agentic-flow 3.0.0-alpha.1 → 3.0.0

package/dist/agentdb/controllers/EmbeddingService.js

@@ -1,119 +0,0 @@
-/**
- * EmbeddingService - Text Embedding Generation
- *
- * Handles text-to-vector embedding generation using various models.
- * Supports both local (transformers.js) and remote (OpenAI, etc.) embeddings.
- */
-export class EmbeddingService {
-    config;
-    pipeline; // transformers.js pipeline
-    cache;
-    constructor(config) {
-        this.config = config;
-        this.cache = new Map();
-    }
-    /**
-     * Initialize the embedding service
-     */
-    async initialize() {
-        if (this.config.provider === 'transformers') {
-            // Use transformers.js for local embeddings
-            try {
-                const { pipeline } = await import('@xenova/transformers');
-                this.pipeline = await pipeline('feature-extraction', this.config.model);
-            }
-            catch (error) {
-                console.warn('Transformers.js not available, falling back to mock embeddings');
-                this.pipeline = null;
-            }
-        }
-    }
-    /**
-     * Generate embedding for text
-     */
-    async embed(text) {
-        // Check cache
-        const cacheKey = `${this.config.model}:${text}`;
-        if (this.cache.has(cacheKey)) {
-            return this.cache.get(cacheKey);
-        }
-        let embedding;
-        if (this.config.provider === 'transformers' && this.pipeline) {
-            // Use transformers.js
-            const output = await this.pipeline(text, { pooling: 'mean', normalize: true });
-            embedding = new Float32Array(output.data);
-        }
-        else if (this.config.provider === 'openai' && this.config.apiKey) {
-            // Use OpenAI API
-            embedding = await this.embedOpenAI(text);
-        }
-        else {
-            // Mock embedding for testing
-            embedding = this.mockEmbedding(text);
-        }
-        // Cache result
-        if (this.cache.size > 10000) {
-            // Simple LRU: clear half the cache
-            const keysToDelete = Array.from(this.cache.keys()).slice(0, 5000);
-            keysToDelete.forEach(k => this.cache.delete(k));
-        }
-        this.cache.set(cacheKey, embedding);
-        return embedding;
-    }
-    /**
-     * Batch embed multiple texts
-     */
-    async embedBatch(texts) {
-        return Promise.all(texts.map(text => this.embed(text)));
-    }
-    /**
-     * Clear embedding cache
-     */
-    clearCache() {
-        this.cache.clear();
-    }
-    // ========================================================================
-    // Private Methods
-    // ========================================================================
-    async embedOpenAI(text) {
-        const response = await fetch('https://api.openai.com/v1/embeddings', {
-            method: 'POST',
-            headers: {
-                'Authorization': `Bearer ${this.config.apiKey}`,
-                'Content-Type': 'application/json'
-            },
-            body: JSON.stringify({
-                model: this.config.model,
-                input: text
-            })
-        });
-        const data = await response.json();
-        return new Float32Array(data.data[0].embedding);
-    }
-    mockEmbedding(text) {
-        // Simple deterministic mock embedding for testing
-        const embedding = new Float32Array(this.config.dimension);
-        // Use simple hash-based generation
-        let hash = 0;
-        for (let i = 0; i < text.length; i++) {
-            hash = ((hash << 5) - hash) + text.charCodeAt(i);
-            hash = hash & hash; // Convert to 32bit integer
-        }
-        // Fill embedding with pseudo-random values based on hash
-        for (let i = 0; i < this.config.dimension; i++) {
-            const seed = hash + i * 31;
-            embedding[i] = Math.sin(seed) * Math.cos(seed * 0.5);
-        }
