npm - agentic-flow - Versions diffs - 3.0.0-alpha.2 → 3.0.0 - Mend

agentic-flow 3.0.0-alpha.2 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1820) hide show

package/dist/mcp/fastmcp/servers/stdio-full.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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node\n// Full FastMCP server with stdio transport - All 86 claude-flow-sdk tools\nimport { FastMCP } from 'fastmcp';\nimport { z } from 'zod';\nimport { execSync } from 'child_process';\nimport { AgentDBService } from '../../../services/agentdb-service.js';\nimport type {\n EpisodeData, SkillData, PatternData, TrajectoryStep,\n} from '../../../services/agentdb-service.js';\nimport { registerSessionTools } from '../tools/session-tools.js';\nimport { registerGitHubTools } from '../tools/github-tools.js';\nimport { registerNeuralTools } from '../tools/neural-tools.js';\nimport { registerRuVectorTools } from '../tools/ruvector-tools.js';\nimport { registerSonaRvfTools } from '../tools/sona-rvf-tools.js';\nimport { registerInfrastructureTools } from '../tools/infrastructure-tools.js';\nimport { registerAutopilotTools } from '../tools/autopilot-tools.js';\nimport { registerPerformanceTools } from '../tools/performance-tools.js';\nimport { registerWorkflowTools } from '../tools/workflow-tools.js';\nimport { registerDAATools } from '../tools/daa-tools.js';\nimport { registerAttentionTools } from '../tools/attention-tools.js';\nimport { registerHiddenControllerTools } from '../tools/hidden-controllers.js';\nimport { registerQUICTools } from '../tools/quic-tools.js';\nimport { registerRVFTools } from '../tools/rvf-tools.js';\nimport { registerCostOptimizerTools } from '../tools/cost-optimizer-tools.js';\nimport { registerStreamingTools } from '../tools/streaming-tools.js';\nimport { registerSonaTools } from '../tools/sona-tools.js';\nimport { registerMemoryTools } from '../tools/memory-tools.js';\nimport { registerQuantizationTools } from '../tools/quantization-tools.js';\nimport { registerExplainabilityTools } from '../tools/explainability-tools.js';\n// SECURITY: Import rate limiting middleware\nimport { withRateLimit, getRateLimitStats } from '../../middleware/apply-rate-limit.js';\n// Import DirectCallBridge to eliminate CLI spawning\nimport { DirectCallBridge } from '../../../services/direct-call-bridge.js';\nimport { SwarmService } from '../../../services/swarm-service.js';\nimport { HookService } from '../../../services/hook-service.js';\n\nconsole.error('Starting FastMCP Full Server (stdio transport)...');\nconsole.error('Loading 211+ tools: core (12), agentdb (12), session (8), github (8), neural (6), ruvector (6), sona-rvf (11), infrastructure (13), autopilot (10), performance (15), workflow (11), daa (10), attention (6), hidden-controllers (17), quic (4), rvf (5), cost-optimizer (4), streaming (10), sona-rl (8), memory (6), quantization (8), explainability (10)');\nconsole.error('SECURITY: Rate limiting enabled (100 req/min default, 10 req/min for critical tools)');\n\n// Create server\nconst server = new FastMCP({\n name: 'fastmcp-stdio-full',\n version: '1.0.0'\n});\n\n// Initialize DirectCallBridge (eliminates CLI spawning anti-pattern)\nlet directBridge: DirectCallBridge \| null = null;\n(async () => {\n try {\n const agentDB = await AgentDBService.getInstance();\n const hooks = new HookService(agentDB);\n const swarm = new SwarmService(agentDB, hooks);\n directBridge = new DirectCallBridge(agentDB, swarm);\n console.error('[DirectCallBridge] Initialized (100-200x faster than CLI spawning)');\n } catch (err) {\n console.error('[DirectCallBridge] Initialization failed, tools will fall back to CLI:', err);\n }\n})();\n\n// SECURITY: Wrap addTool to automatically apply rate limiting to ALL tools\nconst originalAddTool = server.addTool.bind(server);\nserver.addTool = function(tool: any) {\n const wrappedTool = {\n ...tool,\n execute: withRateLimit(tool.name, tool.execute)\n };\n return originalAddTool(wrappedTool);\n};\n\n// Tool 1: Memory Store\nserver.addTool({\n name: 'memory_store',\n description: 'Store a value in persistent memory with optional namespace and TTL',\n parameters: z.object({\n key: z.string().min(1).describe('Memory key'),\n value: z.string().describe('Value to store'),\n namespace: z.string().optional().default('default').describe('Memory namespace'),\n ttl: z.number().positive().optional().describe('Time-to-live in seconds')\n }),\n execute: async ({ key, value, namespace, ttl }) => {\n try {\n const cmd = [\n 'npx claude-flow@alpha memory store',\n `\"${key}\"`,\n `\"${value}\"`,\n `--namespace \"${namespace}\"`,\n ttl ? `--ttl ${ttl}` : ''\n ].filter(Boolean).join(' ');\n\n const result = execSync(cmd, { encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024 });\n\n return JSON.stringify({\n success: true,\n key,\n namespace,\n size: value.length,\n ttl,\n timestamp: new Date().toISOString(),\n message: 'Memory stored successfully'\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to store memory: ${error.message}`);\n }\n }\n});\n\n// Tool 2: Memory Retrieve\nserver.addTool({\n name: 'memory_retrieve',\n description: 'Retrieve a value from persistent memory',\n parameters: z.object({\n key: z.string().min(1).describe('Memory key'),\n namespace: z.string().optional().default('default').describe('Memory namespace')\n }),\n execute: async ({ key, namespace }) => {\n try {\n const cmd = `npx claude-flow@alpha memory retrieve \"${key}\" --namespace \"${namespace}\"`;\n const result = execSync(cmd, { encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024 });\n\n return JSON.stringify({\n success: true,\n key,\n namespace,\n value: result.trim(),\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to retrieve memory: ${error.message}`);\n }\n }\n});\n\n// Tool 3: Memory Search\nserver.addTool({\n name: 'memory_search',\n description: 'Search for keys matching a pattern in memory with wildcard support',\n parameters: z.object({\n pattern: z.string().min(1).describe('Search pattern (supports wildcards like * and ?)'),\n namespace: z.string().optional().describe('Memory namespace to search in (searches all if not specified)'),\n limit: z.number().positive().optional().default(10).describe('Maximum number of results to return (1-100)')\n .refine((val) => val >= 1 && val <= 100, { message: 'Limit must be between 1 and 100' })\n }),\n execute: async ({ pattern, namespace, limit }) => {\n try {\n const cmd = [\n 'npx claude-flow@alpha memory search',\n `\"${pattern}\"`,\n namespace ? `--namespace \"${namespace}\"` : '',\n `--limit ${limit}`\n ].filter(Boolean).join(' ');\n\n const result = execSync(cmd, { encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024 });\n\n return JSON.stringify({\n success: true,\n pattern,\n namespace: namespace \|\| 'all',\n limit,\n results: result.trim(),\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to search memory: ${error.message}`);\n }\n }\n});\n\n// Tool: Memory Synthesize - Context synthesis from memory search results\nserver.addTool({\n name: 'memory_synthesize',\n description: 'Search memory and synthesize a coherent context summary with patterns, insights, and recommendations from retrieved episodes',\n parameters: z.object({\n query: z.string().min(1).describe('Search query for finding relevant memories'),\n limit: z.number().min(1).max(50).optional().default(10).describe('Number of memories to synthesize (1-50)'),\n namespace: z.string().optional().default('default').describe('Memory namespace to search'),\n includeRecommendations: z.boolean().optional().default(true).describe('Include actionable recommendations'),\n }),\n execute: async ({ query, limit, namespace, includeRecommendations }: { query: string; limit: number; namespace: string; includeRecommendations: boolean }) => {\n try {\n // Step 1: Retrieve episodes from AgentDB\n const agentDB = await AgentDBService.getInstance();\n const episodes = await agentDB.recallEpisodes(query, limit);\n\n if (episodes.length === 0) {\n return JSON.stringify({\n success: true,\n data: {\n summary: 'No relevant memories found for the given query.',\n patterns: [],\n successRate: 0,\n averageReward: 0,\n recommendations: [],\n keyInsights: [],\n totalMemories: 0,\n },\n timestamp: new Date().toISOString(),\n }, null, 2);\n }\n\n // Step 2: Synthesize using ContextSynthesizer\n let synthesized: any;\n try {\n const { ContextSynthesizer } = await import(\n /* webpackIgnore: true / '../../../../packages/agentdb/src/controllers/ContextSynthesizer.js'\n );\n synthesized = ContextSynthesizer.synthesize(\n episodes.map((ep: any) => ({\n task: ep.task,\n reward: ep.reward,\n success: ep.success,\n critique: ep.critique,\n input: ep.input,\n output: ep.output,\n similarity: ep.similarity,\n })),\n { includeRecommendations, minPatternFrequency: 2 }\n );\n } catch {\n // Fallback: basic synthesis without ContextSynthesizer\n const successCount = episodes.filter((ep: any) => ep.success).length;\n const avgReward = episodes.reduce((sum: number, ep: any) => sum + (ep.reward \|\| 0), 0) / episodes.length;\n synthesized = {\n summary: `Found ${episodes.length} relevant memories with ${(successCount / episodes.length 100).toFixed(0)}% success rate.