agentera 3.0.0-dev.2 → 3.0.0-dev.21

package/dist/state/gitBackfillOutput.js

@@ -0,0 +1,209 @@
+import fs from "node:fs";
+import path from "node:path";
+import { canonicalRecordJson, discoverNumberedArchives, numberedArchiveContract, } from "./archiveDiscovery.js";
+import { gitBackfillContractProjection } from "./gitBackfillAuthority.js";
+import { serializeNumberedArchive } from "./archivePublication.js";
+export function sortedGroups(scan, args) {
+    const groups = [...scan.groups.values()].filter((group) => (!args.artifact || group.artifactId === args.artifact) &&
+        (args.number === undefined || group.entryNumber === args.number));
+    for (const target of scan.targets.values()) {
+        if ((!args.artifact || target.artifactId === args.artifact) &&
+            (args.number === undefined || target.entryNumber === args.number) &&
+            !scan.groups.has(target.entryId)) {
+            groups.push({
+                artifactId: target.artifactId,
+                entryNumber: target.entryNumber,
+                entryId: target.entryId,
+                versions: new Map(),
+            });
+        }
+    }
+    groups.sort((a, b) => a.artifactId.localeCompare(b.artifactId) || a.entryNumber - b.entryNumber);
+    return groups;
+}
+export function occurrences(group) {
+    return [...group.versions.values()]
+        .flat()
+        .sort((a, b) => a.commit.localeCompare(b.commit) || a.path.localeCompare(b.path) || a.blobId.localeCompare(b.blobId));
+}
+export function groupReason(scan, group) {
+    if (!scan.gitRoot)
+        return "git_unavailable";
+    if (scan.headStatus === "changed")
+        return "changed_head";
+    if (scan.headStatus === "unavailable") {
+        return scan.gitReason === "missing_commit" ? "missing_history" : "git_unavailable";
+    }
+    const reachableHashes = new Set(group.versions.keys());
+    if ((scan.rewritten.get(group.entryId) ?? []).some((value) => !reachableHashes.has(value.contentHash))) {
+        return "history_rewritten";
+    }
+    if (scan.invalid.has(group.entryId))
+        return "corrupt_history";
+    if (scan.bounded)
+        return "scan_bounded";
+    if (scan.shallow)
+        return "shallow_history";
+    if (group.versions.size > 1)
+        return "conflicting_versions";
+    if (group.versions.size === 1)
+        return "none";
+    if (scan.rewritten.has(group.entryId))
+        return "history_rewritten";
+    return "missing_history";
+}
+export function provenanceFor(values) {
+    return values.map((value) => ({
+        commit: value.commit,
+        path: value.path,
+        blob_id: value.blobId,
+        entry_id: value.entryId,
+        content_hash: value.contentHash,
+        reachable: value.reachable,
+    }));
+}
+function existingArchiveState(projectRoot, sourceRoot, group) {
+    const contract = numberedArchiveContract(group.artifactId, sourceRoot);
+    const archivePath = path.join(projectRoot, contract.archiveRoot, group.artifactId, `${group.entryNumber}${contract.archiveExtension}`);
+    const discovery = discoverNumberedArchives(projectRoot, {
+        sourceRoot,
+        artifactId: group.artifactId,
+    });
+    const existing = discovery.entries.find((entry) => entry.path === archivePath);
+    if (existing && group.versions.size === 1) {
+        const record = [...group.versions.values()][0]?.[0]?.record;
+        if (record && canonicalRecordJson(existing.record) === canonicalRecordJson(record))
+            return "same";
+    }
+    if (fs.existsSync(archivePath))
+        return "conflict";
+    return "none";
+}
+function occurrenceFor(scan, group, args) {
+    const values = [
+        ...occurrences(group),
+        ...(scan.rewritten.get(group.entryId) ?? []),
+    ];
+    if (!args.commit && !args.path)
+        return values[0];
+    return values.find((value) => value.reachable &&
+        (!args.commit || value.commit === args.commit) &&
+        (!args.path || value.path === args.path));
+}
+export function buildEntryOutput(scan, group, args, includeBytes) {
+    const pinRequested = Boolean(args.commit || args.path);
+    const selected = occurrenceFor(scan, group, args);
+    const reason = pinRequested && !selected ? "no_matching_pin" : groupReason(scan, group);
+    const values = occurrences(group);
+    const rewritten = scan.rewritten.get(group.entryId) ?? [];
+    const invalid = scan.invalid.get(group.entryId) ?? [];
+    const eligible = reason === "none" && group.versions.size === 1 && selected?.reachable === true;
+    const source = selected ?? invalid[0];
+    const output = {
+        entry_id: group.entryId,
+        artifact_id: group.artifactId,
+        entry_number: group.entryNumber,
+        commit: source?.commit ?? null,
+        path: source?.path ?? null,
+        blob_id: source?.blobId ?? null,
+        content_hash: source?.contentHash ?? null,
+        ambiguity_reason: reason,
