agent-security-scanner-mcp 4.0.1 → 4.1.1

package/README.md

@@ -63,6 +63,8 @@ Continue reading below for full version documentation →
 
 ---
 
+> **New in v4.1.0:** SBOM generation and dependency vulnerability analysis — generates CycloneDX v1.5 SBOMs, scans against OSV.dev for CVEs, detects hallucinated packages, compares baselines, and generates HTML audit reports. Supports 8 lock file formats and 7 manifest formats across npm, Python, Go, Rust, Ruby, and Java ecosystems. [See SBOM Tools](#-sbom--supply-chain-analysis-new-in-v410).
+>
 > **New in v4.0.0:** LLM-powered semantic code review agent with intent profiling — understands what your project is supposed to do and flags patterns that violate that intent. Same `eval()` call = safe in a build tool, dangerous in an e-commerce app. Supports Claude CLI (no API key needed!), Anthropic, and OpenAI. [See code-review-agent](#-llm-powered-code-review-agent-new-in-v400).
 >
 > **New in v3.11.0:** ClawHub ecosystem security scanning — scanned all 16,532 ClawHub skills and found 46% have critical vulnerabilities. New `scan-clawhub` CLI for batch scanning, 40+ prompt injection patterns, jailbreak detection (DAN mode, dev mode), data exfiltration checks. [See ClawHub Security Dashboard](https://www.proof-layer.com/dashboard).
@@ -87,6 +89,11 @@ Continue reading below for full version documentation →
 | `scan_skill` | Deep security scan of an OpenClaw skill: prompt injection, AST+taint code analysis, ClawHavoc malware signatures, supply chain, rug pull. Returns A-F grade | Before installing any OpenClaw skill |
 | `scanner_health` | Check plugin health: engine status, daemon status, package data availability | Diagnostics and plugin status |
 | `list_security_rules` | List available security rules and fix templates | To check rule coverage for a language |
+| `sbom_generate` | Generate CycloneDX v1.5 SBOM for a project (8 lock file formats, 7 manifest formats) | Before releases, for compliance audits |
+| `sbom_scan_vulnerabilities` | Cross-reference SBOM against OSV.dev for CVEs with severity filtering | After generating SBOM, for security audits |
+| `sbom_check_hallucinations` | Verify all SBOM packages exist in official registries | Before deploying, to catch AI-invented packages |
+| `sbom_diff` | Compare current SBOM against baseline, detect added/removed/changed packages | In CI/CD to track dependency drift |
+| `sbom_export_report` | Generate HTML or JSON audit report from SBOM with vulnerability data | For PCI-DSS compliance, security reviews |
 
 ## Quick Start
 
@@ -243,6 +250,180 @@ npx cr-agent analyze ./path/to/project -f sarif -p claude-cli
 
