agent-skill-manager 1.17.0 → 1.20.0

package/data/skill-index/K-Dense-AI_claude-scientific-skills.json

@@ -2,8 +2,8 @@
   "repoUrl": "https://github.com/K-Dense-AI/claude-scientific-skills.git",
   "owner": "K-Dense-AI",
   "repo": "claude-scientific-skills",
-  "updatedAt": "2026-03-24T16:23:10.391Z",
-  "skillCount": 164,
+  "updatedAt": "2026-03-27T23:21:42.066Z",
+  "skillCount": 177,
   "skills": [
     {
       "name": "adaptyv",
@@ -41,6 +41,18 @@
       "relPath": "scientific-skills/alpha-vantage",
       "verified": true
     },
+    {
+      "name": "alphafold-database",
+      "description": "Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.",
+      "version": "0.0.0",
+      "license": "Unknown",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/alphafold-database",
+      "relPath": "scientific-skills/alphafold-database",
+      "verified": true
+    },
     {
       "name": "anndata",
       "description": "Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.",
@@ -437,6 +449,18 @@
       "relPath": "scientific-skills/diffdock",
       "verified": true
     },
+    {
+      "name": "dnanexus-integration",
+      "description": "DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.",
+      "version": "0.0.0",
+      "license": "Unknown",
+      "creator": "",
+      "compatibility": "Requires a DNAnexus account",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/dnanexus-integration",
+      "relPath": "scientific-skills/dnanexus-integration",
+      "verified": true
+    },
     {
       "name": "docx",
       "description": "Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word document. If the user asks for a 'report', 'memo', 'letter', 'template', or similar deliverable as a Word or .docx file, use this skill. Do NOT use for PDFs, spreadsheets, Google Docs, or general coding tasks unrelated to document generation.",
@@ -497,6 +521,18 @@
       "relPath": "scientific-skills/ensembl-database",
       "verified": true
     },
+    {
+      "name": "esm",
+      "description": "Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.",
+      "version": "0.0.0",
+      "license": "MIT license",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/esm",
+      "relPath": "scientific-skills/esm",
+      "verified": true
+    },
     {
       "name": "etetoolkit",
       "description": "Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.",
@@ -581,6 +617,30 @@
       "relPath": "scientific-skills/gene-database",
       "verified": true
     },
+    {
+      "name": "generate-image",
+      "description": "Generate or edit images using AI models (FLUX, Nano Banana 2). Use for general-purpose image generation including photos, illustrations, artwork, visual assets, concept art, and any image that is not a technical diagram or schematic. For flowcharts, circuits, pathways, and technical diagrams, use the scientific-schematics skill instead.",
+      "version": "0.0.0",
+      "license": "MIT license",
+      "creator": "",
+      "compatibility": "Requires an OpenRouter API key",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/generate-image",
+      "relPath": "scientific-skills/generate-image",
+      "verified": true
+    },
+    {
+      "name": "geniml",
+      "description": "This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.",
+      "version": "0.0.0",
+      "license": "BSD-2-Clause license",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/geniml",
+      "relPath": "scientific-skills/geniml",
+      "verified": true
+    },
     {
       "name": "geo-database",
       "description": "Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.",
@@ -617,6 +677,18 @@
       "relPath": "scientific-skills/geopandas",
       "verified": true
     },
+    {
+      "name": "get-available-resources",
+      "description": "This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that inform computational approach decisions such as whether to use parallel processing (joblib, multiprocessing), out-of-core computing (Dask, Zarr), GPU acceleration (PyTorch, JAX), or memory-efficient strategies. Use this skill before running analyses, training models, processing large datasets, or any task where resource constraints matter.",
+      "version": "0.0.0",
+      "license": "MIT license",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/get-available-resources",
+      "relPath": "scientific-skills/get-available-resources",
+      "verified": true
+    },
     {
       "name": "gget",
       "description": "Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.",
@@ -761,6 +833,18 @@
       "relPath": "scientific-skills/hypothesis-generation",
       "verified": true
     },
+    {
+      "name": "imaging-data-commons",
+      "description": "Query and download public cancer imaging data from NCI Imaging Data Commons using idc-index. Use for accessing large-scale radiology (CT, MR, PET) and pathology datasets for AI training or research. No authentication required. Query by metadata, visualize in browser, check licenses.",
+      "version": "1.4.0",
+      "license": "This skill is provided under the MIT License. IDC data itself has individual licensing (mostly CC-BY, some CC-NC) that must be respected when using the data.",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/imaging-data-commons",
+      "relPath": "scientific-skills/imaging-data-commons",
+      "verified": true
+    },
     {
       "name": "infographics",
       "description": "Create professional infographics using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Integrates research-lookup and web search for accurate data. Supports 10 infographic types, 8 industry styles, and colorblind-safe palettes.",
