agentic-qe 1.4.0 → 1.4.2

package/dist/utils/Database.d.ts.map

@@ -1 +1 @@
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package/dist/utils/Database.js

@@ -277,8 +277,9 @@ class Database {
         reward REAL NOT NULL,
         next_state TEXT NOT NULL,
         episode_id TEXT,
-        timestamp DATETIME DEFAULT CURRENT_TIMESTAMP,
-        FOREIGN KEY (task_id) REFERENCES tasks (id) ON DELETE SET NULL
+        timestamp DATETIME DEFAULT CURRENT_TIMESTAMP
+        -- NOTE: No FK constraint on task_id - learning is independent of fleet tasks
+        -- task_id is kept for correlation/analytics but doesn't require task to exist in DB
       )`,
             // Learning history for Q-Learning
             `CREATE TABLE IF NOT EXISTS learning_history (
@@ -357,8 +358,20 @@ class Database {
             'CREATE INDEX IF NOT EXISTS idx_learning_metrics_type ON learning_metrics (metric_type)',
             'CREATE INDEX IF NOT EXISTS idx_learning_metrics_timestamp ON learning_metrics (timestamp)'
         ];
+        // Create indexes - skip if column doesn't exist (for schema compatibility)
         for (const index of indexes) {
-            await this.exec(index);
+            try {
+                await this.exec(index);
+            }
+            catch (error) {
+                // Log warning but continue - index might reference tables from other schema managers
+                if (error.message && error.message.includes('no such column')) {
+                    this.logger.warn(`Skipping index creation: ${error.message}`);
+                }
+                else {
+                    throw error;
+                }
+            }
         }
         this.logger.info('Database tables and indexes created successfully');
     }
@@ -616,7 +629,7 @@ class Database {
     async getLearningStatistics(agentId) {
         const [experiencesRow, avgRewardRow, qTableRow] = await Promise.all([
             this.get('SELECT COUNT(*) as count FROM learning_experiences WHERE agent_id = ?', [agentId]),
-            this.get('SELECT AVG(reward) as avg FROM learning_experiences WHERE agent_id = ? AND timestamp > datetime("now", "-7 days")', [agentId]),
+            this.get("SELECT AVG(reward) as avg FROM learning_experiences WHERE agent_id = ? AND timestamp > datetime('now', '-7 days')", [agentId]),
             this.get('SELECT COUNT(*) as count FROM q_values WHERE agent_id = ?', [agentId])
         ]);
         // Calculate recent improvement

package/dist/utils/Database.js.map

@@ -1 +1 @@
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package/dist/utils/__mocks__/Logger.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"Logger.d.ts","sourceRoot":"","sources":["../../../src/utils/__mocks__/Logger.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,oBAAY,QAAQ;IAClB,KAAK,UAAU;IACf,IAAI,SAAS;IACb,IAAI,SAAS;IACb,KAAK,UAAU;CAChB;AAED,qBAAa,MAAM;IACjB,OAAO,CAAC,MAAM,CAAC,YAAY,CAAuB;IAElD,MAAM,CAAC,WAAW,IAAI,MAAM;IAO5B,MAAM,CAAC,aAAa,IAAI,IAAI;IAI5B,IAAI,2BAAa;IACjB,IAAI,2BAAa;IACjB,KAAK,2BAAa;IAClB,KAAK,2BAAa;IAClB,GAAG,2BAAa;IAChB,QAAQ,2BAAa;IACrB,QAAQ,2BAAqC;IAC7C,KAAK,0BAEF;CACJ"}
+{"version":3,"file":"Logger.d.ts","sourceRoot":"","sources":["../../../src/utils/__mocks__/Logger.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,oBAAY,QAAQ;IAClB,KAAK,UAAU;IACf,IAAI,SAAS;IACb,IAAI,SAAS;IACb,KAAK,UAAU;CAChB;AAED,qBAAa,MAAM;IACjB,OAAO,CAAC,MAAM,CAAC,YAAY,CAAuB;IAElD,MAAM,CAAC,WAAW,IAAI,MAAM;IAS5B,MAAM,CAAC,aAAa,IAAI,IAAI;IAI5B,IAAI,2BAAa;IACjB,IAAI,2BAAa;IACjB,KAAK,2BAAa;IAClB,KAAK,2BAAa;IAClB,GAAG,2BAAa;IAChB,QAAQ,2BAAa;IACrB,QAAQ,2BAAqC;IAC7C,KAAK,0BAEF;CACJ"}