+        eligible,
+        reachable: source?.reachable ?? false,
+        provenance: provenanceFor([...values, ...rewritten, ...invalid]),
+        operation: eligible ? "candidate" : "refused",
+        ...(reason === "no_matching_pin" ? { refusal: "no reachable occurrence matches the requested --commit/--path pin" } : {}),
+    };
+    if (includeBytes && eligible && selected) {
+        const serialized = serializeNumberedArchive(group.artifactId, group.entryNumber, selected.record, scan.sourceRoot);
+        output.proposed_archive_bytes = serialized.bytes;
+        output.record_sha256 = serialized.recordSha256;
+    }
+    return output;
+}
+export function archiveState(projectRoot, sourceRoot, group) {
+    return existingArchiveState(projectRoot, sourceRoot, group);
+}
+export function selectedOccurrence(scan, group, args) {
+    return occurrenceFor(scan, group, args);
+}
+export function buildResponse(scan, mode, entries, diagnostics, status, omittedCount = 0) {
+    const uniqueCandidates = entries.filter((entry) => entry.ambiguity_reason === "none").length;
+    const conflicting = entries.filter((entry) => entry.ambiguity_reason === "conflicting_versions").length;
+    const missing = entries.filter((entry) => ["missing_history", "history_rewritten", "corrupt_history"].includes(entry.ambiguity_reason)).length;
+    const occurrencesCount = entries.reduce((count, entry) => count + Math.max(entry.provenance.length, entry.commit ? 1 : 0), 0);
+    const applied = entries.filter((entry) => entry.operation === "applied").length;
+    const replayed = entries.filter((entry) => entry.operation === "replayed" || entry.operation === "already_archived").length;
+    const refused = entries.filter((entry) => entry.operation === "refused").length;
+    return {
+        command: scan.contract.command,
+        mode,
+        status,
+        project: scan.projectRoot,
+        read_only: mode !== "apply",
+        remote_contact: false,
+        head: {
+            before: scan.beforeHead ?? null,
+            after: scan.afterHead ?? null,
+            status: scan.headStatus,
+        },
+        scan: {
+            reachable_refs: scan.refs,
+            shallow: scan.shallow,
+            bounded: scan.bounded,
+            commits_limit: scan.contract.maximumCommits,
+            commits_used: scan.historyWork,
+            history_bytes_limit: scan.contract.maximumHistoryBytes,
+            history_bytes_used: scan.historyBytes,
+            bounded_reasons: scan.boundedReasons,
+        },
+        counts: {
+            targets: scan.targets.size,
+            occurrences: occurrencesCount,
+            unique_candidates: uniqueCandidates,
+            conflicting,
+            missing,
+            previewed: mode === "preview" ? entries.filter((entry) => entry.proposed_archive_bytes !== undefined).length : 0,
+            applied,
+            replayed,
+            refused,
+        },
+        active_projections_unchanged: true,
+        active_projection_hashes: scan.projectionHashes,
+        omitted: omittedCount > 0,
+        omitted_count: omittedCount,
+        omission_reason: omittedCount > 0 ? "result_limit" : "none",
+        continuation: {
+            available: false,
+            guidance: omittedCount > 0
+                ? "No cursor is issued; use --artifact ARTIFACT --number N to retrieve an omitted entry because --limit is capped at 100."
+                : "No continuation is required.",
+        },
+        entries,
+        diagnostics,
+        source_contract: {
+            ...gitBackfillContractProjection(scan.contract),
+            syntax: scan.contract.command,
+            read_only: mode !== "apply",
+            remote_contact: false,
+            archive_record_forbids: scan.contract.archiveRecordForbids,
+        },
+    };
+}
+export function renderGitBackfillText(response, out) {
+    out(`status=${response.status} | mode=${response.mode} | project=${response.project} | head=${response.head.status}\n`);
+    out(`counts=targets:${response.counts.targets} occurrences:${response.counts.occurrences} ` +
+        `unique:${response.counts.unique_candidates} conflicting:${response.counts.conflicting} ` +
+        `missing:${response.counts.missing} applied:${response.counts.applied} refused:${response.counts.refused}\n`);
+    for (const entry of response.entries) {
+        out(`- ${entry.entry_id} | ${entry.operation ?? "candidate"} | ` +
+            `reason=${entry.ambiguity_reason} | commit=${entry.commit ?? "-"} | path=${entry.path ?? "-"}\n`);
+    }
+    if (response.omitted) {
+        out(`omitted=${response.omitted_count} | reason=${response.omission_reason}\n`);
+        out(`continuation=${response.continuation.guidance}\n`);
+    }
+    for (const diagnostic of response.diagnostics)
+        out(`diagnostic=${diagnostic}\n`);
+}
+//# sourceMappingURL=gitBackfillOutput.js.map

