agentdb 2.0.0-alpha.2 → 2.0.0-alpha.2.2

package/dist/malp/metrics/comparison.js

@@ -1,256 +0,0 @@
-/**
- * Model Comparison Utilities
- *
- * Compare MALP regression with Ordinary Least Squares (OLS)
- * and other regression methods.
- */
-import { createVector, createMatrix, leastSquares, matVecMultiply } from '../core/linalg';
-import { computeCCC } from '../core/ccc';
-import { MALPRegressor } from '../models/regressor';
-/**
- * Ordinary Least Squares Regressor
- */
-export class OLSRegressor {
-    coefficients = null;
-    intercept = 0;
-    isFitted = false;
-    fit(X, y) {
-        const XMatrix = Array.isArray(X) ? createMatrix(X) : X;
-        const yVector = Array.isArray(y) ? createVector(y) : y;
-        if (XMatrix.rows !== yVector.length) {
-            throw new Error(`Sample size mismatch: ${XMatrix.rows} !== ${yVector.length}`);
-        }
-        // Add intercept column
-        const XWithIntercept = this.addInterceptColumn(XMatrix);
-        // Solve normal equations
-        const params = leastSquares(XWithIntercept, yVector);
-        this.intercept = params.data[0];
-        this.coefficients = createVector(params.data.slice(1));
-        this.isFitted = true;
-        return this;
-    }
-    predict(X) {
-        if (!this.isFitted || !this.coefficients) {
-            throw new Error('Model must be fitted before making predictions');
-        }
-        const XMatrix = Array.isArray(X) ? createMatrix(X) : X;
-        const predictions = matVecMultiply(XMatrix, this.coefficients);
-        for (let i = 0; i < predictions.length; i++) {
-            predictions.data[i] += this.intercept;
-        }
-        return predictions.data;
-    }
-    addInterceptColumn(X) {
-        const data = X.data.map(row => [1, ...row]);
-        return createMatrix(data);
-    }
-    getCoefficients() {
-        return this.coefficients ? [...this.coefficients.data] : null;
-    }
-    getIntercept() {
-        return this.intercept;
-    }
-}
-/**
- * Compute comprehensive metrics for a regression model
- */
-export function computeRegressionMetrics(name, yTrue, yPred, nFeatures) {
-    const yTrueVec = Array.isArray(yTrue) ? createVector(yTrue) : yTrue;
-    const yPredVec = Array.isArray(yPred) ? createVector(yPred) : yPred;
-    if (yTrueVec.length !== yPredVec.length) {
-        throw new Error('Prediction length mismatch');
-    }
-    const n = yTrueVec.length;
-    // Concordance Correlation Coefficient
-    const { ccc } = computeCCC(yTrueVec, yPredVec);
-    // Mean Squared Error
-    let mse = 0;
-    for (let i = 0; i < n; i++) {
-        const error = yTrueVec.data[i] - yPredVec.data[i];
-        mse += error * error;
-    }
-    mse /= n;
-    // Root Mean Squared Error
-    const rmse = Math.sqrt(mse);
-    // Mean Absolute Error
-    let mae = 0;
-    for (let i = 0; i < n; i++) {
-        mae += Math.abs(yTrueVec.data[i] - yPredVec.data[i]);
-    }
-    mae /= n;
-    // R-squared
-    const yMean = yTrueVec.data.reduce((sum, val) => sum + val, 0) / n;
-    let ssTot = 0;
-    let ssRes = 0;
-    for (let i = 0; i < n; i++) {
-        ssTot += Math.pow(yTrueVec.data[i] - yMean, 2);
-        ssRes += Math.pow(yTrueVec.data[i] - yPredVec.data[i], 2);