 ---
 
+## 📦 SBOM / Supply Chain Analysis (New in v4.1.0)
+
+Generate Software Bill of Materials (SBOM) and analyze dependencies for vulnerabilities across your entire supply chain.
+
+### Quick Start
+
+```bash
+# Generate SBOM for current project
+npx agent-security-scanner-mcp sbom-generate .
+
+# Scan for vulnerabilities against OSV.dev
+npx agent-security-scanner-mcp sbom-vulnerabilities .
+
+# Check for hallucinated packages
+npx agent-security-scanner-mcp sbom-check-hallucinations .
+
+# Compare against baseline (CI/CD)
+npx agent-security-scanner-mcp sbom-diff . --save-baseline  # First run
+npx agent-security-scanner-mcp sbom-diff .                  # Subsequent runs
+
+# Generate HTML audit report
+npx agent-security-scanner-mcp sbom-report . --format html
+```
+
+### Supported Ecosystems
+
+| Ecosystem | Lock Files | Manifests | CLI Fallback |
+|-----------|------------|-----------|--------------|
+| **npm** | package-lock.json (v2/v3), yarn.lock (classic/berry), pnpm-lock.yaml | package.json | `npm ls`, `pnpm list` |
+| **Python** | poetry.lock, Pipfile.lock | requirements.txt, pyproject.toml | — |
+| **Go** | go.sum | go.mod | `go list` |
+| **Rust** | Cargo.lock | — | `cargo metadata` |
+| **Ruby** | Gemfile.lock | Gemfile | — |
+| **Java** | — | pom.xml, build.gradle | `mvn dependency:tree` |
+
+### SBOM Tools
+
+#### `sbom_generate`
+
+Generate a CycloneDX v1.5 SBOM for a project. Discovers all dependencies (direct + transitive) from lock files and manifests.
+
+```json
+// Input
+{ "directory_path": "./my-project", "verbosity": "compact" }
+
+// Output
+{
+  "total_components": 212,
+  "direct": 20,
+  "dev": 91,
+  "ecosystems": ["npm", "pypi"],
+  "components": [
+    { "name": "express", "version": "4.18.2", "ecosystem": "npm", "isDirect": true }
+  ]
+}
+```
+
+#### `sbom_scan_vulnerabilities`
+
+Cross-reference SBOM components against OSV.dev vulnerability database. Returns CVE IDs, CVSS scores, severity, and fix recommendations.
+
+```json
+// Input
+{ "directory_path": "./my-project", "severity_threshold": "medium" }
+
+// Output
+{
+  "total_vulnerabilities": 3,
+  "by_severity": { "critical": 1, "high": 1, "medium": 1 },
+  "vulnerabilities": [
+    {
+      "id": "GHSA-xxxx-yyyy-zzzz",
+      "package": "lodash",
+      "severity": "critical",
+      "cvss": 9.8,
+      "fixed_version": "4.17.21"
+    }
+  ]
+}
+```
+
+#### `sbom_check_hallucinations`
+
+Check all packages in an SBOM against official registries to detect AI-invented package names.
+
+```json
+// Input
+{ "directory_path": "./my-project" }
+
+// Output
+{
+  "total_checked": 212,
+  "hallucinated_count": 1,
+  "unsupported_ecosystems": ["go", "java"],
+  "hallucinated": [
+    { "name": "react-async-utils-helper", "ecosystem": "npm" }
+  ]
+}
+```
+
+#### `sbom_diff`
+
+Compare current project SBOM against a stored baseline. Detects added, removed, and version-changed packages.
+
+```json
+// Input (first run)
+{ "directory_path": "./my-project", "save_baseline": true }
+
+// Output
+{ "message": "Baseline saved to .scanner/sbom-baseline.json" }
+
+// Input (subsequent runs)
+{ "directory_path": "./my-project" }
+
+// Output
+{
+  "added": [{ "name": "lodash", "version": "4.17.21", "ecosystem": "npm" }],
+  "removed": [],
+  "changed": [{ "name": "express", "from": "4.17.1", "to": "4.18.2" }]
+}
+```
+
+#### `sbom_export_report`
+
+Generate an HTML or JSON audit report from SBOM data, optionally enriched with vulnerability scan results.
+
+```json
+// Input
+{
+  "directory_path": "./my-project",
+  "format": "html",
+  "include_vulnerabilities": true,
+  "output_path": "./sbom-report.html"
+}
+
+// Output
+{
+  "report_path": "./sbom-report.html",
+  "components": 212,
+  "vulnerabilities": 3
+}
+```
+
+### CLI Commands
+
+```bash
+# Generate SBOM
+sbom-generate <dir> [--save] [--output <path>] [--verbosity minimal|compact|full]
+
+# Scan vulnerabilities
+sbom-vulnerabilities <dir> [--sbom-path <path>] [--verbosity minimal|compact|full]
+
+# Check hallucinations
+sbom-check-hallucinations <dir> [--verbosity minimal|compact|full]
+
+# Compare baseline
+sbom-diff <dir> [--save-baseline] [--baseline-path <path>] [--verbosity minimal|compact|full]
+
+# Generate report
+sbom-report <dir> [--format html|json] [--output <path>] [--no-vulnerabilities]
+```
+
+### Features
+
+- **CycloneDX v1.5 JSON** — Industry-standard SBOM format
+- **OSV.dev Integration** — Real-time vulnerability data with 24-hour local cache
+- **Multi-Ecosystem** — Single scan discovers dependencies across all package managers
+- **Direct vs Transitive** — Distinguishes direct dependencies from transitive ones
+- **Dev Dependencies** — Optionally include/exclude development dependencies
+- **Baseline Comparison** — Track dependency drift over time
+- **HTML Reports** — Visual dashboard with severity charts for compliance audits
+
+---
+
 ## Tool Reference
 
