agent-relay-server 0.121.5 → 0.122.0

package/src/services/register-agent.ts

@@ -10,7 +10,7 @@
 // status broadcast, the single timeline note, the spawned-child parent-wake, and
 // the first-registration audit row.
 import { errMessage, isReservedAgentId } from "agent-relay-sdk";
-import { ValidationError, createActivityEvent, deliverableTaskIdsBySpawnRequestId, getAgent, getTaskDetail, mergeAgentMeta, readSpawnReportVerbosity, revokeSupersededRuntimeTokens, seedSpawnPromptMirror, seedSpawnReplyObligation, upsertAgent } from "../db";
+import { ValidationError, createActivityEvent, deliverableTaskIdsBySpawnRequestId, getAgent, getTaskDetail, mergeAgentMeta, readSpawnReportVerbosity, seedSpawnPromptMirror, seedSpawnReplyObligation, upsertAgent } from "../db";
 import { emitAgentStatus, emitNewMessage } from "../sse";
 import { noteAgentTimelineEvent } from "../compaction-watch";
 import { agentProviderTimelineEvent } from "../provider-timeline-event";
@@ -91,18 +91,18 @@ export function registerAgent(input: RegisterAgentInput, ctx: AuthContext): Agen
   // Registration labels are spawn defaults. Runtime /label changes remain authoritative.
   const registrationInput = existing ? { ...input } : input;
   if (existing) delete registrationInput.label;
-  const agent = upsertAgent(registrationInput);
-
   // #1051/#484 — instance takeover is where the restart-strand invariant fires now that a
-  // heartbeat lapse no longer revokes anything. When a FRESH runner process re-registers
-  // under this agent id (new instanceId → epoch bump), revoke the PRIOR instance's runtime
-  // tokens "stale": they can no longer authenticate a request directly, yet stay re-mintable
-  // via the orchestrator (#484). A same-instance reconnect keeps its instanceId, so the epoch
-  // is unchanged and the live token is left valid — the whole point of #1051 (in-band recovery
-  // after lag/relay-restart without a re-mint).
-  if (existing?.instanceId && agent.instanceId && existing.instanceId !== agent.instanceId) {
-    revokeSupersededRuntimeTokens(existing, agent);
-  }
+  // heartbeat lapse no longer revokes anything. When a FRESH runner process re-registers under
+  // this agent id, the epoch bump inside upsertAgent atomically revokes the PRIOR instance's
+  // runtime tokens "stale": refused for auth yet re-mintable via the orchestrator (#484). A
+  // same-instance reconnect keeps its instanceId, so the epoch is unchanged and the live token
+  // is left valid — the whole point of #1051 (in-band recovery after lag without a re-mint).
+  // #1057(3) — the ONLY jti spared from that revoke is server-verified: the token that
+  // authenticated THIS registration, and only when it resolves to this very agent (a
+  // same-credential instance rotation, e.g. a respawn reusing its unexpired env token).
+  // Client-sent meta.auth can no longer nominate jtis to keep.
+  const verifiedKeepJti = ctx.callerAgentId === input.id ? ctx.component?.jti : undefined;
+  const agent = upsertAgent(registrationInput, verifiedKeepJti ? { verifiedKeepJtis: [verifiedKeepJti] } : undefined);
 
   // Managed came-up-running reconcile — no-op for non-managed agents (the guard lives
   // in markManagedAgentRunning). Clears backoff, flushes the policy queue, transitions

package/src/services/send-message.ts

@@ -21,12 +21,13 @@
 //
 // OUT OF SCOPE (transport-edge, excluded from the parity facet): automatic memory injection
 // (needs request-derived context) and per-transport audit (HTTP domain row vs MCP tool-call row).
-import { canonicalHumanAgentId, isHumanAgentId, isMechanicalMessageKind, isRecord, isReservedAgentId } from "agent-relay-sdk";
+import { canonicalHumanAgentId, isHumanAgentId, isMechanicalMessageKind, isRecord, isReservedAgentId, isTurnFinalSession } from "agent-relay-sdk";
 import {
   ValidationError,
   flushDeferredLineageReport,
   getAgent,
   getMessage,
+  latestInboundMessage,
   listAgents,
   listRecentFinalResponseCaptures,
   promoteLineageCapturedResponse,
@@ -287,6 +288,14 @@ function emitSendResults(results: DbSendMessageResult[]): void {
   emitNewMessages(liveMessages);
 }
 
