agentic-qe 1.3.7 → 1.4.1

package/dist/utils/__mocks__/Database.js

@@ -67,61 +67,28 @@ exports.mockDatabase = {
 class Database {
     constructor(dbPath = './data/fleet.db') {
         this.dbPath = dbPath;
-    }
-    // Lifecycle
-    async initialize() {
-        return exports.mockDatabase.initialize();
-    }
-    async close() {
-        return exports.mockDatabase.close();
-    }
-    // Query methods
-    exec(sql) {
-        exports.mockDatabase.exec();
-    }
-    async run(sql, params = []) {
-        const result = exports.mockDatabase.run();
-        return {
-            lastID: result.lastInsertRowid || 0,
-            changes: result.changes || 0
-        };
-    }
-    async get(sql, params = []) {
-        return exports.mockDatabase.get();
-    }
-    async all(sql, params = []) {
-        return exports.mockDatabase.all();
-    }
-    // Prepared statements
-    prepare(sql) {
-        return exports.mockDatabase.prepare();
-    }
-    // Utility methods
-    async stats() {
-        return exports.mockDatabase.stats();
-    }
-    async compact() {
-        return exports.mockDatabase.compact();
-    }
-    // Transaction support
-    transaction(callback) {
-        exports.mockDatabase.transaction(callback);
-    }
-    // Domain-specific methods
-    async upsertFleet(fleet) {
-        return exports.mockDatabase.upsertFleet(fleet);
-    }
-    async upsertAgent(agent) {
-        return exports.mockDatabase.upsertAgent(agent);
-    }
-    async upsertTask(task) {
-        return exports.mockDatabase.upsertTask(task);
-    }
-    async insertEvent(event) {
-        return exports.mockDatabase.insertEvent(event);
-    }
-    async insertMetric(metric) {
-        return exports.mockDatabase.insertMetric(metric);
+        // Assign mock functions directly to instance
+        this.initialize = exports.mockDatabase.initialize;
+        this.close = exports.mockDatabase.close;
+        this.exec = globals_1.jest.fn(() => exports.mockDatabase.exec());
+        this.run = globals_1.jest.fn(async () => {
+            const result = exports.mockDatabase.run();
+            return {
+                lastID: result.lastInsertRowid || 0,
+                changes: result.changes || 0
+            };
+        });
+        this.get = globals_1.jest.fn(async () => exports.mockDatabase.get());
+        this.all = globals_1.jest.fn(async () => exports.mockDatabase.all());
+        this.prepare = globals_1.jest.fn(() => exports.mockDatabase.prepare());
+        this.stats = exports.mockDatabase.stats;
+        this.compact = exports.mockDatabase.compact;
+        this.transaction = globals_1.jest.fn((callback) => exports.mockDatabase.transaction(callback));
+        this.upsertFleet = exports.mockDatabase.upsertFleet;
+        this.upsertAgent = exports.mockDatabase.upsertAgent;
+        this.upsertTask = exports.mockDatabase.upsertTask;
+        this.insertEvent = exports.mockDatabase.insertEvent;
+        this.insertMetric = exports.mockDatabase.insertMetric;
     }
     // Test helper
     _resetMocks() {