package/dist/utils/__mocks__/Logger.js

@@ -28,8 +28,10 @@ class Logger {
         });
     }
     static getInstance() {
+        console.log('[MOCK] Logger.getInstance() called');
         if (!Logger.mockInstance) {
             Logger.mockInstance = new Logger();
+            console.log('[MOCK] Created new Logger mock instance');
         }
         return Logger.mockInstance;
     }

package/dist/utils/__mocks__/Logger.js.map

@@ -1 +1 @@
-{"version":3,"file":"Logger.js","sourceRoot":"","sources":["../../../src/utils/__mocks__/Logger.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAEH,IAAY,QAKX;AALD,WAAY,QAAQ;IAClB,2BAAe,CAAA;IACf,yBAAa,CAAA;IACb,yBAAa,CAAA;IACb,2BAAe,CAAA;AACjB,CAAC,EALW,QAAQ,wBAAR,QAAQ,QAKnB;AAED,MAAa,MAAM;IAAnB;QAcE,SAAI,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QACjB,SAAI,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QACjB,UAAK,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QAClB,UAAK,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QAClB,QAAG,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QAChB,aAAQ,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QACrB,aAAQ,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,MAAM,CAAC,CAAC;QAC7C,UAAK,GAAG,IAAI,CAAC,EAAE,CAAC;YACd,OAAO,IAAI,CAAC;QACd,CAAC,CAAC,CAAC;IACL,CAAC;IArBC,MAAM,CAAC,WAAW;QAChB,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAC;YACzB,MAAM,CAAC,YAAY,GAAG,IAAI,MAAM,EAAE,CAAC;QACrC,CAAC;QACD,OAAO,MAAM,CAAC,YAAY,CAAC;IAC7B,CAAC;IAED,MAAM,CAAC,aAAa;QAClB,MAAM,CAAC,YAAY,GAAG,IAAI,CAAC;IAC7B,CAAC;;AAZH,wBAwBC;AAvBgB,mBAAY,GAAkB,IAAI,AAAtB,CAAuB"}
+{"version":3,"file":"Logger.js","sourceRoot":"","sources":["../../../src/utils/__mocks__/Logger.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAEH,IAAY,QAKX;AALD,WAAY,QAAQ;IAClB,2BAAe,CAAA;IACf,yBAAa,CAAA;IACb,yBAAa,CAAA;IACb,2BAAe,CAAA;AACjB,CAAC,EALW,QAAQ,wBAAR,QAAQ,QAKnB;AAED,MAAa,MAAM;IAAnB;QAgBE,SAAI,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QACjB,SAAI,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QACjB,UAAK,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QAClB,UAAK,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QAClB,QAAG,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QAChB,aAAQ,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC;QACrB,aAAQ,GAAG,IAAI,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,MAAM,CAAC,CAAC;QAC7C,UAAK,GAAG,IAAI,CAAC,EAAE,CAAC;YACd,OAAO,IAAI,CAAC;QACd,CAAC,CAAC,CAAC;IACL,CAAC;IAvBC,MAAM,CAAC,WAAW;QAChB,OAAO,CAAC,GAAG,CAAC,oCAAoC,CAAC,CAAC;QAClD,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,CAAC;YACzB,MAAM,CAAC,YAAY,GAAG,IAAI,MAAM,EAAE,CAAC;YACnC,OAAO,CAAC,GAAG,CAAC,yCAAyC,CAAC,CAAC;QACzD,CAAC;QACD,OAAO,MAAM,CAAC,YAAY,CAAC;IAC7B,CAAC;IAED,MAAM,CAAC,aAAa;QAClB,MAAM,CAAC,YAAY,GAAG,IAAI,CAAC;IAC7B,CAAC;;AAdH,wBA0BC;AAzBgB,mBAAY,GAAkB,IAAI,AAAtB,CAAuB"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agentic-qe",
-  "version": "1.4.0",
+  "version": "1.4.2",
   "description": "Agentic Quality Engineering Fleet System - AI-driven quality management platform with 34 QE skills, learning, pattern reuse, ML-based flaky detection, Multi-Model Router (70-81% cost savings), streaming progress updates, 54 MCP tools, and native TypeScript hooks",
   "main": "dist/cli/index.js",
   "types": "dist/cli/index.d.ts",
@@ -20,7 +20,7 @@
     "pretest:unit-only": "node scripts/check-memory-before-test.js",
