agentdb 3.0.0-alpha.8 → 3.0.0

package/dist/src/controllers/WASMVectorSearch.js

@@ -11,7 +11,10 @@
  * - Graceful fallback to JavaScript
  * - SIMD optimizations when available
  */
-import { cosineSimilarity as sharedCosineSimilarity } from '../utils/vector-math.js';
+import { fileURLToPath } from 'url';
+import { dirname, join, resolve } from 'path';
+import { existsSync } from 'fs';
+import { validateFilterColumns, validateSqlIdentifier } from '../security/input-validation.js';
 export class WASMVectorSearch {
     db;
     config;
@@ -19,7 +22,7 @@ export class WASMVectorSearch {
     wasmAvailable = false;
     simdAvailable = false;
     vectorIndex = null;
-    attentionService = null;
+    wasmInitPromise = null;
     constructor(db, config) {
         this.db = db;
         this.config = {
@@ -27,47 +30,138 @@ export class WASMVectorSearch {
             enableSIMD: true,
             batchSize: 100,
             indexThreshold: 1000,
-            useAttention: true,
             ...config,
         };
-        this.initializeWASM();
+        this.wasmInitPromise = this.initializeWASM();
         this.detectSIMD();
     }
     /**
-     * Set the AttentionService for attention-enhanced search (ADR-064).
+     * Wait for WASM initialization to complete
      */
-    setAttentionService(svc) {
-        this.attentionService = svc;
+    async waitForInit() {
+        if (this.wasmInitPromise) {
+            await this.wasmInitPromise;
+        }
+        return this.wasmAvailable;
     }
     /**
-     * Initialize WASM module
+     * Get the directory of the current module
      */
-    async initializeWASM() {
-        if (!this.config.enableWASM)
-            return;
+    getCurrentModuleDir() {
+        try {
+            // ESM context - use import.meta.url if available
+            if (typeof import.meta !== 'undefined' && import.meta.url) {
+                return dirname(fileURLToPath(import.meta.url));
+            }
+        }
+        catch {
+            // Fallback for CJS context
+        }
+        // CommonJS context or fallback
+        if (typeof __dirname !== 'undefined') {
+            return __dirname;
+        }
+        // Last resort: use process.cwd()
+        return process.cwd();
+    }
+    /**
+     * Build list of potential WASM module paths
+     */
+    getWASMSearchPaths() {
+        const currentDir = this.getCurrentModuleDir();
+        const moduleName = 'reasoningbank_wasm.js';
+        // Build a comprehensive list of potential paths
+        const searchPaths = [];
+        // 1. Environment variable override (highest priority)
+        if (process.env.AGENTDB_WASM_PATH) {
+            searchPaths.push(join(process.env.AGENTDB_WASM_PATH, moduleName));
+        }
+        // 2. Relative to current file (src/controllers -> wasm paths)
+        // From src/controllers/WASMVectorSearch.ts up to project roots
+        searchPaths.push(
+        // Direct path in agentic-flow package
+        resolve(currentDir, '..', '..', '..', 'agentic-flow', 'wasm', 'reasoningbank', moduleName), 
+        // From packages/agentdb to workspace root
+        resolve(currentDir, '..', '..', '..', '..', 'agentic-flow', 'wasm', 'reasoningbank', moduleName), 
+        // Monorepo structure: packages/agentdb -> packages/agentic-flow
+        resolve(currentDir, '..', '..', '..', 'agentic-flow', 'wasm', 'reasoningbank', moduleName));
+        // 3. From dist directory (compiled output)
+        searchPaths.push(resolve(currentDir, '..', '..', '..', '..', 'agentic-flow', 'wasm', 'reasoningbank', moduleName));
+        // 4. Relative to process.cwd() (package root)
+        searchPaths.push(resolve(process.cwd(), 'wasm', 'reasoningbank', moduleName), resolve(process.cwd(), 'node_modules', '@ruvector', 'wasm', moduleName), resolve(process.cwd(), '..', 'agentic-flow', 'wasm', 'reasoningbank', moduleName));
+        // 5. Workspace-level paths (for monorepo setups)
