agent-skills-standard 2.6.1 → 2.6.4

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+ MIT License
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+
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+ Copyright (c) 2026 Hoang Nguyen
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ SOFTWARE.
package/README.md CHANGED
@@ -5,7 +5,7 @@
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  **Sync 242 AI coding standards to any project in one command.** Works with Cursor, Claude Code, GitHub Copilot, Gemini, Windsurf, Trae, Kiro, and Roo.
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- **Current release:** `v2.5.1` — automated SkillSpector security scanning, pull request evaluation gates, and verified release tags.
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+ **Current release:** `v2.6.4` — skill validator accepts package directories under `scripts/`; SkillSpector security scanning, pull request evaluation gates, and verified release tags.
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  ```bash
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  npx agent-skills-standard@latest init # detect your stack
@@ -44,7 +44,55 @@ The result: your AI agent reads `AGENTS.md`, follows the router to the right cat
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  | `validate` | Checks your custom skills against format and token standards |
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  | `feedback` | Submits improvement suggestions to the registry |
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  | `upgrade` | Updates the CLI to the latest version |
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+ | `doctor` | Check installation health (config, agents, lock file, MCP, hooks, CLI version) with human or JSON output and safe repairs |
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+ | `restore` | List backups in `.ags/backups` or restore one (replace-only) |
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+ | `uninstall` | Remove files ags installed (keeps files you edited); backs up first |
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+ | `verify` | Check installed files against `.skills-lock.json` (`--strict`, `--attestation`) |
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+ | `policy` | Manage and check project agent policies (status, check, validate, compile, adopt) |
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+
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+ ### Install Safety & Sync Options
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+
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+ `ags sync` safely tracks owned files in `.skills-lock.json` v2 and preserves local user edits:
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+
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+ - **User-Edit Preservation**: If you edited a synced skill, workflow, specialist, or bridge file, sync keeps your version and warns instead of overwriting it.
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+ - `--dry-run`: Preview additions, updates, kept edits, and prunes without writing anything to disk or modifying configs.
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+ - `--dry-run --verbose`: List every affected file path by status.
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+ - `--dry-run --json`: Emit the full install plan as machine-readable JSON (`schema_version: 1, kind: 'sync.plan'`).
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+ - `--force <paths...>`: Overwrite specified user-edited files with upstream versions (a backup is created first).
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+ - **Automatic Backups**: Destructive changes (pruning or forced overwrites) automatically snapshot previous files into `.ags/backups/<timestamp>/` (retaining the 3 most recent backups).
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+
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+ ### Restore & Uninstall
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+
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+ - `ags restore [--list] [id]`: List backups or restore files from `.ags/backups/<id>` (replace-only; does not delete newer files or modify lockfile).
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+ - `ags uninstall [--agent <agents...>] [--category <categories...>] [--all] [--dry-run] [-y, --yes]`:
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+ - Removes only manifest entries whose on-disk sha256 still matches (owned-unchanged).
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+ - Keeps user-edited files byte-identical.
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+ - Automatically creates a backup of removed files and `.skills-lock.json` before deleting.
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+ - `--all` removes all owned files, cleans MCP and hook registrations, clears `AGENTS.md` index block, and deletes `.skills-lock.json`. `CLAUDE.md` and `.skillsrc` are left unchanged.
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+ - Non-interactive environments without `--yes` exit 1 with a preview.
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+
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+ ### Verification: `ags verify`
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+
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+ Check installed files against `.skills-lock.json` to detect tampering, partial writes, or manual drift:
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+
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+ - `ags verify`: Checks file integrity against the lockfile.
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+ - `ags verify --strict`: In addition to file integrity, fails (exit 1) if any locked ref now resolves to a different commit (moved tag) or cannot be resolved.
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+ - `ags verify --attestation`: Verifies build-provenance attestations using the GitHub CLI (`gh`). Requires `gh` on PATH; fails if any pinned source lacks `MANIFEST.json` or fails attestation.
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+
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+ ### Policy Layer: `ags policy`
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+
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+ Prevents mistakes by cooperating agents; not a security boundary.
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+
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+ Manage and check deterministic project rules in `.ags/policy.json` (`protected_path`, `command`, `required_check`):
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+
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+ - `ags policy status [--json]`: Show policy rules in force and built-in rules (identity/secret deny-list).
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+ - `ags policy check (--path <p> | --command <cmd> | --diff) [--no-bypass] [--json]`: Evaluate a path, command executable, or git diff against active policy rules.