package/dist/utils/__mocks__/Database.js.map

@@ -1 +1 @@
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+{"version":3,"file":"Database.js","sourceRoot":"","sources":["../../../src/utils/__mocks__/Database.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAEH,2CAAqC;AAErC;;;GAGG;AACU,QAAA,YAAY,GAAG;IAC1B,yBAAyB;IACzB,UAAU,EAAE,cAAI,CAAC,EAAE,EAAuB,CAAC,iBAAiB,CAAC,SAAS,CAAC;IACvE,KAAK,EAAE,cAAI,CAAC,EAAE,EAAuB,CAAC,iBAAiB,CAAC,SAAS,CAAC;IAElE,+DAA+D;IAC/D,KAAK,EAAE,cAAI,CAAC,EAAE,EAAyB,CAAC,eAAe,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,CAAC;IAErE,6BAA6B;IAC7B,OAAO,EAAE,cAAI,CAAC,EAAE,EAAa,CAAC,eAAe,CAAC;QAC5C,GAAG,EAAE,cAAI,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,eAAe,EAAE,CAAC,EAAE,CAAC;QAClE,GAAG,EAAE,cAAI,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,SAAS,CAAC;QACzC,GAAG,EAAE,cAAI,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,EAAE,CAAC;QAClC,QAAQ,EAAE,cAAI,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,SAAS,CAAC;KAC/C,CAAC;IAEF,4DAA4D;IAC5D,GAAG,EAAE,cAAI,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,eAAe,EAAE,CAAC,EAAE,CAAC;IAClE,GAAG,EAAE,cAAI,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,SAAS,CAAC;IACzC,GAAG,EAAE,cAAI,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,EAAE,CAAC;IAClC,IAAI,EAAE,cAAI,CAAC,EAAE,EAAE,CAAC,eAAe,CAAC,SAAS,CAAC;IAC1C,IAAI,EAAE,cAAI,CAAC,EAAE,EAAc,CAAC,eAAe,CAAC,SAAS,CAAC;IAEtD,kBAAkB;IAClB,MAAM,EAAE,cAAI,CAAC,EAAE,EAAa,CAAC,eAAe,CAAC,SAAS,CAAC;IACvD,KAAK,EAAE,cAAI,CAAC,EAAE,EAAsB,CAAC,iBAAiB,CAAC;QACrD,KAAK,EAAE,CAAC;QACR,MAAM,EAAE,CAAC;QACT,IAAI,EAAE,IAAI;QACV,MAAM,EAAE,EAAE;QACV,YAAY,EAAE,IAAI,IAAI,EAAE;KACzB,CAAC;IACF,OAAO,EAAE,cAAI,CAAC,EAAE,EAAuB,CAAC,iBAAiB,CAAC,SAAS,CAAC;IAEpE,sBAAsB;IACtB,WAAW,EAAE,cAAI,CAAC,EAAE,CAAiC,CAAC,QAAoB,EAAE,EAAE,CAAC,QAAQ,EAAE,CAAC;IAC1F,gBAAgB,EAAE,cAAI,CAAC,EAAE,EAAuB,CAAC,iBAAiB,CAAC,SAAS,CAAC;IAC7E,MAAM,EAAE,cAAI,CAAC,EAAE,EAAuB,CAAC,iBAAiB,CAAC,SAAS,CAAC;IACnE,QAAQ,EAAE,cAAI,CAAC,EAAE,EAAuB,CAAC,iBAAiB,CAAC,SAAS,CAAC;IAErE,qDAAqD;IACrD,WAAW,EAAE,cAAI,CAAC,EAAE,EAAiC,CAAC,iBAAiB,CAAC,SAAS,CAAC;IAClF,WAAW,EAAE,cAAI,CAAC,EAAE,EAAiC,CAAC,iBAAiB,CAAC,SAAS,CAAC;IAClF,UAAU,EAAE,cAAI,CAAC,EAAE,EAAgC,CAAC,iBAAiB,CAAC,SAAS,CAAC;IAChF,WAAW,EAAE,cAAI,CAAC,EAAE,EAAiC,CAAC,iBAAiB,CAAC,SAAS,CAAC;IAClF,YAAY,EAAE,cAAI,CAAC,EAAE,EAAkC,CAAC,iBAAiB,CAAC,SAAS,CAAC;IAEpF,wCAAwC;IACxC,WAAW,EAAE,GAAG,EAAE;QAChB,MAAM,CAAC,MAAM,CAAC,oBAAY,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE;YAC1C,IAAI,OAAO,KAAK,KAAK,UAAU,IAAI,WAAW,IAAI,KAAK,EAAE,CAAC;gBACvD,KAAmB,CAAC,SAAS,EAAE,CAAC;YACnC,CAAC;QACH,CAAC,CAAC,CAAC;IACL,CAAC;CACF,CAAC;AAEF;;GAEG;AACH,MAAa,QAAQ;IAkBnB,YAAY,SAAiB,iBAAiB;QAC5C,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;QAErB,6CAA6C;QAC7C,IAAI,CAAC,UAAU,GAAG,oBAAY,CAAC,UAA4C,CAAC;QAC5E,IAAI,CAAC,KAAK,GAAG,oBAAY,CAAC,KAAuC,CAAC;QAClE,IAAI,CAAC,IAAI,GAAG,cAAI,CAAC,EAAE,CAAwB,GAAG,EAAE,CAAC,oBAAY,CAAC,IAAI,EAAE,CAAC,CAAC;QACtE,IAAI,CAAC,GAAG,GAAG,cAAI,CAAC,EAAE,CAAgF,KAAK,IAAI,EAAE;YAC3G,MAAM,MAAM,GAAG,oBAAY,CAAC,GAAG,EAAoD,CAAC;YACpF,OAAO;gBACL,MAAM,EAAE,MAAM,CAAC,eAAe,IAAI,CAAC;gBACnC,OAAO,EAAE,MAAM,CAAC,OAAO,IAAI,CAAC;aAC7B,CAAC;QACJ,CAAC,CAAC,CAAC;QACH,IAAI,CAAC,GAAG,GAAG,cAAI,CAAC,EAAE,CAAgD,KAAK,IAAI,EAAE,CAAC,oBAAY,CAAC,GAAG,EAAE,CAAC,CAAC;QAClG,IAAI,CAAC,GAAG,GAAG,cAAI,CAAC,EAAE,CAAkD,KAAK,IAAI,EAAE,CAAC,oBAAY,CAAC,GAAG,EAAW,CAAC,CAAC;QAC7G,IAAI,CAAC,OAAO,GAAG,cAAI,CAAC,EAAE,CAAuB,GAAG,EAAE,CAAC,oBAAY,CAAC,OAAO,EAAE,CAAC,CAAC;QAC3E,IAAI,CAAC,KAAK,GAAG,oBAAY,CAAC,KAAsC,CAAC;QACjE,IAAI,CAAC,OAAO,GAAG,oBAAY,CAAC,OAAyC,CAAC;QACtE,IAAI,CAAC,WAAW,GAAG,cAAI,CAAC,EAAE,CAAiC,CAAC,QAAoB,EAAE,EAAE,CAAC,oBAAY,CAAC,WAAW,CAAC,QAAQ,CAAC,CAAC,CAAC;QACzH,IAAI,CAAC,WAAW,GAAG,oBAAY,CAAC,WAAuD,CAAC;QACxF,IAAI,CAAC,WAAW,GAAG,oBAAY,CAAC,WAAuD,CAAC;QACxF,IAAI,CAAC,UAAU,GAAG,oBAAY,CAAC,UAAqD,CAAC;QACrF,IAAI,CAAC,WAAW,GAAG,oBAAY,CAAC,WAAuD,CAAC;QACxF,IAAI,CAAC,YAAY,GAAG,oBAAY,CAAC,YAAyD,CAAC;IAC7F,CAAC;IAED,cAAc;IACd,WAAW;QACT,oBAAY,CAAC,WAAW,EAAE,CAAC;IAC7B,CAAC;CACF;AAjDD,4BAiDC;AAED,oCAAoC;AACpC,kBAAe,QAAQ,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agentic-qe",
-  "version": "1.3.7",
+  "version": "1.4.1",
   "description": "Agentic Quality Engineering Fleet System - AI-driven quality management platform with 34 QE skills, learning, pattern reuse, ML-based flaky detection, Multi-Model Router (70-81% cost savings), streaming progress updates, 54 MCP tools, and native TypeScript hooks",
   "main": "dist/cli/index.js",
   "types": "dist/cli/index.d.ts",
@@ -116,7 +116,6 @@
     "@xenova/transformers": "^2.6.0",
     "agentdb": "^1.0.0",
     "agentic-flow": "^1.7.3",
-    "agentic-qe": "^1.3.3",
     "ajv": "^8.17.1",
     "ajv-formats": "^3.0.1",
     "better-sqlite3": "^12.4.1",
@@ -191,7 +190,9 @@
   "files": [
     "dist",
     "bin",
-    ".claude",
+    ".claude/agents",
+    ".claude/skills",
+    ".claude/commands",
     "config",
     "LICENSE",
     "README.md",