+        searchPaths.push('/workspaces/agentic-flow/agentic-flow/wasm/reasoningbank/' + moduleName, '/workspaces/agentic-flow/packages/agentic-flow/wasm/reasoningbank/' + moduleName);
+        // 6. Check for installed npm package
         try {
-            // Try to load ReasoningBank WASM module
-            // Note: This requires the ReasoningBank WASM module to be built and available
-            // If not available, the system gracefully falls back to optimized JavaScript
-            const wasmPath = '../../../agentic-flow/wasm/reasoningbank/reasoningbank_wasm.js';
-            const { ReasoningBankWasm } = await import(wasmPath);
-            // Test WASM functionality
-            const testInstance = new ReasoningBankWasm();
-            await testInstance.free();
-            this.wasmModule = ReasoningBankWasm;
-            this.wasmAvailable = true;
-            console.log('[WASMVectorSearch] ReasoningBank WASM acceleration enabled');
+            const npmPath = require.resolve('@ruvector/wasm/reasoningbank_wasm.js');
+            if (npmPath) {
+                searchPaths.unshift(npmPath); // Prioritize npm package
+            }
         }
-        catch (error) {
-            // Graceful fallback - the JavaScript implementation is still highly optimized
-            // with loop unrolling and batch processing
+        catch {
+            // @ruvector/wasm not installed as npm package
+        }
+        return searchPaths;
+    }
+    /**
+     * Initialize WASM module with robust path resolution
+     */
+    async initializeWASM() {
+        if (!this.config.enableWASM) {
             this.wasmAvailable = false;
-            // Only show detailed error in development
-            if (process.env.NODE_ENV === 'development') {
-                console.debug('[WASMVectorSearch] ReasoningBank WASM not available, using optimized JavaScript fallback');
-                console.debug('[WASMVectorSearch] Error:', error.message);
+            return;
+        }
+        const searchPaths = this.getWASMSearchPaths();
+        const triedPaths = [];
+        for (const wasmPath of searchPaths) {
+            // Normalize and check if file exists
+            const normalizedPath = resolve(wasmPath);
+            // Skip if we've already tried this path (dedup)
+            if (triedPaths.includes(normalizedPath)) {
+                continue;
+            }
+            triedPaths.push(normalizedPath);
+            // Check if the file exists before attempting import
+            if (!existsSync(normalizedPath)) {
+                continue;
+            }
+            try {
+                // Attempt dynamic import
+                const wasmModule = await import(normalizedPath);
+                const ReasoningBankWasm = wasmModule.ReasoningBankWasm || wasmModule.default?.ReasoningBankWasm;
+                if (!ReasoningBankWasm) {
+                    console.error(`[WASMVectorSearch] Module found at ${normalizedPath} but ReasoningBankWasm not exported`);
+                    continue;
+                }
+                // Test WASM functionality
+                const testInstance = new ReasoningBankWasm();
+                if (typeof testInstance.free === 'function') {
+                    await testInstance.free();
+                }
+                this.wasmModule = ReasoningBankWasm;
+                this.wasmAvailable = true;
+                if (process.env.NODE_ENV !== 'production') {
+                    console.error(`[WASMVectorSearch] ReasoningBank WASM acceleration enabled (loaded from: ${normalizedPath})`);
+                }
+                return;
+            }
+            catch (error) {
+                // Log in development mode for debugging
+                if (process.env.NODE_ENV === 'development') {
+                    console.error(`[WASMVectorSearch] Failed to load from ${normalizedPath}: ${error.message}`);
+                }
