwned(settings[key], value);
+        }
+    }
+    return settings;
+}
 /**
  * Generate v3-specific settings sections for settings.json.
  * These sections enable the self-learning system, status line, and permissions.

package/dist/mcp/bundle.js

@@ -6080,7 +6080,7 @@ ${i.errors.join(`
     ORDER BY ended_at DESC
     LIMIT ?
   `).all(yAe);if(i.length===0)return;let s=r.prepare("UPDATE qe_trajectories SET feedback = ? WHERE id = ?");for(let a of i)try{let c=await vAe(a,o,e);c&&s.run(JSON.stringify(c),a.id)}catch{}}async function vAe(o,e,t){let r=["You are a quality engineering judge scoring a completed task trajectory.","",`Task: ${o.task.slice(0,400)}`,`Agent: ${o.agent??"unknown"}`,`Domain: ${o.domain??"general"}`,`Outcome: ${o.success?"success":"failure"}`,"",'Respond ONLY with JSON: {"quality": 0..1, "reasoning": "\u2264120 chars", "improvement": "\u2264120 chars or omit"}.'].join(`
-`),n=await fetch(`${t}/v1/messages`,{method:"POST",headers:{"content-type":"application/json","x-api-key":e,"anthropic-version":"2023-06-01"},body:JSON.stringify({model:hAe,max_tokens:fAe,messages:[{role:"user",content:r}]})});if(!n.ok)return null;let s=(await n.json()).content?.[0]?.text;if(!s)return null;let a=s.match(/\{[\s\S]*\}/);if(!a)return null;try{let c=JSON.parse(a[0]);return typeof c.quality!="number"||typeof c.reasoning!="string"?null:{quality:Math.max(0,Math.min(1,c.quality)),reasoning:c.reasoning.slice(0,200),improvement:typeof c.improvement=="string"?c.improvement.slice(0,200):void 0}}catch{return null}}var hAe,fAe,yAe,WZ=v(()=>{"use strict";Y();hAe="claude-haiku-4-5-20251001",fAe=200,yAe=5});var J$={};j(J$,{handleModelRoute:()=>t0,handleReasoningBankStats:()=>wAe,handleRoutingEconomics:()=>n0,handleRoutingMetrics:()=>r0,handleTaskCancel:()=>ZR,handleTaskList:()=>JR,handleTaskOrchestrate:()=>e0,handleTaskOutcomeRecord:()=>SAe,handleTaskStatus:()=>YR,handleTaskStatusWithLearning:()=>EAe,handleTaskSubmit:()=>XR,subscribeTrajectoryEvents:()=>RAe,unsubscribeTrajectoryEvents:()=>KZ});async function XR(o){if(!ge())return{success:!1,error:"Fleet not initialized. 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Call fleet_init first."};let{queen:e,workflowOrchestrator:t}=ye();try{let r=o.context?.project||QZ(o.task),n=o.priority==="critical"||/\b(security|vulnerability|cve|owasp|critical|production|exploit)\b/i.test(o.task),s=await(await $s()).routeTask({task:o.task,codeContext:o.codeContext,filePaths:o.filePaths,manualTier:o.manualTier,isCritical:n,agentType:`qe-${r}`,domain:r,metadata:{inferredDomain:r,hasCodeContext:!!o.codeContext,fileCount:o.filePaths?.length}}),a=await On(),c=await a.getExperienceGuidance(o.task,o.context?.project),l=await a.searchPatterns(o.task,{limit:5,domain:o.context?.project??r}).catch(()=>[]),u=CAe(o.task),d=TAe(o.priority||"medium"),p=bAe[u];if(p&&t){console.log(`[TaskOrchestrate] Task type '${u}' has workflow '${p}' - executing workflow`);let y=o.task.match(/https?:\/\/[^\s]+/i),b=y?y[0]:void 