+// #976 — a spawned child (results-only profile) whose turn-final response Relay already promotes to
+// its spawn-parent does not also need to fire a bare ack/report via relay_send_message. Codex workers
+// do this routinely ("Noted.", "Cleared.", "Going forward I'll…", or a duplicate of the final report),
+// and each redundant message wakes the coordinator and burns the context coordinators exist to
+// protect. This ONE home suppresses such acks on BOTH transports (HTTP + MCP) and BOTH providers
+// (codex + claude): a reply-path ack collapses onto its parent; a standalone self→parent ack (no
+// replyTo — the codex relay_send_message leak) collapses onto the latest inbound it answers. A
+// genuine result (final capture, a session-final step, or non-ack body) always passes through.
 function suppressResultsOnlyAck(input: SendMessageInput): Message | null {
   if (input.kind && input.kind !== "chat" && input.kind !== "session") return null;
   const sender = getAgent(input.from);
@@ -296,21 +305,40 @@ function suppressResultsOnlyAck(input: SendMessageInput): Message | null {
   if (!isPassiveAck(input.body)) return null;
   if (isRecord(input.payload?.responseCapture)) return null;
   const session = isRecord(input.payload?.session) ? input.payload.session : undefined;
-  if (session?.final === true) return null;
-  return input.replyTo ? getMessage(input.replyTo) : null;
+  if (isTurnFinalSession(session)) return null;
+  // Reply-path: collapse onto the parent message being acked.
+  if (input.replyTo) return getMessage(input.replyTo);
+  // Standalone self→parent path (#976): only a spawned child acking its OWN spawn-parent. Anchor to
+  // the latest inbound from that parent so the drop mirrors the reply-path collapse; if there is no
+  // prior inbound to anchor to, deliver (never drop a message we can't attribute to a conversation).
+  if (sender?.spawnedBy && sender.spawnedBy === input.to) {
+    return latestInboundMessage(input.from, sender.spawnedBy);
+  }
+  return null;
 }
 
+// Exact-match ceremonial acks (after normalization). Kept an explicit set — high precision, so a
+// real short status ("Cleared the queue", "PASS") never matches, only the bare acknowledgement.
+const PASSIVE_ACK_PHRASES = new Set([
+  "noted", "noted standing by",
+  "acknowledged", "acknowledged standing by",
+  "standing by", "ok standing by", "okay standing by",
+  "understood", "understood standing by",
+  "cleared", "will do", "will do standing by", "will comply",
+  "on it", "got it", "roger", "roger that", "copy", "copy that",
+  "sounds good", "ok", "okay", "okay will do", "thanks", "thank you",
+  "no problem", "no worries",
+]);
+
+// A short SELF-REFERENTIAL acknowledgement of an instruction about the agent's OWN reporting
+// behavior ("Going forward, I'll only use Relay mid-task…"). Bounded length + it must name the
+// messaging/reporting channel, so a genuine forward-looking REPORT that happens to open with
+// "going forward" ("going forward the build fails unless we bump node") still passes through.
+const REPORTING_META_ACK = /^(going forward|from now on)\b.{0,160}\b(relay|messages?|acks?|reports?|reporting|pings?|notif\w*)\b/;
+
 function isPassiveAck(body: string): boolean {
-  const text = body.toLowerCase().replace(/[.!]+/g, "").replace(/\s+/g, " ").trim();
-  return [
-    "noted",
-    "noted standing by",
-    "acknowledged",
-    "acknowledged standing by",
-    "standing by",
-    "ok standing by",
-    "okay standing by",
-    "understood",
-    "understood standing by",
-  ].includes(text);
+  const text = body.toLowerCase().replace(/[.!,…]+/g, " ").replace(/\s+/g, " ").trim();
+  if (!text) return false;
+  if (PASSIVE_ACK_PHRASES.has(text)) return true;
+  return text.length <= 160 && REPORTING_META_ACK.test(text);
 }