package/.claude/aqe-fleet.json

@@ -1,47 +0,0 @@
-{
-  "fleetId": "aqe-fleet-1759773240987",
-  "version": "2.0.0",
-  "topology": "hierarchical",
-  "maxAgents": 6,
-  "agents": [
-    "qe-test-generator",
-    "qe-test-executor",
-    "qe-coverage-analyzer",
-    "qe-quality-gate",
-    "qe-performance-tester",
-    "qe-security-scanner",
-    "qe-fleet-commander",
-    "qe-chaos-engineer",
-    "qe-visual-tester",
-    "qe-requirements-validator",
-    "qe-deployment-readiness",
-    "qe-production-intelligence",
-    "qe-regression-risk-analyzer",
-    "qe-test-data-architect",
-    "qe-api-contract-validator",
-    "qe-flaky-test-hunter"
-  ],
-  "created": "2025-10-06T17:54:00.987Z",
-  "status": "active",
-  "configuration": {
-    "coordination": {
-      "memoryNamespace": "aqe",
-      "hooksEnabled": true,
-      "neuralLearning": true
-    },
-    "testing": {
-      "defaultFramework": "jest",
-      "coverageThreshold": 95,
-      "parallelWorkers": "auto"
-    },
-    "optimization": {
-      "algorithm": "sublinear",
-      "targetCoveragePerTest": "maximize"
-    }
-  },
-  "metadata": {
-    "packageVersion": "2.0.0",
-    "claudeFlowVersion": "alpha",
-    "initDate": "2025-10-06T17:54:00.987Z"
-  }
-}

