agentdb 2.0.0-alpha.2 → 2.0.0-alpha.2.1

package/dist/malp/models/malp.d.ts

@@ -1,116 +0,0 @@
-/**
- * MALP Regressor - Maximum Agreement Linear Predictor
- *
- * A linear regression model that maximizes the Concordance Correlation Coefficient (CCC)
- * instead of minimizing squared error. Provides better agreement between predictions
- * and observations, especially for measurement validation and method comparison.
- */
-import { Vector, Matrix } from '../core/linalg.js';
-import { OptimizerConfig, OptimizationResult } from '../core/optimizer.js';
-/**
- * MALP model configuration
- */
-export interface MALPConfig {
-    /** Whether to fit an intercept term */
-    fitIntercept: boolean;
-    /** Optimizer configuration */
-    optimizer: Partial<OptimizerConfig>;
-    /** Initialize with least squares solution */
-    useLeastSquaresInit: boolean;
-}
-/**
- * Default MALP configuration
- */
-export declare const DEFAULT_MALP_CONFIG: MALPConfig;
-/**
- * MALP Regressor Model
- *
- * Fits a linear model by maximizing the Concordance Correlation Coefficient.
- *
- * Usage:
- * ```typescript
- * const model = new MALPRegressor();
- * model.fit(X, y);
- * const predictions = model.predict(X);
- * const score = model.score(X, y);
- * ```
- */
-export declare class MALPRegressor {
-    private config;
-    private coefficients;
-    private intercept;
-    private isFitted;
-    private optimizationResult;
-    constructor(config?: Partial<MALPConfig>);
-    /**
-     * Fit the MALP model to training data
-     *
-     * @param X - Feature matrix (n_samples × n_features)
-     * @param y - Target values (n_samples)
-     * @returns this (for method chaining)
-     */
-    fit(X: number[][] | Matrix, y: number[] | Vector): this;
-    /**
-     * Make predictions using the fitted model
-     *
-     * @param X - Feature matrix (n_samples × n_features)
-     * @returns Predicted values (n_samples)
-     */
-    predict(X: number[][] | Matrix): number[];
-    /**
-     * Compute CCC score on test data
-     *
-     * @param X - Feature matrix (n_samples × n_features)
-     * @param y - True target values (n_samples)
-     * @returns CCC score (higher is better, range [-1, 1])
-     */
-    score(X: number[][] | Matrix, y: number[] | Vector): number;
-    /**
-     * Get model coefficients (excluding intercept)
-     */
-    getCoefficients(): number[] | null;
-    /**
-     * Get model intercept
-     */
-    getIntercept(): number;
-    /**
-     * Check if model is fitted
-     */
-    isTrained(): boolean;
-    /**
-     * Get optimization result details
-     */
-    getOptimizationResult(): OptimizationResult | null;
-    /**
-     * Get model summary statistics
-     */
-    summary(): {
-        coefficients: number[] | null;
-        intercept: number;
-        isFitted: boolean;
-        finalCCC: number | null;
-        iterations: number | null;
-        converged: boolean | null;
-    };
-    /**
-     * Reset the model to unfitted state
-     */
-    reset(): void;
-    /**
-     * Clone the model configuration (not the fitted state)
-     */
-    clone(): MALPRegressor;
-    /**
-     * Set model parameters directly (for advanced use cases)
-     */
-    setParams(coefficients: number[], intercept?: number): void;
-    /**
-     * Get feature importance based on coefficient magnitudes
-     */
-    getFeatureImportance(): number[] | null;
-}
-/**
- * Convenience function for fitting MALP model
- */
-export declare function fitMALP(X: number[][] | Matrix, y: number[] | Vector, config?: Partial<MALPConfig>): MALPRegressor;
-//# sourceMappingURL=malp.d.ts.map

package/dist/malp/models/malp.d.ts.map

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package/dist/malp/models/malp.js