package/dist/state/gitBackfillOutput.js.map

@@ -0,0 +1 @@
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package/dist/state/healthRepair.js

@@ -0,0 +1,70 @@
+import YAML from "yaml";
+function healthIdentityNumber(value) {
+    if (value && typeof value === "object" && !Array.isArray(value)) {
+        const mapping = value;
+        const number = mapping.number;
+        if (Number.isSafeInteger(number) && Number(number) > 0)
+            return Number(number);
+        return healthIdentityNumber(mapping.summary);
+    }
+    if (typeof value !== "string")
+        return null;
+    const match = /^Audit\s+([1-9][0-9]*)\b/.exec(value.trim());
+    return match ? Number(match[1]) : null;
+}
+export function repairHealthDuplicates(doc, number, keep) {
+    const candidate = structuredClone(doc);
+    let removed = 0;
+    for (const key of ["audits", "archive"]) {
+        const values = Array.isArray(candidate[key]) ? candidate[key] : [];
+        const matches = values.flatMap((value, index) => (healthIdentityNumber(value) === number ? [index] : []));
+        if (matches.length < 2)
+            continue;
+        const retained = keep === "last" ? matches.at(-1) : matches[0];
+        candidate[key] = values.filter((_, index) => !matches.includes(index) || index === retained);
+        removed += matches.length - 1;
+    }
+    return { candidate, removed };
+}
+export function repairHealthProjectionBytes(bytes, number, keep) {
+    const document = YAML.parseDocument(bytes);
+    const removals = [];
+    let removed = 0;
+    for (const key of ["audits", "archive"]) {
+        const sequence = document.get(key, true);
+        const items = sequence?.items ?? [];
+        const sequenceEnd = sequence?.range?.[1];
+        const matches = items.flatMap((item, index) => {
+            const value = typeof item?.toJSON === "function"
+                ? item.toJSON()
+                : item;
+            return healthIdentityNumber(value) === number ? [index] : [];
+        });
+        if (matches.length < 2)
+            continue;
+        const retained = keep === "last" ? matches.at(-1) : matches[0];
+        for (const index of matches) {
+            if (index === retained)
+                continue;
+            const range = items[index]?.range;
+            if (!range || range.length < 2)
+                throw new Error(`health ${key} row ${index} has no stable YAML range`);
+            const lineStart = bytes.lastIndexOf("\n", range[0] - 1) + 1;
+            const nextRange = items[index + 1]?.range;
+            const rawEnd = nextRange?.[0] ?? sequenceEnd ?? bytes.length;
+            const lineEnd = nextRange
+                ? bytes.lastIndexOf("\n", rawEnd - 1) + 1
+                : (() => {
+                    const newline = bytes.indexOf("\n", Math.max(range[1], rawEnd));
+                    return newline < 0 ? bytes.length : newline + 1;
+                })();
+            removals.push([lineStart, Math.max(lineStart, lineEnd)]);
+            removed += 1;
+        }
+    }
+    for (const [start, end] of removals.sort((left, right) => right[0] - left[0])) {
+        bytes = bytes.slice(0, start) + bytes.slice(end);
+    }
+    return { bytes, removed };
+}
+//# sourceMappingURL=healthRepair.js.map

package/dist/state/healthRepair.js.map

@@ -0,0 +1 @@
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package/dist/state/installRoot.js