-        // Normalize
-        let norm = 0;
-        for (let i = 0; i < embedding.length; i++) {
-            norm += embedding[i] * embedding[i];
-        }
-        norm = Math.sqrt(norm);
-        for (let i = 0; i < embedding.length; i++) {
-            embedding[i] /= norm;
-        }
-        return embedding;
-    }
-}
-//# sourceMappingURL=EmbeddingService.js.map

package/dist/agentdb/controllers/EmbeddingService.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"EmbeddingService.js","sourceRoot":"","sources":["../../../src/agentdb/controllers/EmbeddingService.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AASH,MAAM,OAAO,gBAAgB;IACnB,MAAM,CAAkB;IACxB,QAAQ,CAAM,CAAC,2BAA2B;IAC1C,KAAK,CAA4B;IAEzC,YAAY,MAAuB;QACjC,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;QACrB,IAAI,CAAC,KAAK,GAAG,IAAI,GAAG,EAAE,CAAC;IACzB,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU;QACd,IAAI,IAAI,CAAC,MAAM,CAAC,QAAQ,KAAK,cAAc,EAAE,CAAC;YAC5C,2CAA2C;YAC3C,IAAI,CAAC;gBACH,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,MAAM,CAAC,sBAAsB,CAAC,CAAC;gBAC1D,IAAI,CAAC,QAAQ,GAAG,MAAM,QAAQ,CAAC,oBAAoB,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YAC1E,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,OAAO,CAAC,IAAI,CAAC,gEAAgE,CAAC,CAAC;gBAC/E,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC;YACvB,CAAC;QACH,CAAC;IACH,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,KAAK,CAAC,IAAY;QACtB,cAAc;QACd,MAAM,QAAQ,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,IAAI,IAAI,EAAE,CAAC;QAChD,IAAI,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC7B,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,QAAQ,CAAE,CAAC;QACnC,CAAC;QAED,IAAI,SAAuB,CAAC;QAE5B,IAAI,IAAI,CAAC,MAAM,CAAC,QAAQ,KAAK,cAAc,IAAI,IAAI,CAAC,QAAQ,EAAE,CAAC;YAC7D,sBAAsB;YACtB,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;YAC/E,SAAS,GAAG,IAAI,YAAY,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;QAC5C,CAAC;aAAM,IAAI,IAAI,CAAC,MAAM,CAAC,QAAQ,KAAK,QAAQ,IAAI,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC;YACnE,iBAAiB;YACjB,SAAS,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC;QAC3C,CAAC;aAAM,CAAC;YACN,6BAA6B;YAC7B,SAAS,GAAG,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC;QACvC,CAAC;QAED,eAAe;QACf,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,GAAG,KAAK,EAAE,CAAC;YAC5B,mCAAmC;YACnC,MAAM,YAAY,GAAG,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC;YAClE,YAAY,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;QAClD,CAAC;QACD,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;QAEpC,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;OAEG;IACH,KAAK,CAAC,UAAU,CAAC,KAAe;QAC9B,OAAO,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAC1D,CAAC;IAED;;OAEG;IACH,UAAU;QACR,IAAI,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC;IACrB,CAAC;IAED,2EAA2E;IAC3E,kBAAkB;IAClB,2EAA2E;IAEnE,KAAK,CAAC,WAAW,CAAC,IAAY;QACpC,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,sCAAsC,EAAE;YACnE,MAAM,EAAE,MAAM;YACd,OAAO,EAAE;gBACP,eAAe,EAAE,UAAU,IAAI,CAAC,MAAM,CAAC,MAAM,EAAE;gBAC/C,cAAc,EAAE,kBAAkB;aACnC;YACD,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC;gBACnB,KAAK,EAAE,IAAI,CAAC,MAAM,CAAC,KAAK;gBACxB,KAAK,EAAE,IAAI;aACZ,CAAC;SACH,CAAC,CAAC;QAEH,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;QACnC,OAAO,IAAI,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;IAClD,CAAC;IAEO,aAAa,CAAC,IAAY;QAChC,kDAAkD;QAClD,MAAM,SAAS,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAE1D,mCAAmC;QACnC,IAAI,IAAI,GAAG,CAAC,CAAC;QACb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YACrC,IAAI,GAAG,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC;YACjD,IAAI,GAAG,IAAI,GAAG,IAAI,CAAC,CAAC,2BAA2B;QACjD,CAAC;QAED,yDAAyD;QACzD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;YAC/C,MAAM,IAAI,GAAG,IAAI,GAAG,CAAC,GAAG,EAAE,CAAC;YAC3B,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC,CAAC;QACvD,CAAC;QAED,YAAY;QACZ,IAAI,IAAI,GAAG,CAAC,CAAC;QACb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YAC1C,IAAI,IAAI,SAAS,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC;QACtC,CAAC;QACD,IAAI,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAEvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YAC1C,SAAS,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC;QACvB,CAAC;QAED,OAAO,SAAS,CAAC;IACnB,CAAC;CACF","sourcesContent":["/**\n * EmbeddingService - Text Embedding Generation\n *\n * Handles text-to-vector embedding generation using various models.