0;b&&console.log(`[TaskOrchestrate] Detected URL for analysis: ${b}`);let C={targetId:o.context?.project||b||`task-${Date.now()}`,targetType:b?"website":"epic",description:o.task,acceptanceCriteria:o.context?.requirements||[],url:b,routing:{tier:s.decision.tier,modelId:s.modelId,executionStrategy:s.executionStrategy,complexity:s.decision.complexityAnalysis.overall},patternHints:l.length>0?l.map(A=>({patternId:A.id,name:A.name,description:A.description,confidence:A.confidence,similarity:A.qualityScore,canReuse:A.tier==="long-term"})):void 0},E=await t.executeWorkflow(p,C);return E.success?{success:!0,data:{taskId:E.value,type:u,priority:d,strategy:o.strategy||"adaptive",status:"workflow-started",message:`Workflow '${p}' started for task: ${o.task}`,routing:{tier:s.decision.tier,tierName:s.tierInfo.name,modelId:s.modelId,executionStrategy:s.executionStrategy,complexity:s.decision.complexityAnalysis.overall,confidence:s.decision.confidence,useAgentBooster:s.useAgentBooster,rationale:s.decision.rationale,decisionTimeMs:s.decision.metadata.decisionTimeMs}}}:{success:!1,error:`Workflow execution failed: ${E.error.message}`}}let m={description:o.task,strategy:o.strategy||"adaptive",maxAgents:o.maxAgents,context:o.context};u==="generate-tests"&&(m.sourceFiles=o.filePaths||[],m.sourceCode=o.codeContext||"",m.language=m.language||"typescript",m.testType=m.testType||"unit");let g=await e.submitTask({type:u,priority:d,targetDomains:[],payload:{...m,routing:{tier:s.decision.tier,modelId:s.modelId,executionStrategy:s.executionStrategy,useAgentBooster:s.useAgentBooster,agentBoosterTransform:s.decision.agentBoosterTransform,complexity:s.decision.complexityAnalysis.overall,confidence:s.decision.confidence},experienceGuidance:c?{strategy:c.recommendedStrategy,actions:c.suggestedActions,confidence:c.confidence,tokenSavings:c.estimatedTokenSavings}:void 0,patternHints:l.length>0?l.map(y=>({patternId:y.id,name:y.name,description:y.description,confidence:y.confidence,similarity:y.qualityScore,canReuse:y.tier==="long-term"})):void 0},timeout:6e5});if(!g.success)return{success:!1,error:g.error.message};let h=g.value;return await Q$(h,o.task,{agent:"queen-coordinator",domain:o.context?.project}),process.env.AQE_TRAJECTORY_JUDGE==="1"&&process.env.ANTHROPIC_API_KEY&&HZ().catch(y=>{console.warn("[TrajectoryJudge] failed:",y instanceof Error?y.message:y)}),{success:!0,data:{taskId:h,type:u,priority:d,strategy:o.strategy||"adaptive",status:"submitted",message:`Task orchestrated: ${o.task}${c?" 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agentic-qe",
-  "version": "3.12.0",
+  "version": "3.12.1",
   "description": "Agentic Quality Engineering V3 - Domain-Driven Design Architecture with 13 Bounded Contexts, O(log n) coverage analysis, ReasoningBank learning, 60 specialized QE agents, mathematical Coherence verification, deep Claude Flow integration",
   "type": "module",
   "main": "./dist/index.js",