@@ -1,6 +1,7 @@
 import fs from "node:fs";
 import path from "node:path";
 import { expanduser, isFile, pathExists, resolvePath } from "../core/paths.js";
+import { loadTomlFile } from "../core/toml.js";
 /**
  * Read-only Agentera install-root classification. Faithful TypeScript port of
  * `scripts/install_root.py`. Owns install-root identity and diagnostics without
@@ -75,18 +76,12 @@ export function resolveCandidate(explicitRoot, opts) {
 }
 export function defaultAppHome(env, home, platform = process.platform) {
     if (platform === "darwin") {
-        return path.join(expanduser(home), "Library", "Application Support", "agentera");
+        return macosDefaultAppHome(home);
     }
     if (platform === "win32") {
-        const appdata = env.APPDATA;
-        const base = appdata
-            ? expanduser(appdata)
-            : path.join(expanduser(home), "AppData", "Roaming");
-        return path.join(base, "agentera");
+        return windowsDefaultAppHome(env, home);
     }
-    const xdg = env.XDG_DATA_HOME;
-    const base = xdg ? expanduser(xdg) : path.join(expanduser(home), ".local", "share");
-    return path.join(base, "agentera");
+    return linuxDefaultAppHome(env, home);
 }
 function linuxDefaultAppHome(env, home) {
     const xdg = env.XDG_DATA_HOME;
@@ -148,11 +143,17 @@ function managedFresh(root, source, setupMissing, bundleMissing, expected, curre
         },
     }, { expectedVersion: expected, currentVersion: current });
 }
+function managedStaleDiagnosticMessage(reason) {
+    if (reason === "version_mismatch") {
+        return "Agentera app files are valid but need an update to the expected version";
+    }
+    return "Agentera app files need repair";
+}
 function managedStale(root, source, expected, current, missingEvidence, reason, evidence) {
     return classification(root, source, "managed_stale", "preview_refresh", "managed", "stale", missingEvidence, {
         code: "install_root.managed_stale",
         severity: "warning",
-        message: "Agentera app files need repair",
+        message: managedStaleDiagnosticMessage(reason),
         evidence: { path: root, source: sourceLabel(source), reason, ...evidence },
     }, { expectedVersion: expected, currentVersion: current });
 }
@@ -162,30 +163,37 @@ function missingEntries(root, entries) {
 function readBundleMarker(root) {
     const marker = path.join(root, BUNDLE_MARKER);
     if (!isFile(marker)) {
-        return null;
+        return { kind: "absent" };
     }
     try {
         const data = JSON.parse(fs.readFileSync(marker, "utf8"));
-        return data && typeof data === "object" && !Array.isArray(data)
-            ? data
-            : null;
+        if (data && typeof data === "object" && !Array.isArray(data)) {
+            return { kind: "valid", data: data };
+        }
+        return { kind: "corrupt" };
     }
     catch {
-        return null;
+        return { kind: "corrupt" };
     }
 }
-function missingScriptCommands(script, commands) {
-    if (!isFile(script)) {
-        return [...commands];
+const SEMVER_PREFIX = /^\d+\.\d+\.\d+/;
+function readPyprojectVersion(root) {
+    const pyprojectPath = path.join(root, "pyproject.toml");
+    if (!isFile(pyprojectPath)) {
+        return null;
     }
-    let text;
     try {
-        text = fs.readFileSync(script, "utf8");
+        const data = loadTomlFile(pyprojectPath);
+        const project = data.project;
+        if (project && typeof project === "object" && !Array.isArray(project)) {
+            const version = project.version;
+            return typeof version === "string" && version ? version : null;
+        }
     }
     catch {
-        return [...commands];
+        // fall through
     }
-    return commands.filter((command) => !text.includes(command));
+    return null;
 }
 export function classifyResolvedRoot(rootInput, opts) {
     const root = resolvePath(rootInput);
@@ -221,12 +229,28 @@ export function classifyResolvedRoot(rootInput, opts) {
     const hasSetupEvidence = setupMissing.length === 0;
     const hasBundleEvidence = bundleMissing.length === 0;
     const presentEvidence = MANAGED_EVIDENCE.filter((entry) => pathExists(path.join(root, entry)));
-    const marker = readBundleMarker(root);
-    const current = marker?.version ?? null;
+    const markerRead = readBundleMarker(root);
+    const marker = markerRead.kind === "valid" ? markerRead.data : null;
+    let current = marker?.version ?? null;
+    // Fall back to pyproject.toml when the marker version is not a valid semver
+    // (e.g. stale "v1" or placeholder "current" from v2-era installs).
+    if (current !== null && !SEMVER_PREFIX.test(current)) {
+        const pyprojectVersion = readPyprojectVersion(root);
+        if (pyprojectVersion !== null) {
+            current = pyprojectVersion;
+        }
+    }
     if (hasSetupEvidence && !pathExists(path.join(root, BUNDLE_MARKER))) {
         return managedFresh(root, source, setupMissing, bundleMissing, expected, current);
     }
     if (hasBundleEvidence) {
+        if (markerRead.kind === "corrupt") {
+            return managedStale(root, source, expected, current, ["a valid bundle marker file"], "corrupt_marker", {
+                expectedVersion: expected,
+                currentVersion: current,
+                markerPath: path.join(root, BUNDLE_MARKER),
+            });
+        }
         if (expected !== null && current !== expected) {
             return managedStale(root, source, expected, current, ["current bundle marker/version or required CLI command evidence"], "version_mismatch", {
                 expectedVersion: expected,
@@ -276,4 +300,20 @@ export function classifyInstallRoot(explicitRoot, opts) {
 export function formatDiagnostic(c) {
     return `${c.diagnostic.severity}: ${c.diagnostic.message} (${c.path})`;
 }
+/** Resolved app-home path for agent/bootstrap callers (port of install_root.py). */
+export function formatResolvedAppHome(explicitRoot, opts = {}) {
+    const env = opts.env ?? process.env;
+    const home = opts.home ?? expanduser("~");
+    const platform = opts.platform ?? process.platform;
+    const [resolvedPath, source] = resolveCandidate(explicitRoot ?? null, { env, home, platform });
+    if ((opts.format ?? "text") === "json") {
+        return JSON.stringify({
+            path: resolvedPath,
+            source,
+            sourceLabel: sourceLabel(source),
+            platform,
+        });
+    }
+    return resolvedPath;
+}
 //# sourceMappingURL=installRoot.js.map