@@ -1,206 +0,0 @@
-/**
- * MALP Regressor - Maximum Agreement Linear Predictor
- *
- * A linear regression model that maximizes the Concordance Correlation Coefficient (CCC)
- * instead of minimizing squared error. Provides better agreement between predictions
- * and observations, especially for measurement validation and method comparison.
- */
-import { createVector, createMatrix, addIntercept, matVecMultiply, leastSquares } from '../core/linalg.js';
-import { computeCCC } from '../core/ccc.js';
-import { GradientAscentOptimizer, DEFAULT_OPTIMIZER_CONFIG } from '../core/optimizer.js';
-/**
- * Default MALP configuration
- */
-export const DEFAULT_MALP_CONFIG = {
-    fitIntercept: true,
-    optimizer: DEFAULT_OPTIMIZER_CONFIG,
-    useLeastSquaresInit: true
-};
-/**
- * MALP Regressor Model
- *
- * Fits a linear model by maximizing the Concordance Correlation Coefficient.
- *
- * Usage:
- * ```typescript
- * const model = new MALPRegressor();
- * model.fit(X, y);
- * const predictions = model.predict(X);
- * const score = model.score(X, y);
- * ```
- */
-export class MALPRegressor {
-    config;
-    coefficients = null;
-    intercept = 0;
-    isFitted = false;
-    optimizationResult = null;
-    constructor(config = {}) {
-        this.config = {
-            ...DEFAULT_MALP_CONFIG,
-            ...config,
-            optimizer: { ...DEFAULT_OPTIMIZER_CONFIG, ...(config.optimizer || {}) }
-        };
-    }
-    /**
-     * Fit the MALP model to training data
-     *
-     * @param X - Feature matrix (n_samples × n_features)
-     * @param y - Target values (n_samples)
-     * @returns this (for method chaining)
-     */
-    fit(X, y) {
-        // Convert inputs to standard format
-        const XMatrix = Array.isArray(X) ? createMatrix(X) : X;
-        const yVector = Array.isArray(y) ? createVector(y) : y;
-        if (XMatrix.rows !== yVector.length) {
-            throw new Error(`Sample size mismatch: ${XMatrix.rows} !== ${yVector.length}`);
-        }
-        // Add intercept column if needed
-        const XWithIntercept = this.config.fitIntercept ? addIntercept(XMatrix) : XMatrix;
-        // Initialize parameters
-        let initialParams;
-        if (this.config.useLeastSquaresInit) {
-            // Initialize with least squares solution
-            initialParams = leastSquares(XWithIntercept, yVector);
-        }
-        else {
-            // Initialize with zeros
-            initialParams = createVector(new Array(XWithIntercept.cols).fill(0));
-        }
-        // Optimize parameters to maximize CCC
-        const optimizer = new GradientAscentOptimizer(this.config.optimizer);
-        this.optimizationResult = optimizer.optimize(XWithIntercept, yVector, initialParams);
-        // Extract coefficients and intercept
-        const params = this.optimizationResult.parameters;
-        if (this.config.fitIntercept) {
-            this.intercept = params.data[0];
-            this.coefficients = createVector(params.data.slice(1));
-        }
-        else {
-            this.intercept = 0;
-            this.coefficients = params;
-        }
-        this.isFitted = true;
-        return this;
-    }
-    /**
-     * Make predictions using the fitted model
-     *
-     * @param X - Feature matrix (n_samples × n_features)
-     * @returns Predicted values (n_samples)
-     */
-    predict(X) {
-        if (!this.isFitted || !this.coefficients) {
-            throw new Error('Model must be fitted before making predictions');
-        }
-        const XMatrix = Array.isArray(X) ? createMatrix(X) : X;
-        if (XMatrix.cols !== this.coefficients.length) {
-            throw new Error(`Feature dimension mismatch: ${XMatrix.cols} !== ${this.coefficients.length}`);
-        }
-        // Compute predictions: y_pred = X * β + intercept
-        const predictions = matVecMultiply(XMatrix, this.coefficients);
-        if (this.config.fitIntercept) {
-            for (let i = 0; i < predictions.length; i++) {
-                predictions.data[i] += this.intercept;
-            }
-        }
-        return predictions.data;
-    }
-    /**
-     * Compute CCC score on test data
-     *
-     * @param X - Feature matrix (n_samples × n_features)
-     * @param y - True target values (n_samples)
-     * @returns CCC score (higher is better, range [-1, 1])
-     */
-    score(X, y) {
-        const predictions = this.predict(X);
-        const yVector = Array.isArray(y) ? createVector(y) : y;
-        const predVector = createVector(predictions);
-        const { ccc } = computeCCC(yVector, predVector);
-        return ccc;
-    }
-    /**
-     * Get model coefficients (excluding intercept)
-     */
-    getCoefficients() {
-        return this.coefficients ? [...this.coefficients.data] : null;
-    }
-    /**
-     * Get model intercept
-     */
-    getIntercept() {
-        return this.intercept;
-    }
-    /**
-     * Check if model is fitted
-     */
-    isTrained() {
-        return this.isFitted;
-    }
-    /**
-     * Get optimization result details
-     */
-    getOptimizationResult() {
-        return this.optimizationResult ? { ...this.optimizationResult } : null;
-    }
-    /**
-     * Get model summary statistics
-     */
-    summary() {
-        return {
-            coefficients: this.getCoefficients(),
-            intercept: this.intercept,
-            isFitted: this.isFitted,
-            finalCCC: this.optimizationResult?.finalCCC ?? null,
-            iterations: this.optimizationResult?.iterations ?? null,
-            converged: this.optimizationResult?.converged ?? null
-        };
-    }
-    /**
-     * Reset the model to unfitted state
-     */
-    reset() {
-        this.coefficients = null;
-        this.intercept = 0;
-        this.isFitted = false;
-        this.optimizationResult = null;
-    }
-    /**
-     * Clone the model configuration (not the fitted state)
-     */
-    clone() {
-        return new MALPRegressor(this.config);
-    }
-    /**
-     * Set model parameters directly (for advanced use cases)
-     */
-    setParams(coefficients, intercept = 0) {
-        this.coefficients = createVector(coefficients);
-        this.intercept = intercept;
-        this.isFitted = true;
-    }
-    /**
-     * Get feature importance based on coefficient magnitudes
-     */
-    getFeatureImportance() {
-        if (!this.coefficients) {
-            return null;
-        }
-        // Compute absolute values for importance
-        const importance = this.coefficients.data.map(Math.abs);
-        // Normalize to sum to 1
-        const total = importance.reduce((sum, val) => sum + val, 0);
-        return total > 0 ? importance.map(val => val / total) : importance;
-    }
-}
-/**
- * Convenience function for fitting MALP model
- */
-export function fitMALP(X, y, config) {
-    const model = new MALPRegressor(config);
-    model.fit(X, y);
-    return model;
-}
-//# sourceMappingURL=malp.js.map