-    }
-    const r2 = 1 - (ssRes / ssTot);
-    // Adjusted R-squared
-    const adjustedR2 = 1 - ((1 - r2) * (n - 1)) / (n - nFeatures - 1);
-    // AIC (Akaike Information Criterion)
-    const aic = n * Math.log(mse) + 2 * (nFeatures + 1);
-    // BIC (Bayesian Information Criterion)
-    const bic = n * Math.log(mse) + Math.log(n) * (nFeatures + 1);
-    return {
-        name,
-        ccc,
-        mse,
-        rmse,
-        mae,
-        r2,
-        adjustedR2,
-        aic,
-        bic
-    };
-}
-/**
- * Compare MALP and OLS models
- */
-export function compareMALPvsOLS(XTrain, yTrain, XTest, yTest) {
-    const XTrainMatrix = Array.isArray(XTrain) ? createMatrix(XTrain) : XTrain;
-    const yTrainVector = Array.isArray(yTrain) ? createVector(yTrain) : yTrain;
-    // Use train set for evaluation if test set not provided
-    const XEval = XTest ? (Array.isArray(XTest) ? createMatrix(XTest) : XTest) : XTrainMatrix;
-    const yEval = yTest ? (Array.isArray(yTest) ? createVector(yTest) : yTest) : yTrainVector;
-    // Train MALP model
-    const malpModel = new MALPRegressor({
-        fitIntercept: true,
-        maxIterations: 1000,
-        tolerance: 1e-6,
-        verbose: false
-    });
-    malpModel.fit(XTrainMatrix.data, yTrainVector.data);
-    const malpPred = malpModel.predict(XEval.data);
-    // Train OLS model
-    const olsModel = new OLSRegressor();
-    olsModel.fit(XTrainMatrix, yTrainVector);
-    const olsPred = olsModel.predict(XEval);
-    // Compute metrics
-    const malpMetrics = computeRegressionMetrics('MALP', yEval, malpPred, XTrainMatrix.cols);
-    const olsMetrics = computeRegressionMetrics('OLS', yEval, olsPred, XTrainMatrix.cols);
-    // Compute differences
-    const differences = {
-        ccc: malpMetrics.ccc - olsMetrics.ccc,
-        mse: malpMetrics.mse - olsMetrics.mse,
-        rmse: malpMetrics.rmse - olsMetrics.rmse,
-        mae: malpMetrics.mae - olsMetrics.mae,
-        r2: malpMetrics.r2 - olsMetrics.r2
-    };
-    // Determine winners (higher is better for CCC/R2, lower is better for MSE/RMSE/MAE)
-    const winner = {
-        ccc: malpMetrics.ccc > olsMetrics.ccc + 1e-6 ? 'MALP' :
-            olsMetrics.ccc > malpMetrics.ccc + 1e-6 ? 'OLS' : 'Tie',
-        mse: malpMetrics.mse < olsMetrics.mse - 1e-6 ? 'MALP' :
-            olsMetrics.mse < malpMetrics.mse - 1e-6 ? 'OLS' : 'Tie',
-        agreement: malpMetrics.ccc > olsMetrics.ccc + 1e-6 ? 'MALP' :
-            olsMetrics.ccc > malpMetrics.ccc + 1e-6 ? 'OLS' : 'Tie',
-        overall: 'Tie'
-    };
-    // Determine overall winner (mutable assignment)
-    let overallWinner = 'Tie';
-    const malpWins = [winner.ccc, winner.agreement].filter(w => w === 'MALP').length;
-    const olsWins = [winner.mse].filter(w => w === 'OLS').length;
-    if (malpWins > olsWins) {
-        overallWinner = 'MALP';
-    }
-    else if (olsWins > malpWins) {
-        overallWinner = 'OLS';
-    }
-    // Create final winner object with overall
-    const finalWinner = {
-        ...winner,
-        overall: overallWinner
-    };
-    // Generate summary
-    const summary = generateComparisonSummary(malpMetrics, olsMetrics, differences, finalWinner);