     "test:unit-only": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/unit --maxWorkers=1 --bail --forceExit",
     "pretest:unit": "node scripts/check-memory-before-test.js",
-    "test:unit": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/unit --runInBand",
+    "test:unit": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/unit --runInBand --forceExit",
     "pretest:integration-serial": "node scripts/check-memory-before-test.js",
     "test:integration-serial": "node --expose-gc --max-old-space-size=768 --no-compilation-cache node_modules/.bin/jest tests/integration --runInBand --detectLeaks --forceExit",
     "pretest:integration": "node scripts/check-memory-before-test.js",
@@ -39,12 +39,12 @@
     "pretest:ci": "node scripts/check-memory-before-test.js",
     "test:ci": "node --expose-gc --max-old-space-size=1024 --no-compilation-cache node_modules/.bin/jest --ci --maxWorkers=1 --bail --forceExit --detectLeaks",
     "test:e2e": "node --expose-gc --max-old-space-size=768 --no-compilation-cache node_modules/.bin/jest tests/e2e --runInBand --forceExit",
-    "test:agents": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/agents --runInBand",
-    "test:mcp": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/mcp --runInBand",
-    "test:cli": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/cli --runInBand",
-    "test:utils": "node --expose-gc --max-old-space-size=768 --no-compilation-cache node_modules/.bin/jest tests/utils --runInBand",
-    "test:streaming": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/streaming --runInBand",
-    "test:agentdb": "node --expose-gc --max-old-space-size=1024 --no-compilation-cache node_modules/.bin/jest tests/agentdb --runInBand",
+    "test:agents": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/agents --runInBand --forceExit",
+    "test:mcp": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/mcp --runInBand --forceExit",
+    "test:cli": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/cli --runInBand --forceExit",
+    "test:utils": "node --expose-gc --max-old-space-size=768 --no-compilation-cache node_modules/.bin/jest tests/utils --runInBand --forceExit",
+    "test:streaming": "node --expose-gc --max-old-space-size=512 --no-compilation-cache node_modules/.bin/jest tests/streaming --runInBand --forceExit",
+    "test:agentdb": "node --expose-gc --max-old-space-size=1024 --no-compilation-cache node_modules/.bin/jest tests/agentdb --runInBand --forceExit",
     "test:benchmark": "node --expose-gc --max-old-space-size=2048 --no-compilation-cache node_modules/.bin/jest tests/agentdb/performance-benchmark.test.ts --runInBand --forceExit",
     "pretest:integration:phase2": "node scripts/check-memory-before-test.js",
     "test:integration:phase2": "node --expose-gc --max-old-space-size=1024 --no-compilation-cache node_modules/.bin/jest tests/integration/phase2 --runInBand --forceExit",
@@ -116,7 +116,6 @@
     "@xenova/transformers": "^2.6.0",
     "agentdb": "^1.0.0",
     "agentic-flow": "^1.7.3",
-    "agentic-qe": "^1.3.3",
     "ajv": "^8.17.1",
     "ajv-formats": "^3.0.1",
     "better-sqlite3": "^12.4.1",
@@ -191,7 +190,9 @@
   "files": [
     "dist",
     "bin",
-    ".claude",
+    ".claude/agents",
+    ".claude/skills",
+    ".claude/commands",
     "config",
     "LICENSE",
     "README.md",