package/dist/malp/models/malp.js.map

@@ -1 +0,0 @@
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package/dist/malp/models/regressor.d.ts

@@ -1,80 +0,0 @@
-/**
- * MALP Regressor - Maximum Agreement Linear Program
- *
- * Linear regression that maximizes concordance correlation coefficient
- * instead of minimizing squared error.
- */
-import { OptimizerConfig } from '../core/optimizer';
-export interface MALPRegressorConfig extends Partial<OptimizerConfig> {
-    fitIntercept?: boolean;
-    normalize?: boolean;
-    regularization?: number;
-}
-export type MALPConfig = MALPRegressorConfig;
-export declare const DEFAULT_MALP_CONFIG: Required<MALPRegressorConfig>;
-export interface FitResult {
-    weights: number[];
-    intercept: number;
-    ccc: number;
-    r2: number;
-    rmse: number;
-    mae: number;
-    iterations: number;
-    converged: boolean;
-}
-export declare class MALPRegressor {
-    private weights;
-    private intercept;
-    private optimizer;
-    private config;
-    private xMean;
-    private xStd;
-    private fitted;
-    constructor(config?: MALPRegressorConfig);
-    /**
-     * Fit MALP regressor to training data
-     * @param X Feature matrix (n_samples × n_features)
-     * @param y Target values (n_samples)
-     */
-    fit(X: number[][], y: number[]): FitResult;
-    /**
-     * Predict target values for new data
-     * @param X Feature matrix (n_samples × n_features)
-     */
-    predict(X: number[][]): number[];
-    /**
-     * Score the model on test data
-     * @param X Feature matrix
-     * @param y True target values
-     * @returns CCC score
-     */
-    score(X: number[][], y: number[]): number;
-    /**
-     * Get model coefficients
-     */
-    getCoefficients(): {
-        weights: number[];
-        intercept: number;
-    };
-    /**
-     * Normalize features (zero mean, unit variance)
-     */
-    private normalizeFeatures;
-    /**
-     * Compute evaluation metrics
-     */
-    private computeMetrics;
-}
-/**
- * Cross-validation for MALP regressor
- */
-export declare function crossValidateMALP(X: number[][], y: number[], nFolds?: number, config?: MALPRegressorConfig): {
-    meanCCC: number;
-    stdCCC: number;
-    foldScores: number[];
-};
-/**
- * Convenience function to fit a MALP model
- */
-export declare function fitMALP(X: number[][], y: number[], config?: MALPRegressorConfig): FitResult;
-//# sourceMappingURL=regressor.d.ts.map

package/dist/malp/models/regressor.d.ts.map

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package/dist/malp/models/regressor.js