`,\n patterns: [],\n successRate: successCount / episodes.length,\n averageReward: avgReward,\n recommendations: [],\n keyInsights: [`${episodes.length} episodes found`, `${successCount} successful`],\n totalMemories: episodes.length,\n };\n }\n\n return JSON.stringify({\n success: true,\n data: synthesized,\n timestamp: new Date().toISOString(),\n }, null, 2);\n } catch (error: any) {\n return JSON.stringify({\n success: false,\n error: error.message,\n timestamp: new Date().toISOString(),\n }, null, 2);\n }\n }\n});\n\n// Tool 4: Swarm Init\nserver.addTool({\n name: 'swarm_init',\n description: 'Initialize a multi-agent swarm with specified topology and strategy',\n parameters: z.object({\n topology: z.enum(['mesh', 'hierarchical', 'ring', 'star'])\n .describe('Swarm topology: mesh (peer-to-peer), hierarchical (tree), ring (circular), star (centralized)'),\n maxAgents: z.number().positive().optional().default(8).describe('Maximum number of agents in the swarm (1-100)')\n .refine((val) => val >= 1 && val <= 100, { message: 'maxAgents must be between 1 and 100' }),\n strategy: z.enum(['balanced', 'specialized', 'adaptive']).optional().default('balanced')\n .describe('Agent distribution strategy: balanced (equal), specialized (role-based), adaptive (dynamic)')\n }),\n execute: async ({ topology, maxAgents, strategy }) => {\n try {\n const cmd = `npx claude-flow@alpha swarm init --topology ${topology} --max-agents ${maxAgents} --strategy ${strategy}`;\n const result = execSync(cmd, { encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024 });\n\n return JSON.stringify({\n success: true,\n topology,\n maxAgents,\n strategy,\n message: 'Swarm initialized successfully',\n details: result.trim(),\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to initialize swarm: ${error.message}`);\n }\n }\n});\n\n// Tool 5: Agent Spawn\nserver.addTool({\n name: 'agent_spawn',\n description: 'Spawn a new agent in the swarm with specified type and capabilities',\n parameters: z.object({\n type: z.enum(['researcher', 'coder', 'analyst', 'optimizer', 'coordinator'])\n .describe('Agent type: researcher (data gathering), coder (implementation), analyst (analysis), optimizer (performance), coordinator (orchestration)'),\n capabilities: z.array(z.string()).optional()\n .describe('Specific capabilities for the agent (e.g., [\"python\", \"testing\", \"documentation\"])'),\n name: z.string().optional().describe('Custom agent name/identifier')\n }),\n execute: async ({ type, capabilities, name }) => {\n try {\n const capStr = capabilities ? ` --capabilities \"${capabilities.join(',')}\"` : '';\n const nameStr = name ? ` --name \"${name}\"` : '';\n const cmd = `npx claude-flow@alpha agent spawn --type ${type}${capStr}${nameStr}`;\n const result = execSync(cmd, { encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024 });\n\n return JSON.stringify({\n success: true,\n type,\n capabilities: capabilities \|\| [],\n name: name \|\| `${type}-${Date.now()}`,\n message: 'Agent spawned successfully',\n details: result.trim(),\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to spawn agent: ${error.message}`);\n }\n }\n});\n\n// Tool 6: Task Orchestrate\nserver.addTool({\n name: 'task_orchestrate',\n description: 'Orchestrate a complex task across the swarm with specified strategy and priority',\n parameters: z.object({\n task: z.string().min(1).describe('Task description or instructions for the swarm to execute'),\n strategy: z.enum(['parallel', 'sequential', 'adaptive']).optional().default('adaptive')\n .describe('Execution strategy: parallel (simultaneous), sequential (ordered), adaptive (dynamic based on task)'),\n priority: z.enum(['low', 'medium', 'high', 'critical']).optional().default('medium')\n .describe('Task priority level: low, medium, high, or critical'),\n maxAgents: z.number().positive().optional().describe('Maximum number of agents to use for this task (1-10)')\n .refine((val) => !val \|\| (val >= 1 && val <= 10), { message: 'maxAgents must be between 1 and 10' })\n }),\n execute: async ({ task, strategy, priority, maxAgents }) => {\n try {\n const maxStr = maxAgents ? ` --max-agents ${maxAgents}` : '';\n const cmd = `npx claude-flow@alpha task orchestrate \"${task}\" --strategy ${strategy} --priority ${priority}${maxStr}`;\n const result = execSync(cmd, { encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024, timeout: 300000 });\n\n return JSON.stringify({\n success: true,\n task,\n strategy,\n priority,\n maxAgents: maxAgents \|\| 'auto',\n message: 'Task orchestrated successfully',\n details: result.trim(),\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to orchestrate task: ${error.message}`);\n }\n }\n});\n\n// Tool 7: Agent Execute\nserver.addTool({\n name: 'agent_execute',\n description: 'Execute a specific agent with a task (equivalent to --agent CLI command)',\n parameters: z.object({\n agent: z.string().describe('Agent name to execute'),\n task: z.string().describe('Task description'),\n stream: z.boolean().optional().default(false).describe('Enable streaming output')\n }),\n execute: async ({ agent, task, stream }) => {\n try {\n const streamFlag = stream ? '--stream' : '';\n const cmd = `npx agentic-flow --agent \"${agent}\" --task \"${task}\" ${streamFlag}`.trim();\n const result = execSync(cmd, { encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024, timeout: 300000 });\n\n return JSON.stringify({\n success: true,\n agent,\n task: task.substring(0, 100),\n output: result,\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to execute agent: ${error.message}`);\n }\n }\n});\n\n// Tool 8: Agent Parallel\nserver.addTool({\n name: 'agent_parallel',\n description: 'Run parallel mode with 3 agents (research, code review, data analysis)',\n parameters: z.object({\n topic: z.string().optional().describe('Research topic'),\n diff: z.string().optional().describe('Code diff for review'),\n dataset: z.string().optional().describe('Dataset hint'),\n streaming: z.boolean().optional().default(false).describe('Enable streaming')\n }),\n execute: async ({ topic, diff, dataset, streaming }) => {\n try {\n const env = {\n ...process.env,\n ...(topic && { TOPIC: topic }),\n ...(diff && { DIFF: diff }),\n ...(dataset && { DATASET: dataset }),\n ...(streaming && { ENABLE_STREAMING: 'true' })\n };\n const result = execSync('npx agentic-flow', { encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024, timeout: 300000, env });\n\n return JSON.stringify({\n success: true,\n mode: 'parallel',\n agents: ['research', 'code_review', 'data'],\n output: result,\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to run parallel mode: ${error.message}`);\n }\n }\n});\n\n// Tool 9: Agent List\nserver.addTool({\n name: 'agent_list',\n description: 'List all available agents',\n parameters: z.object({\n format: z.enum(['summary', 'detailed', 'json']).optional().default('summary')\n }),\n execute: async ({ format }) => {\n try {\n const result = execSync('npx agentic-flow --list', { encoding: 'utf-8', maxBuffer: 5 * 1024 * 1024, timeout: 30000 });\n\n if (format === 'detailed') {\n return result;\n }\n\n const agents: any[] = [];\n const lines = result.split('\\n');\n let currentCategory = '';\n\n for (const line of lines) {\n if (line.includes(':') && line.trim().endsWith(':')) {\n currentCategory = line.replace(':', '').trim();\n } else if (line.trim().startsWith('•') \|\| /^\\s{2,}\\w/.test(line)) {\n const match = line.match(/^\\s[•\\s](\\S+)\\s+(.+)$/);\n if (match) {\n agents.push({ name: match[1], description: match[2].trim(), category: currentCategory });\n }\n }\n }\n\n return JSON.stringify({\n success: true,\n count: agents.length,\n agents,\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to list agents: ${error.message}`);\n }\n }\n});\n\n// Tool 10: Add Custom Agent\nserver.addTool({\n name: 'agent_add',\n description: 'Add a new custom agent defined in markdown',\n parameters: z.object({\n name: z.string().describe('Agent name (kebab-case)'),\n description: z.string().describe('Agent description'),\n systemPrompt: z.string().describe('System prompt'),\n category: z.string().optional().default('custom').describe('Category'),\n capabilities: z.array(z.string()).optional().describe('Capabilities')\n }),\n execute: async ({ name, description, systemPrompt, category, capabilities }) => {\n try {\n const { writeFileSync, existsSync, mkdirSync } = await import('fs');\n const { join } = await import('path');\n\n const agentsDir = join(process.cwd(), '.claude', 'agents', category \|\| 'custom');\n if (!existsSync(agentsDir)) mkdirSync(agentsDir, { recursive: true });\n\n const markdown = `# ${name.split('-').map(w => w.charAt(0).toUpperCase() + w.slice(1)).join(' ')}\n\n## Description\n${description}\n\n## System Prompt\n${systemPrompt}\n\n${capabilities && capabilities.length > 0 ? `## Capabilities\\n${capabilities.map(c => `- ${c}`).join('\\n')}\\n` : ''}\n\n## Usage\n\\`\\`\\`bash\nnpx agentic-flow --agent ${name} --task \"Your task\"\n\\`\\`\\`\n\n---\nGenerated: ${new Date().toISOString()}\n`;\n\n const filePath = join(agentsDir, `${name}.md`);\n if (existsSync(filePath)) throw new Error(`Agent '${name}' already exists`);\n\n writeFileSync(filePath, markdown, 'utf8');\n\n return JSON.stringify({\n success: true,\n agent: name,\n category: category \|\| 'custom',\n filePath,\n message: `Agent '${name}' created successfully`,\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to add agent: ${error.message}`);\n }\n }\n});\n\n// Tool 11: Add Custom Command\nserver.addTool({\n name: 'command_add',\n description: 'Add a new custom command defined in markdown',\n parameters: z.object({\n name: z.string().describe('Command name (kebab-case)'),\n description: z.string().describe('Command description'),\n usage: z.string().describe('Usage example'),\n parameters: z.array(z.object({\n name: z.string(),\n type: z.string(),\n required: z.boolean(),\n description: z.string()\n })).optional().describe('Parameters'),\n examples: z.array(z.string()).optional().describe('Examples')\n }),\n execute: async ({ name, description, usage, parameters, examples }) => {\n try {\n const { writeFileSync, existsSync, mkdirSync } = await import('fs');\n const { join } = await import('path');\n\n const commandsDir = join(process.cwd(), '.claude', 'commands');\n if (!existsSync(commandsDir)) mkdirSync(commandsDir, { recursive: true });\n\n const markdown = `# ${name.split('-').map(w => w.charAt(0).toUpperCase() + w.slice(1)).join(' ')} Command\n\n## Description\n${description}\n\n## Usage\n\\`\\`\\`bash\n${usage}\n\\`\\`\\`\n\n${parameters && parameters.length > 0 ? `## Parameters\\n\| Name \| Type \| Required \| Description \|\\n\|------\|------\|----------\|-------------\|\\n${parameters.map(p => `\| \\`${p.name}\\` \| ${p.type} \| ${p.required ? 