package/.claude/aqe-fleet.json

@@ -1,47 +0,0 @@
-{
-  "fleetId": "aqe-fleet-1759773240987",
-  "version": "2.0.0",
-  "topology": "hierarchical",
-  "maxAgents": 6,
-  "agents": [
-    "qe-test-generator",
-    "qe-test-executor",
-    "qe-coverage-analyzer",
-    "qe-quality-gate",
-    "qe-performance-tester",
-    "qe-security-scanner",
-    "qe-fleet-commander",
-    "qe-chaos-engineer",
-    "qe-visual-tester",
-    "qe-requirements-validator",
-    "qe-deployment-readiness",
-    "qe-production-intelligence",
-    "qe-regression-risk-analyzer",
-    "qe-test-data-architect",
-    "qe-api-contract-validator",
-    "qe-flaky-test-hunter"
-  ],
-  "created": "2025-10-06T17:54:00.987Z",
-  "status": "active",
-  "configuration": {
-    "coordination": {
-      "memoryNamespace": "aqe",
-      "hooksEnabled": true,
-      "neuralLearning": true
-    },
-    "testing": {
-      "defaultFramework": "jest",
-      "coverageThreshold": 95,
-      "parallelWorkers": "auto"
-    },
-    "optimization": {
-      "algorithm": "sublinear",
-      "targetCoveragePerTest": "maximize"
-    }
-  },
-  "metadata": {
-    "packageVersion": "2.0.0",
-    "claudeFlowVersion": "alpha",
-    "initDate": "2025-10-06T17:54:00.987Z"
-  }
-}