@@ -1,229 +0,0 @@
-/**
- * MALP Regressor - Maximum Agreement Linear Program
- *
- * Linear regression that maximizes concordance correlation coefficient
- * instead of minimizing squared error.
- */
-import { calculateCCC } from '../core/ccc';
-import { MALPOptimizer } from '../core/optimizer';
-export const DEFAULT_MALP_CONFIG = {
-    learningRate: 0.01,
-    maxIterations: 1000,
-    tolerance: 1e-6,
-    momentum: 0.9,
-    adaptive: true,
-    verbose: false,
-    fitIntercept: true,
-    normalize: false,
-    regularization: 0.0
-};
-export class MALPRegressor {
-    weights = [];
-    intercept = 0;
-    optimizer;
-    config;
-    xMean = [];
-    xStd = [];
-    fitted = false;
-    constructor(config = {}) {
-        this.config = {
-            learningRate: config.learningRate ?? 0.01,
-            maxIterations: config.maxIterations ?? 1000,
-            tolerance: config.tolerance ?? 1e-6,
-            momentum: config.momentum ?? 0.9,
-            adaptive: config.adaptive ?? true,
-            verbose: config.verbose ?? false,
-            fitIntercept: config.fitIntercept ?? true,
-            normalize: config.normalize ?? false,
-            regularization: config.regularization ?? 0.0
-        };
-        this.optimizer = new MALPOptimizer({
-            learningRate: this.config.learningRate,
-            maxIterations: this.config.maxIterations,
-            tolerance: this.config.tolerance,
-            momentum: this.config.momentum,
-            adaptive: this.config.adaptive,
-            verbose: this.config.verbose
-        });
-    }
-    /**
-     * Fit MALP regressor to training data
-     * @param X Feature matrix (n_samples × n_features)
-     * @param y Target values (n_samples)
-     */
-    fit(X, y) {
-        if (X.length !== y.length) {
-            throw new Error(`Sample size mismatch: X has ${X.length}, y has ${y.length}`);
-        }
-        if (X.length === 0) {
-            throw new Error('Cannot fit with empty dataset');
-        }
-        // Normalize features if requested
-        let XProcessed = X;
-        if (this.config.normalize) {
-            const result = this.normalizeFeatures(X);
-            XProcessed = result.normalized;
-            this.xMean = result.mean;
-            this.xStd = result.std;
-        }
-        // Add intercept column if requested
-        if (this.config.fitIntercept) {
-            XProcessed = XProcessed.map(row => [1, ...row]);
-        }
-        // Optimize weights to maximize CCC
-        const optimResult = this.optimizer.optimize(XProcessed, y);
-        // Extract weights and intercept
-        if (this.config.fitIntercept) {
-            this.intercept = optimResult.weights[0];
-            this.weights = optimResult.weights.slice(1);
-        }
-        else {
-            this.intercept = 0;
-            this.weights = optimResult.weights;
-        }
-        this.fitted = true;
-        // Compute final metrics
-        const yPred = this.predict(X);
-        const metrics = this.computeMetrics(y, yPred);
-        return {
-            weights: this.weights,
-            intercept: this.intercept,
-            ccc: optimResult.finalCCC,
-            r2: metrics.r2,
-            rmse: metrics.rmse,
-            mae: metrics.mae,
-            iterations: optimResult.iterations,
-            converged: optimResult.converged
-        };
-    }
-    /**
-     * Predict target values for new data
-     * @param X Feature matrix (n_samples × n_features)
-     */
-    predict(X) {
-        if (!this.fitted) {
-            throw new Error('Model must be fitted before prediction');
-        }
-        if (X[0].length !== this.weights.length) {
-            throw new Error(`Feature dimension mismatch: expected ${this.weights.length}, got ${X[0].length}`);
-        }
-        return X.map(row => {
-            let xProcessed = row;
-            // Apply normalization if used during training
-            if (this.config.normalize) {