'Yes' : 'No'} \| ${p.description} \|`).join('\\n')}\\n` : ''}\n\n${examples && examples.length > 0 ? `## Examples\\n\\n${examples.map((ex, i) => `### Example ${i + 1}\\n\\`\\`\\`bash\\n${ex}\\n\\`\\`\\`\\n`).join('\\n')}` : ''}\n\n---\nGenerated: ${new Date().toISOString()}\n`;\n\n const filePath = join(commandsDir, `${name}.md`);\n if (existsSync(filePath)) throw new Error(`Command '${name}' already exists`);\n\n writeFileSync(filePath, markdown, 'utf8');\n\n return JSON.stringify({\n success: true,\n command: name,\n filePath,\n message: `Command '${name}' created successfully`,\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to add command: ${error.message}`);\n }\n }\n});\n\n// ---------------------------------------------------------------------------\n// AgentDB-powered tools (12 new tools using agentdb-service singleton)\n// ---------------------------------------------------------------------------\n\n// Tool 12: memory_episode_store\nserver.addTool({\n name: 'memory_episode_store',\n description: 'Store an agent episode via ReflexionMemory for experience replay',\n parameters: z.object({\n sessionId: z.string().min(1).describe('Session identifier'),\n task: z.string().min(1).describe('Task description'),\n input: z.string().optional().describe('Input provided to the agent'),\n output: z.string().optional().describe('Agent output/response'),\n critique: z.string().optional().describe('Self-critique or reflection'),\n reward: z.number().min(-1).max(1).describe('Reward signal (-1 to 1)'),\n success: z.boolean().describe('Whether the episode was successful'),\n tags: z.array(z.string()).optional().describe('Tags for categorization'),\n }),\n execute: async (params) => {\n try {\n const svc = await AgentDBService.getInstance();\n const id = await svc.storeEpisode(params as EpisodeData);\n return JSON.stringify({ success: true, data: { id }, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 13: memory_episode_recall\nserver.addTool({\n name: 'memory_episode_recall',\n description: 'Recall similar past episodes using semantic search',\n parameters: z.object({\n query: z.string().min(1).describe('Search query describing the task'),\n limit: z.number().positive().optional().default(5).describe('Max results (1-50)'),\n }),\n execute: async ({ query, limit }) => {\n try {\n const svc = await AgentDBService.getInstance();\n const episodes = await svc.recallEpisodes(query, limit);\n return JSON.stringify({ success: true, data: { episodes, count: episodes.length }, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 14: skill_publish\nserver.addTool({\n name: 'skill_publish',\n description: 'Publish a reusable agent skill to the SkillLibrary',\n parameters: z.object({\n name: z.string().min(1).describe('Skill name'),\n description: z.string().optional().describe('Skill description'),\n code: z.string().optional().describe('Skill implementation code'),\n successRate: z.number().min(0).max(1).describe('Success rate (0 to 1)'),\n metadata: z.record(z.unknown()).optional().describe('Additional metadata'),\n }),\n execute: async (params) => {\n try {\n const svc = await AgentDBService.getInstance();\n const id = await svc.publishSkill(params as SkillData);\n return JSON.stringify({ success: true, data: { id, name: params.name }, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 15: skill_find\nserver.addTool({\n name: 'skill_find',\n description: 'Find applicable skills by description via semantic search',\n parameters: z.object({\n description: z.string().min(1).describe('Task description to match skills against'),\n limit: z.number().positive().optional().default(5).describe('Max results'),\n }),\n execute: async ({ description, limit }) => {\n try {\n const svc = await AgentDBService.getInstance();\n const skills = await svc.findSkills(description, limit);\n return JSON.stringify({ success: true, data: { skills, count: skills.length }, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 16: route_semantic\nserver.addTool({\n name: 'route_semantic',\n description: 'Route a task to the optimal handler tier using semantic analysis (ADR-026)',\n parameters: z.object({\n taskDescription: z.string().min(1).describe('Task description to analyze for routing'),\n }),\n execute: async ({ taskDescription }) => {\n try {\n const svc = await AgentDBService.getInstance();\n const route = await svc.routeSemantic(taskDescription);\n return JSON.stringify({ success: true, data: route, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 17: route_causal\nserver.addTool({\n name: 'route_causal',\n description: 'Causal routing via CausalMemoryGraph to find optimal agent path',\n parameters: z.object({\n taskType: z.string().min(1).describe('Type of task to route'),\n agentTypes: z.array(z.string()).min(1).describe('Candidate agent types to consider'),\n }),\n execute: async ({ taskType, agentTypes }) => {\n try {\n const svc = await AgentDBService.getInstance();\n const patterns = await svc.searchPatterns(taskType, 10);\n const ranked = agentTypes.map((agent) => {\n const matching = patterns.filter((p) => p.approach.toLowerCase().includes(agent.toLowerCase()));\n const avgSuccess = matching.length > 0\n ? matching.reduce((sum, p) => sum + p.successRate, 0) / matching.length\n : 0.5;\n return { agent, score: avgSuccess, matchCount: matching.length };\n }).sort((a, b) => b.score - a.score);\n return JSON.stringify({ success: true, data: { taskType, ranked }, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 18: attention_coordinate\nserver.addTool({\n name: 'attention_coordinate',\n description: 'Coordinate agents using attention-weighted task assignment',\n parameters: z.object({\n agents: z.array(z.string()).min(1).describe('Agent names to coordinate'),\n task: z.string().min(1).describe('Task to assign'),\n mechanism: z.enum(['softmax', 'uniform', 'priority']).optional().default('softmax')\n .describe('Attention mechanism: softmax, uniform, or priority'),\n }),\n execute: async ({ agents, task, mechanism }) => {\n try {\n const svc = await AgentDBService.getInstance();\n const skills = await svc.findSkills(task, agents.length);\n const weights = agents.map((agent, i) => {\n const skill = skills[i];\n if (mechanism === 'uniform') return 1 / agents.length;\n if (mechanism === 'priority') return 1 / (i + 1);\n return skill ? skill.successRate : 1 / agents.length;\n });\n const sum = weights.reduce((a, b) => a + b, 0) \|\| 1;\n const assignments = agents.map((agent, i) => ({\n agent, weight: weights[i] / sum, task,\n }));\n return JSON.stringify({ success: true, data: { mechanism, assignments }, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 19: graph_query\nserver.addTool({\n name: 'graph_query',\n description: 'Query the agent knowledge graph',\n parameters: z.object({\n query: z.string().min(1).describe('Graph query string (natural language or keyword)'),\n limit: z.number().positive().optional().default(10).describe('Max results'),\n }),\n execute: async ({ query, limit }) => {\n try {\n const svc = await AgentDBService.getInstance();\n const results = await svc.queryGraph(query);\n return JSON.stringify({ success: true, data: { results: results.slice(0, limit), count: results.length }, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 20: graph_store\nserver.addTool({\n name: 'graph_store',\n description: 'Store nodes and edges in the agent knowledge graph',\n parameters: z.object({\n nodes: z.array(z.object({\n id: z.string(), type: z.string(), label: z.string().optional(),\n })).describe('Graph nodes'),\n edges: z.array(z.object({\n from: z.string(), to: z.string(),\n fromType: z.string().optional(), toType: z.string().optional(),\n similarity: z.number().optional(), confidence: z.number().optional(),\n })).describe('Graph edges'),\n }),\n execute: async ({ nodes, edges }) => {\n try {\n const svc = await AgentDBService.getInstance();\n await svc.storeGraphState(nodes, edges);\n return JSON.stringify({ success: true, data: { nodesStored: nodes.length, edgesStored: edges.length }, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 21: learning_trajectory\nserver.addTool({\n name: 'learning_trajectory',\n description: 'Record a learning trajectory (state-action-reward sequence)',\n parameters: z.object({\n steps: z.array(z.object({\n state: z.string(), action: z.string(), reward: z.number(),\n nextState: z.string().optional(),\n })).min(1).describe('Trajectory steps'),\n reward: z.number().describe('Total trajectory reward'),\n }),\n execute: async ({ steps, reward }) => {\n try {\n const svc = await AgentDBService.getInstance();\n await svc.recordTrajectory(steps as TrajectoryStep[], reward);\n return JSON.stringify({ success: true, data: { stepsRecorded: steps.length, totalReward: reward }, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 22: learning_predict\nserver.addTool({\n name: 'learning_predict',\n description: 'Predict the optimal action for a given state using learned policy',\n parameters: z.object({\n state: z.string().min(1).describe('Current state description'),\n }),\n execute: async ({ state }) => {\n try {\n const svc = await AgentDBService.getInstance();\n const prediction = await svc.predictAction(state);\n return JSON.stringify({ success: true, data: prediction, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Tool 23: explain_decision\nserver.addTool({\n name: 'explain_decision',\n description: 'Get an explainable Merkle proof for a recall decision',\n parameters: z.object({\n decisionId: z.string().min(1).describe('Decision/query ID to explain'),\n }),\n execute: async ({ decisionId }) => {\n try {\n const svc = await AgentDBService.getInstance();\n const explanation = await svc.explainDecision(decisionId);\n return JSON.stringify({ success: true, data: explanation, timestamp: new Date().toISOString() }, null, 2);\n } catch (error: any) {\n return JSON.stringify({ success: false, error: error.message, timestamp: new Date().toISOString() }, null, 2);\n }\n }\n});\n\n// Register modular tool sets (120+ additional tools)\n// Note: Infrastructure and Workflow tools will use DirectCallBridge when available\nregisterSessionTools(server); // 8 tools\nregisterGitHubTools(server); // 8 tools\nregisterNeuralTools(server); // 6 tools\nregisterRuVectorTools(server); // 6 tools\nregisterSonaRvfTools(server); // 11 tools\nregisterInfrastructureTools(server, () => directBridge); // 13 tools (DirectCallBridge-enabled)\nregisterAutopilotTools(server); // 10 tools\nregisterPerformanceTools(server); // 15 tools\nregisterWorkflowTools(server, () => directBridge); // 11 tools (DirectCallBridge-enabled)\nregisterDAATools(server); // 10 tools\nregisterAttentionTools(server); // 3 tools\nregisterHiddenControllerTools(server); // 17 tools (8 controllers)\nregisterQUICTools(server); // 7 tools (QUIC protocol: sync, latency, health, pool, 0rtt, multiplex)\nregisterRVFTools(server); // 5 tools (RVF optimizer - ADR-063)\nregisterCostOptimizerTools(server); // 4 tools (Cost optimizer - ADR-064)\nregisterStreamingTools(server); // 10 tools (Streaming architecture - ADR-065 P1-3)\nregisterSonaTools(server); // 8 tools (SONA RL Loop - ADR-065 P1-2)\nregisterMemoryTools(server); // 6 tools (Hierarchical Memory - ADR-066 P2-3)\nregisterQuantizationTools(server); // 8 tools (Model Quantization - ADR-066 P2-2)\nregisterExplainabilityTools(server); // 10 tools (Explainability Dashboard - ADR-066 P2-4)\n\nconsole.error('Registered 208+ tools successfully');\nconsole.error('Starting stdio transport...');\n\n// Start with stdio transport\nserver.start({ transportType: 'stdio' }).then(() => {\n console.error('FastMCP Full Server running on stdio');\n}).catch((error) => {\n console.error('Failed to start server:', error);\n process.exit(1);\n});\n"]}
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node\n/* eslint-disable @typescript-eslint/no-explicit-any -- pre-existing catch(error: any) handlers; outside scope of CWE-78 fix /\n// Full FastMCP server with stdio transport - All 11 claude-flow-sdk tools\nimport { FastMCP } from 'fastmcp';\nimport { z } from 'zod';\nimport { execFileSync } from 'child_process';\nimport { assertSlug, resolveAgentDir, resolveWithin } from '../../../utils/path-safety.js';\n\n// Security: All shell-outs use execFileSync with argv arrays (shell: false) to\n// prevent OS command injection via tool parameters (CWE-78). Do NOT reintroduce\n// execSync with template-string interpolation here.\nconst NPX_EXEC_OPTS = { shell: false as const };\n\nconsole.error('🚀 Starting FastMCP Full Server (stdio transport)...');\nconsole.error('📦 Loading 11 tools: memory (3), swarm (3), agent (5)');\n\n// Create server\nconst server = new FastMCP({\n name: 'fastmcp-stdio-full',\n version: '1.0.0'\n});\n\n// Tool 1: Memory Store\nserver.addTool({\n name: 'memory_store',\n description: 'Store a value in persistent memory with optional namespace and TTL',\n parameters: z.object({\n key: z.string().min(1).describe('Memory key'),\n value: z.string().describe('Value to store'),\n namespace: z.string().optional().default('default').describe('Memory namespace'),\n ttl: z.number().positive().optional().describe('Time-to-live in seconds')\n }),\n execute: async ({ key, value, namespace, ttl }) => {\n try {\n const args = ['claude-flow@alpha', 'memory', 'store', key, value, '--namespace', namespace];\n if (ttl) args.push('--ttl', String(ttl));\n\n execFileSync('npx', args, { ...NPX_EXEC_OPTS, encoding: 'utf-8', maxBuffer: 10 1024 * 1024 });\n\n return JSON.stringify({\n success: true,\n key,\n namespace,\n size: value.length,\n ttl,\n timestamp: new Date().toISOString(),\n message: 'Memory stored successfully'\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to store memory: ${error.message}`);\n }\n }\n});\n\n// Tool 2: Memory Retrieve\nserver.addTool({\n name: 'memory_retrieve',\n description: 'Retrieve a value from persistent memory',\n parameters: z.object({\n key: z.string().min(1).describe('Memory key'),\n namespace: z.string().optional().default('default').describe('Memory namespace')\n }),\n execute: async ({ key, namespace }) => {\n try {\n const result = execFileSync(\n 'npx',\n ['claude-flow@alpha', 'memory', 'retrieve', key, '--namespace', namespace],\n { ...NPX_EXEC_OPTS, encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024 }\n );\n\n return JSON.stringify({\n success: true,\n key,\n namespace,\n value: result.trim(),\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to retrieve memory: ${error.message}`);\n }\n }\n});\n\n// Tool 3: Memory Search\nserver.addTool({\n name: 'memory_search',\n description: 'Search for keys matching a pattern in memory with wildcard support',\n parameters: z.object({\n pattern: z.string().min(1).describe('Search pattern (supports wildcards like * and ?)'),\n namespace: z.string().optional().describe('Memory namespace to search in (searches all if not specified)'),\n limit: z.number().positive().optional().default(10).describe('Maximum number of results to return (1-100)')\n .refine((val) => val >= 1 && val <= 100, { message: 'Limit must be between 1 and 100' })\n }),\n execute: async ({ pattern, namespace, limit }) => {\n try {\n const args = ['claude-flow@alpha', 'memory', 'search', pattern];\n if (namespace) args.push('--namespace', namespace);\n args.push('--limit', String(limit));\n\n const result = execFileSync('npx', args, { ...NPX_EXEC_OPTS, encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024 });\n\n return JSON.stringify({\n success: true,\n pattern,\n namespace: namespace \|\| 'all',\n limit,\n results: result.trim(),\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to search memory: ${error.message}`);\n }\n }\n});\n\n// Tool 4: Swarm Init\nserver.addTool({\n name: 'swarm_init',\n description: 'Initialize a multi-agent swarm with specified topology and strategy',\n parameters: z.object({\n topology: z.enum(['mesh', 'hierarchical', 'ring', 'star'])\n .describe('Swarm topology: mesh (peer-to-peer), hierarchical (tree), ring (circular), star (centralized)'),\n maxAgents: z.number().positive().optional().default(8).describe('Maximum number of agents in the swarm (1-100)')\n .refine((val) => val >= 1 && val <= 100, { message: 'maxAgents must be between 1 and 100' }),\n strategy: z.enum(['balanced', 'specialized', 'adaptive']).optional().default('balanced')\n .describe('Agent distribution strategy: balanced (equal), specialized (role-based), adaptive (dynamic)')\n }),\n execute: async ({ topology, maxAgents, strategy }) => {\n try {\n const result = execFileSync(\n 'npx',\n ['claude-flow@alpha', 'swarm', 'init', '--topology', topology, '--max-agents', String(maxAgents), '--strategy', strategy],\n { ...NPX_EXEC_OPTS, encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024 }\n );\n\n return JSON.stringify({\n success: true,\n topology,\n maxAgents,\n strategy,\n message: 'Swarm initialized successfully',\n details: result.trim(),\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to initialize swarm: ${error.message}`);\n }\n }\n});\n\n// Tool 5: Agent Spawn\nserver.addTool({\n name: 'agent_spawn',\n description: 'Spawn a new agent in the swarm with specified type and capabilities',\n parameters: z.object({\n type: z.enum(['researcher', 'coder', 'analyst', 'optimizer', 'coordinator'])\n .describe('Agent type: researcher (data gathering), coder (implementation), analyst (analysis), optimizer (performance), coordinator (orchestration)'),\n capabilities: z.array(z.string()).optional()\n .describe('Specific capabilities for the agent (e.g., [\"python\", \"testing\", \"documentation\"])'),\n name: z.string().optional().describe('Custom agent name/identifier')\n }),\n execute: async ({ type, capabilities, name }) => {\n try {\n const args = ['claude-flow@alpha', 'agent', 'spawn', '--type', type];\n if (capabilities && capabilities.length > 0) args.push('--capabilities', capabilities.join(','));\n