+                continue;
             }
         }
+        // All paths exhausted - fallback to JavaScript implementation
+        this.wasmAvailable = false;
+        if (process.env.NODE_ENV === 'development') {
+            console.error('[WASMVectorSearch] ReasoningBank WASM not available, using optimized JavaScript fallback');
+            console.error(`[WASMVectorSearch] Searched ${triedPaths.length} paths:`, triedPaths.slice(0, 5).join(', '));
+        }
+        else {
+            console.error('[WASMVectorSearch] Using optimized JavaScript fallback (WASM not available)');
+        }
     }
     /**
      * Detect SIMD support
@@ -85,7 +179,7 @@ export class WASMVectorSearch {
                     0, 97, 115, 109, 1, 0, 0, 0, 1, 5, 1, 96, 0, 1, 123, 3, 2, 1, 0, 10, 10, 1, 8, 0, 65, 0, 253, 15, 253, 98, 11
                 ]));
             if (this.simdAvailable) {
-                console.log('[WASMVectorSearch] SIMD support detected');
+                console.error('[WASMVectorSearch] SIMD support detected');
             }
         }
         catch {
@@ -94,10 +188,32 @@ export class WASMVectorSearch {
     }
     /**
      * Calculate cosine similarity between two vectors (optimized)
-     * Delegates to shared vector-math utility with 4x loop unrolling.
      */
     cosineSimilarity(a, b) {
-        return sharedCosineSimilarity(a, b);
+        if (a.length !== b.length) {
+            throw new Error('Vectors must have same length');
+        }
+        // Standard calculation with loop unrolling
+        let dotProduct = 0;
+        let normA = 0;
+        let normB = 0;
+        // Unroll loop for better performance
+        const len = a.length;
+        const remainder = len % 4;
+        const loopEnd = len - remainder;
+        for (let i = 0; i < loopEnd; i += 4) {
+            dotProduct += a[i] * b[i] + a[i + 1] * b[i + 1] + a[i + 2] * b[i + 2] + a[i + 3] * b[i + 3];
+            normA += a[i] * a[i] + a[i + 1] * a[i + 1] + a[i + 2] * a[i + 2] + a[i + 3] * a[i + 3];
+            normB += b[i] * b[i] + b[i + 1] * b[i + 1] + b[i + 2] * b[i + 2] + b[i + 3] * b[i + 3];
+        }
+        // Handle remainder
+        for (let i = loopEnd; i < len; i++) {
+            dotProduct += a[i] * b[i];
+            normA += a[i] * a[i];
+            normB += b[i] * b[i];
+        }
+        const denom = Math.sqrt(normA) * Math.sqrt(normB);
+        return denom === 0 ? 0 : dotProduct / denom;
     }
     /**
      * Batch calculate similarities between query and multiple vectors
@@ -122,10 +238,15 @@ export class WASMVectorSearch {
         // Build WHERE clause for filters
         const conditions = [];
         const params = [];
+        // tableName and filter keys are interpolated into SQL: identifiers only,
+        // and keys must be real columns of the table
+        const table = validateSqlIdentifier(tableName);
         if (options?.filters) {
-            Object.entries(options.filters).forEach(([key, value]) => {
-                conditions.push(`${key} = ?`);
-                params.push(value);
+            const entries = Object.entries(options.filters);
+            const columns = validateFilterColumns(this.db, table, entries.map(([key]) => key));
+            columns.forEach((column, i) => {
+                conditions.push(`${column} = ?`);
+                params.push(entries[i][1]);
             });
         }
         const whereClause = conditions.length > 0
@@ -134,7 +255,7 @@ export class WASMVectorSearch {
         // Retrieve all vectors
         const stmt = this.db.prepare(`
       SELECT pattern_id as id, embedding
-      FROM ${tableName}
+      FROM ${table}
       ${whereClause}
     `);
         const rows = stmt.all(...params);
@@ -161,10 +282,10 @@ export class WASMVectorSearch {
      */
     buildIndex(vectors, ids, metadata) {
         if (vectors.length < this.config.indexThreshold) {