 ### `scan_security`
@@ -1158,7 +1339,7 @@ AI coding agents introduce attack surfaces that traditional security tools weren
 |----------|-------|
 | **Transport** | stdio |
 | **Package** | `agent-security-scanner-mcp` (npm) |
-| **Tools** | 12 |
+| **Tools** | 17 |
 | **Languages** | 12 |
 | **Ecosystems** | 7 |
 | **Auth** | None required |
@@ -1240,6 +1421,22 @@ All MCP tools support a `verbosity` parameter to minimize context window consump
 
 ## Changelog
 
+### v4.1.0 (2026-03-27) - SBOM Generation & Vulnerability Analysis
+
+**🚀 New Feature: Software Bill of Materials (SBOM)**
+
+- **5 New MCP Tools:** `sbom_generate`, `sbom_scan_vulnerabilities`, `sbom_check_hallucinations`, `sbom_diff`, `sbom_export_report`
+- **CycloneDX v1.5:** Industry-standard SBOM format output
+- **8 Lock File Parsers:** package-lock.json (v2/v3), yarn.lock (classic/berry), pnpm-lock.yaml, poetry.lock, Pipfile.lock, Cargo.lock, go.sum, Gemfile.lock
+- **7 Manifest Parsers:** package.json, requirements.txt, pyproject.toml, go.mod, Gemfile, pom.xml, build.gradle
+- **CLI Fallbacks:** npm ls, pnpm list, cargo metadata, go list, mvn dependency:tree
+- **OSV.dev Integration:** Real-time vulnerability database with 24-hour local cache
+- **Baseline Comparison:** Track dependency drift with save/compare workflow
+- **HTML Reports:** Visual dashboard with severity charts for compliance
+- **86 New Tests:** Comprehensive coverage across all SBOM features
+
+---
+
 ### v4.0.0 (2026-03-21) - LLM-Powered Code Review Agent
 
 **🚀 Major Release: LLM-Powered Semantic Code Review**

package/code-review-agent/README.md

@@ -23,14 +23,20 @@ npm run build
 ### Analyze a project
 
 ```bash
-# Text output (default)
+# Text output (default — review mode)
 npx tsx bin/cr-agent.ts analyze ./path/to/project
 
+# Security-only mode — focused on exploitable vulnerabilities
+npx tsx bin/cr-agent.ts analyze ./path/to/project --mode security
+
+# Shorthand for security mode
+npx tsx bin/cr-agent.ts analyze ./path/to/project --security-only
+
 # JSON output
 npx tsx bin/cr-agent.ts analyze ./path/to/project --format json
 
-# SARIF output
-npx tsx bin/cr-agent.ts analyze ./path/to/project --format sarif
+# SARIF output (recommended with --mode security for CI)
+npx tsx bin/cr-agent.ts analyze ./path/to/project --format sarif --mode security
 
 # Custom confidence threshold
 npx tsx bin/cr-agent.ts analyze ./path/to/project --confidence 0.8
@@ -39,6 +45,17 @@ npx tsx bin/cr-agent.ts analyze ./path/to/project --confidence 0.8
 npx tsx bin/cr-agent.ts analyze ./path/to/project --provider openai
 ```
 
+### Analysis modes
+
+| Mode | Description |
+|------|-------------|
+| `review` (default) | Broad semantic review: logic bugs, security, race conditions, null refs, boundary issues, unhandled exceptions |
+| `security` | Focused security scanner: exploitable vulnerabilities only, sink-localized findings, carrier suppression, CWE mapping |
+
+**Review mode** is best for human code review workflows where you want to catch all types of real bugs.
+
+**Security mode** is best for CI pipelines, SARIF integrations, and security-focused audits where you want clean, actionable vulnerability reports without generic code quality noise.
+
 ### View intent profile
 
 ```bash
@@ -64,6 +81,7 @@ Or create a `.cr-agent.json` in your project root:
 