if (name) args.push('--name', name);\n const result = execFileSync('npx', args, { ...NPX_EXEC_OPTS, encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024 });\n\n return JSON.stringify({\n success: true,\n type,\n capabilities: capabilities \|\| [],\n name: name \|\| `${type}-${Date.now()}`,\n message: 'Agent spawned successfully',\n details: result.trim(),\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to spawn agent: ${error.message}`);\n }\n }\n});\n\n// Tool 6: Task Orchestrate\nserver.addTool({\n name: 'task_orchestrate',\n description: 'Orchestrate a complex task across the swarm with specified strategy and priority',\n parameters: z.object({\n task: z.string().min(1).describe('Task description or instructions for the swarm to execute'),\n strategy: z.enum(['parallel', 'sequential', 'adaptive']).optional().default('adaptive')\n .describe('Execution strategy: parallel (simultaneous), sequential (ordered), adaptive (dynamic based on task)'),\n priority: z.enum(['low', 'medium', 'high', 'critical']).optional().default('medium')\n .describe('Task priority level: low, medium, high, or critical'),\n maxAgents: z.number().positive().optional().describe('Maximum number of agents to use for this task (1-10)')\n .refine((val) => !val \|\| (val >= 1 && val <= 10), { message: 'maxAgents must be between 1 and 10' })\n }),\n execute: async ({ task, strategy, priority, maxAgents }) => {\n try {\n const args = ['claude-flow@alpha', 'task', 'orchestrate', task, '--strategy', strategy, '--priority', priority];\n if (maxAgents) args.push('--max-agents', String(maxAgents));\n const result = execFileSync('npx', args, { ...NPX_EXEC_OPTS, encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024, timeout: 300000 });\n\n return JSON.stringify({\n success: true,\n task,\n strategy,\n priority,\n maxAgents: maxAgents \|\| 'auto',\n message: 'Task orchestrated successfully',\n details: result.trim(),\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to orchestrate task: ${error.message}`);\n }\n }\n});\n\n// Tool 7: Agent Execute\nserver.addTool({\n name: 'agent_execute',\n description: 'Execute a specific agent with a task (equivalent to --agent CLI command)',\n parameters: z.object({\n agent: z.string().describe('Agent name to execute'),\n task: z.string().describe('Task description'),\n stream: z.boolean().optional().default(false).describe('Enable streaming output')\n }),\n execute: async ({ agent, task, stream }) => {\n try {\n const args = ['agentic-flow', '--agent', agent, '--task', task];\n if (stream) args.push('--stream');\n const result = execFileSync('npx', args, { ...NPX_EXEC_OPTS, encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024, timeout: 300000 });\n\n return JSON.stringify({\n success: true,\n agent,\n task: task.substring(0, 100),\n output: result,\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to execute agent: ${error.message}`);\n }\n }\n});\n\n// Tool 8: Agent Parallel\nserver.addTool({\n name: 'agent_parallel',\n description: 'Run parallel mode with 3 agents (research, code review, data analysis)',\n parameters: z.object({\n topic: z.string().optional().describe('Research topic'),\n diff: z.string().optional().describe('Code diff for review'),\n dataset: z.string().optional().describe('Dataset hint'),\n streaming: z.boolean().optional().default(false).describe('Enable streaming')\n }),\n execute: async ({ topic, diff, dataset, streaming }) => {\n try {\n const env = {\n ...process.env,\n ...(topic && { TOPIC: topic }),\n ...(diff && { DIFF: diff }),\n ...(dataset && { DATASET: dataset }),\n ...(streaming && { ENABLE_STREAMING: 'true' })\n };\n const result = execFileSync('npx', ['agentic-flow'], { ...NPX_EXEC_OPTS, encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024, timeout: 300000, env });\n\n return JSON.stringify({\n success: true,\n mode: 'parallel',\n agents: ['research', 'code_review', 'data'],\n output: result,\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to run parallel mode: ${error.message}`);\n }\n }\n});\n\n// Tool 9: Agent List\nserver.addTool({\n name: 'agent_list',\n description: 'List all available agents',\n parameters: z.object({\n format: z.enum(['summary', 'detailed', 'json']).optional().default('summary')\n }),\n execute: async ({ format }) => {\n try {\n const result = execFileSync('npx', ['agentic-flow', '--list'], { ...NPX_EXEC_OPTS, encoding: 'utf-8', maxBuffer: 5 * 1024 * 1024, timeout: 30000 });\n\n if (format === 'detailed') {\n return result;\n }\n\n const agents: any[] = [];\n const lines = result.split('\\n');\n let currentCategory = '';\n\n for (const line of lines) {\n if (line.includes(':') && line.trim().endsWith(':')) {\n currentCategory = line.replace(':', '').trim();\n } else if (line.trim().startsWith('•') \|\| /^\\s{2,}\\w/.test(line)) {\n const match = line.match(/^\\s[•\\s](\\S+)\\s+(.+)$/);\n if (match) {\n agents.push({ name: match[1], description: match[2].trim(), category: currentCategory });\n }\n }\n }\n\n return JSON.stringify({\n success: true,\n count: agents.length,\n agents,\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to list agents: ${error.message}`);\n }\n }\n});\n\n// Tool 10: Add Custom Agent\nserver.addTool({\n name: 'agent_add',\n description: 'Add a new custom agent defined in markdown',\n parameters: z.object({\n name: z.string().describe('Agent name (kebab-case)'),\n description: z.string().describe('Agent description'),\n systemPrompt: z.string().describe('System prompt'),\n category: z.string().optional().default('custom').describe('Category'),\n capabilities: z.array(z.string()).optional().describe('Capabilities')\n }),\n execute: async ({ name, description, systemPrompt, category, capabilities }) => {\n try {\n const { writeFileSync, existsSync, mkdirSync } = await import('fs');\n const { join } = await import('path');\n\n // name and category become path segments: slugs only, kept under .claude/agents\n assertSlug(name, 'agent name');\n const agentsDir = resolveAgentDir(category \|\| 'custom');\n if (!existsSync(agentsDir)) mkdirSync(agentsDir, { recursive: true });\n\n const markdown = `# ${name.split('-').map(w => w.charAt(0).toUpperCase() + w.slice(1)).join(' ')}\n\n## Description\n${description}\n\n## System Prompt\n${systemPrompt}\n\n${capabilities && capabilities.length > 0 ? `## Capabilities\\n${capabilities.map(c => `- ${c}`).join('\\n')}\\n` : ''}\n\n## Usage\n\\`\\`\\`bash\nnpx agentic-flow --agent ${name} --task \"Your task\"\n\\`\\`\\`\n\n---\nGenerated: ${new Date().toISOString()}\n`;\n\n const filePath = resolveWithin(agentsDir, `${name}.md`);\n if (existsSync(filePath)) throw new Error(`Agent '${name}' already exists`);\n\n writeFileSync(filePath, markdown, 'utf8');\n\n return JSON.stringify({\n success: true,\n agent: name,\n category: category \|\| 'custom',\n filePath,\n message: `Agent '${name}' created successfully`,\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to add agent: ${error.message}`);\n }\n }\n});\n\n// Tool 11: Add Custom Command\nserver.addTool({\n name: 'command_add',\n description: 'Add a new custom command defined in markdown',\n parameters: z.object({\n name: z.string().describe('Command name (kebab-case)'),\n description: z.string().describe('Command description'),\n usage: z.string().describe('Usage example'),\n parameters: z.array(z.object({\n name: z.string(),\n type: z.string(),\n required: z.boolean(),\n description: z.string()\n })).optional().describe('Parameters'),\n examples: z.array(z.string()).optional().describe('Examples')\n }),\n execute: async ({ name, description, usage, parameters, examples }) => {\n try {\n const { writeFileSync, existsSync, mkdirSync } = await import('fs');\n const { join } = await import('path');\n\n assertSlug(name, 'command name');\n const commandsDir = join(process.cwd(), '.claude', 'commands');\n if (!existsSync(commandsDir)) mkdirSync(commandsDir, { recursive: true });\n\n const markdown = `# ${name.split('-').map(w => w.charAt(0).toUpperCase() + w.slice(1)).join(' ')} Command\n\n## Description\n${description}\n\n## Usage\n\\`\\`\\`bash\n${usage}\n\\`\\`\\`\n\n${parameters && parameters.length > 0 ? `## Parameters\\n\| Name \| Type \| Required \| Description \|\\n\|------\|------\|----------\|-------------\|\\n${parameters.map(p => `\| \\`${p.name}\\` \| ${p.type} \| ${p.required ? 'Yes' : 'No'} \| ${p.description} \|`).join('\\n')}\\n` : ''}\n\n${examples && examples.length > 0 ? `## Examples\\n\\n${examples.map((ex, i) => `### Example ${i + 1}\\n\\`\\`\\`bash\\n${ex}\\n\\`\\`\\`\\n`).join('\\n')}` : ''}\n\n---\nGenerated: ${new Date().toISOString()}\n`;\n\n const filePath = resolveWithin(commandsDir, `${name}.md`);\n if (existsSync(filePath)) throw new Error(`Command '${name}' already exists`);\n\n writeFileSync(filePath, markdown, 'utf8');\n\n return JSON.stringify({\n success: true,\n command: name,\n filePath,\n message: `Command '${name}' created successfully`,\n timestamp: new Date().toISOString()\n }, null, 2);\n } catch (error: any) {\n throw new Error(`Failed to add command: ${error.message}`);\n }\n }\n});\n\nconsole.error('✅ Registered 11 tools successfully');\nconsole.error('🔌 Starting stdio transport...');\n\n// Start with stdio transport\nserver.start({ transportType: 'stdio' }).then(() => {\n console.error('✅ FastMCP Full Server running on stdio');\n}).catch((error) => {\n console.error('❌ Failed to start server:', error);\n process.exit(1);\n});\n"]}