@@ -1001,6 +1085,18 @@
       "relPath": "scientific-skills/molecular-dynamics",
       "verified": true
     },
+    {
+      "name": "molfeat",
+      "description": "Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert SMILES to features, for QSAR and molecular ML.",
+      "version": "0.0.0",
+      "license": "Apache-2.0 license",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/molfeat",
+      "relPath": "scientific-skills/molfeat",
+      "verified": true
+    },
     {
       "name": "monarch-database",
       "description": "Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species. Integrates OMIM, ORPHANET, HPO, ClinVar, and model organism databases. Use for rare disease gene discovery, phenotype-to-gene mapping, cross-species disease modeling, and HPO term lookup.",
@@ -1218,15 +1314,15 @@
       "verified": true
     },
     {
-      "name": "planning-with-files",
-      "description": "Implements Manus-style file-based planning to organize and track progress on complex tasks. Creates task_plan.md, findings.md, and progress.md. Use when asked to plan out, break down, or organize a multi-step project, research task, or any work requiring >5 tool calls. Supports automatic session recovery after /clear.",
-      "version": "2.26.1",
-      "license": "",
+      "name": "phylogenetics",
+      "description": "Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.",
+      "version": "0.0.0",
+      "license": "Unknown",
       "creator": "",
       "compatibility": "",
-      "allowedTools": ["Read", "Write", "Edit", "Bash", "Glob", "Grep"],
-      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/planning-with-files",
-      "relPath": "scientific-skills/planning-with-files",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/phylogenetics",
+      "relPath": "scientific-skills/phylogenetics",
       "verified": true
     },
     {
@@ -1457,6 +1553,18 @@
       "relPath": "scientific-skills/pysam",
       "verified": true
     },
+    {
+      "name": "pytdc",
+      "description": "Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.",
+      "version": "0.0.0",
+      "license": "MIT license",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/pytdc",
+      "relPath": "scientific-skills/pytdc",
+      "verified": true
+    },
     {
       "name": "pytorch-lightning",
       "description": "Deep learning framework (PyTorch Lightning). Organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, implement data pipelines, callbacks, logging (W&B, TensorBoard), distributed training (DDP, FSDP, DeepSpeed), for scalable neural network training.",
@@ -1505,6 +1613,18 @@
       "relPath": "scientific-skills/qutip",
       "verified": true
     },
+    {
+      "name": "rdkit",
+      "description": "Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.",
+      "version": "0.0.0",
+      "license": "BSD-3-Clause license",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/rdkit",
+      "relPath": "scientific-skills/rdkit",
+      "verified": true
+    },
     {
       "name": "reactome-database",
       "description": "Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.",
@@ -1781,6 +1901,18 @@
       "relPath": "scientific-skills/statsmodels",
       "verified": true
     },
+    {
+      "name": "string-database",
+      "description": "Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.",
+      "version": "0.0.0",
+      "license": "Unknown",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/string-database",
+      "relPath": "scientific-skills/string-database",
+      "verified": true
+    },
     {
       "name": "sympy",
       "description": "Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives, integrals, limits), manipulating algebraic expressions, working with matrices symbolically, physics calculations, number theory problems, geometry computations, and generating executable code from mathematical expressions. Apply this skill when the user needs exact symbolic results rather than numerical approximations, or when working with mathematical formulas that contain variables and parameters.",
@@ -1817,6 +1949,18 @@
       "relPath": "scientific-skills/timesfm-forecasting",
       "verified": true
     },
+    {
+      "name": "torch-geometric",
+      "description": "Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, molecular property prediction, for geometric deep learning.",
+      "version": "0.0.0",
+      "license": "MIT license",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/torch-geometric",
+      "relPath": "scientific-skills/torch-geometric",
+      "verified": true
+    },
     {
       "name": "torchdrug",
       "description": "PyTorch-native graph neural networks for molecules and proteins. Use when building custom GNN architectures for drug discovery, protein modeling, or knowledge graph reasoning. Best for custom model development, protein property prediction, retrosynthesis. For pre-trained models and diverse featurizers use deepchem; for benchmark datasets use pytdc.",
@@ -1972,6 +2116,18 @@
       "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/zarr-python",
       "relPath": "scientific-skills/zarr-python",
       "verified": true
+    },
+    {
+      "name": "zinc-database",
+      "description": "Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.",
+      "version": "0.0.0",
+      "license": "Unknown",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:K-Dense-AI/claude-scientific-skills:scientific-skills/zinc-database",
+      "relPath": "scientific-skills/zinc-database",
+      "verified": true
     }
   ]
 }

