agentera 3.0.0-dev.14 → 3.0.0-dev.16

package/dist/cli/dispatch/lifecycle.js

@@ -298,6 +298,8 @@ export function runUpgrade(argv, io, prog) {
         force: false,
         verify: false,
         restore: false,
+        runtime: null,
+        legacyCleanup: null,
         format: "text",
     };
     let jsonFlag = false;
@@ -322,7 +324,50 @@ export function runUpgrade(argv, io, prog) {
             return rejectUnsupportedUpgradeFlag(io, args.format ?? "text", "--target-major was removed; use --channel with dry-run preview then --yes");
         }
         else if ((v = value("--runtime")) !== null) {
-            return rejectUnsupportedUpgradeFlag(io, args.format ?? "text", "--runtime is not yet supported by the TypeScript upgrade command; use --only runtime for migration phases");
+            if (v === "cursor-agent") {
+                return emitInvalidInput(io, {
+                    format: asEnvelopeFormat(args.format),
+                    body: {
+                        class: "invalid_choice",
+                        message: "argument --runtime: cursor-agent is a Cursor CLI surface, not an active runtime; use --runtime cursor",
+                        valid_values: ["all", "opencode", "codex", "cursor", "copilot"],
+                    },
+                });
+            }
+            if (v === "claude") {
+                return emitInvalidInput(io, {
+                    format: asEnvelopeFormat(args.format),
+                    body: {
+                        class: "invalid_choice",
+                        message: "argument --runtime: claude is retired; use --legacy-cleanup claude for explicit legacy-only cleanup",
+                        valid_values: ["all", "opencode", "codex", "cursor", "copilot"],
+                    },
+                });
+            }
+            if (!["all", "opencode", "codex", "cursor", "copilot"].includes(v)) {
+                return emitInvalidInput(io, {
+                    format: asEnvelopeFormat(args.format),
+                    body: {
+                        class: "invalid_choice",
+                        message: `argument --runtime: invalid choice: '${v}' (choose from 'all', 'opencode', 'codex', 'cursor', 'copilot')`,
+                        valid_values: ["all", "opencode", "codex", "cursor", "copilot"],
+                    },
+                });
+            }
+            args.runtime = v;
+        }
+        else if ((v = value("--legacy-cleanup")) !== null) {
+            if (v !== "claude") {
+                return emitInvalidInput(io, {
+                    format: asEnvelopeFormat(args.format),
+                    body: {
+                        class: "invalid_choice",
+                        message: `argument --legacy-cleanup: invalid choice: '${v}' (choose from 'claude')`,
+                        valid_values: ["claude"],
+                    },
+                });
+            }
+            args.legacyCleanup = "claude";
         }
         else if ((v = value("--only")) !== null) {
             if (v !== "artifacts" && v !== "runtime" && v !== "cleanup") {
@@ -461,9 +506,11 @@ export function runReport(argv, io, prog) {
         action: null,
         format: "text",
         project: null,
+        sources: "active",
         dryRun: false,
         consent: null,
         projectRoot: [],
+        importSources: [],
     };
     const positionals = [];
     let i = 0;
@@ -477,6 +524,15 @@ export function runReport(argv, io, prog) {
             args.format = v;
         else if ((v = value("--project")) !== null)
             args.project = v;
+        else if ((v = value("--sources")) !== null) {
+            if (v !== "active" && v !== "all") {
+                return emitInvalidInput(io, {
+                    format: asEnvelopeFormat(args.format),
+                    body: { class: "invalid_choice", message: `argument --sources: invalid choice: '${v}' (choose from 'active', 'all')`, valid_values: ["active", "all"] },
+                });
+            }
+            args.sources = v;
+        }
         else if ((v = value("--consent")) !== null) {
             if (v !== "local-history") {
                 return emitInvalidInput(io, {
@@ -498,6 +554,20 @@ export function runReport(argv, io, prog) {
             args.codexSessionsDir = v;
         else if ((v = value("--claude-projects-dir")) !== null)
             args.claudeProjectsDir = v;
+        else if ((v = value("--import-source")) !== null) {
+            if (v !== "claude") {
+                return emitInvalidInput(io, {
+                    format: asEnvelopeFormat(args.format),
+                    body: {
+                        class: "invalid_choice",
+                        message: `argument --import-source: invalid choice: '${v}' (choose from 'claude')`,
+                        valid_values: ["claude"],
+                    },
+                });
+            }
+            if (!args.importSources.includes(v))
+                args.importSources.push(v);
+        }
         else if ((v = value("--opencode-conversations-dir")) !== null)
             args.opencodeConversationsDir = v;
         else if ((v = value("--copilot-conversations-dir")) !== null)
@@ -508,8 +578,6 @@ export function runReport(argv, io, prog) {
             args.cursorChatsDir = v;
         else if (a === "--no-codex")
             args.noCodex = true;
-        else if (a === "--no-claude")
-            args.noClaude = true;
         else if (a === "--no-opencode")
             args.noOpencode = true;
         else if (a === "--no-copilot")