-            console.log(`[WASMVectorSearch] Dataset too small (${vectors.length} < ${this.config.indexThreshold}), skipping index`);
+            console.error(`[WASMVectorSearch] Dataset too small (${vectors.length} < ${this.config.indexThreshold}), skipping index`);
             return;
         }
-        console.log(`[WASMVectorSearch] Building ANN index for ${vectors.length} vectors...`);
+        console.error(`[WASMVectorSearch] Building ANN index for ${vectors.length} vectors...`);
         this.vectorIndex = {
             vectors,
             ids,
@@ -172,7 +293,7 @@ export class WASMVectorSearch {
             built: true,
             lastUpdate: Date.now(),
         };
-        console.log(`[WASMVectorSearch] ANN index built successfully`);
+        console.error(`[WASMVectorSearch] ANN index built successfully`);
     }
     /**
      * Search using ANN index (if available)
@@ -198,68 +319,6 @@ export class WASMVectorSearch {
         results.sort((a, b) => b.similarity - a.similarity);
         return results.slice(0, k);
     }
-    /**
-     * Attention-enhanced search (ADR-064 Phase 1).
-     * Combines cosine similarity with Flash Attention scores for improved relevance.
-     *
-     * @param query      - Query vector
-     * @param vectors    - Corpus of vectors with IDs and optional metadata
-     * @param topK       - Number of results to return
-     * @param useAttention - Override config to enable/disable attention scoring
-     */
-    async searchWithAttention(query, vectors, topK = 10, useAttention) {
-        const doAttention = useAttention ?? this.config.useAttention ?? true;
-        if (!doAttention || !this.attentionService) {
-            return this.searchBasic(query, vectors, topK);
-        }
-        // Compute cosine similarities
-        const queryArr = new Float32Array(query);
-        const cosineSims = vectors.map(v => ({
-            id: v.id,
-            cosine: this.cosineSimilarity(queryArr, new Float32Array(v.vector)),
-            metadata: v.metadata,
-        }));
-        // Apply Flash Attention for relevance boost
-        let attentionScores;
-        try {
-            const keys = vectors.map(v => v.vector);
-            const values = vectors.map(v => v.vector);
-            attentionScores = await this.attentionService.applyFlashAttention(query, keys, values, { headCount: 8 });
-        }
-        catch {
-            // If attention fails, fall back to pure cosine
-            return cosineSims
-                .sort((a, b) => b.cosine - a.cosine)
-                .slice(0, topK)
-                .map(r => ({ id: r.id, score: r.cosine, metadata: r.metadata }));
-        }
-        // Combine cosine similarity (70%) + attention weight (30%)
-        const results = cosineSims.map((r, i) => {
-            const attWeight = i < attentionScores.length ? Math.abs(attentionScores[i]) : 0;
-            return {
-                id: r.id,
-                score: r.cosine * 0.7 + attWeight * 0.3,
-                metadata: r.metadata,
-            };
-        });
-        return results
-            .sort((a, b) => b.score - a.score)
-            .slice(0, topK);
-    }
-    /**
-     * Basic cosine-only search (no attention).
-     */
-    searchBasic(query, vectors, topK) {
-        const queryArr = new Float32Array(query);
-        const results = vectors.map(v => ({
-            id: v.id,
-            score: this.cosineSimilarity(queryArr, new Float32Array(v.vector)),
-            metadata: v.metadata,
-        }));
-        return results
-            .sort((a, b) => b.score - a.score)
-            .slice(0, topK);
-    }
     /**
      * Get vector search statistics
      */
@@ -277,7 +336,7 @@ export class WASMVectorSearch {
      */
     clearIndex() {
         this.vectorIndex = null;
-        console.log('[WASMVectorSearch] Index cleared');
+        console.error('[WASMVectorSearch] Index cleared');
     }
 }
 //# sourceMappingURL=WASMVectorSearch.js.map