package/src/services/spawn-agent.ts

@@ -647,6 +647,9 @@ export async function spawnAgent(input: SpawnAgentInput, ctx: AuthContext): Prom
       providerArgs: input.providerArgs ?? [],
       prompt: resolvedPrompt,
       systemPromptAppend,
+      // #1062 — stash the RAW caller brief (pre-composition) so a dashboard (non-policy) restart can
+      // re-thread it as callerSystemPromptAppend and stay fresh-spawn-identical instead of dropping it.
+      ...(resolvedSystemPromptAppend ? { callerSystemPromptAppend: resolvedSystemPromptAppend } : {}),
       relayInjectionEvents: composedInstructions.relayInjectionEvents,
       landStrategy: input.landStrategy,
       autoMerge: input.autoMerge,

package/src/spawn-command.ts

@@ -96,6 +96,13 @@ interface BuildSpawnCommandOptions {
   providerArgs?: string[];
   prompt?: string;
   systemPromptAppend?: string;
+  /**
+   * #1062 — the RAW caller/parent brief (before project/profile/memory composition), persisted
+   * alongside the composed `systemPromptAppend` so a dashboard (non-policy) restart can re-thread it
+   * as `callerSystemPromptAppend` and re-project the rest fresh — otherwise the restart re-composes
+   * project/profile/memory but silently drops the parent's original task brief.
+   */
+  callerSystemPromptAppend?: string;
   relayInjectionEvents?: unknown[];
   landStrategy?: WorkspaceLandingPolicy;
   autoMerge?: WorkspaceAutoMergePolicy;
@@ -170,6 +177,7 @@ export function buildSpawnCommand(opts: BuildSpawnCommandOptions): Record<string
     ...def(opts.providerArgs, "providerArgs"),
     ...def(opts.prompt, "prompt"),
     ...def(opts.systemPromptAppend, "systemPromptAppend"),
+    ...def(opts.callerSystemPromptAppend, "callerSystemPromptAppend"),
     ...def(opts.relayInjectionEvents, "relayInjectionEvents"),
     ...def(opts.landStrategy, "landStrategy"),
     ...def(opts.autoMerge, "autoMerge"),

package/src/spawn-targets.ts

@@ -6,7 +6,7 @@ import { renderTemplate } from "./prompt-resolver";
 import { getRoutingPolicy } from "./routing-policy-store";
 import { isPathWithinBase } from "./utils";
 import { McpNotFoundError } from "./mcp-errors";
-import { DEFAULT_QUOTA_PREFER_SLACK_AT, DEFAULT_QUOTA_TARGET_UTILIZATION, quotaPaceMetrics } from "agent-relay-sdk/provider-quota";
+import { DEFAULT_QUOTA_PREFER_SLACK_AT, DEFAULT_QUOTA_TARGET_UTILIZATION, quotaOvershootPenalty, quotaPaceMetrics } from "agent-relay-sdk/provider-quota";
 import { isSpawnProvider, type ProviderQuotaRoutingConfig } from "agent-relay-sdk";
 import type { Orchestrator, ProviderCatalogSummary, ProviderQuotaBurnRole, ProviderQuotaBurnWindow, ProviderQuotaRecord, QuotaState, SpawnProvider } from "./types";
 