package/dist/cli/dispatch/lifecycle.js.map

@@ -1 +1 @@
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package/dist/cli/dispatch/state.js

@@ -4,6 +4,7 @@ import { cmdQuery } from "../commands/query.js";
 import { makeArgvValueReader } from "./argvParser.js";
 import { asEnvelopeFormat, classifyParseError } from "./shared.js";
 import { emitInvalidInput } from "../errors.js";
+import { runStateWrite } from "../commands/state/write.js";
 export function parseStateArgs(command, argv) {
     const args = {
         command,
@@ -54,6 +55,9 @@ export function parseStateArgs(command, argv) {
     return args;
 }
 export function runState(command, argv, io, prog) {
+    if (argv[0] && !argv[0].startsWith("--")) {
+        return runStateWrite(command, argv, io);
+    }
     const parsed = parseStateArgs(command, argv);
     if ("error" in parsed) {
         return emitInvalidInput(io, {

package/dist/cli/dispatch/state.js.map

@@ -1 +1 @@
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package/dist/cli/errors.js

@@ -21,6 +21,7 @@ export function emitInvalidInput(io, opts) {
     const err = io.err ?? ((t) => process.stderr.write(t));
     if (opts.format === "json") {
         const envelope = {
+            schemaVersion: "agentera.invalidInputEnvelope.v2",
             status: "fail",
             error: opts.body,
         };

package/dist/cli/errors.js.map

@@ -1 +1 @@
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package/dist/cli/help.js