package/.claude/helpers/checkpoint-manager.sh

@@ -1,251 +0,0 @@
-#!/bin/bash
-# Claude Checkpoint Manager
-# Provides easy rollback and management of Claude Code checkpoints
-
-set -e
-
-# Colors
-RED='\033[0;31m'
-GREEN='\033[0;32m'
-YELLOW='\033[1;33m'
-BLUE='\033[0;34m'
-NC='\033[0m' # No Color
-
-# Configuration
-CHECKPOINT_DIR=".claude/checkpoints"
-BACKUP_DIR=".claude/backups"
-
-# Help function
-show_help() {
-    cat << EOF
-Claude Checkpoint Manager
-========================
-
-Usage: $0 <command> [options]
-
-Commands:
-  list              List all checkpoints
-  show <id>         Show details of a specific checkpoint
-  rollback <id>     Rollback to a specific checkpoint
-  diff <id>         Show diff since checkpoint
-  clean             Clean old checkpoints (older than 7 days)
-  summary           Show session summary
-  
-Options:
-  --hard            For rollback: use git reset --hard (destructive)
-  --soft            For rollback: use git reset --soft (default)
-  --branch          For rollback: create new branch from checkpoint
-
-Examples:
-  $0 list
-  $0 show checkpoint-20240130-143022
-  $0 rollback checkpoint-20240130-143022 --branch
-  $0 diff session-end-session-20240130-150000
-EOF
-}
-
-# List all checkpoints
-function list_checkpoints() {
-    echo -e "${BLUE}📋 Available Checkpoints:${NC}"
-    echo ""
-    
-    # List checkpoint tags
-    echo -e "${YELLOW}Git Tags:${NC}"
-    local tags=$(git tag -l 'checkpoint-*' -l 'session-end-*' -l 'task-*' --sort=-creatordate | head -20)
-    if [ -n "$tags" ]; then
-        echo "$tags"
-    else
-        echo "No checkpoint tags found"
-    fi
-    
-    echo ""
-    
-    # List checkpoint branches
-    echo -e "${YELLOW}Checkpoint Branches:${NC}"
-    local branches=$(git branch -a | grep "checkpoint/" | sed 's/^[ *]*//')
-    if [ -n "$branches" ]; then
-        echo "$branches"
-    else
-        echo "No checkpoint branches found"
-    fi
-    
-    echo ""
-    
-    # List checkpoint files
-    if [ -d "$CHECKPOINT_DIR" ]; then
-        echo -e "${YELLOW}Recent Checkpoint Files:${NC}"
-        find "$CHECKPOINT_DIR" -name "*.json" -type f -printf "%T@ %p\n" | \
-            sort -rn | head -10 | cut -d' ' -f2- | xargs -I {} basename {}
-    fi
-}
-
-# Show checkpoint details
-function show_checkpoint() {
-    local checkpoint_id="$1"
-    
-    echo -e "${BLUE}📍 Checkpoint Details: $checkpoint_id${NC}"
-    echo ""
-    
-    # Check if it's a tag
-    if git tag -l "$checkpoint_id" | grep -q "$checkpoint_id"; then
-        echo -e "${YELLOW}Type:${NC} Git Tag"
-        echo -e "${YELLOW}Commit:${NC} $(git rev-list -n 1 "$checkpoint_id")"
-        echo -e "${YELLOW}Date:${NC} $(git log -1 --format=%ai "$checkpoint_id")"
-        echo -e "${YELLOW}Message:${NC}"
-        git log -1 --format=%B "$checkpoint_id" | sed 's/^/  /'
-        echo ""
-        echo -e "${YELLOW}Files changed:${NC}"
-        git diff-tree --no-commit-id --name-status -r "$checkpoint_id" | sed 's/^/  /'
-    # Check if it's a branch
-    elif git branch -a | grep -q "$checkpoint_id"; then
-        echo -e "${YELLOW}Type:${NC} Git Branch"
-        echo -e "${YELLOW}Latest commit:${NC}"
-        git log -1 --oneline "$checkpoint_id"
-    else
-        echo -e "${RED}❌ Checkpoint not found: $checkpoint_id${NC}"
-        exit 1
-    fi
-}
-
-# Rollback to checkpoint
-function rollback_checkpoint() {
-    local checkpoint_id="$1"
-    local mode="$2"
-    
-    echo -e "${YELLOW}🔄 Rolling back to checkpoint: $checkpoint_id${NC}"
-    echo ""
-    
-    # Verify checkpoint exists
-    if ! git tag -l "$checkpoint_id" | grep -q "$checkpoint_id" && \
-       ! git branch -a | grep -q "$checkpoint_id"; then
-        echo -e "${RED}❌ Checkpoint not found: $checkpoint_id${NC}"
-        exit 1
-    fi
-    
-    # Create backup before rollback