package/.claude/helpers/checkpoint-manager.sh

@@ -1,251 +0,0 @@
-#!/bin/bash
-# Claude Checkpoint Manager
-# Provides easy rollback and management of Claude Code checkpoints
-
-set -e
-
-# Colors
-RED='\033[0;31m'
-GREEN='\033[0;32m'
-YELLOW='\033[1;33m'
-BLUE='\033[0;34m'
-NC='\033[0m' # No Color
-
-# Configuration
-CHECKPOINT_DIR=".claude/checkpoints"
-BACKUP_DIR=".claude/backups"
-
-# Help function
-show_help() {
-    cat << EOF
-Claude Checkpoint Manager
-========================
-
-Usage: $0 <command> [options]
-
-Commands:
-  list              List all checkpoints
-  show <id>         Show details of a specific checkpoint
-  rollback <id>     Rollback to a specific checkpoint
-  diff <id>         Show diff since checkpoint
-  clean             Clean old checkpoints (older than 7 days)
-  summary           Show session summary
-  
-Options:
-  --hard            For rollback: use git reset --hard (destructive)
-  --soft            For rollback: use git reset --soft (default)
-  --branch          For rollback: create new branch from checkpoint
-
-Examples:
-  $0 list
-  $0 show checkpoint-20240130-143022
-  $0 rollback checkpoint-20240130-143022 --branch
-  $0 diff session-end-session-20240130-150000
-EOF
-}
-
-# List all checkpoints
-function list_checkpoints() {
-    echo -e "${BLUE}📋 Available Checkpoints:${NC}"
-    echo ""
-    
-    # List checkpoint tags
-    echo -e "${YELLOW}Git Tags:${NC}"
-    local tags=$(git tag -l 'checkpoint-*' -l 'session-end-*' -l 'task-*' --sort=-creatordate | head -20)
-    if [ -n "$tags" ]; then
-        echo "$tags"
-    else
-        echo "No checkpoint tags found"
-    fi
-    
-    echo ""
-    
-    # List checkpoint branches
-    echo -e "${YELLOW}Checkpoint Branches:${NC}"
-    local branches=$(git branch -a | grep "checkpoint/" | sed 's/^[ *]*//')
-    if [ -n "$branches" ]; then
-        echo "$branches"
-    else
-        echo "No checkpoint branches found"
-    fi
-    
-    echo ""
-    
-    # List checkpoint files
-    if [ -d "$CHECKPOINT_DIR" ]; then
-        echo -e "${YELLOW}Recent Checkpoint Files:${NC}"
-        find "$CHECKPOINT_DIR" -name "*.json" -type f -printf "%T@ %p\n" | \
-            sort -rn | head -10 | cut -d' ' -f2- | xargs -I {} basename {}
-    fi
-}
-
-# Show checkpoint details
-function show_checkpoint() {
-    local checkpoint_id="$1"
-    
-    echo -e "${BLUE}📍 Checkpoint Details: $checkpoint_id${NC}"
-    echo ""
-    
-    # Check if it's a tag
-    if git tag -l "$checkpoint_id" | grep -q "$checkpoint_id"; then
-        echo -e "${YELLOW}Type:${NC} Git Tag"
-        echo -e "${YELLOW}Commit:${NC} $(git rev-list -n 1 "$checkpoint_id")"
-        echo -e "${YELLOW}Date:${NC} $(git log -1 --format=%ai "$checkpoint_id")"
-        echo -e "${YELLOW}Message:${NC}"
-        git log -1 --format=%B "$checkpoint_id" | sed 's/^/  /'
-        echo ""
-        echo -e "${YELLOW}Files changed:${NC}"
-        git diff-tree --no-commit-id --name-status -r "$checkpoint_id" | sed 's/^/  /'
-    # Check if it's a branch
-    elif git branch -a | grep -q "$checkpoint_id"; then
-        echo -e "${YELLOW}Type:${NC} Git Branch"
-        echo -e "${YELLOW}Latest commit:${NC}"
-        git log -1 --oneline "$checkpoint_id"
-    else
-        echo -e "${RED}❌ Checkpoint not found: $checkpoint_id${NC}"
-        exit 1
-    fi
-}
-
-# Rollback to checkpoint
-function rollback_checkpoint() {
-    local checkpoint_id="$1"
-    local mode="$2"
-    
-    echo -e "${YELLOW}🔄 Rolling back to checkpoint: $checkpoint_id${NC}"
-    echo ""
-    
-    # Verify checkpoint exists
-    if ! git tag -l "$checkpoint_id" | grep -q "$checkpoint_id" && \
-       ! git branch -a | grep -q "$checkpoint_id"; then
-        echo -e "${RED}❌ Checkpoint not found: $checkpoint_id${NC}"
-        exit 1
-    fi
-    
-    # Create backup before rollback