package/dist/cli/chunks/adapter-6IWRIHF3.js

@@ -1,2 +0,0 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.12.0");process.exit(0)}
-import{a,b,c}from"./chunk-WJYTLRA5.js";import"./chunk-IKVNYK7Y.js";import"./chunk-OHSVDMF7.js";import"./chunk-K5SN66B4.js";import"./chunk-RHC7TFPU.js";import"./chunk-3AFNXU45.js";export{a as AgentBoosterAdapter,b as createAgentBoosterAdapter,c as createAgentBoosterAdapterSync};

package/dist/cli/chunks/aqe-learning-engine-FSF5U67K.js

@@ -1,2 +0,0 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.12.0");process.exit(0)}
-import{a,b,c,d,e,f}from"./chunk-O3C5RRDQ.js";import"./chunk-G6RKUEGL.js";import"./chunk-GCF42L7M.js";import"./chunk-5YGESYBC.js";import"./chunk-5VBPIJUZ.js";import"./chunk-KDLYTJ5C.js";import"./chunk-36MPDANH.js";import"./chunk-VMP4M5PB.js";import"./chunk-WT4ZDDFM.js";import"./chunk-FI5SSLEF.js";import"./chunk-NW7G57NR.js";import"./chunk-XEYW3V5I.js";import"./chunk-CC5G3K4X.js";import"./chunk-Z3W3R4CW.js";import"./chunk-VZ67ZDB3.js";import"./chunk-C4SZSPXY.js";import"./chunk-SSXAW3ER.js";import"./chunk-MDT3LIXS.js";import"./chunk-TJEJ4UVX.js";import"./chunk-L5ZLOW3K.js";import"./chunk-K5SN66B4.js";import"./chunk-BB4OVXWF.js";import"./chunk-PT3FTGKZ.js";import"./chunk-GGMQOEZZ.js";import"./chunk-W2OMW6UU.js";import"./chunk-7ZIVDGSN.js";import"./chunk-RHC7TFPU.js";import"./chunk-6JNNZGI2.js";import"./chunk-UVVKFBF7.js";import"./chunk-YKOTOCO6.js";import"./chunk-FZIHOMGY.js";import"./chunk-KJWQ7ENF.js";import"./chunk-V2MD5EDD.js";import"./chunk-64M3FFM4.js";import"./chunk-AEX75YGI.js";import"./chunk-27JCWG5J.js";import"./chunk-2KHDGC7N.js";import"./chunk-3AFNXU45.js";export{b as AQELearningEngine,a as DEFAULT_ENGINE_CONFIG,c as DEFAULT_META_LEARNING_CONFIG,d as MetaLearningEngine,e as createAQELearningEngine,f as createDefaultLearningEngine};

package/dist/cli/chunks/base-2CKCJU3O.js

@@ -1,2 +0,0 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.12.0");process.exit(0)}
-import{a,b,c,d,e,f,g,h,i,j,k,l}from"./chunk-7WX3MKRS.js";import"./chunk-4SALW7OT.js";import"./chunk-C4SZSPXY.js";import"./chunk-SSXAW3ER.js";import"./chunk-MDT3LIXS.js";import"./chunk-TJEJ4UVX.js";import"./chunk-L5ZLOW3K.js";import"./chunk-K5SN66B4.js";import"./chunk-W2OMW6UU.js";import"./chunk-RHC7TFPU.js";import"./chunk-6JNNZGI2.js";import"./chunk-TJ6N4CCX.js";import"./chunk-UVVKFBF7.js";import"./chunk-YKOTOCO6.js";import"./chunk-FZIHOMGY.js";import"./chunk-KJWQ7ENF.js";import"./chunk-V2MD5EDD.js";import"./chunk-64M3FFM4.js";import"./chunk-AEX75YGI.js";import"./chunk-27JCWG5J.js";import"./chunk-2KHDGC7N.js";import"./chunk-3AFNXU45.js";export{l as MCPToolBase,k as defaultToolLogger,j as getKernel,i as getLLMRouter,e as getMemoryBackend,g as getSharedLLMRouter,c as getSharedMemoryBackend,a as isMemoryOnlyMode,b as registerRvfResetFn,h as resetSharedLLMRouter,d as resetSharedMemoryBackend,f as setSharedLLMRouter};

package/dist/cli/chunks/browser-workflow-UGYJE64S.js

@@ -1,2 +0,0 @@
-import{createRequire as __cr}from"module";const require=__cr(import.meta.url);if(process.argv.includes('--version')||process.argv.includes('-v')){console.log("3.12.0");process.exit(0)}
-import{a}from"./chunk-FEEMJDUF.js";import"./chunk-7WX3MKRS.js";import"./chunk-4SALW7OT.js";import"./chunk-C4SZSPXY.js";import"./chunk-SSXAW3ER.js";import"./chunk-MDT3LIXS.js";import"./chunk-TJEJ4UVX.js";import"./chunk-L5ZLOW3K.js";import"./chunk-K5SN66B4.js";import"./chunk-W2OMW6UU.js";import"./chunk-RHC7TFPU.js";import"./chunk-6JNNZGI2.js";import"./chunk-TJ6N4CCX.js";import"./chunk-UVVKFBF7.js";import"./chunk-YKOTOCO6.js";import"./chunk-FZIHOMGY.js";import"./chunk-KJWQ7ENF.js";import"./chunk-V2MD5EDD.js";import"./chunk-64M3FFM4.js";import"./chunk-AEX75YGI.js";import"./chunk-27JCWG5J.js";import"./chunk-2KHDGC7N.js";import"./chunk-3AFNXU45.js";export{a as BrowserWorkflowTool};