package/dist/state/installRoot.js.map

@@ -1 +1 @@
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package/dist/state/legacyIdentity.js

@@ -0,0 +1,48 @@
+function positiveNumber(value) {
+    if (typeof value === "number" && Number.isSafeInteger(value) && value > 0)
+        return value;
+    if (typeof value === "string" && /^[1-9][0-9]*$/.test(value)) {
+        const parsed = Number(value);
+        return Number.isSafeInteger(parsed) && parsed > 0 ? parsed : null;
+    }
+    return null;
+}
+function mapping(value) {
+    return value !== null && typeof value === "object" && !Array.isArray(value)
+        ? value
+        : null;
+}
+/**
+ * A shorthand is an identity only when it is the leading token of a decision
+ * summary. References later in the prose are evidence, not identity.
+ */
+const LEADING_DECISION_SHORTHAND = /^D([1-9][0-9]*)(?=$|[\s:([,.;])/;
+const LEADING_DECISION_COMPOUND = /^D[1-9][0-9]*\s*\+\s*D[1-9][0-9]*/;
+export function legacyIdentity(value, artifactId, entryNumberField) {
+    const object = mapping(value);
+    if (object) {
+        const explicit = positiveNumber(object[entryNumberField]);
+        if (explicit !== null)
+            return { number: explicit, kind: "canonical_number" };
+        if (typeof object.summary === "string")
+            return legacyIdentity(object.summary, artifactId, entryNumberField);
+        return { number: null, kind: "unaddressable" };
+    }
+    if (typeof value !== "string")
+        return { number: null, kind: "unaddressable" };
+    const text = value.trim();
+    if (artifactId === "decisions") {
+        if (LEADING_DECISION_COMPOUND.test(text))
+            return { number: null, kind: "ambiguous" };
+        const shorthand = LEADING_DECISION_SHORTHAND.exec(text);
+        if (shorthand)
+            return { number: positiveNumber(shorthand[1]), kind: "explicit_decision_shorthand" };
+    }
+    const label = artifactId === "progress" ? "Cycle" : artifactId === "decisions" ? "Decision" : "Audit";
+    const match = new RegExp(`^${label}\\s+([1-9][0-9]*)\\b`).exec(text);
+    return match ? { number: positiveNumber(match[1]), kind: "canonical_number" } : { number: null, kind: "unaddressable" };
+}
+export function legacyEntryNumber(value, artifactId, entryNumberField) {
+    return legacyIdentity(value, artifactId, entryNumberField).number;
+}
+//# sourceMappingURL=legacyIdentity.js.map

package/dist/state/legacyIdentity.js.map

@@ -0,0 +1 @@
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