@@ -1,4 +1,5 @@
 import { CAPABILITY_ROUTING_NAMES } from "./commands/capability.js";
+import { verbsForArtifact } from "../state/write/operations.js";
 const TOP_LEVEL = [
     "prime",
     "schema",
@@ -18,12 +19,12 @@ export function printTopLevelHelp() {
     return [
         `usage: agentera [-h] [--version] {${choices}} ...`,
         "",
-        "agentera: read project state, upgrade installs, and print priming guidance",
+        "agentera: read and write project state, upgrade installs, and print priming guidance",
         "",
         ...lines("Agent commands:", [
             "prime               Composite orientation briefing, capability startup context, or static guidance",
             "schema              Runtime CLI/schema introspection",
-            "state               Routine artifact reads and advanced artifact query",
+            "state               Routine artifact reads, writes, and advanced artifact query",
             ...CAPABILITY_ROUTING_NAMES.map((name) => `${name.padEnd(19)} Route to ${name} capability guidance`),
         ]),
         ...lines("User commands:", [
@@ -47,6 +48,8 @@ export function printUpgradeHelp() {
     return [
         "usage: agentera upgrade [-h] [--project PROJECT] [--install-root INSTALL_ROOT]",
         "                        [--home HOME] [--channel {stable,development}]",
+        "                        [--runtime {all,opencode,codex,cursor,copilot}]",
+        "                        [--legacy-cleanup {claude}]",
         "                        [--only {artifacts,runtime,cleanup}] [--dry-run] [--yes]",
         "                        [--force] [--verify] [--restore] [--format {text,json}]",
         "",
@@ -56,9 +59,12 @@ export function printUpgradeHelp() {
         "  --install-root PATH   Agentera app home to wire into runtime configs",
         "  --home HOME           Home directory for runtime config writes/detection",
         "  --channel CHANNEL     Update channel: stable (2.x) or development (3.x npm)",
+        "  --runtime RUNTIME     Preview/apply Agentera-owned lifecycle work for all or one active runtime",
+        "  --legacy-cleanup ID   Explicitly include legacy-only retired Claude cleanup",
         "  --only PHASE          Upgrade phase to include; may be repeated",
-        "  --dry-run             Plan only and write nothing",
-        "  --yes                 Apply pending local upgrade actions",
+        "  --dry-run             Strict read-only preview; no files, locks, caches, native commands, or telemetry",
+        "  --yes                 Explicitly approve declared Agentera-owned operations; never native/trust actions",
+        "                        Corrupt/disconnected ownership journals and malformed locks fail closed",
         "  --force               Overwrite managed runtime files or conflicting backups",
         "  --verify              Post-apply verify: doctor status + 12 prime capability schema checks",
         "  --restore             Reverse remove-managed-app-home from the latest upgrade snapshot",
@@ -94,12 +100,23 @@ export function printDoctorHelp() {
         "  --smoke                 Run bounded offline smoke checks (no live model calls by default)",
         "  --allow-live-model      Record permission for future live model smoke probes",
         "  --format {text,json}    Structured output format",
+        "",
+        "Reports detailed read-only lifecycle evidence and manual native steps for OpenCode, Codex, Cursor, and Copilot.",
     ].join("\n");
 }
 export function printStateHelp(sub) {
     if (sub) {
+        const verbs = verbsForArtifact(sub);
         return [
             `usage: agentera state ${sub} [-h] [--format {text,json,yaml}] [filters]`,
+            ...(verbs.length ? [`       agentera state ${sub} {${verbs.join(",")}} [write flags]`] : []),
+            ...(verbs.length