-    return {
-        malp: malpMetrics,
-        ols: olsMetrics,
-        differences,
-        winner: finalWinner,
-        summary
-    };
-}
-/**
- * Generate comparison summary text
- */
-function generateComparisonSummary(malp, ols, diff, winner) {
-    const lines = [
-        '=== MALP vs OLS Comparison ===',
-        '',
-        'Agreement (CCC):',
-        `  MALP: ${malp.ccc.toFixed(4)}`,
-        `  OLS:  ${ols.ccc.toFixed(4)}`,
-        `  Δ:    ${diff.ccc > 0 ? '+' : ''}${diff.ccc.toFixed(4)} (${winner.ccc} wins)`,
-        '',
-        'Prediction Error (RMSE):',
-        `  MALP: ${malp.rmse.toFixed(4)}`,
-        `  OLS:  ${ols.rmse.toFixed(4)}`,
-        `  Δ:    ${diff.rmse > 0 ? '+' : ''}${diff.rmse.toFixed(4)}`,
-        '',
-        'Explained Variance (R²):',
-        `  MALP: ${malp.r2.toFixed(4)}`,
-        `  OLS:  ${ols.r2.toFixed(4)}`,
-        `  Δ:    ${diff.r2 > 0 ? '+' : ''}${diff.r2.toFixed(4)}`,
-        '',
-        `Overall Winner: ${winner.overall}`,
-        '',
-        'Recommendation:',
-        winner.overall === 'MALP' ?
-            '  Use MALP for better agreement between predictions and observations.' :
-            winner.overall === 'OLS' ?
-                '  Use OLS for better prediction accuracy (lower MSE).' :
-                '  Both models perform similarly. Choose based on use case.'
-    ];
-    return lines.join('\n');
-}
-/**
- * Cross-validation comparison
- */
-export function crossValidateComparison(X, y, nFolds = 5) {
-    const XMatrix = Array.isArray(X) ? createMatrix(X) : X;
-    const yVector = Array.isArray(y) ? createVector(y) : y;
-    const n = XMatrix.rows;
-    const foldSize = Math.floor(n / nFolds);
-    const malpScores = [];
-    const olsScores = [];
-    for (let fold = 0; fold < nFolds; fold++) {
-        const testStart = fold * foldSize;
-        const testEnd = fold === nFolds - 1 ? n : (fold + 1) * foldSize;
-        // Split data
-        const XTrain = [];
-        const yTrain = [];
-        const XTest = [];
-        const yTest = [];
-        for (let i = 0; i < n; i++) {
-            if (i >= testStart && i < testEnd) {
-                XTest.push(XMatrix.data[i]);
-                yTest.push(yVector.data[i]);
-            }
-            else {
-                XTrain.push(XMatrix.data[i]);
-                yTrain.push(yVector.data[i]);
-            }
-        }
-        // Compare models
-        const comparison = compareMALPvsOLS(XTrain, yTrain, XTest, yTest);
-        malpScores.push(comparison.malp.ccc);
-        olsScores.push(comparison.ols.ccc);
-    }
-    // Compute statistics
-    const malpMean = malpScores.reduce((sum, val) => sum + val, 0) / nFolds;
-    const olsMean = olsScores.reduce((sum, val) => sum + val, 0) / nFolds;
-    const malpStd = Math.sqrt(malpScores.reduce((sum, val) => sum + Math.pow(val - malpMean, 2), 0) / nFolds);
-    const olsStd = Math.sqrt(olsScores.reduce((sum, val) => sum + Math.pow(val - olsMean, 2), 0) / nFolds);
-    return {
-        malpScores,
-        olsScores,
-        malpMean,
-        olsMean,
-        malpStd,
-        olsStd
-    };
-}
-//# sourceMappingURL=comparison.js.map