\n * Supports both local (transformers.js) and remote (OpenAI, etc.) embeddings.\n */\n\nexport interface EmbeddingConfig {\n  model: string;\n  dimension: number;\n  provider: 'transformers' | 'openai' | 'local';\n  apiKey?: string;\n}\n\nexport class EmbeddingService {\n  private config: EmbeddingConfig;\n  private pipeline: any; // transformers.js pipeline\n  private cache: Map<string, Float32Array>;\n\n  constructor(config: EmbeddingConfig) {\n    this.config = config;\n    this.cache = new Map();\n  }\n\n  /**\n   * Initialize the embedding service\n   */\n  async initialize(): Promise<void> {\n    if (this.config.provider === 'transformers') {\n      // Use transformers.js for local embeddings\n      try {\n        const { pipeline } = await import('@xenova/transformers');\n        this.pipeline = await pipeline('feature-extraction', this.config.model);\n      } catch (error) {\n        console.warn('Transformers.js not available, falling back to mock embeddings');\n        this.pipeline = null;\n      }\n    }\n  }\n\n  /**\n   * Generate embedding for text\n   */\n  async embed(text: string): Promise<Float32Array> {\n    // Check cache\n    const cacheKey = `${this.config.model}:${text}`;\n    if (this.cache.has(cacheKey)) {\n      return this.cache.get(cacheKey)!;\n    }\n\n    let embedding: Float32Array;\n\n    if (this.config.provider === 'transformers' && this.pipeline) {\n      // Use transformers.js\n      const output = await this.pipeline(text, { pooling: 'mean', normalize: true });\n      embedding = new Float32Array(output.data);\n    } else if (this.config.provider === 'openai' && this.config.apiKey) {\n      // Use OpenAI API\n      embedding = await this.embedOpenAI(text);\n    } else {\n      // Mock embedding for testing\n      embedding = this.mockEmbedding(text);\n    }\n\n    // Cache result\n    if (this.cache.size > 10000) {\n      // Simple LRU: clear half the cache\n      const keysToDelete = Array.from(this.cache.keys()).slice(0, 5000);\n      keysToDelete.forEach(k => this.cache.delete(k));\n    }\n    this.cache.set(cacheKey, embedding);\n\n    return embedding;\n  }\n\n  /**\n   * Batch embed multiple texts\n   */\n  async embedBatch(texts: string[]): Promise<Float32Array[]> {\n    return Promise.all(texts.map(text => this.embed(text)));\n  }\n\n  /**\n   * Clear embedding cache\n   */\n  clearCache(): void {\n    this.cache.clear();\n  }\n\n  // ========================================================================\n  // Private Methods\n  // ========================================================================\n\n  private async embedOpenAI(text: string): Promise<Float32Array> {\n    const response = await fetch('https://api.openai.com/v1/embeddings', {\n      method: 'POST',\n      headers: {\n        'Authorization': `Bearer ${this.config.apiKey}`,\n        'Content-Type': 'application/json'\n      },\n      body: JSON.stringify({\n        model: this.config.model,\n        input: text\n      })\n    });\n\n    const data = await response.json();\n    return new Float32Array(data.data[0].embedding);\n  }\n\n  private mockEmbedding(text: string): Float32Array {\n    // Simple deterministic mock embedding for testing\n    const embedding = new Float32Array(this.config.dimension);\n\n    // Use simple hash-based generation\n    let hash = 0;\n    for (let i = 0; i < text.length; i++) {\n      hash = ((hash << 5) - hash) + text.charCodeAt(i);\n      hash = hash & hash; // Convert to 32bit integer\n    }\n\n    // Fill embedding with pseudo-random values based on hash\n    for (let i = 0; i < this.config.dimension; i++) {\n      const seed = hash + i * 31;\n      embedding[i] = Math.sin(seed) * Math.cos(seed * 0.5);\n    }\n\n    // Normalize\n    let norm = 0;\n    for (let i = 0; i < embedding.length; i++) {\n      norm += embedding[i] * embedding[i];\n    }\n    norm = Math.sqrt(norm);\n\n    for (let i = 0; i < embedding.length; i++) {\n      embedding[i] /= norm;\n    }\n\n    return embedding;\n  }\n}\n"]}