@@ -82,13 +82,11 @@ interface SpawnQuotaBurnWindow {
   timeToWallMs: number | null;
   projectedWallAt: number | null;
   earlyWallMs: number | null;
-  earlyFraction: number | null;
   // #760 — symmetric underburn signal (see ProviderQuotaBurnWindow.slack), re-derived against
   // the per-provider target, plus the "prefer" flag for this window.
   projectedUtilAtReset: number | null;
   slack: number | null;
   prefer: boolean;
-  weight: 1 | 3;
   penalty: number;
   blockedNow: boolean;
 }
@@ -272,45 +270,34 @@ function spawnQuotaWindow(
 ): SpawnQuotaBurnWindow | undefined {
   if (!quotaWindow) return undefined;
   const timeToResetMs = typeof quotaWindow.resetsAt === "number" ? Math.max(0, quotaWindow.resetsAt - now) : null;
-  // earlyWallMs may be negative (#760 symmetric); the over-pace penalty only sees the positive half.
-  const earlyFraction = burnWindow.earlyWallMs !== null && timeToResetMs && timeToResetMs > 0
-    ? Math.max(0, burnWindow.earlyWallMs) / timeToResetMs
-    : null;
-  const weight = burnWindow.role === "7d" ? 3 : 1;
   const hardBackstop = providerCfg?.hardBackstopUtilization;
-  // #760 — floor default is now 0 (off). The projection/pace gate (earlyFraction≈0 when the
-  // recency-weighted rate projects no early wall) replaces the blunt utilization floor, which
-  // used to hide a legitimate low-util-high-burst alarm. Operators may still opt back in.
+  // #760 — floor default is now 0 (off). The evidence-capped projection replaces the blunt
+  // utilization floor (which hid a legitimate low-util-high-burst alarm); operators may still opt
+  // back in to raw-utilization suppression by setting a positive floor.
   const utilizationFloor = providerCfg?.burnPenaltyUtilizationFloor ?? 0;
-  const pacePenalty = (earlyFraction ?? 0) * weight;
 
-  // #760 — re-derive the pace projection against the PER-PROVIDER target (the stored burn used
-  // the default). Slack is the symmetric underburn signal; prefer flags a window with no
-  // over-pace penalty and ≥ preferSlackAt projected headroom at reset.
+  // #1072 — the band projection is evidence-capped at INGEST off the slow rate and is
+  // target-independent, so keep it as-is and re-derive only the per-provider-target slack + penalty
+  // from it. burnRatio (display) re-paces the same slow rate against the per-provider target.
   const target = providerCfg?.targetUtilization ?? DEFAULT_QUOTA_TARGET_UTILIZATION;
   const preferSlackAt = providerCfg?.preferSlackAt ?? DEFAULT_QUOTA_PREFER_SLACK_AT;
   const blockedNow = hardBackstop === 0 ? false : quotaWindow.utilization >= (hardBackstop ?? 0.99);
+  const projectedUtilAtReset = burnWindow.projectedUtilAtReset;
   let burnRatio = burnWindow.burnRatio;
-  let projectedUtilAtReset = burnWindow.projectedUtilAtReset;
-  let slack = burnWindow.slack;
   if (burnWindow.observedRatePerMs !== null && timeToResetMs !== null && timeToResetMs > 0) {
-    const pace = quotaPaceMetrics({ utilization: quotaWindow.utilization, observedRatePerMs: burnWindow.observedRatePerMs, timeToResetMs, target });
-    burnRatio = pace.burnRatio;
-    projectedUtilAtReset = pace.projectedUtilAtReset;
-    slack = pace.slack;
+    burnRatio = quotaPaceMetrics({ utilization: quotaWindow.utilization, observedRatePerMs: burnWindow.observedRatePerMs, timeToResetMs, target }).burnRatio;
   }
 