package/dist/mcp/fastmcp/tools/agent/add-agent.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp/fastmcp/tools/agent/add-agent.js CHANGED Viewed

@@ -1,6 +1,7 @@
 import { z } from 'zod';
 import { writeFileSync, existsSync, mkdirSync } from 'fs';
 import { join } from 'path';
+import { resolveAgentDir } from '../../../../utils/path-safety.js';
 const addAgentSchema = z.object({
     name: z.string().describe('Agent name (kebab-case, e.g., custom-researcher)'),
     description: z.string().describe('Agent description'),
@@ -20,8 +21,8 @@ export const addAgentTool = {
             if (!/^[a-z0-9-]+$/.test(name)) {
                 throw new Error('Agent name must be kebab-case (lowercase, numbers, hyphens only)');
             }
-            // Create agents directory if it doesn't exist
-            const agentsDir = join(process.cwd(), '.claude', 'agents', category);
+            // Create agents directory if it doesn't exist (category validated, kept under .claude/agents)
+            const agentsDir = resolveAgentDir(category);
             if (!existsSync(agentsDir)) {
                 mkdirSync(agentsDir, { recursive: true });
             }

package/dist/mcp/fastmcp/tools/agent/add-agent.js.map CHANGED Viewed

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{ z } from 'zod';\nimport { ToolDefinition, ToolContext } from '../../types/index.js';\nimport { writeFileSync, existsSync, mkdirSync } from 'fs';\nimport { join } from 'path';\n\nconst addAgentSchema = z.object({\n name: z.string().describe('Agent name (kebab-case, e.g., custom-researcher)'),\n description: z.string().describe('Agent description'),\n systemPrompt: z.string().describe('System prompt/instructions for the agent'),\n category: z.string().optional().default('custom').describe('Agent category'),\n capabilities: z.array(z.string()).optional().describe('Agent capabilities/features'),\n outputFormat: z.string().optional().describe('Expected output format')\n});\n\nexport const addAgentTool: ToolDefinition = {\n name: 'agent_add',\n description: 'Add a new custom agent defined in markdown format',\n parameters: addAgentSchema,\n\n async execute({ name, description, systemPrompt, category, capabilities, outputFormat }: z.infer<typeof addAgentSchema>, { onProgress }: ToolContext) {\n try {\n onProgress?.({ progress: 0.2, message: `Creating custom agent: ${name}` });\n\n // Validate name format\n if (!/^[a-z0-9-]+$/.test(name)) {\n throw new Error('Agent name must be kebab-case (lowercase, numbers, hyphens only)');\n }\n\n // Create agents directory if it doesn't exist\n const agentsDir = ~~join~~(~~process.cwd(), '.claude', 'agents',~~ category);\n if (!existsSync(agentsDir)) {\n mkdirSync(agentsDir, { recursive: true });\n }\n\n onProgress?.({ progress: 0.4, message: 'Generating agent markdown...' });\n\n // Generate markdown content\n const markdown = `# ${name.split('-').map(w => w.charAt(0).toUpperCase() + w.slice(1)).join(' ')}\n\n## Description\n${description}\n\n## System Prompt\n${systemPrompt}\n\n${capabilities && capabilities.length > 0 ? `## Capabilities\n${capabilities.map(c => `- ${c}`).join('\\n')}\n` : ''}\n\n${outputFormat ? `## Output Format\n${outputFormat}\n` : ''}\n\n## Usage\n\\`\\`\\`bash\nnpx agentic-flow --agent ${name} --task \"Your task here\"\n\\`\\`\\`\n\n## MCP Tool Usage\n\\`\\`\\`json\n{\n \"name\": \"agent_execute\",\n \"arguments\": {\n \"agent\": \"${name}\",\n \"task\": \"Your task here\",\n \"stream\": false\n }\n}\n\\`\\`\\`\n\n---\nGenerated: ${new Date().toISOString()}\nCategory: ${category}\n`;\n\n const filePath = join(agentsDir, `${name}.md`);\n\n // Check if agent already exists\n if (existsSync(filePath)) {\n throw new Error(`Agent '${name}' already exists at ${filePath}`);\n }\n\n onProgress?.({ progress: 0.7, message: 'Writing agent file...' });\n\n // Write the markdown file\n writeFileSync(filePath, markdown, 'utf8');\n\n onProgress?.({ progress: 1.0, message: 'Agent created successfully' });\n\n return {\n content: [{\n type: 'text',\n text: JSON.stringify({\n success: true,\n agent: name,\n category,\n filePath,\n description,\n capabilities: capabilities \|\| [],\n message: `Agent '${name}' created successfully at ${filePath}`,\n timestamp: new Date().toISOString()\n }, null, 2)\n }]\n };\n } catch (error: any) {\n return {\n content: [{\n type: 'text',\n text: JSON.stringify({\n success: false,\n agent: name,\n error: error.message,\n timestamp: new Date().toISOString()\n }, null, 2)\n }],\n isError: true\n };\n }\n }\n};\n"]}
1	+ 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outputFormat }: z.infer<typeof addAgentSchema>, { onProgress }: ToolContext) {\n try {\n onProgress?.({ progress: 0.2, message: `Creating custom agent: ${name}` });\n\n // Validate name format\n if (!/^[a-z0-9-]+$/.test(name)) {\n throw new Error('Agent name must be kebab-case (lowercase, numbers, hyphens only)');\n }\n\n // Create agents directory if it doesn't exist (category validated, kept under .claude/agents)\n const agentsDir = resolveAgentDir(category);\n if (!existsSync(agentsDir)) {\n mkdirSync(agentsDir, { recursive: true });\n }\n\n onProgress?.({ progress: 0.4, message: 'Generating agent markdown...' });\n\n // Generate markdown content\n const markdown = `# ${name.split('-').map(w => w.charAt(0).toUpperCase() + w.slice(1)).join(' ')}\n\n## Description\n${description}\n\n## System Prompt\n${systemPrompt}\n\n${capabilities && capabilities.length > 0 ? `## Capabilities\n${capabilities.map(c => `- ${c}`).join('\\n')}\n` : ''}\n\n${outputFormat ? `## Output Format\n${outputFormat}\n` : ''}\n\n## Usage\n\\`\\`\\`bash\nnpx agentic-flow --agent ${name} --task \"Your task here\"\n\\`\\`\\`\n\n## MCP Tool Usage\n\\`\\`\\`json\n{\n \"name\": \"agent_execute\",\n \"arguments\": {\n \"agent\": \"${name}\",\n \"task\": \"Your task here\",\n \"stream\": false\n }\n}\n\\`\\`\\`\n\n---\nGenerated: ${new Date().toISOString()}\nCategory: ${category}\n`;\n\n const filePath = join(agentsDir, `${name}.md`);\n\n // Check if agent already exists\n if (existsSync(filePath)) {\n throw new Error(`Agent '${name}' already exists at ${filePath}`);\n }\n\n onProgress?.({ progress: 0.7, message: 'Writing agent file...' });\n\n // Write the markdown file\n writeFileSync(filePath, markdown, 'utf8');\n\n onProgress?.({ progress: 1.0, message: 'Agent created successfully' });\n\n return {\n content: [{\n type: 'text',\n text: JSON.stringify({\n success: true,\n agent: name,\n category,\n filePath,\n description,\n capabilities: capabilities \|\| [],\n message: `Agent '${name}' created successfully at ${filePath}`,\n timestamp: new Date().toISOString()\n }, null, 2)\n }]\n };\n } catch (error: any) {\n return {\n content: [{\n type: 'text',\n text: JSON.stringify({\n success: false,\n agent: name,\n error: error.message,\n timestamp: new Date().toISOString()\n }, null, 2)\n }],\n isError: true\n };\n }\n }\n};\n"]}