package/dist/malp/metrics/comparison.js.map

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package/dist/malp/metrics/index.d.ts

@@ -1,8 +0,0 @@
-/**
- * MALP Metrics Module
- *
- * Exports agreement metrics and model comparison utilities.
- */
-export * from './agreement.js';
-export * from './comparison.js';
-//# sourceMappingURL=index.d.ts.map

package/dist/malp/metrics/index.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/malp/metrics/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,cAAc,gBAAgB,CAAC;AAC/B,cAAc,iBAAiB,CAAC"}

package/dist/malp/metrics/index.js

@@ -1,8 +0,0 @@
-/**
- * MALP Metrics Module
- *
- * Exports agreement metrics and model comparison utilities.
- */
-export * from './agreement.js';
-export * from './comparison.js';
-//# sourceMappingURL=index.js.map

package/dist/malp/metrics/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/malp/metrics/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,cAAc,gBAAgB,CAAC;AAC/B,cAAc,iBAAiB,CAAC"}

package/dist/malp/metrics/performance.d.ts

@@ -1,61 +0,0 @@
-/**
- * Performance Metrics Collection for MALP
- *
- * Tracks and reports performance metrics including:
- * - Latency (mean, median, P95, P99)
- * - Throughput (samples/sec, operations/sec)
- * - Memory usage
- * - Resource utilization
- */
-export interface LatencyMetrics {
-    mean: number;
-    median: number;
-    p95: number;
-    p99: number;
-    min: number;
-    max: number;
-    stdDev: number;
-}
-export interface ThroughputMetrics {
-    samplesPerSecond: number;
-    operationsPerSecond: number;
-    averageBatchSize: number;
-}
-export interface MemoryMetrics {
-    current: number;
-    peak: number;
-    allocated: number;
-    perSample: number;
-}
-export interface PerformanceReport {
-    timestamp: number;
-    duration: number;
-    latency: LatencyMetrics;
-    throughput: ThroughputMetrics;
-    memory: MemoryMetrics;
-    samples: number;
-    operations: number;
-}
-export declare class PerformanceMonitor {
-    private latencies;
-    private startTime;
-    private endTime;
-    private sampleCount;
-    private operationCount;
-    private memorySnapshots;
-    start(): void;
-    recordLatency(latency: number): void;
-    recordSamples(count: number): void;
-    recordOperation(): void;
-    recordMemory(bytes: number): void;
-    stop(): PerformanceReport;
-    private calculateLatencyMetrics;
-    private calculateThroughputMetrics;
-    private calculateMemoryMetrics;
-    generateReport(report: PerformanceReport): string;
-}
-/**
- * Compare two performance reports
- */
-export declare function compareReports(baseline: PerformanceReport, current: PerformanceReport): string;
-//# sourceMappingURL=performance.d.ts.map

package/dist/malp/metrics/performance.d.ts.map

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package/dist/malp/metrics/performance.js