-  // #798 — position penalty: an idle provider whose (de-biased) projection lands AT/OVER target is
-  // already over-extended, but its forward-wall pace penalty is 0 (no burn) — so without this the
-  // band would flip to "normal" and route big jobs onto a near-exhausted provider. Derive a STABLE
-  // penalty from the overshoot magnitude (slack < 0 ⇒ projectedUtilAtReset − target), decoupled
-  // from the jittery forward-burn term. Gated to idle (observedRatePerMs collapsed to 0): an ACTIVE
-  // provider is still governed entirely by the pace penalty (effective = max of the two), so this
-  // adds a floor for the parked-high case WITHOUT changing active routing. Under-target idle ⇒ 0.
-  const idle = burnWindow.observedRatePerMs !== null && burnWindow.observedRatePerMs <= 0;
-  const overshoot = slack !== null ? Math.max(0, -slack) : 0;
-  const positionPenalty = idle ? Math.min(1, overshoot / Math.max(1e-9, 1 - target)) * weight : 0;
-  const rawPenalty = Math.max(pacePenalty, positionPenalty);
+  // #1072 — ONE unified overshoot penalty (replaces #760 earlyFraction, the #1071 7d ×3 weight,
+  // and the #798 idle position penalty). The measured current overshoot counts at full weight; the
+  // projected trend overshoot is scaled by the continuous confidence, so thin evidence cannot
+  // hard-escalate on an extrapolated slope. Idle and active share this single formula — an idle
+  // over-target provider is held by the current-overshoot term (confidence-independent, so the
+  // band is flat tick-to-tick), an active climb escalates as the confidence-weighted trend crosses.
+  const confidence = burnWindow.confidenceScore ?? 0;
+  const { slack, penalty: rawPenalty } = projectedUtilAtReset !== null
+    ? quotaOvershootPenalty(projectedUtilAtReset, quotaWindow.utilization, target, confidence)
+    : { slack: burnWindow.slack, penalty: 0 };
   const penalty = quotaWindow.utilization < utilizationFloor ? 0 : rawPenalty;
   const prefer = !blockedNow && penalty === 0
     && quotaPenaltyBandFor(penalty) === "normal"
@@ -327,11 +314,9 @@ function spawnQuotaWindow(
     timeToWallMs: burnWindow.timeToWallMs,
     projectedWallAt: burnWindow.projectedWallAt,
     earlyWallMs: burnWindow.earlyWallMs,
-    earlyFraction,
     projectedUtilAtReset,
     slack,
     prefer,
-    weight,
     penalty,
     blockedNow,
   };

package/src/sse.ts

@@ -4,7 +4,7 @@ import { projectAgentStatusData } from "./agent-card-projection";
 import { emitRelayEvent, subscribeRelayEvents, type RelayEvent } from "./events";
 import { messageMatchesAgent, targetMatchesAgent } from "./agent-ref";
 import type { ActivityEvent, AgentCard, Message, RelayInjectionCategory, RelayNotification, Task } from "./types";
-import { isRecord } from "agent-relay-sdk";
+import { isRecord, isWorkFinalMessagePayload } from "agent-relay-sdk";
 import { agentProviderState } from "./provider-state";
 
 interface Connection {
@@ -165,6 +165,10 @@ function fanout(event: RelayEvent): void {
     sendNewMessages(batchMessages(event.data), event.seq);
     return;
   }
+  if (event.type === "message.finalized") {
+    sendMessageUpdate("message.finalized", event.data as unknown as Message, event.seq);
+    return;
+  }
   if (event.type === "task.updated" || event.type === "task.created" || event.type === "task.claimed" || event.type === "task.status") {
     sendTaskChanged(event.data as unknown as Task, event.type, event.seq);
     return;
@@ -203,6 +207,15 @@ function sendNewMessages(messages: Message[], seq?: number): void {
   }
 }
 
+function sendMessageUpdate(eventName: string, msg: Message, seq?: number): void {
+  const chunk = sseFrame(eventName, msg, seq);
+  const agentCache = new Map<string, AgentCard | null>();
+  for (const conn of connections.values()) {
+    if (conn.agentId && !messageMatchesAgent(msg, conn.agentId, fanoutAgent(conn.agentId, agentCache))) continue;
+    sendEncoded(conn, chunk);
+  }
+}
+
 function batchMessages(data: Record<string, unknown>): Message[] {
   const messages = (data as { messages?: unknown }).messages;
   return Array.isArray(messages) ? messages as Message[] : [];
@@ -329,6 +342,10 @@ export function emitMessageReactionUpdated(msg: Message) {
   emitRelayEvent({ type: "message.reaction_updated", source: "server", subject: String(msg.id), data: msg as unknown as Record<string, unknown> });
 }
 