+                ? [
+                    "",
+                    `Discover writes: agentera state ${sub} explain --format json`,
+                    `Per verb:        agentera state ${sub} explain --verb VERB --format json`,
+                ]
+                : []),
             "",
             "options:",
             "  -h, --help            show this help message and exit",
@@ -109,7 +126,8 @@ export function printStateHelp(sub) {
     return [
         "usage: agentera state [-h] {plan,progress,health,todo,decisions,docs,objective,experiments,query} ...",
         "",
-        "Routine artifact reads and advanced artifact query.",
+        "Routine artifact reads, writes, and advanced artifact query.",
+        "Discover typed writes: agentera state <artifact> explain --format json",
     ].join("\n");
 }
 export function printCheckHelp(sub) {
@@ -132,21 +150,26 @@ export function printCheckHelp(sub) {
 }
 export function printReportHelp() {
     return [
-        "usage: agentera report [-h] [--format {text,json}] [--project VALUE]",
+        "usage: agentera report [-h] [--format {text,json}] [--project VALUE] [--sources {active,all}]",
         "                       | agentera report refresh [--dry-run|--consent local-history]",
+        "                         [--import-source claude]",
         "                         [--no-<runtime> ...] [--accept-coverage-gap]",
         "",
         "Privacy-gated usage analytics over an existing corpus.",
+        "Default analytics use --sources active and exclude historical imports.",
+        "Use --sources all to include historical records with visible provenance.",
         "",
         "Corpus extraction flags (report refresh with --consent local-history):",
         "  These flags deselect runtimes that would otherwise be included when their",
         "  store exists. Full-mode profile runs a Coverage Audit first; skipping an",
         "  available runtime flags the run until --accept-coverage-gap is passed.",
         "  --no-codex            Skip codex even if ~/.codex/sessions exists",
-        "  --no-claude           Skip claude-code even if ~/.claude/projects exists",
         "  --no-opencode         Skip opencode even if the opencode.db store exists",
         "  --no-copilot          Skip github-copilot even if session-store.db exists",
-        "  --no-cursor           Skip cursor and cursor-agent stores",
+        "  --no-cursor           Skip Cursor IDE and CLI stores",
+        "  --import-source claude Explicitly import local Claude history as historical data.",
+        "                         Transcripts can contain secrets, file contents, and command output.",
+        "                         Import is read-only, active_runtime=false, and excluded by default analytics.",
         "  --accept-coverage-gap Proceed despite skipped available runtimes (EX2)",
         "  --coverage-audit-only Run the Coverage Audit summary only; do not extract",
     ].join("\n");
@@ -166,6 +189,8 @@ export function printPrimeHelp() {
         "  --dashboard           Emit the prime orientation dashboard",
         "  --orientation         Emit orientation briefing sections",
         "  --fields FIELDS       Comma-separated field filter for JSON/YAML output",
+        "",
+        "JSON output includes a bounded four-runtime lifecycle summary; source_contract includes artifact_writes discovery metadata.",
     ].join("\n");
 }
 export function printSchemaHelp() {
@@ -173,6 +198,7 @@ export function printSchemaHelp() {
         "usage: agentera schema [-h] [--format {json,yaml}]",
         "",
         "Runtime CLI and schema introspection.",
+        "Includes the state_writer operation matrix and per-artifact write_interface metadata.",
         "",
         "options:",
         "  -h, --help            show this help message and exit",