package/dist/src/controllers/WASMVectorSearch.js.map

@@ -1 +1 @@
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package/dist/src/controllers/attention/AttentionCache.d.ts

@@ -0,0 +1,38 @@
+/**
+ * AttentionCache - Caching layer for attention mechanisms
+ *
+ * Handles:
+ * - Buffer pooling (getBuffer, returnBuffer)
+ * - Mask caching (getCachedMask)
+ * - Performance optimization through reuse
+ */
+/**
+ * AttentionCacheManager - Manages caching for attention operations
+ */
+export declare class AttentionCacheManager {
+    private bufferPool;
+    private maskCache;
+    /**
+     * Get a reusable buffer from the pool or allocate new one
+     * @param size - Buffer size in elements
+     * @returns Float32Array buffer
+     */
+    getBuffer(size: number): Float32Array;
+    /**
+     * Return a buffer to the pool for reuse
+     * @param buffer - Buffer to return
+     */
+    returnBuffer(buffer: Float32Array): void;
+    /**
+     * Get cached attention mask or generate new one
+     * @param seqLen - Sequence length
+     * @param causal - Whether to use causal masking
+     * @returns Cached or generated mask
+     */
+    getCachedMask(seqLen: number, causal: boolean): Float32Array;
+    /**
+     * Clear all caches
+     */
+    clear(): void;
+}
+//# sourceMappingURL=AttentionCache.d.ts.map

package/dist/src/controllers/attention/AttentionCache.d.ts.map

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package/dist/src/controllers/attention/AttentionCache.js

@@ -0,0 +1,80 @@
+/**
+ * AttentionCache - Caching layer for attention mechanisms
+ *
+ * Handles:
+ * - Buffer pooling (getBuffer, returnBuffer)
+ * - Mask caching (getCachedMask)
+ * - Performance optimization through reuse
+ */
+import { AttentionConfigManager } from './AttentionConfig.js';
+/**
+ * AttentionCacheManager - Manages caching for attention operations
+ */
+export class AttentionCacheManager {
+    // Buffer pooling for Float32Array reuse (Optimization: 70-90% fewer allocations)
+    bufferPool = new Map();
+    // Attention mask caching (Optimization: 30-40% faster for repeated ops)
+    maskCache = new Map();
+    /**
+     * Get a reusable buffer from the pool or allocate new one
+     * @param size - Buffer size in elements
+     * @returns Float32Array buffer
+     */
+    getBuffer(size) {
+        const pool = this.bufferPool.get(size) || [];
+        if (pool.length > 0) {
+            return pool.pop();
+        }
+        return new Float32Array(size);
+    }
+    /**
+     * Return a buffer to the pool for reuse
+     * @param buffer - Buffer to return
+     */
+    returnBuffer(buffer) {
+        const size = buffer.length;
+        const pool = this.bufferPool.get(size) || [];
+        if (pool.length < AttentionConfigManager.MAX_POOLED_BUFFERS) {
+            // Zero out buffer for security and reuse
+            buffer.fill(0);
+            pool.push(buffer);
+            this.bufferPool.set(size, pool);
+        }
+    }
+    /**
+     * Get cached attention mask or generate new one
+     * @param seqLen - Sequence length
+     * @param causal - Whether to use causal masking
+     * @returns Cached or generated mask
+     */
+    getCachedMask(seqLen, causal) {
+        const key = `${seqLen}_${causal}`;
+        if (this.maskCache.has(key)) {
+            return this.maskCache.get(key);
+        }
+        const mask = new Float32Array(seqLen * seqLen);
+        if (causal) {
+            // Generate causal mask (lower triangular)
+            for (let i = 0; i < seqLen; i++) {
+                for (let j = 0; j < seqLen; j++) {
+                    mask[i * seqLen + j] = j <= i ? 1.0 : 0.0;
+                }
+            }
+        }
+        else {
+            mask.fill(1.0);
+        }
+        if (this.maskCache.size < AttentionConfigManager.MAX_CACHED_MASKS) {
+            this.maskCache.set(key, mask);
+        }
+        return mask;
+    }
+    /**
+     * Clear all caches
+     */
+    clear() {
+        this.bufferPool.clear();
+        this.maskCache.clear();
+    }
+}
+//# sourceMappingURL=AttentionCache.js.map

package/dist/src/controllers/attention/AttentionCache.js.map

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package/dist/src/controllers/attention/AttentionConfig.d.ts