-    local backup_name="backup-$(date +%Y%m%d-%H%M%S)"
-    echo "Creating backup: $backup_name"
-    git tag "$backup_name" -m "Backup before rollback to $checkpoint_id"
-    
-    case "$mode" in
-        "--hard")
-            echo -e "${RED}⚠️  Performing hard reset (destructive)${NC}"
-            git reset --hard "$checkpoint_id"
-            echo -e "${GREEN}✅ Rolled back to $checkpoint_id (hard reset)${NC}"
-            ;;
-        "--branch")
-            local branch_name="rollback-$checkpoint_id-$(date +%Y%m%d-%H%M%S)"
-            echo "Creating new branch: $branch_name"
-            git checkout -b "$branch_name" "$checkpoint_id"
-            echo -e "${GREEN}✅ Created branch $branch_name from $checkpoint_id${NC}"
-            ;;
-        "--stash"|*)
-            echo "Stashing current changes..."
-            git stash push -m "Stash before rollback to $checkpoint_id"
-            git reset --soft "$checkpoint_id"
-            echo -e "${GREEN}✅ Rolled back to $checkpoint_id (soft reset)${NC}"
-            echo "Your changes are stashed. Use 'git stash pop' to restore them."
-            ;;
-    esac
-}
-
-# Show diff since checkpoint
-function diff_checkpoint() {
-    local checkpoint_id="$1"
-    
-    echo -e "${BLUE}📊 Changes since checkpoint: $checkpoint_id${NC}"
-    echo ""
-    
-    if git tag -l "$checkpoint_id" | grep -q "$checkpoint_id"; then
-        git diff "$checkpoint_id"
-    elif git branch -a | grep -q "$checkpoint_id"; then
-        git diff "$checkpoint_id"
-    else
-        echo -e "${RED}❌ Checkpoint not found: $checkpoint_id${NC}"
-        exit 1
-    fi
-}
-
-# Clean old checkpoints
-function clean_checkpoints() {
-    local days=${1:-7}
-    
-    echo -e "${YELLOW}🧹 Cleaning checkpoints older than $days days...${NC}"
-    echo ""
-    
-    # Clean old checkpoint files
-    if [ -d "$CHECKPOINT_DIR" ]; then
-        find "$CHECKPOINT_DIR" -name "*.json" -type f -mtime +$days -delete
-        echo "✅ Cleaned old checkpoint files"
-    fi
-    
-    # List old tags (but don't delete automatically)
-    echo ""
-    echo "Old checkpoint tags (manual deletion required):"
-    git tag -l 'checkpoint-*' --sort=-creatordate | tail -n +50 || echo "No old tags found"
-}
-
-# Show session summary
-function show_summary() {
-    echo -e "${BLUE}📊 Session Summary${NC}"
-    echo ""
-    
-    # Find most recent session summary
-    if [ -d "$CHECKPOINT_DIR" ]; then
-        local latest_summary=$(find "$CHECKPOINT_DIR" -name "summary-*.md" -type f -printf "%T@ %p\n" | \
-            sort -rn | head -1 | cut -d' ' -f2-)
-        
-        if [ -n "$latest_summary" ]; then
-            echo -e "${YELLOW}Latest session summary:${NC}"
-            cat "$latest_summary"
-        else
-            echo "No session summaries found"
-        fi
-    fi
-}
-
-# Main command handling
-case "$1" in
-    list)
-        list_checkpoints
-        ;;
-    show)
-        if [ -z "$2" ]; then
-            echo -e "${RED}Error: Please specify a checkpoint ID${NC}"
-            show_help
-            exit 1
-        fi
-        show_checkpoint "$2"
-        ;;
-    rollback)
-        if [ -z "$2" ]; then
-            echo -e "${RED}Error: Please specify a checkpoint ID${NC}"
-            show_help
-            exit 1
-        fi
-        rollback_checkpoint "$2" "$3"
-        ;;
-    diff)
-        if [ -z "$2" ]; then
-            echo -e "${RED}Error: Please specify a checkpoint ID${NC}"
-            show_help
-            exit 1
-        fi
-        diff_checkpoint "$2"
-        ;;
-    clean)
-        clean_checkpoints "$2"
-        ;;
-    summary)
-        show_summary
-        ;;
-    help|--help|-h)
-        show_help
-        ;;
-    *)
-        echo -e "${RED}Error: Unknown command: $1${NC}"
-        echo ""
-        show_help
-        exit 1
-        ;;
-esac