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package/dist/cli/prime-blob.js

@@ -1,3 +1,69 @@
-// AUTO-PORTED from scripts/agentera PRIME_BLOB. Byte-exact.
-export const PRIME_BLOB = "# agentera priming guide\n\n## Routing: agentera vs native tools\n\nUse top-level `agentera <state>` commands for routine questions about project state.\nUse native tools (read, grep, glob, edit, bash) for source code operations.\n\nagentera queries return compact answers from structured state. Do NOT read\nraw YAML artifacts directly. The CLI is the seam between agent and state.\n\nSupported state commands:\n  agentera prime                                # Composite orientation briefing\n  agentera prime --guidance                     # Print this guide\n  agentera state decisions [--topic TOPIC]      # Decision log\n  agentera state health [--dimension DIM]       # Latest health audit\n  agentera state todo [--severity LEVEL]        # TODO summary\n  agentera state plan                           # Active plan + task status\n  agentera state progress [--limit N]           # Recent cycle summary\n  agentera state docs                           # Docs mappings + stale docs\n  agentera state objective                      # Active optimize objective\n  agentera state experiments                    # Active optimize experiments\n  agentera check lint --artifact PROGRESS.md --file .agentera/progress.yaml  # Pre-write artifact prose self-audit\n  agentera state query --list-artifacts         # Discover advanced schema names\n  agentera state query <artifact-name>          # Advanced custom artifact query\n\nWhen to use agentera:\n  - \"What did we decide about X?\"       \u2192 agentera state decisions --topic X\n  - \"How's the codebase health?\"        \u2192 agentera state health\n  - \"What's the coupling grade?\"        \u2192 agentera state health --dimension coupling_health\n  - \"Any critical open issues?\"         \u2192 agentera state todo --severity critical\n\nWhen to use native tools:\n  - Reading or editing source code      \u2192 native read/edit/grep\n  - Searching files                     \u2192 native glob/grep\n  - Running commands                    \u2192 native bash\n  - Browsing the web                    \u2192 native fetch\n\n## Recovery: stale or missing artifacts\n\nIf `agentera <state>` returns empty:\n  1. The artifact may not exist yet (no data has been written to it).\n  2. Run without filters to see all available data.\n  3. If data is stale, the producing capability needs to run again.\n\nIf artifacts are corrupted:\n  1. Check the YAML file in .agentera/ directly.\n  2. Run `agentera schema --format json` and use `source.schemas_dir`.\n  3. Re-run the producing capability to regenerate the artifact.\n\nIf schemas are missing:\n  1. Run `agentera schema --format json`.\n  2. Make sure Agentera's app files exist at the reported `managedAppRoot` path.\n  3. Run `agentera doctor` for a plain-language repair preview.\n";
+export const PRIME_BLOB = [
+    "# agentera priming guide",
+    "",
+    "## Routing: agentera vs native tools",
+    "",
+    "Use top-level `agentera <state>` commands for routine questions about project state.",
+    "Use native tools (read, grep, glob, edit, bash) for source code operations.",
+    "",
+    "Agentera queries return compact answers from structured state. Do NOT read",
+    "raw YAML artifacts directly. The CLI is the seam between agent and state.",
+    "",
+    "For supported artifact mutations, use the typed state writer instead of native",
+    "file edits. Discover the live fields and examples before constructing a write:",
+    "  agentera state <artifact> explain --format json",
+    "  agentera state <artifact> explain --verb <verb> --format json",
+    "",
+    "Supported state commands:",
+    "  agentera prime                                # Composite orientation briefing",
+    "  agentera prime --guidance                     # Print this guide",
+    "  agentera state decisions [--topic TOPIC]      # Decision log",
+    "  agentera state health [--dimension DIM]       # Latest health audit",
+    "  agentera state todo [--severity LEVEL]        # TODO summary",
+    "  agentera state plan                           # Active plan + task status",
+    "  agentera state progress [--limit N]           # Recent cycle summary",
+    "  agentera state docs                           # Docs mappings + stale docs",
+    "  agentera state objective                      # Active optimize objective",
+    "  agentera state experiments                    # Active optimize experiments",
+    "  agentera check lint --artifact PROGRESS.md --file .agentera/progress.yaml  # Pre-write artifact prose self-audit",
+    "  agentera state query --list-artifacts         # Discover advanced schema names",
+    "  agentera state query <artifact-name>          # Advanced custom artifact query",
+    "",
+    "Supported typed writes:",
+    "  agentera state progress append ...            # Record verified cycle evidence",
+    "  agentera state decisions append|update ...    # Record decisions or satisfaction",
+    "  agentera state plan append|update|set-status|archive|create ...",
+    "  agentera state health append --input PATH     # Record one complete audit",
+    "  Add --dry-run to preview any mutation without publishing it.",
+    "",
+    "When to use agentera:",
+    '  - "What did we decide about X?"       → agentera state decisions --topic X',
+    '  - "How\'s the codebase health?"        → agentera state health',
+    '  - "What\'s the coupling grade?"        → agentera state health --dimension coupling_health',
+    '  - "Any critical open issues?"         → agentera state todo --severity critical',
+    "  - Recording supported artifact state   → agentera state <artifact> explain",
+    "",
+    "When to use native tools:",
+    "  - Reading or editing source code      → native read/edit/grep",
+    "  - Searching files                     → native glob/grep",
+    "  - Running commands                    → native bash",
+    "  - Browsing the web                    → native fetch",
+    "",
+    "## Recovery: stale or missing artifacts",
+    "",
+    "If `agentera <state>` returns empty:",
+    "  1. The artifact may not exist yet (no data has been written to it).",
+    "  2. Run without filters to see all available data.",
+    "  3. If data is stale, the producing capability needs to run again.",
+    "",
+    "If artifacts are corrupted:",
+    "  1. Check the YAML file in .agentera/ directly.",
+    "  2. Run `agentera schema --format json` and use `source.schemas_dir`.",
+    "  3. Re-run the producing capability to regenerate the artifact.",
+    "",
+    "If schemas are missing:",
+    "  1. Run `agentera schema --format json`.",
+    "  2. Make sure Agentera's app files exist at the reported `managedAppRoot` path.",
+    "  3. Run `agentera doctor` for a plain-language repair preview.",
+].join("\n") + "\n";
 //# sourceMappingURL=prime-blob.js.map