@@ -0,0 +1,127 @@
+/**
+ * AttentionConfig - Configuration management for attention mechanisms
+ *
+ * Handles:
+ * - Config validation
+ * - Constants
+ * - Default values
+ */
+/**
+ * Configuration for attention mechanisms
+ */
+export interface AttentionConfig {
+    /** Number of attention heads */
+    numHeads: number;
+    /** Dimension of each head */
+    headDim: number;
+    /** Total embedding dimension (usually numHeads * headDim) */
+    embedDim: number;
+    /** Dropout probability (0-1) */
+    dropout?: number;
+    /** Whether to use bias in linear projections */
+    bias?: boolean;
+    /** Use Flash Attention optimization if available */
+    useFlash?: boolean;
+    /** Use Linear Attention for O(n) complexity */
+    useLinear?: boolean;
+    /** Use Hyperbolic space for hierarchical data */
+    useHyperbolic?: boolean;
+    /** Use Mixture-of-Experts routing */
+    useMoE?: boolean;
+    /** Number of experts for MoE (default: 8) */
+    numExperts?: number;
+    /** Top-k experts to activate in MoE (default: 2) */
+    topK?: number;
+    /** Sparsification configuration */
+    sparsification?: {
+        enabled: boolean;
+        method: 'ppr' | 'random-walk' | 'spectral';
+        topK: number;
+    };
+    /** Graph partitioning configuration */
+    partitioning?: {
+        enabled: boolean;
+        method: 'stoer-wagner' | 'karger' | 'flow-based';
+        maxPartitionSize: number;
+    };
+}
+/**
+ * Options for attention operations (alias for AttentionConfig)
+ */
+export type AttentionOptions = AttentionConfig;
+/**
+ * Result from attention computation
+ */
+export interface AttentionResult {
+    /** Output embeddings after attention */
+    output: Float32Array;
+    /** Attention weights (optional, for visualization) */
+    weights?: Float32Array;
+    /** Execution time in milliseconds */
+    executionTimeMs: number;
+    /** Which mechanism was used */
+    mechanism: 'multi-head' | 'flash' | 'linear' | 'hyperbolic' | 'moe' | 'sparse' | 'partitioned';
+    /** Runtime environment */
+    runtime: 'napi' | 'wasm' | 'fallback';
+    /** Sparsification metadata (for sparse attention) */
+    sparsityMetadata?: {
+        method?: string;
+        topKNodes?: number;
+        sparsityRatio?: number;
+    };
+    /** Partitioning metadata (for partitioned attention) */
+    partitioningMetadata?: {
+        numPartitions?: number;
+        cutSize?: number;
+        avgPartitionSize?: number;
+    };
+}
+/**
+ * AttentionConfigManager - Manages configuration and constants
+ */
+export declare class AttentionConfigManager {
+    static readonly FLASH_V2_MIN_SPEEDUP = 2.49;
+    static readonly FLASH_V2_MAX_SPEEDUP = 7.47;
+    static readonly MASKED_SCORE: number;
+    static readonly MAX_POOLED_BUFFERS = 10;
+    static readonly MAX_CACHED_MASKS = 50;
+    private config;
+    constructor(config: AttentionConfig);
+    /**
+     * Apply default values to configuration
+     */
+    private applyDefaults;
+    /**
+     * Validate configuration values
+     */
+    private validateConfig;
+    /**
+     * Get the configuration
+     */
+    getConfig(): AttentionConfig;
+    /**
+     * Get number of heads
+     */
+    getNumHeads(): number;
+    /**
+     * Get head dimension
+     */
+    getHeadDim(): number;
+    /**
+     * Get embedding dimension
+     */
+    getEmbedDim(): number;
+    /**
+     * Get dropout rate
+     */
+    getDropout(): number;
+    /**
+     * Get number of experts for MoE
+     */
+    getNumExperts(): number;
+    /**
+     * Get top-k for MoE
+     */
+    getTopK(): number;
+}
+//# sourceMappingURL=AttentionConfig.d.ts.map

package/dist/src/controllers/attention/AttentionConfig.d.ts.map

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