 ```json
 {
+  "mode": "review",
   "provider": "anthropic",
   "model": "claude-sonnet-4-20250514",
   "triageModel": "claude-haiku-4-5-20251001",
@@ -78,6 +96,8 @@ Or create a `.cr-agent.json` in your project root:
 
 | Flag | Description | Default |
 |------|-------------|---------|
+| `--mode` | Analysis mode (`review` or `security`) | `review` |
+| `--security-only` | Shorthand for `--mode security` | — |
 | `-p, --provider` | LLM provider (`anthropic` or `openai`) | `anthropic` |
 | `-m, --model` | Analysis model | `claude-sonnet-4-20250514` / `gpt-4o` |
 | `--triage-model` | Triage model | `claude-haiku-4-5-20251001` / `gpt-4o-mini` |
@@ -92,7 +112,8 @@ Or create a `.cr-agent.json` in your project root:
 ```
 Pipeline: discover files → build dependency graph → profile intent
         → triage (parallel, cheap model) → analyze (parallel, analysis model)
-        → dedup → filter by confidence → sort by severity → output
+        → dedup → mode-aware post-filter → carrier suppression (security mode)
+        → filter by confidence → sort by severity → output
 ```
 
 ### Components

package/code-review-agent/bin/cr-agent.ts

@@ -13,7 +13,7 @@ import { ModelRouter } from '../src/llm/router.js';
 import { DependencyGraphBuilder } from '../src/graph/dependency.js';
 import { buildProjectContext } from '../src/context/project.js';
 import { loadConfig, resolveOptions } from '../src/types/config.js';
-import type { AnalysisOptions } from '../src/types/config.js';
+import type { AnalysisOptions, AnalysisMode } from '../src/types/config.js';
 import type { AnalysisResult, Finding } from '../src/index.js';
 
 const program = new Command();
@@ -27,6 +27,8 @@ program
   .command('analyze')
   .description('Analyze a file or directory for bugs and vulnerabilities')
   .argument('<target>', 'File or directory to analyze')
+  .option('--mode <mode>', 'Analysis mode (review|security)')
+  .option('--security-only', 'Shorthand for --mode security')
   .option('-p, --provider <provider>', 'LLM provider (anthropic|openai|claude-cli)')
   .option('-m, --model <model>', 'Model to use for analysis')
   .option('--triage-model <model>', 'Model to use for triage')
@@ -43,8 +45,12 @@ program
         ? resolvedTarget
         : findProjectRoot(resolvedTarget);
       const config = loadConfig(targetProjectRoot);
+      const mode: AnalysisMode | undefined = flags.securityOnly
+        ? 'security'
+        : (flags.mode as AnalysisMode | undefined);
       const options = resolveOptions(
         {
+          mode,
           provider: flags.provider as AnalysisOptions['provider'] | undefined,
           model: flags.model as string | undefined,
           triageModel: flags.triageModel as string | undefined,

package/code-review-agent/dist/bin/cr-agent.js

@@ -20,6 +20,8 @@ program
     .command('analyze')
     .description('Analyze a file or directory for bugs and vulnerabilities')
     .argument('<target>', 'File or directory to analyze')
+    .option('--mode <mode>', 'Analysis mode (review|security)')
+    .option('--security-only', 'Shorthand for --mode security')
     .option('-p, --provider <provider>', 'LLM provider (anthropic|openai|claude-cli)')
     .option('-m, --model <model>', 'Model to use for analysis')
     .option('--triage-model <model>', 'Model to use for triage')
@@ -36,7 +38,11 @@ program
             ? resolvedTarget
             : findProjectRoot(resolvedTarget);
         const config = loadConfig(targetProjectRoot);
+        const mode = flags.securityOnly
+            ? 'security'
+            : flags.mode;
         const options = resolveOptions({
+            mode,
             provider: flags.provider,
             model: flags.model,
             triageModel: flags.triageModel,

package/code-review-agent/dist/bin/cr-agent.js.map

@@ -1 +1 @@
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package/code-review-agent/dist/src/analyzer/engine.d.ts