-    local backup_name="backup-$(date +%Y%m%d-%H%M%S)"
-    echo "Creating backup: $backup_name"
-    git tag "$backup_name" -m "Backup before rollback to $checkpoint_id"
-    
-    case "$mode" in
-        "--hard")
-            echo -e "${RED}⚠️  Performing hard reset (destructive)${NC}"
-            git reset --hard "$checkpoint_id"
-            echo -e "${GREEN}✅ Rolled back to $checkpoint_id (hard reset)${NC}"
-            ;;
-        "--branch")
-            local branch_name="rollback-$checkpoint_id-$(date +%Y%m%d-%H%M%S)"
-            echo "Creating new branch: $branch_name"
-            git checkout -b "$branch_name" "$checkpoint_id"
-            echo -e "${GREEN}✅ Created branch $branch_name from $checkpoint_id${NC}"
-            ;;
-        "--stash"|*)
-            echo "Stashing current changes..."
-            git stash push -m "Stash before rollback to $checkpoint_id"
-            git reset --soft "$checkpoint_id"
-            echo -e "${GREEN}✅ Rolled back to $checkpoint_id (soft reset)${NC}"
-            echo "Your changes are stashed. Use 'git stash pop' to restore them."
-            ;;
-    esac
-}
-
-# Show diff since checkpoint
-function diff_checkpoint() {
-    local checkpoint_id="$1"
-    
-    echo -e "${BLUE}📊 Changes since checkpoint: $checkpoint_id${NC}"
-    echo ""
-    
-    if git tag -l "$checkpoint_id" | grep -q "$checkpoint_id"; then
-        git diff "$checkpoint_id"
-    elif git branch -a | grep -q "$checkpoint_id"; then
-        git diff "$checkpoint_id"
-    else
-        echo -e "${RED}❌ Checkpoint not found: $checkpoint_id${NC}"
-        exit 1
-    fi
-}
-
-# Clean old checkpoints
-function clean_checkpoints() {
-    local days=${1:-7}
-    
-    echo -e "${YELLOW}🧹 Cleaning checkpoints older than $days days...${NC}"
-    echo ""
-    
-    # Clean old checkpoint files
-    if [ -d "$CHECKPOINT_DIR" ]; then
-        find "$CHECKPOINT_DIR" -name "*.json" -type f -mtime +$days -delete
-        echo "✅ Cleaned old checkpoint files"
-    fi
-    
-    # List old tags (but don't delete automatically)
-    echo ""
-    echo "Old checkpoint tags (manual deletion required):"
-    git tag -l 'checkpoint-*' --sort=-creatordate | tail -n +50 || echo "No old tags found"
-}
-
-# Show session summary
-function show_summary() {
-    echo -e "${BLUE}📊 Session Summary${NC}"
-    echo ""
-    
-    # Find most recent session summary
-    if [ -d "$CHECKPOINT_DIR" ]; then
-        local latest_summary=$(find "$CHECKPOINT_DIR" -name "summary-*.md" -type f -printf "%T@ %p\n" | \
-            sort -rn | head -1 | cut -d' ' -f2-)
-        
-        if [ -n "$latest_summary" ]; then
-            echo -e "${YELLOW}Latest session summary:${NC}"
-            cat "$latest_summary"
-        else
-            echo "No session summaries found"
-        fi
-    fi
-}
-
-# Main command handling
-case "$1" in
-    list)
-        list_checkpoints
-        ;;
-    show)
-        if [ -z "$2" ]; then
-            echo -e "${RED}Error: Please specify a checkpoint ID${NC}"
-            show_help
-            exit 1
-        fi
-        show_checkpoint "$2"
-        ;;
-    rollback)
-        if [ -z "$2" ]; then
-            echo -e "${RED}Error: Please specify a checkpoint ID${NC}"
-            show_help
-            exit 1
-        fi
-        rollback_checkpoint "$2" "$3"
-        ;;
-    diff)
-        if [ -z "$2" ]; then
-            echo -e "${RED}Error: Please specify a checkpoint ID${NC}"
-            show_help
-            exit 1
-        fi
-        diff_checkpoint "$2"
-        ;;
-    clean)
-        clean_checkpoints "$2"
-        ;;
-    summary)
-        show_summary
-        ;;
-    help|--help|-h)
-        show_help
-        ;;
-    *)
-        echo -e "${RED}Error: Unknown command: $1${NC}"
-        echo ""
-        show_help
-        exit 1
-        ;;
-esac