-                xProcessed = row.map((val, j) => (val - this.xMean[j]) / this.xStd[j]);
-            }
-            // Compute prediction
-            const prediction = xProcessed.reduce((sum, val, j) => sum + val * this.weights[j], this.intercept);
-            return prediction;
-        });
-    }
-    /**
-     * Score the model on test data
-     * @param X Feature matrix
-     * @param y True target values
-     * @returns CCC score
-     */
-    score(X, y) {
-        const yPred = this.predict(X);
-        const result = calculateCCC(yPred, y);
-        return result.ccc;
-    }
-    /**
-     * Get model coefficients
-     */
-    getCoefficients() {
-        if (!this.fitted) {
-            throw new Error('Model not fitted');
-        }
-        return {
-            weights: [...this.weights],
-            intercept: this.intercept
-        };
-    }
-    /**
-     * Normalize features (zero mean, unit variance)
-     */
-    normalizeFeatures(X) {
-        const nFeatures = X[0].length;
-        const mean = Array(nFeatures).fill(0);
-        const std = Array(nFeatures).fill(0);
-        // Compute means
-        for (const row of X) {
-            for (let j = 0; j < nFeatures; j++) {
-                mean[j] += row[j];
-            }
-        }
-        for (let j = 0; j < nFeatures; j++) {
-            mean[j] /= X.length;
-        }
-        // Compute standard deviations
-        for (const row of X) {
-            for (let j = 0; j < nFeatures; j++) {
-                std[j] += (row[j] - mean[j]) ** 2;
-            }
-        }
-        for (let j = 0; j < nFeatures; j++) {
-            std[j] = Math.sqrt(std[j] / X.length);
-            if (std[j] === 0)
-                std[j] = 1; // Prevent division by zero
-        }
-        // Normalize
-        const normalized = X.map(row => row.map((val, j) => (val - mean[j]) / std[j]));
-        return { normalized, mean, std };
-    }
-    /**
-     * Compute evaluation metrics
-     */
-    computeMetrics(yTrue, yPred) {
-        const n = yTrue.length;
-        const yMean = yTrue.reduce((sum, val) => sum + val, 0) / n;
-        let ssRes = 0;
-        let ssTot = 0;
-        let sumAbsError = 0;
-        for (let i = 0; i < n; i++) {
-            const error = yTrue[i] - yPred[i];
-            ssRes += error * error;
-            ssTot += (yTrue[i] - yMean) ** 2;
-            sumAbsError += Math.abs(error);
-        }
-        const r2 = 1 - (ssRes / ssTot);
-        const rmse = Math.sqrt(ssRes / n);
-        const mae = sumAbsError / n;
-        return { r2, rmse, mae };
-    }
-}
-/**
- * Cross-validation for MALP regressor
- */
-export function crossValidateMALP(X, y, nFolds = 5, config = {}) {
-    const n = X.length;
-    const foldSize = Math.floor(n / nFolds);
-    const scores = [];
-    for (let fold = 0; fold < nFolds; fold++) {
-        const testStart = fold * foldSize;
-        const testEnd = fold === nFolds - 1 ? n : testStart + foldSize;
-        // Split data
-        const XTrain = [...X.slice(0, testStart), ...X.slice(testEnd)];
-        const yTrain = [...y.slice(0, testStart), ...y.slice(testEnd)];
-        const XTest = X.slice(testStart, testEnd);
-        const yTest = y.slice(testStart, testEnd);
-        // Fit and score
-        const model = new MALPRegressor(config);
-        model.fit(XTrain, yTrain);
-        const score = model.score(XTest, yTest);
-        scores.push(score);
-    }
-    const meanCCC = scores.reduce((sum, s) => sum + s, 0) / nFolds;
-    const variance = scores.reduce((sum, s) => sum + (s - meanCCC) ** 2, 0) / nFolds;
-    const stdCCC = Math.sqrt(variance);
-    return { meanCCC, stdCCC, foldScores: scores };
-}
-/**
- * Convenience function to fit a MALP model
- */
-export function fitMALP(X, y, config = {}) {
-    const model = new MALPRegressor(config);
-    return model.fit(X, y);
-}
-//# sourceMappingURL=regressor.js.map

package/dist/malp/models/regressor.js.map

@@ -1 +0,0 @@
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