@@ -1,190 +0,0 @@
-/**
- * Performance Metrics Collection for MALP
- *
- * Tracks and reports performance metrics including:
- * - Latency (mean, median, P95, P99)
- * - Throughput (samples/sec, operations/sec)
- * - Memory usage
- * - Resource utilization
- */
-export class PerformanceMonitor {
-    latencies = [];
-    startTime = 0;
-    endTime = 0;
-    sampleCount = 0;
-    operationCount = 0;
-    memorySnapshots = [];
-    start() {
-        this.startTime = performance.now();
-        this.latencies = [];
-        this.sampleCount = 0;
-        this.operationCount = 0;
-        this.memorySnapshots = [];
-    }
-    recordLatency(latency) {
-        this.latencies.push(latency);
-    }
-    recordSamples(count) {
-        this.sampleCount += count;
-    }
-    recordOperation() {
-        this.operationCount++;
-    }
-    recordMemory(bytes) {
-        this.memorySnapshots.push(bytes);
-    }
-    stop() {
-        this.endTime = performance.now();
-        const duration = this.endTime - this.startTime;
-        return {
-            timestamp: Date.now(),
-            duration,
-            latency: this.calculateLatencyMetrics(),
-            throughput: this.calculateThroughputMetrics(duration),
-            memory: this.calculateMemoryMetrics(),
-            samples: this.sampleCount,
-            operations: this.operationCount
-        };
-    }
-    calculateLatencyMetrics() {
-        if (this.latencies.length === 0) {
-            return {
-                mean: 0,
-                median: 0,
-                p95: 0,
-                p99: 0,
-                min: 0,
-                max: 0,
-                stdDev: 0
-            };
-        }
-        const sorted = [...this.latencies].sort((a, b) => a - b);
-        const mean = this.latencies.reduce((a, b) => a + b, 0) / this.latencies.length;
-        const variance = this.latencies.reduce((sum, val) => sum + Math.pow(val - mean, 2), 0) / this.latencies.length;
-        const stdDev = Math.sqrt(variance);
-        return {
-            mean,
-            median: sorted[Math.floor(sorted.length * 0.5)],
-            p95: sorted[Math.floor(sorted.length * 0.95)],
-            p99: sorted[Math.floor(sorted.length * 0.99)],
-            min: sorted[0],
-            max: sorted[sorted.length - 1],
-            stdDev
-        };
-    }
-    calculateThroughputMetrics(duration) {
-        const durationSeconds = duration / 1000;
-        return {
-            samplesPerSecond: this.sampleCount / durationSeconds,
-            operationsPerSecond: this.operationCount / durationSeconds,
-            averageBatchSize: this.sampleCount / Math.max(1, this.operationCount)
-        };
-    }
-    calculateMemoryMetrics() {
-        if (this.memorySnapshots.length === 0) {
-            return {
-                current: 0,
-                peak: 0,
-                allocated: 0,
-                perSample: 0
-            };
-        }
-        const current = this.memorySnapshots[this.memorySnapshots.length - 1];
-        const peak = Math.max(...this.memorySnapshots);
-        const allocated = this.memorySnapshots.reduce((a, b) => a + b, 0) / this.memorySnapshots.length;
-        const perSample = this.sampleCount > 0 ? allocated / this.sampleCount : 0;
-        return {
-            current,
-            peak,
-            allocated,
-            perSample
-        };
-    }
-    generateReport(report) {
-        const lines = [];
-        lines.push('═══════════════════════════════════════════════════');
-        lines.push('         MALP Performance Report');
-        lines.push('═══════════════════════════════════════════════════');
-        lines.push('');
-        lines.push(`Timestamp: ${new Date(report.timestamp).toISOString()}`);
-        lines.push(`Duration:  ${report.duration.toFixed(2)}ms`);
-        lines.push('');
-        lines.push('───────────────────────────────────────────────────');
-        lines.push('Latency Metrics');
-        lines.push('───────────────────────────────────────────────────');
-        lines.push(`  Mean:   ${report.latency.mean.toFixed(3)}ms`);
-        lines.push(`  Median: ${report.latency.median.toFixed(3)}ms`);
-        lines.push(`  P95:    ${report.latency.p95.toFixed(3)}ms`);
-        lines.push(`  P99:    ${report.latency.p99.toFixed(3)}ms`);
-        lines.push(`  Min:    ${report.latency.min.toFixed(3)}ms`);
-        lines.push(`  Max:    ${report.latency.max.toFixed(3)}ms`);
-        lines.push(`  StdDev: ${report.latency.stdDev.toFixed(3)}ms`);
-        lines.push('');