@@ -9,6 +9,11 @@ export declare class AnalysisEngine {
     analyze(targetPath: string): Promise<AnalysisResult>;
     private discoverFiles;
     private dedup;
+    /**
+     * Generate a dedup signature that's more precise than just category.
+     * Priority: CWE (most specific) > normalized title > category fallback.
+     */
+    private dedupSignature;
     private mergeOverlapping;
     private countBySeverity;
     private runParallel;

package/code-review-agent/dist/src/analyzer/engine.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"engine.d.ts","sourceRoot":"","sources":["../../../src/analyzer/engine.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EACV,cAAc,EAGf,MAAM,sBAAsB,CAAC;AAE9B,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AAuB1D,MAAM,MAAM,gBAAgB,GAAG,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,KAAK,IAAI,CAAC;AAEvE,qBAAa,cAAc;IACzB,OAAO,CAAC,OAAO,CAAkB;IACjC,OAAO,CAAC,MAAM,CAAc;IAC5B,OAAO,CAAC,UAAU,CAAmB;gBAEzB,OAAO,EAAE,eAAe,EAAE,UAAU,CAAC,EAAE,gBAAgB;IAM7D,OAAO,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,CAAC;IAyM1D,OAAO,CAAC,aAAa;IAsCrB,OAAO,CAAC,KAAK;IAoBb,OAAO,CAAC,gBAAgB;IAuCxB,OAAO,CAAC,eAAe;YAQT,WAAW;CAuB1B"}
+{"version":3,"file":"engine.d.ts","sourceRoot":"","sources":["../../../src/analyzer/engine.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EACV,cAAc,EAGf,MAAM,sBAAsB,CAAC;AAE9B,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAC;AAwB1D,MAAM,MAAM,gBAAgB,GAAG,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,KAAK,IAAI,CAAC;AAEvE,qBAAa,cAAc;IACzB,OAAO,CAAC,OAAO,CAAkB;IACjC,OAAO,CAAC,MAAM,CAAc;IAC5B,OAAO,CAAC,UAAU,CAAmB;gBAEzB,OAAO,EAAE,eAAe,EAAE,UAAU,CAAC,EAAE,gBAAgB;IAM7D,OAAO,CAAC,UAAU,EAAE,MAAM,GAAG,OAAO,CAAC,cAAc,CAAC;IAoN1D,OAAO,CAAC,aAAa;IAsCrB,OAAO,CAAC,KAAK;IAoBb;;;OAGG;IACH,OAAO,CAAC,cAAc;IAiBtB,OAAO,CAAC,gBAAgB;IAuCxB,OAAO,CAAC,eAAe;YAQT,WAAW;CAwB1B"}