package/dist/agentdb/controllers/ExplainableRecall.js

@@ -1,387 +0,0 @@
-/**
- * ExplainableRecall - Provenance and Justification for Memory Retrieval
- *
- * Every retrieval returns:
- * - Minimal hitting set of facts that justify the answer
- * - Merkle proof chain for provenance
- * - Policy compliance certificates
- *
- * Based on:
- * - Minimal hitting set algorithms
- * - Merkle tree provenance
- * - Explainable AI techniques
- */
-import * as crypto from 'crypto';
-export class ExplainableRecall {
-    db;
-    constructor(db) {
-        this.db = db;
-    }
-    /**
-     * Create a recall certificate for a retrieval operation
-     */
-    createCertificate(params) {
-        const { queryId, queryText, chunks, requirements, accessLevel = 'internal' } = params;
-        const startTime = Date.now();
-        // 1. Compute minimal hitting set
-        const minimalWhy = this.computeMinimalHittingSet(chunks, requirements);
-        // 2. Calculate metrics
-        const redundancyRatio = chunks.length / minimalWhy.length;
-        const completenessScore = this.calculateCompleteness(minimalWhy, requirements);
-        // 3. Build provenance chain
-        const sourceHashes = chunks.map(chunk => this.getOrCreateProvenance(chunk.type, parseInt(chunk.id)));
-        const merkleTree = this.buildMerkleTree(sourceHashes);
-        const merkleRoot = merkleTree.root;
-        // 4. Generate chunk metadata first (needed for certificate ID)
-        const chunkIds = chunks.map(c => c.id);
-        const chunkTypes = chunks.map(c => c.type);
-        // 5. Create certificate ID
-        const certificateId = this.generateCertificateId(queryId, chunkIds);
-        // 6. Generate proof chain for each chunk
-        const proofChain = chunks.map((chunk, idx) => this.getMerkleProof(merkleTree, idx)).flat();
-        // 7. Store certificate
-        this.db.prepare(`
-      INSERT INTO recall_certificates (
-        id, query_id, query_text, chunk_ids, chunk_types,
-        minimal_why, redundancy_ratio, completeness_score,
-        merkle_root, source_hashes, proof_chain,
-        access_level, latency_ms
-      ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
-    `).run(certificateId, queryId, queryText, JSON.stringify(chunkIds), JSON.stringify(chunkTypes), JSON.stringify(minimalWhy), redundancyRatio, completenessScore, merkleRoot, JSON.stringify(sourceHashes), JSON.stringify(proofChain), accessLevel, Date.now() - startTime);
-        // 7. Store justification paths
-        this.storeJustificationPaths(certificateId, chunks, minimalWhy, requirements);
-        const certificate = {
-            id: certificateId,
-            queryId,
-            queryText,
-            chunkIds,
-            chunkTypes,
-            minimalWhy,
-            redundancyRatio,
-            completenessScore,
-            merkleRoot,
-            sourceHashes,
-            proofChain,
-            accessLevel: accessLevel,
-            latencyMs: Date.now() - startTime
-        };
-        return certificate;
-    }
-    /**
-     * Verify a recall certificate
-     */
-    verifyCertificate(certificateId) {
-        const cert = this.db.prepare('SELECT * FROM recall_certificates WHERE id = ?').get(certificateId);
-        if (!cert) {
-            return { valid: false, issues: ['Certificate not found'] };
-        }
-        const issues = [];