package/data/skill-index/Leonxlnx_taste-skill.json

@@ -2,7 +2,7 @@
   "repoUrl": "https://github.com/Leonxlnx/taste-skill.git",
   "owner": "Leonxlnx",
   "repo": "taste-skill",
-  "updatedAt": "2026-03-24T16:22:54.518Z",
+  "updatedAt": "2026-03-27T23:21:26.273Z",
   "skillCount": 7,
   "skills": [
     {

package/data/skill-index/Master-cai_Research-Paper-Writing-Skills.json

@@ -2,7 +2,7 @@
   "repoUrl": "https://github.com/Master-cai/Research-Paper-Writing-Skills.git",
   "owner": "Master-cai",
   "repo": "Research-Paper-Writing-Skills",
-  "updatedAt": "2026-03-24T16:23:02.540Z",
+  "updatedAt": "2026-03-27T23:21:34.384Z",
   "skillCount": 1,
   "skills": [
     {

package/data/skill-index/MiniMax-AI_skills.json

@@ -2,8 +2,8 @@
   "repoUrl": "https://github.com/MiniMax-AI/skills.git",
   "owner": "MiniMax-AI",
   "repo": "skills",
-  "updatedAt": "2026-03-24T16:22:57.475Z",
-  "skillCount": 11,
+  "updatedAt": "2026-03-27T23:21:29.064Z",
+  "skillCount": 15,
   "skills": [
     {
       "name": "android-native-dev",
@@ -17,6 +17,18 @@
       "relPath": "skills/android-native-dev",
       "verified": true
     },
+    {
+      "name": "flutter-dev",
+      "description": "Flutter cross-platform development guide covering widget patterns, Riverpod/Bloc state management, GoRouter navigation, performance optimization, and platform-specific implementations. Includes const optimization, responsive layouts, testing strategies, and DevTools profiling. Use when: building Flutter apps, implementing state management (Riverpod/Bloc), setting up GoRouter navigation, creating custom widgets, optimizing performance, writing widget tests, cross-platform development.",
+      "version": "1.0.0",
+      "license": "MIT",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:MiniMax-AI/skills:skills/flutter-dev",
+      "relPath": "skills/flutter-dev",
+      "verified": true
+    },
     {
       "name": "frontend-dev",
       "description": "Full-stack frontend development combining premium UI design, cinematic animations, AI-generated media assets, persuasive copywriting, and visual art. Builds complete, visually striking web pages with real media, advanced motion, and compelling copy. Use when: building landing pages, marketing sites, product pages, dashboards, generating media assets (image/video/audio/music), writing conversion copy, creating generative art, or implementing cinematic scroll animations.",
@@ -77,6 +89,18 @@
       "relPath": "skills/minimax-docx",
       "verified": true
     },
+    {
+      "name": "minimax-multimodal-toolkit",
+      "description": "MiniMax multimodal model skill — use MiniMax Multi-Modal models for speech, music, video, and image. Create voice, music, video, and images with MiniMax AI: TTS (text-to-speech, voice cloning, voice design, multi-segment), music (songs, instrumentals), video (text-to-video, image-to-video, start-end frame, subject reference, templates, long-form multi-scene), image (text-to-image, image-to-image with character reference), and media processing (convert, concat, trim, extract). Use when the user mentions MiniMax, multimodal generation, or wants speech/music/video/image AI, MiniMax APIs, or FFmpeg workflows alongside MiniMax outputs.",
+      "version": "1.0",
+      "license": "MIT",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:MiniMax-AI/skills:skills/minimax-multimodal-toolkit",
+      "relPath": "skills/minimax-multimodal-toolkit",
+      "verified": true
+    },
     {
       "name": "minimax-pdf",