package/.claude/helpers/github-safe.js

@@ -1,106 +0,0 @@
-#!/usr/bin/env node
-
-/**
- * Safe GitHub CLI Helper
- * Prevents timeout issues when using gh commands with special characters
- * 
- * Usage:
- *   ./github-safe.js issue comment 123 "Message with `backticks`"
- *   ./github-safe.js pr create --title "Title" --body "Complex body"
- */
-
-import { execSync } from 'child_process';
-import { writeFileSync, unlinkSync } from 'fs';
-import { tmpdir } from 'os';
-import { join } from 'path';
-import { randomBytes } from 'crypto';
-
-const args = process.argv.slice(2);
-
-if (args.length < 2) {
-  console.log(`
-Safe GitHub CLI Helper
-
-Usage:
-  ./github-safe.js issue comment <number> <body>
-  ./github-safe.js pr comment <number> <body>
-  ./github-safe.js issue create --title <title> --body <body>
-  ./github-safe.js pr create --title <title> --body <body>
-
-This helper prevents timeout issues with special characters like:
-- Backticks in code examples
-- Command substitution \$(...)
-- Directory paths
-- Special shell characters
-`);
-  process.exit(1);
-}
-
-const [command, subcommand, ...restArgs] = args;
-
-// Handle commands that need body content
-if ((command === 'issue' || command === 'pr') && 
-    (subcommand === 'comment' || subcommand === 'create')) {
-  
-  let bodyIndex = -1;
-  let body = '';
-  
-  if (subcommand === 'comment' && restArgs.length >= 2) {
-    // Simple format: github-safe.js issue comment 123 "body"
-    body = restArgs[1];
-    bodyIndex = 1;
-  } else {
-    // Flag format: --body "content" 
-    bodyIndex = restArgs.indexOf('--body');
-    if (bodyIndex !== -1 && bodyIndex < restArgs.length - 1) {
-      body = restArgs[bodyIndex + 1];
-    }
-  }
-  
-  if (body) {
-    // Use temporary file for body content
-    const tmpFile = join(tmpdir(), `gh-body-${randomBytes(8).toString('hex')}.tmp`);
-    
-    try {
-      writeFileSync(tmpFile, body, 'utf8');
-      
-      // Build new command with --body-file
-      const newArgs = [...restArgs];
-      if (subcommand === 'comment' && bodyIndex === 1) {
-        // Replace body with --body-file
-        newArgs[1] = '--body-file';
-        newArgs.push(tmpFile);
-      } else if (bodyIndex !== -1) {
-        // Replace --body with --body-file
-        newArgs[bodyIndex] = '--body-file';
-        newArgs[bodyIndex + 1] = tmpFile;
-      }
-      
-      // Execute safely
-      const ghCommand = `gh ${command} ${subcommand} ${newArgs.join(' ')}`;
-      console.log(`Executing: ${ghCommand}`);
-      
-      const result = execSync(ghCommand, { 
-        stdio: 'inherit',
-        timeout: 30000 // 30 second timeout
-      });
-      
-    } catch (error) {
-      console.error('Error:', error.message);
-      process.exit(1);
-    } finally {
-      // Clean up
-      try {
-        unlinkSync(tmpFile);
-      } catch (e) {
-        // Ignore cleanup errors
-      }
-    }
-  } else {
-    // No body content, execute normally
-    execSync(`gh ${args.join(' ')}`, { stdio: 'inherit' });
-  }
-} else {
-  // Other commands, execute normally
-  execSync(`gh ${args.join(' ')}`, { stdio: 'inherit' });
-}