-        // 1. Verify Merkle root
-        const sourceHashes = JSON.parse(cert.source_hashes);
-        const merkleTree = this.buildMerkleTree(sourceHashes);
-        if (merkleTree.root !== cert.merkle_root) {
-            issues.push('Merkle root mismatch');
-        }
-        // 2. Verify chunk hashes still match
-        const chunkIds = JSON.parse(cert.chunk_ids);
-        const chunkTypes = JSON.parse(cert.chunk_types);
-        for (let i = 0; i < chunkIds.length; i++) {
-            const currentHash = this.getContentHash(chunkTypes[i], parseInt(chunkIds[i]));
-            if (currentHash !== sourceHashes[i]) {
-                issues.push(`Chunk ${chunkIds[i]} hash changed`);
-            }
-        }
-        // 3. Verify completeness
-        const minimalWhy = JSON.parse(cert.minimal_why);
-        if (minimalWhy.length === 0) {
-            issues.push('Empty justification set');
-        }
-        // 4. Verify redundancy ratio
-        if (cert.redundancy_ratio < 1.0) {
-            issues.push('Invalid redundancy ratio');
-        }
-        return {
-            valid: issues.length === 0,
-            issues
-        };
-    }
-    /**
-     * Get justification for why a chunk was included
-     */
-    getJustification(certificateId, chunkId) {
-        const row = this.db.prepare(`
-      SELECT * FROM justification_paths
-      WHERE certificate_id = ? AND chunk_id = ?
-    `).get(certificateId, chunkId);
-        if (!row)
-            return null;
-        return {
-            chunkId: row.chunk_id,
-            chunkType: row.chunk_type,
-            reason: row.reason,
-            necessityScore: row.necessity_score,
-            pathElements: JSON.parse(row.path_elements)
-        };
-    }
-    /**
-     * Get provenance lineage for a source
-     */
-    getProvenanceLineage(contentHash) {
-        const lineage = [];
-        let currentHash = contentHash;
-        while (currentHash) {
-            const source = this.db.prepare(`
-        SELECT * FROM provenance_sources WHERE content_hash = ?
-      `).get(currentHash);
-            if (!source)
-                break;
-            lineage.push({
-                id: source.id,
-                sourceType: source.source_type,
-                sourceId: source.source_id,
-                contentHash: source.content_hash,
-                parentHash: source.parent_hash,
-                derivedFrom: source.derived_from ? JSON.parse(source.derived_from) : undefined,
-                creator: source.creator,
-                metadata: source.metadata ? JSON.parse(source.metadata) : undefined
-            });
-            currentHash = source.parent_hash;
-        }
-        return lineage;
-    }
-    /**
-     * Audit certificate access
-     */
-    auditCertificate(certificateId) {
-        const certRow = this.db.prepare('SELECT * FROM recall_certificates WHERE id = ?').get(certificateId);
-        if (!certRow) {
-            throw new Error(`Certificate ${certificateId} not found`);
-        }
-        const certificate = {
-            id: certRow.id,
-            queryId: certRow.query_id,
-            queryText: certRow.query_text,
-            chunkIds: JSON.parse(certRow.chunk_ids),
-            chunkTypes: JSON.parse(certRow.chunk_types),
-            minimalWhy: JSON.parse(certRow.minimal_why),
-            redundancyRatio: certRow.redundancy_ratio,
-            completenessScore: certRow.completeness_score,
-            merkleRoot: certRow.merkle_root,
-            sourceHashes: JSON.parse(certRow.source_hashes),
-            proofChain: JSON.parse(certRow.proof_chain),
-            policyProof: certRow.policy_proof,
-            policyVersion: certRow.policy_version,
-            accessLevel: certRow.access_level,
-            latencyMs: certRow.latency_ms
-        };
-        // Get justifications
-        const justRows = this.db.prepare(`
-      SELECT * FROM justification_paths WHERE certificate_id = ?