       "description": "Use this skill when visual quality and design identity matter for a PDF. CREATE (generate from scratch): \"make a PDF\", \"generate a report\", \"write a proposal\", \"create a resume\", \"beautiful PDF\", \"professional document\", \"cover page\", \"polished PDF\", \"client-ready document\". FILL (complete form fields): \"fill in the form\", \"fill out this PDF\", \"complete the form fields\", \"write values into PDF\", \"what fields does this PDF have\". REFORMAT (apply design to an existing doc): \"reformat this document\", \"apply our style\", \"convert this Markdown/text to PDF\", \"make this doc look good\", \"re-style this PDF\". This skill uses a token-based design system: color, typography, and spacing are derived from the document type and flow through every page. The output is print-ready. Prefer this skill when appearance matters, not just when any PDF output is needed.",
@@ -125,6 +149,18 @@
       "relPath": ".claude/skills/pr-review",
       "verified": true
     },
+    {
+      "name": "react-native-dev",
+      "description": "React Native and Expo development guide covering components, styling, animations, navigation, state management, forms, networking, performance optimization, testing, native capabilities, and engineering (project structure, deployment, SDK upgrades, CI/CD). Use when: building React Native or Expo apps, implementing animations or native UI, managing state, fetching data, writing tests, optimizing performance, deploying to App Store/Play Store, setting up CI/CD, upgrading Expo SDK, or configuring Tailwind/NativeWind.",
+      "version": "1.0.0",
+      "license": "MIT",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:MiniMax-AI/skills:skills/react-native-dev",
+      "relPath": "skills/react-native-dev",
+      "verified": true
+    },
     {
       "name": "shader-dev",
       "description": "Comprehensive GLSL shader techniques for creating stunning visual effects — ray marching, SDF modeling, fluid simulation, particle systems, procedural generation, lighting, post-processing, and more.",
@@ -136,6 +172,18 @@
       "installUrl": "github:MiniMax-AI/skills:skills/shader-dev",
       "relPath": "skills/shader-dev",
       "verified": true
+    },
+    {
+      "name": "vision-analysis",
+      "description": "Analyze, describe, and extract information from images using the MiniMax vision MCP tool. Use when: user shares an image file path or URL (any message containing .jpg, .jpeg, .png, .gif, .webp, .bmp, or .svg file extension) or uses any of these words/phrases near an image: \"analyze\", \"analyse\", \"describe\", \"explain\", \"understand\", \"look at\", \"review\", \"extract text\", \"OCR\", \"what is in\", \"what's in\", \"read this image\", \"see this image\", \"tell me about\", \"explain this\", \"interpret this\", in connection with an image, screenshot, diagram, chart, mockup, wireframe, or photo. Also triggers for: UI mockup review, wireframe analysis, design critique, data extraction from charts, object detection, person/animal/activity identification. Triggers: any message with an image file extension (jpg, jpeg, png, gif, webp, bmp, svg), or any request to analyze/describ/understand/review/extract text from an image, screenshot, diagram, chart, photo, mockup, or wireframe.",
+      "version": "1.0",
+      "license": "MIT",
+      "creator": "",
+      "compatibility": "",
+      "allowedTools": [],
+      "installUrl": "github:MiniMax-AI/skills:skills/vision-analysis",
+      "relPath": "skills/vision-analysis",
+      "verified": true
     }
   ]
 }

package/data/skill-index/affaan-m_everything-claude-code.json

@@ -2,7 +2,7 @@
   "repoUrl": "https://github.com/affaan-m/everything-claude-code.git",
   "owner": "affaan-m",
   "repo": "everything-claude-code",
-  "updatedAt": "2026-03-24T16:22:45.831Z",
+  "updatedAt": "2026-03-27T23:21:17.477Z",
   "skillCount": 183,
   "skills": [
     {