package/dist/mcp/fastmcp/tools/agent/execute.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"execute.d.ts","sourceRoot":"","sources":["../../../../../src/mcp/fastmcp/tools/agent/execute.ts"],"names":[],"mappings":"~~AACA~~,OAAO,EAAE,cAAc,EAAe,MAAM,sBAAsB,CAAC;AASnE,eAAO,MAAM,gBAAgB,EAAE,~~cAqD9B~~,CAAC"}
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package/dist/mcp/fastmcp/tools/agent/execute.js CHANGED Viewed

@@ -1,5 +1,6 @@
+/* eslint-disable @typescript-eslint/no-explicit-any -- pre-existing catch(error: any) handlers; outside scope of CWE-78 fix */
 import { z } from 'zod';
-import { execSync } from 'child_process';
+import { execFileSync } from 'child_process';
 const executeAgentSchema = z.object({
     agent: z.string().describe('Agent name to execute (e.g., coder, researcher, reviewer)'),
     task: z.string().describe('Task description for the agent'),
@@ -12,12 +13,14 @@ export const executeAgentTool = {
     async execute({ agent, task, stream }, { onProgress }) {
         try {
             onProgress?.({ progress: 0.1, message: `Starting agent: ${agent}` });
-            // Build command
-            const streamFlag = stream ? '--stream' : '';
-            const cmd = `npx agentic-flow --agent "${agent}" --task "${task}" ${streamFlag}`.trim();
+            // Security (CWE-78): use execFileSync with argv; `agent` and `task` are attacker-influenceable.
+            const args = ['agentic-flow', '--agent', agent, '--task', task];
+            if (stream)
+                args.push('--stream');
             onProgress?.({ progress: 0.3, message: 'Executing agent...' });
             // Execute with timeout and capture output
-            const result = execSync(cmd, {
+            const result = execFileSync('npx', args, {
+                shell: false,
                 encoding: 'utf8',
                 maxBuffer: 10 * 1024 * 1024, // 10MB buffer
                 timeout: 300000, // 5 minute timeout

package/dist/mcp/fastmcp/tools/agent/execute.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp/fastmcp/tools/agent/list.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"list.d.ts","sourceRoot":"","sources":["../../../../../src/mcp/fastmcp/tools/agent/list.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,cAAc,EAAe,MAAM,sBAAsB,CAAC;AAQnE,eAAO,MAAM,cAAc,EAAE,cAgF5B,CAAC"}

package/dist/mcp/fastmcp/tools/agent/list.js CHANGED Viewed

@@ -1,5 +1,6 @@
+/* eslint-disable @typescript-eslint/no-explicit-any -- pre-existing catch(error: any) handlers; outside scope of CWE-78 fix */
 import { z } from 'zod';
-import { execSync } from 'child_process';
+import { execFileSync } from 'child_process';
 const listAgentsSchema = z.object({
     format: z.enum(['summary', 'detailed', 'json']).optional().default('summary')
         .describe('Output format for agent list')
@@ -12,7 +13,8 @@ export const listAgentsTool = {
         try {
             onProgress?.({ progress: 0.3, message: 'Loading available agents...' });
             // Execute list command
-            const result = execSync('npx agentic-flow --list', {
+            const result = execFileSync('npx', ['agentic-flow', '--list'], {
+                shell: false,
                 encoding: 'utf8',
                 maxBuffer: 5 * 1024 * 1024,
                 timeout: 30000

package/dist/mcp/fastmcp/tools/agent/list.js.map CHANGED Viewed

	@@ -1 +1 @@
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'...' : '')\n })),\n timestamp: new Date().toISOString()\n }, null, 2);\n }\n\n return {\n content: [{\n type: 'text',\n text: output\n }]\n };\n } catch (error: any) {\n return {\n content: [{\n type: 'text',\n text: JSON.stringify({\n success: false,\n error: error.message,\n stderr: error.stderr?.toString(),\n timestamp: new Date().toISOString()\n }, null, 2)\n }],\n isError: true\n };\n }\n }\n};\n"]}
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package/dist/mcp/fastmcp/tools/agent/parallel.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp/fastmcp/tools/agent/parallel.js CHANGED Viewed

@@ -1,5 +1,6 @@
+/* eslint-disable @typescript-eslint/no-explicit-any -- pre-existing catch(error: any) handlers; outside scope of CWE-78 fix */
 import { z } from 'zod';
-import { execSync } from 'child_process';
+import { execFileSync } from 'child_process';
 const parallelModeSchema = z.object({
     topic: z.string().optional().describe('Research topic for parallel mode'),
     diff: z.string().optional().describe('Code diff for review'),
@@ -23,7 +24,8 @@ export const parallelModeTool = {
             };
             onProgress?.({ progress: 0.3, message: 'Executing 3 agents in parallel...' });
             // Execute parallel mode
-            const result = execSync('npx agentic-flow', {
+            const result = execFileSync('npx', ['agentic-flow'], {
+                shell: false,
                 encoding: 'utf8',
                 maxBuffer: 10 * 1024 * 1024,
                 timeout: 300000,