-    `).all(certificateId);
-        const justifications = justRows.map(row => ({
-            chunkId: row.chunk_id,
-            chunkType: row.chunk_type,
-            reason: row.reason,
-            necessityScore: row.necessity_score,
-            pathElements: JSON.parse(row.path_elements)
-        }));
-        // Get provenance for each source
-        const provenance = new Map();
-        for (const hash of certificate.sourceHashes) {
-            provenance.set(hash, this.getProvenanceLineage(hash));
-        }
-        // Calculate quality metrics
-        const avgNecessity = justifications.reduce((sum, j) => sum + j.necessityScore, 0) / justifications.length;
-        return {
-            certificate,
-            justifications,
-            provenance,
-            quality: {
-                completeness: certificate.completenessScore,
-                redundancy: certificate.redundancyRatio,
-                avgNecessity
-            }
-        };
-    }
-    // ========================================================================
-    // Private Helper Methods
-    // ========================================================================
-    /**
-     * Compute minimal hitting set using greedy algorithm
-     * A hitting set contains at least one element from each requirement
-     */
-    computeMinimalHittingSet(chunks, requirements) {
-        if (requirements.length === 0) {
-            return chunks.slice(0, Math.min(3, chunks.length)).map(c => c.id);
-        }
-        const uncovered = new Set(requirements);
-        const selected = [];
-        // Greedy: select chunk that covers most uncovered requirements
-        while (uncovered.size > 0 && chunks.length > 0) {
-            let bestChunk = null;
-            let bestCoverage = 0;
-            for (const chunk of chunks) {
-                const coverage = Array.from(uncovered).filter(req => chunk.content.toLowerCase().includes(req.toLowerCase())).length;
-                if (coverage > bestCoverage) {
-                    bestCoverage = coverage;
-                    bestChunk = chunk;
-                }
-            }
-            if (!bestChunk)
-                break;
-            selected.push(bestChunk.id);
-            // Remove covered requirements
-            for (const req of Array.from(uncovered)) {
-                if (bestChunk.content.toLowerCase().includes(req.toLowerCase())) {
-                    uncovered.delete(req);
-                }
-            }
-            // Remove selected chunk
-            chunks = chunks.filter(c => c.id !== bestChunk.id);
-        }
-        return selected;
-    }
-    /**
-     * Calculate completeness score
-     */
-    calculateCompleteness(minimalWhy, requirements) {
-        if (requirements.length === 0)
-            return 1.0;
-        const chunks = minimalWhy.map(id => {
-            // Get chunk content
-            const episode = this.db.prepare('SELECT output FROM episodes WHERE id = ?').get(parseInt(id));
-            return episode ? episode.output : '';
-        });
-        const satisfied = requirements.filter(req => chunks.some(content => content && content.toLowerCase().includes(req.toLowerCase())));
-        return satisfied.length / requirements.length;
-    }
-    /**
-     * Get or create provenance record
-     */
-    getOrCreateProvenance(sourceType, sourceId) {
-        // Check if provenance exists
-        const existing = this.db.prepare(`
-      SELECT content_hash FROM provenance_sources
-      WHERE source_type = ? AND source_id = ?
-    `).get(sourceType, sourceId);
-        if (existing) {
-            return existing.content_hash;
-        }
-        // Create new provenance
-        const contentHash = this.getContentHash(sourceType, sourceId);
-        this.db.prepare(`
-      INSERT INTO provenance_sources (source_type, source_id, content_hash, creator)
-      VALUES (?, ?, ?, ?)