package/dist/cli/prime-blob.js.map

@@ -1 +1 @@
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+{"version":3,"file":"prime-blob.js","sourceRoot":"","sources":["../../src/cli/prime-blob.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,UAAU,GACrB;IACE,0BAA0B;IAC1B,EAAE;IACF,sCAAsC;IACtC,EAAE;IACF,sFAAsF;IACtF,6EAA6E;IAC7E,EAAE;IACF,4EAA4E;IAC5E,2EAA2E;IAC3E,EAAE;IACF,gFAAgF;IAChF,gFAAgF;IAChF,mDAAmD;IACnD,iEAAiE;IACjE,EAAE;IACF,2BAA2B;IAC3B,kFAAkF;IAClF,oEAAoE;IACpE,gEAAgE;IAChE,uEAAuE;IACvE,gEAAgE;IAChE,6EAA6E;IAC7E,wEAAwE;IACxE,8EAA8E;IAC9E,6EAA6E;IAC7E,+EAA+E;IAC/E,oHAAoH;IACpH,kFAAkF;IAClF,kFAAkF;IAClF,EAAE;IACF,yBAAyB;IACzB,kFAAkF;IAClF,oFAAoF;IACpF,mEAAmE;IACnE,6EAA6E;IAC7E,gEAAgE;IAChE,EAAE;IACF,uBAAuB;IACvB,8EAA8E;IAC9E,kEAAkE;IAClE,8FAA8F;IAC9F,mFAAmF;IACnF,8EAA8E;IAC9E,EAAE;IACF,2BAA2B;IAC3B,iEAAiE;IACjE,4DAA4D;IAC5D,uDAAuD;IACvD,wDAAwD;IACxD,EAAE;IACF,yCAAyC;IACzC,EAAE;IACF,sCAAsC;IACtC,uEAAuE;IACvE,qDAAqD;IACrD,qEAAqE;IACrE,EAAE;IACF,6BAA6B;IAC7B,kDAAkD;IAClD,wEAAwE;IACxE,kEAAkE;IAClE,EAAE;IACF,yBAAyB;IACzB,2CAA2C;IAC3C,kFAAkF;IAClF,iEAAiE;CAClE,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC"}

package/dist/cli/startupCompletenessContract.js

@@ -21,7 +21,7 @@ export const STARTUP_AVAILABLE_STATE_FIELDS = [
     "execution_context",
 ];
 export const STARTUP_COMPLETENESS_CONFIDENCE_CAVEATS = [
-    "representative benchmark evidence exists, but claude-code and github-copilot coverage is degraded by schema divergence",
+    "representative benchmark evidence exists, but some source products remain degraded by schema divergence",
     "Audit evidence context uses existing status, plan, progress, docs, health, TODO, and decisions state outputs",
 ];
 export const STARTUP_COMPLETENESS_CLI_FALLBACK = [

package/dist/cli/startupCompletenessContract.js.map

@@ -1 +1 @@
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package/dist/core/atomicWriter.js

@@ -0,0 +1,21 @@
+import fs from "node:fs";
+export function writeFileAtomic(target, data, encoding = "utf8") {
+    const tmp = `${target}.tmp.${process.pid}.${Date.now()}`;
+    try {
+        if (Buffer.isBuffer(data))
+            fs.writeFileSync(tmp, data);
+        else
+            fs.writeFileSync(tmp, data, encoding);
+        fs.renameSync(tmp, target);
+    }
+    catch (err) {
+        try {
+            fs.unlinkSync(tmp);
+        }
+        catch {
+            // The stage may not exist or may already have been published.
+        }
+        throw err;
+    }
+}
+//# sourceMappingURL=atomicWriter.js.map

package/dist/core/atomicWriter.js.map

@@ -0,0 +1 @@
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package/dist/core/yaml.js

@@ -22,4 +22,12 @@ export function loadYamlMappingFile(path) {
 export function parseYaml(text) {
     return YAML.parse(text);
 }
+/** Serialize a YAML mapping with stable block-style prose and insertion-order keys. */
+export function dumpYamlMapping(doc) {
+    return YAML.stringify(doc, {
+        blockQuote: "literal",
+        collectionStyle: "block",
+        lineWidth: 0,
+    });
+}
 //# sourceMappingURL=yaml.js.map

package/dist/core/yaml.js.map

@@ -1 +1 @@
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