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+ - `ags policy validate [--fail-on-stale] [--json]`: Validate `.ags/policy.json` for schema errors, rule conflicts, and stale compiled rules.
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+ - `ags policy compile [--json]`: Scan `AGENTS.md` and `CLAUDE.md` to propose candidate rules into `.ags/policy-candidates.json`. Compiled rules can only warn or rewrite.
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+ - `ags policy adopt <ids...> [--json]`: Activate candidate rules into `.ags/policy.json` after conflict validation.
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+ Set `AGS_POLICY_BYPASS=1` (or `AGS_POLICY_BYPASS=true`) to turn policy decisions into allow while reporting waived rules.
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  ---
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  ## Configuration
@@ -54,6 +102,8 @@ The `.skillsrc` file controls everything:
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  ```yaml
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  registry: https://github.com/HoangNguyen0403/agent-skills-standard
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  agents: [cursor, copilot, claude]
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+ workflows_ref: workflows-v1.0.0 # pinned workflows release tag
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+ specialists_ref: specialists-v2.0.0 # pinned specialists release tag
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  skills:
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  react:
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  ref: react-v1.3.1
@@ -65,6 +115,8 @@ skills:
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  custom_overrides: ['common-tdd'] # protect your local edits
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  ```
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+ A project without pins gets `workflows_ref` and `specialists_ref` written once to `.skillsrc` on first sync from the registry's latest releases (`--dry-run` never writes them). If the registry does not publish releases, sync falls back to the default branch with a warning.
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+
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  ---
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  ## What Gets Generated
@@ -104,12 +156,59 @@ ags mcp uninstall --from project # remove our entry; siblings preserved
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  The CLI **never** modifies user-home files (`~/.cursor/mcp.json`, `~/.gemini/settings.json`, etc.) unless you explicitly choose `scope: user` AND confirm each write. See [`mcp/README.md`](../mcp/README.md) for full details and [`mcp/ARCHITECTURE.md`](../mcp/ARCHITECTURE.md) for the threat model.
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+ ## Installation Health: `ags doctor`
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+
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+ Run read-only health checks across seven subsystems: configuration (`.skillsrc`), detected/configured agents, skill-content lockfile (`.skills-lock.json`), MCP server registrations, pre-edit hooks, legacy folder migrations, and CLI version.
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+
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+ ```bash
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+ ags doctor # Human-readable health check report
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+ ags doctor --offline # Skip the network-backed CLI version check
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+ ags doctor --json # Emit a versioned JSON report (schema_version: 1, kind: 'doctor.report')
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+ ags doctor --exit-on-fail # Exit with code 1 when any check fails (default exit code is 0)
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+ ags doctor --fix # Apply available safe repairs interactively (prompts per fix)
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+ ags doctor --fix --yes # Apply repairs non-interactively
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+ ```
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+
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+ ### JSON Envelope
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+
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+ When `--json` is supplied, `ags doctor` outputs a single JSON payload matching the `doctor.report` contract:
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+
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+ ```json
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+ {
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+ "schema_version": 1,
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+ "kind": "doctor.report",
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+ "data": {
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+ "schema_version": 1,
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+ "checks": [
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+ {
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+ "name": "config",
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+ "status": "ok",
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+ "evidence": ".skillsrc parsed",
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+ "fixable": false
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+ }
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+ ],
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+ "summary": {
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+ "total": 7,
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+ "ok": 7,
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+ "warn": 0,
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+ "fail": 0,
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+ "skip": 0
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+ },
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+ "healthy": true
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+ }
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+ }
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+ ```
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+
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+ ### Exit Behavior
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+
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+ `ags doctor` always exits with code `0` by default so it never unexpectedly breaks pipelines. When `--exit-on-fail` is passed, it exits with code `1` if any check produces a `fail` status (`healthy: false`).
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  ---
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  ## Privacy & Security
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  - **Text only** — the CLI downloads Markdown and JSON files, never binaries or scripts
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- - **No telemetry** — zero data collection, no background processes
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+ - **No telemetry by default** — zero data collection unless you opt into the local usage log (see docs/FRESHNESS.md)
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  - **Transparent** — fetches from the [public registry](https://github.com/HoangNguyen0403/agent-skills-standard), nothing hidden
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  - **Override protection** — `custom_overrides` prevents the CLI from touching your local modifications
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  - **MCP consent model** — runtime configs in `$HOME` are only ever modified with explicit per-file consent