-    `).run(sourceType, sourceId, contentHash, 'system');
-        return contentHash;
-    }
-    /**
-     * Get content hash for a memory
-     */
-    getContentHash(sourceType, sourceId) {
-        let content = '';
-        switch (sourceType) {
-            case 'episode':
-                const episode = this.db.prepare('SELECT task, output FROM episodes WHERE id = ?').get(sourceId);
-                content = episode ? `${episode.task}:${episode.output}` : '';
-                break;
-            case 'skill':
-                const skill = this.db.prepare('SELECT name, code FROM skills WHERE id = ?').get(sourceId);
-                content = skill ? `${skill.name}:${skill.code}` : '';
-                break;
-            case 'note':
-                const note = this.db.prepare('SELECT text FROM notes WHERE id = ?').get(sourceId);
-                content = note ? note.text : '';
-                break;
-            case 'fact':
-                const fact = this.db.prepare('SELECT subject, predicate, object FROM facts WHERE id = ?').get(sourceId);
-                content = fact ? `${fact.subject}:${fact.predicate}:${fact.object}` : '';
-                break;
-        }
-        return crypto.createHash('sha256').update(content).digest('hex');
-    }
-    /**
-     * Build Merkle tree from hashes
-     */
-    buildMerkleTree(hashes) {
-        if (hashes.length === 0) {
-            return { root: '', tree: [[]] };
-        }
-        const tree = [hashes];
-        while (tree[tree.length - 1].length > 1) {
-            const level = tree[tree.length - 1];
-            const nextLevel = [];
-            for (let i = 0; i < level.length; i += 2) {
-                if (i + 1 < level.length) {
-                    const combined = level[i] + level[i + 1];
-                    nextLevel.push(crypto.createHash('sha256').update(combined).digest('hex'));
-                }
-                else {
-                    nextLevel.push(level[i]);
-                }
-            }
-            tree.push(nextLevel);
-        }
-        return { root: tree[tree.length - 1][0], tree };
-    }
-    /**
-     * Get Merkle proof for a leaf
-     */
-    getMerkleProof(merkleTree, leafIndex) {
-        const proof = [];
-        let index = leafIndex;
-        for (let level = 0; level < merkleTree.tree.length - 1; level++) {
-            const currentLevel = merkleTree.tree[level];
-            const isLeftNode = index % 2 === 0;
-            const siblingIndex = isLeftNode ? index + 1 : index - 1;
-            if (siblingIndex < currentLevel.length) {
-                proof.push({
-                    hash: currentLevel[siblingIndex],
-                    position: isLeftNode ? 'right' : 'left'
-                });
-            }
-            index = Math.floor(index / 2);
-        }
-        return proof;
-    }
-    /**
-     * Generate certificate ID
-     */
-    generateCertificateId(queryId, chunkIds) {
-        const data = `${queryId}:${chunkIds.join(',')}:${Date.now()}`;
-        return crypto.createHash('sha256').update(data).digest('hex');
-    }
-    /**
-     * Store justification paths
-     */
-    storeJustificationPaths(certificateId, chunks, minimalWhy, requirements) {
-        const stmt = this.db.prepare(`
-      INSERT INTO justification_paths (
-        certificate_id, chunk_id, chunk_type, reason, necessity_score, path_elements
-      ) VALUES (?, ?, ?, ?, ?, ?)
-    `);
-        for (const chunk of chunks) {
-            const isNecessary = minimalWhy.includes(chunk.id);
-            const reason = this.determineReason(chunk, requirements);
-            const necessityScore = isNecessary ? chunk.relevance : chunk.relevance * 0.5;
-            const pathElements = [
-                `Retrieved for query`,
-                isNecessary ? `Essential for justification` : `Supporting evidence`,
-                `Relevance: ${(chunk.relevance * 100).toFixed(1)}%`
-            ];
-            stmt.run(certificateId, chunk.id, chunk.type, reason, necessityScore, JSON.stringify(pathElements));
-        }
-    }
-    /**
-     * Determine reason for inclusion
-     */
-    determineReason(chunk, requirements) {
-        if (chunk.relevance > 0.9)
-            return 'semantic_match';
-        if (chunk.relevance > 0.7)
-            return 'causal_link';
-        if (chunk.relevance > 0.5)
-            return 'prerequisite';
-        return 'constraint';
-    }
-}