package/code-review-agent/dist/src/analyzer/engine.js

@@ -6,6 +6,7 @@ import { SemanticAnalyzer } from './semantic.js';
 import { buildProjectContext } from '../context/project.js';
 import { buildFileContext } from '../context/file.js';
 import { DependencyGraphBuilder } from '../graph/dependency.js';
+import { postFilterFindings, suppressCarrierFindings } from './postprocess.js';
 const CODE_EXTENSIONS = new Set([
     '.js', '.mjs', '.cjs', '.jsx',
     '.ts', '.tsx',
@@ -64,7 +65,7 @@ export class AnalysisEngine {
         const graph = graphBuilder.build(targetFiles.map((f) => path.relative(projectRoot, f)));
         this.onProgress('graph', `Graph: ${graph.nodes.size} node(s)`);
         // Create analyzer
-        const analyzer = new SemanticAnalyzer(this.router.getAnalysisProvider(), this.router.getTriageProvider());
+        const analyzer = new SemanticAnalyzer(this.router.getAnalysisProvider(), this.router.getTriageProvider(), this.options.mode, projectRoot, graph);
         // Triage files in parallel
         this.onProgress('triage', `Triaging ${targetFiles.length} file(s)...`);
         let triageCount = 0;
@@ -153,6 +154,13 @@ export class AnalysisEngine {
         // Dedup
         this.onProgress('finalize', `Deduplicating ${allFindings.length} raw finding(s)`);
         allFindings = this.dedup(allFindings);
+        // Mode-aware post-filtering
+        const beforePostFilter = allFindings.length;
+        allFindings = postFilterFindings(allFindings, this.options.mode);
+        if (this.options.mode === 'security') {
+            allFindings = suppressCarrierFindings(allFindings);
+            this.onProgress('finalize', `Security filter: ${beforePostFilter} → ${allFindings.length}`);
+        }
         // Filter by confidence
         const beforeFilter = allFindings.length;
         allFindings = allFindings.filter((f) => f.confidence >= this.options.confidenceThreshold);
@@ -220,21 +228,39 @@ export class AnalysisEngine {
         return files;
     }
     dedup(findings) {
+        // Phase 1: group by file + rich signature (CWE > normalized title > category)
         const groups = new Map();
         for (const finding of findings) {
-            const key = `${finding.location.file}:${finding.category}`;
+            const key = `${finding.location.file}:${this.dedupSignature(finding)}`;
             const group = groups.get(key) ?? [];
             group.push(finding);
             groups.set(key, group);
         }
         const result = [];
         for (const group of groups.values()) {
-            // Merge overlapping line ranges, keep highest confidence
             const merged = this.mergeOverlapping(group);
             result.push(...merged);
         }
         return result;
     }
+    /**
+     * Generate a dedup signature that's more precise than just category.
+     * Priority: CWE (most specific) > normalized title > category fallback.
+     */
+    dedupSignature(finding) {
+        if (finding.cwe) {
+            return `cwe:${finding.cwe.toLowerCase()}`;
+        }
+        // Normalize the title: lowercase, strip numbers/punctuation, collapse whitespace
+        const normalized = finding.title
+            .toLowerCase()
+            .replace(/\b(line|col|at)\s*\d+/g, '')
+            .replace(/[^a-z0-9\s]/g, '')
+            .replace(/\s+/g, ' ')
+            .trim();
+        // Use first 60 chars of normalized title + category for grouping
+        return `${finding.category}:${normalized.slice(0, 60)}`;
+    }
     mergeOverlapping(findings) {
         if (findings.length <= 1)
             return findings;
@@ -285,6 +311,7 @@ export class AnalysisEngine {
         let index = 0;
         const runNext = async () => {
             while (index < items.length) {
+                // Safe: index++ between awaits is non-concurrent in single-threaded JS
                 const currentIndex = index++;
                 results[currentIndex] = await fn(items[currentIndex]);
             }

package/code-review-agent/dist/src/analyzer/engine.js.map

@@ -1 +1 @@
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package/code-review-agent/dist/src/analyzer/postprocess.d.ts

@@ -0,0 +1,15 @@
+import type { Finding } from '../types/findings.js';
+import type { AnalysisMode } from '../types/config.js';
+/**
+ * Apply mode-aware post-filtering to findings.
+ * In review mode, returns findings unchanged.
+ * In security mode, drops non-security findings and suppresses weak evidence.
+ */
+export declare function postFilterFindings(findings: Finding[], mode: AnalysisMode): Finding[];
+/**
+ * Suppress carrier findings when a sink-localized equivalent exists.
+ * A carrier finding describes data flowing through a file, while the sink
+ * finding describes the actual dangerous operation in a downstream file.
+ */
+export declare function suppressCarrierFindings(findings: Finding[]): Finding[];
+//# sourceMappingURL=postprocess.d.ts.map

package/code-review-agent/dist/src/analyzer/postprocess.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"postprocess.d.ts","sourceRoot":"","sources":["../../../src/analyzer/postprocess.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAY,MAAM,sBAAsB,CAAC;AAC9D,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AA8CvD;;;;GAIG;AACH,wBAAgB,kBAAkB,CAChC,QAAQ,EAAE,OAAO,EAAE,EACnB,IAAI,EAAE,YAAY,GACjB,OAAO,EAAE,CAMX;AAmID;;;;GAIG;AACH,wBAAgB,uBAAuB,CAAC,QAAQ,EAAE,OAAO,EAAE,GAAG,OAAO,EAAE,CAuFtE"}