package/dist/mcp/fastmcp/tools/agent/parallel.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"parallel.js","sourceRoot":"","sources":["../../../../../src/mcp/fastmcp/tools/agent/parallel.ts"],"names":[],"mappings":"AAAA,+HAA+H;AAC/H,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAExB,OAAO,EAAE,YAAY,EAAE,MAAM,eAAe,CAAC;AAE7C,MAAM,kBAAkB,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,kCAAkC,CAAC;IACzE,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,sBAAsB,CAAC;IAC5D,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,2BAA2B,CAAC;IACpE,SAAS,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,QAAQ,CAAC,yBAAyB,CAAC;CACrF,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,gBAAgB,GAAmB;IAC9C,IAAI,EAAE,gBAAgB;IACtB,WAAW,EAAE,wEAAwE;IACrF,UAAU,EAAE,kBAAkB;IAE9B,KAAK,CAAC,OAAO,CAAC,EAAE,KAAK,EAAE,IAAI,EAAE,OAAO,EAAE,SAAS,EAAsC,EAAE,EAAE,UAAU,EAAe;QAChH,IAAI,CAAC;YACH,UAAU,EAAE,CAAC,EAAE,QAAQ,EAAE,GAAG,EAAE,OAAO,EAAE,mCAAmC,EAAE,CAAC,CAAC;YAE9E,4BAA4B;YAC5B,MAAM,GAAG,GAAG;gBACV,GAAG,OAAO,CAAC,GAAG;gBACd,GAAG,CAAC,KAAK,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC;gBAC9B,GAAG,CAAC,IAAI,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;gBAC3B,GAAG,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,OAAO,EAAE,CAAC;gBACpC,GAAG,CAAC,SAAS,IAAI,EAAE,gBAAgB,EAAE,MAAM,EAAE,CAAC;aAC/C,CAAC;YAEF,UAAU,EAAE,CAAC,EAAE,QAAQ,EAAE,GAAG,EAAE,OAAO,EAAE,mCAAmC,EAAE,CAAC,CAAC;YAE9E,wBAAwB;YACxB,MAAM,MAAM,GAAG,YAAY,CAAC,KAAK,EAAE,CAAC,cAAc,CAAC,EAAE;gBACnD,KAAK,EAAE,KAAK;gBACZ,QAAQ,EAAE,MAAM;gBAChB,SAAS,EAAE,EAAE,GAAG,IAAI,GAAG,IAAI;gBAC3B,OAAO,EAAE,MAAM;gBACf,GAAG;aACJ,CAAC,CAAC;YAEH,UAAU,EAAE,CAAC,EAAE,QAAQ,EAAE,GAAG,EAAE,OAAO,EAAE,8BAA8B,EAAE,CAAC,CAAC;YAEzE,OAAO;gBACL,OAAO,EAAE,CAAC;wBACR,IAAI,EAAE,MAAM;wBACZ,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC;4BACnB,OAAO,EAAE,IAAI;4BACb,IAAI,EAAE,UAAU;4BAChB,MAAM,EAAE,CAAC,UAAU,EAAE,aAAa,EAAE,MAAM,CAAC;4BAC3C,MAAM,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,OAAO,EAAE,SAAS,EAAE;4BAC3C,MAAM,EAAE,MAAM;4BACd,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;yBACpC,EAAE,IAAI,EAAE,CAAC,CAAC;qBACZ,CAAC;aACH,CAAC;QACJ,CAAC;QAAC,OAAO,KAAU,EAAE,CAAC;YACpB,OAAO;gBACL,OAAO,EAAE,CAAC;wBACR,IAAI,EAAE,MAAM;wBACZ,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC;4BACnB,OAAO,EAAE,KAAK;4BACd,IAAI,EAAE,UAAU;4BAChB,KAAK,EAAE,KAAK,CAAC,OAAO;4BACpB,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,QAAQ,EAAE;4BAChC,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;yBACpC,EAAE,IAAI,EAAE,CAAC,CAAC;qBACZ,CAAC;gBACF,OAAO,EAAE,IAAI;aACd,CAAC;QACJ,CAAC;IACH,CAAC;CACF,CAAC","sourcesContent":["/* eslint-disable @typescript-eslint/no-explicit-any -- pre-existing catch(error: any) handlers; outside scope of CWE-78 fix /\nimport { z } from 'zod';\nimport { ToolDefinition, ToolContext } from '../../types/index.js';\nimport { execFileSync } from 'child_process';\n\nconst parallelModeSchema = z.object({\n topic: z.string().optional().describe('Research topic for parallel mode'),\n diff: z.string().optional().describe('Code diff for review'),\n dataset: z.string().optional().describe('Dataset hint for analysis'),\n streaming: z.boolean().optional().default(false).describe('Enable streaming output')\n});\n\nexport const parallelModeTool: ToolDefinition = {\n name: 'agent_parallel',\n description: 'Run parallel mode with 3 agents (research, code review, data analysis)',\n parameters: parallelModeSchema,\n\n async execute({ topic, diff, dataset, streaming }: z.infer<typeof parallelModeSchema>, { onProgress }: ToolContext) {\n try {\n onProgress?.({ progress: 0.1, message: 'Starting parallel agent execution' });\n\n // Set environment variables\n const env = {\n ...process.env,\n ...(topic && { TOPIC: topic }),\n ...(diff && { DIFF: diff }),\n ...(dataset && { DATASET: dataset }),\n ...(streaming && { ENABLE_STREAMING: 'true' })\n };\n\n onProgress?.({ progress: 0.3, message: 'Executing 3 agents in parallel...' });\n\n // Execute parallel mode\n const result = execFileSync('npx', ['agentic-flow'], {\n shell: false,\n encoding: 'utf8',\n maxBuffer: 10 1024 * 1024,\n timeout: 300000,\n env\n });\n\n onProgress?.({ progress: 1.0, message: 'Parallel execution completed' });\n\n return {\n content: [{\n type: 'text',\n text: JSON.stringify({\n success: true,\n mode: 'parallel',\n agents: ['research', 'code_review', 'data'],\n config: { topic, diff, dataset, streaming },\n output: result,\n timestamp: new Date().toISOString()\n }, null, 2)\n }]\n };\n } catch (error: any) {\n return {\n content: [{\n type: 'text',\n text: JSON.stringify({\n success: false,\n mode: 'parallel',\n error: error.message,\n stderr: error.stderr?.toString(),\n timestamp: new Date().toISOString()\n }, null, 2)\n }],\n isError: true\n };\n }\n }\n};\n"]}

package/dist/mcp/fastmcp/tools/hooks/pretrain.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"pretrain.d.ts","sourceRoot":"","sources":["../../../../../src/mcp/fastmcp/tools/hooks/pretrain.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAMH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AAQ3D,eAAO,MAAM,gBAAgB,EAAE,cAkM9B,CAAC"}

package/dist/mcp/fastmcp/tools/hooks/pretrain.js CHANGED Viewed

@@ -5,7 +5,7 @@
 import { z } from 'zod';
 import * as path from 'path';
 import * as fs from 'fs';
-import { execSync } from 'child_process';
+import { execSync, execFileSync } from 'child_process';
 import { loadIntelligence, saveIntelligence, getAgentForFile, simpleEmbed } from './shared.js';
 export const hookPretrainTool = {
     name: 'hook_pretrain',
@@ -17,7 +17,7 @@ export const hookPretrainTool = {
         skipFiles: z.boolean().optional().default(false).describe('Skip file structure analysis'),
         verbose: z.boolean().optional().default(false).describe('Show detailed progress')
     }),
-    execute: async ({ depth, incremental, skipGit, skipFiles, verbose }, { onProgress }) => {
+    execute: async ({ depth, incremental: _incremental, skipGit, skipFiles, verbose }, { onProgress }) => {
         const startTime = Date.now();
         const intel = loadIntelligence();
         const stats = { files: 0, patterns: 0, memories: 0, coedits: 0 };
@@ -26,6 +26,8 @@ export const hookPretrainTool = {
         if (!skipFiles) {
             onProgress?.({ progress: 0.1, message: 'Analyzing file structure...' });
             try {
+                // Static command, no user input — shell is required for the `||` fallback
+                // and `2>/dev/null` redirection. NOT a CWE-78 sink.
                 const filesOutput = execSync('git ls-files 2>/dev/null || find . -type f -not -path "./.git/*" -not -path "./node_modules/*" -not -path "./target/*" 2>/dev/null', { encoding: 'utf-8', maxBuffer: 50 * 1024 * 1024 });
                 const files = filesOutput.trim().split('\n').filter(f => f);
                 for (const file of files) {
@@ -58,7 +60,11 @@ export const hookPretrainTool = {
         if (!skipGit) {
             onProgress?.({ progress: 0.4, message: 'Analyzing git history...' });
             try {
-                const gitLog = execSync(`git log --name-only --pretty=format:"COMMIT:%H" -n ${depth} 2>/dev/null`, { encoding: 'utf-8', maxBuffer: 50 * 1024 * 1024 });
+                // Security (CWE-78): depth is z.number() validated, but use execFileSync
+                // with argv to hard-prevent any future schema relaxation from becoming
+                // an injection sink. Coerce to a positive integer explicitly.
+                const safeDepth = Math.max(1, Math.floor(Number(depth) || 100));
+                const gitLog = execFileSync('git', ['log', '--name-only', '--pretty=format:COMMIT:%H', '-n', String(safeDepth)], { shell: false, encoding: 'utf-8', maxBuffer: 50 * 1024 * 1024, stdio: ['pipe', 'pipe', 'ignore'] });
                 const commits = gitLog.split('COMMIT:').filter(c => c.trim());
                 const coEditMap = {};
                 for (const commit of commits) {
@@ -125,6 +131,8 @@ export const hookPretrainTool = {
         // Phase 4: Build directory-agent mappings
         onProgress?.({ progress: 0.85, message: 'Building directory mappings...' });
         try {
+            // Static command, no user input — shell required for `2>/dev/null || echo`.
+            // NOT a CWE-78 sink.
             const dirs = execSync('find . -type d -maxdepth 2 -not -path "./.git*" -not -path "./node_modules*" 2>/dev/null || echo "."', { encoding: 'utf-8' }).trim().split('\n');
             for (const dir of dirs) {
                 const name = path.basename(dir);