-        lines.push('───────────────────────────────────────────────────');
-        lines.push('Throughput Metrics');
-        lines.push('───────────────────────────────────────────────────');
-        lines.push(`  Samples/sec:    ${report.throughput.samplesPerSecond.toFixed(0)}`);
-        lines.push(`  Operations/sec: ${report.throughput.operationsPerSecond.toFixed(0)}`);
-        lines.push(`  Avg Batch Size: ${report.throughput.averageBatchSize.toFixed(1)}`);
-        lines.push('');
-        lines.push('───────────────────────────────────────────────────');
-        lines.push('Memory Metrics');
-        lines.push('───────────────────────────────────────────────────');
-        lines.push(`  Current:    ${(report.memory.current / 1024).toFixed(2)} KB`);
-        lines.push(`  Peak:       ${(report.memory.peak / 1024).toFixed(2)} KB`);
-        lines.push(`  Allocated:  ${(report.memory.allocated / 1024).toFixed(2)} KB`);
-        lines.push(`  Per Sample: ${report.memory.perSample.toFixed(2)} bytes`);
-        lines.push('');
-        lines.push('───────────────────────────────────────────────────');
-        lines.push('Summary');
-        lines.push('───────────────────────────────────────────────────');
-        lines.push(`  Total Samples:    ${report.samples}`);
-        lines.push(`  Total Operations: ${report.operations}`);
-        lines.push('');
-        lines.push('═══════════════════════════════════════════════════');
-        return lines.join('\n');
-    }
-}
-/**
- * Compare two performance reports
- */
-export function compareReports(baseline, current) {
-    const lines = [];
-    lines.push('═══════════════════════════════════════════════════');
-    lines.push('      Performance Comparison Report');
-    lines.push('═══════════════════════════════════════════════════');
-    lines.push('');
-    const latencyImprovement = ((baseline.latency.mean - current.latency.mean) / baseline.latency.mean) * 100;
-    const throughputImprovement = ((current.throughput.samplesPerSecond - baseline.throughput.samplesPerSecond) / baseline.throughput.samplesPerSecond) * 100;
-    const memoryImprovement = ((baseline.memory.peak - current.memory.peak) / baseline.memory.peak) * 100;
-    lines.push('Latency (lower is better):');
-    lines.push(`  Baseline: ${baseline.latency.mean.toFixed(3)}ms`);
-    lines.push(`  Current:  ${current.latency.mean.toFixed(3)}ms`);
-    lines.push(`  Change:   ${latencyImprovement > 0 ? '+' : ''}${latencyImprovement.toFixed(1)}%`);
-    lines.push('');
-    lines.push('Throughput (higher is better):');
-    lines.push(`  Baseline: ${baseline.throughput.samplesPerSecond.toFixed(0)} samples/sec`);
-    lines.push(`  Current:  ${current.throughput.samplesPerSecond.toFixed(0)} samples/sec`);
-    lines.push(`  Change:   ${throughputImprovement > 0 ? '+' : ''}${throughputImprovement.toFixed(1)}%`);
-    lines.push('');
-    lines.push('Memory (lower is better):');
-    lines.push(`  Baseline: ${(baseline.memory.peak / 1024).toFixed(2)} KB`);
-    lines.push(`  Current:  ${(current.memory.peak / 1024).toFixed(2)} KB`);
-    lines.push(`  Change:   ${memoryImprovement > 0 ? '+' : ''}${memoryImprovement.toFixed(1)}%`);
-    lines.push('');
-    lines.push('Overall Assessment:');
-    const improvements = [latencyImprovement, throughputImprovement, memoryImprovement].filter(x => x > 0).length;
-    if (improvements >= 2) {
-        lines.push('  ✅ Performance improved!');
-    }
-    else if (improvements === 1) {
-        lines.push('  ⚠️  Mixed results');
-    }
-    else {
-        lines.push('  ❌ Performance regressed');
-    }
-    lines.push('');
-    lines.push('═══════════════════════════════════════════════════');
-    return lines.join('\n');
-}
-//# sourceMappingURL=performance.js.map

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package/dist/malp/models/index.d.ts

@@ -1,7 +0,0 @@
-/**
- * MALP Models Module
- *
- * Exports MALP regression models.
- */
-export * from './regressor';
-//# sourceMappingURL=index.d.ts.map

package/dist/malp/models/index.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/malp/models/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,cAAc,aAAa,CAAC"}

package/dist/malp/models/index.js

@@ -1,7 +0,0 @@
-/**
- * MALP Models Module
- *
- * Exports MALP regression models.
- */
-export * from './regressor';
-//# sourceMappingURL=index.js.map

package/dist/malp/models/index.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/malp/models/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,cAAc,aAAa,CAAC"}