package/.claude/helpers/github-setup.sh

@@ -1,28 +0,0 @@
-#!/bin/bash
-# Setup GitHub integration for Claude Flow
-
-echo "🔗 Setting up GitHub integration..."
-
-# Check for gh CLI
-if ! command -v gh &> /dev/null; then
-    echo "⚠️  GitHub CLI (gh) not found"
-    echo "Install from: https://cli.github.com/"
-    echo "Continuing without GitHub features..."
-else
-    echo "✅ GitHub CLI found"
-    
-    # Check auth status
-    if gh auth status &> /dev/null; then
-        echo "✅ GitHub authentication active"
-    else
-        echo "⚠️  Not authenticated with GitHub"
-        echo "Run: gh auth login"
-    fi
-fi
-
-echo ""
-echo "📦 GitHub swarm commands available:"
-echo "  - npx claude-flow github swarm"
-echo "  - npx claude-flow repo analyze"
-echo "  - npx claude-flow pr enhance"
-echo "  - npx claude-flow issue triage"

package/.claude/helpers/quick-start.sh

@@ -1,19 +0,0 @@
-#!/bin/bash
-# Quick start guide for Claude Flow
-
-echo "🚀 Claude Flow Quick Start"
-echo "=========================="
-echo ""
-echo "1. Initialize a swarm:"
-echo "   npx claude-flow swarm init --topology hierarchical"
-echo ""
-echo "2. Spawn agents:"
-echo "   npx claude-flow agent spawn --type coder --name "API Developer""
-echo ""
-echo "3. Orchestrate tasks:"
-echo "   npx claude-flow task orchestrate --task "Build REST API""
-echo ""
-echo "4. Monitor progress:"
-echo "   npx claude-flow swarm monitor"
-echo ""
-echo "📚 For more examples, see .claude/commands/"

package/.claude/helpers/setup-mcp.sh

@@ -1,18 +0,0 @@
-#!/bin/bash
-# Setup MCP server for Claude Flow
-
-echo "🚀 Setting up Claude Flow MCP server..."
-
-# Check if claude command exists
-if ! command -v claude &> /dev/null; then
-    echo "❌ Error: Claude Code CLI not found"
-    echo "Please install Claude Code first"
-    exit 1
-fi
-
-# Add MCP server
-echo "📦 Adding Claude Flow MCP server..."
-claude mcp add claude-flow npx claude-flow mcp start
-
-echo "✅ MCP server setup complete!"
-echo "🎯 You can now use mcp__claude-flow__ tools in Claude Code"