package/.claude/helpers/github-safe.js

@@ -1,106 +0,0 @@
-#!/usr/bin/env node
-
-/**
- * Safe GitHub CLI Helper
- * Prevents timeout issues when using gh commands with special characters
- * 
- * Usage:
- *   ./github-safe.js issue comment 123 "Message with `backticks`"
- *   ./github-safe.js pr create --title "Title" --body "Complex body"
- */
-
-import { execSync } from 'child_process';
-import { writeFileSync, unlinkSync } from 'fs';
-import { tmpdir } from 'os';
-import { join } from 'path';
-import { randomBytes } from 'crypto';
-
-const args = process.argv.slice(2);
-
-if (args.length < 2) {
-  console.log(`
-Safe GitHub CLI Helper
-
-Usage:
-  ./github-safe.js issue comment <number> <body>
-  ./github-safe.js pr comment <number> <body>
-  ./github-safe.js issue create --title <title> --body <body>
-  ./github-safe.js pr create --title <title> --body <body>
-
-This helper prevents timeout issues with special characters like:
-- Backticks in code examples
-- Command substitution \$(...)
-- Directory paths
-- Special shell characters
-`);
-  process.exit(1);
-}
-
-const [command, subcommand, ...restArgs] = args;
-
-// Handle commands that need body content
-if ((command === 'issue' || command === 'pr') && 
-    (subcommand === 'comment' || subcommand === 'create')) {
-  
-  let bodyIndex = -1;
-  let body = '';
-  
-  if (subcommand === 'comment' && restArgs.length >= 2) {
-    // Simple format: github-safe.js issue comment 123 "body"
-    body = restArgs[1];
-    bodyIndex = 1;
-  } else {
-    // Flag format: --body "content" 
-    bodyIndex = restArgs.indexOf('--body');
-    if (bodyIndex !== -1 && bodyIndex < restArgs.length - 1) {
-      body = restArgs[bodyIndex + 1];
-    }
-  }
-  
-  if (body) {
-    // Use temporary file for body content
-    const tmpFile = join(tmpdir(), `gh-body-${randomBytes(8).toString('hex')}.tmp`);
-    
-    try {
-      writeFileSync(tmpFile, body, 'utf8');
-      
-      // Build new command with --body-file
-      const newArgs = [...restArgs];
-      if (subcommand === 'comment' && bodyIndex === 1) {
-        // Replace body with --body-file
-        newArgs[1] = '--body-file';
-        newArgs.push(tmpFile);
-      } else if (bodyIndex !== -1) {
-        // Replace --body with --body-file
-        newArgs[bodyIndex] = '--body-file';
-        newArgs[bodyIndex + 1] = tmpFile;
-      }
-      
-      // Execute safely
-      const ghCommand = `gh ${command} ${subcommand} ${newArgs.join(' ')}`;
-      console.log(`Executing: ${ghCommand}`);
-      
-      const result = execSync(ghCommand, { 
-        stdio: 'inherit',
-        timeout: 30000 // 30 second timeout
-      });
-      
-    } catch (error) {
-      console.error('Error:', error.message);
-      process.exit(1);
-    } finally {
-      // Clean up
-      try {
-        unlinkSync(tmpFile);
-      } catch (e) {
-        // Ignore cleanup errors
-      }
-    }
-  } else {
-    // No body content, execute normally
-    execSync(`gh ${args.join(' ')}`, { stdio: 'inherit' });
-  }
-} else {
-  // Other commands, execute normally
-  execSync(`gh ${args.join(' ')}`, { stdio: 'inherit' });
-}

package/.claude/helpers/github-setup.sh

@@ -1,28 +0,0 @@
-#!/bin/bash
-# Setup GitHub integration for Claude Flow
-
-echo "🔗 Setting up GitHub integration..."
-
-# Check for gh CLI
-if ! command -v gh &> /dev/null; then
-    echo "⚠️  GitHub CLI (gh) not found"
-    echo "Install from: https://cli.github.com/"
-    echo "Continuing without GitHub features..."
-else
-    echo "✅ GitHub CLI found"
-    
-    # Check auth status
-    if gh auth status &> /dev/null; then
-        echo "✅ GitHub authentication active"
-    else
-        echo "⚠️  Not authenticated with GitHub"
-        echo "Run: gh auth login"
-    fi
-fi
-
-echo ""
-echo "📦 GitHub swarm commands available:"
-echo "  - npx claude-flow github swarm"
-echo "  - npx claude-flow repo analyze"
-echo "  - npx claude-flow pr enhance"
-echo "  - npx claude-flow issue triage"