+export function emitMessageFinalized(msg: Message) {
+  emitRelayEvent({ type: "message.finalized", source: "server", subject: String(msg.id), data: msg as unknown as Record<string, unknown> });
+}
+
 function sendTaskChanged(task: Task, eventType = "task.updated", seq?: number): void {
   const chunk = sseFrame(eventType, task, seq);
   const agentCache = new Map<string, AgentCard | null>();
@@ -387,6 +404,12 @@ function sendReplayEvent(conn: Connection, event: RelayEvent, agentCache: Map<st
     send(conn, "message.new", msg, event.seq);
     return;
   }
+  if (event.type === "message.finalized" && conn.agentId) {
+    const msg = event.data as unknown as Message;
+    if (!messageMatchesAgent(msg, conn.agentId, fanoutAgent(conn.agentId, agentCache))) return;
+    send(conn, "message.finalized", msg, event.seq);
+    return;
+  }
   if (event.type.startsWith("task.") && conn.agentId) {
     const task = event.data as unknown as Task;
     if (!targetMatchesAgent(task.target, conn.agentId, fanoutAgent(conn.agentId, agentCache))) return;
@@ -481,8 +504,7 @@ function isInboundChannelMessage(msg: Message): boolean {
 
 function isBadgeWorthyMessage(msg: Message): boolean {
   if (msg.kind !== "session") return false;
-  const session = isRecord(msg.payload?.session) ? msg.payload.session : undefined;
-  return session?.final === true;
+  return isWorkFinalMessagePayload(msg.payload);
 }
 
 function notificationForMessage(msg: Message): RelayNotification | undefined {

package/src/workspace-merge.ts

@@ -3,6 +3,7 @@ import { isRecord, stringValue } from "agent-relay-sdk";
 import { createCommand } from "./commands-db";
 import {
   acquireMergeLease,
+  exitCertificateMatchesInstance,
   getActiveMergePause,
   getAgent,
   listAgents,
@@ -11,6 +12,7 @@ import {
   setMergeLeaseCommand,
   updateWorkspaceStatus,
 } from "./db";
+import { OFFLINE_PRUNE_MS } from "./config";
 import { getLandingConfig } from "./config-store";
 import type {
   Command,
@@ -149,15 +151,33 @@ export function withOwnerOnline<T extends { ownerAgentId?: string }>(workspace:
 // the 2026-07-04 cascade). A genuine process exit is only known when the owning
 // orchestrator REPORTS it: it stamps `meta.lastExit` (routes/orchestrator.ts). So
 // require both offline AND a reported exit before treating the owner as gone — never
-// nuke/land a worktree on a heartbeat gap alone. Conservative by design: an unmanaged
-// agent with no orchestrator never gets `lastExit`, so it reads as maybe-alive and the
-// orphan reaper's land-safety + grace window handle its eventual cleanup instead.
+// nuke/land a worktree on a heartbeat gap alone.
+//
+// The confirmed-gone signal is the reconciling primitive between two opposing failures:
+//   • false POSITIVE (#1054/#1059) — reaping a live-but-lagging owner. Guarded by requiring
+//     a reported exit AND that the exit certificate belongs to the CURRENT instance: a stale
+//     report for a superseded session carries a different `spawnRequestId` and is rejected.
+//   • false NEGATIVE (#1060) — leaking a genuinely-gone owner's worktree. A MISSING row (pruned
+//     after OFFLINE_PRUNE_MS offline, or an explicit deleteAgent) can't be a live process under
+//     relay management, so it is gone; likewise an owner offline past the prune horizon is about
+//     to be pruned anyway and can't be a mere heartbeat-lagging owner (that window is bounded by
+//     OFFLINE_PRUNE_MS). Both restore the pre-#1054 isOwnerAlive reapability the #1054 gate lost.
 export function isOwnerProcessConfirmedGone(ownerAgentId: string | undefined): boolean {
   if (!ownerAgentId) return false;
   const agent = getAgent(ownerAgentId);
-  if (!agent || agent.status !== "offline") return false;
+  // #1060 — the owner row is gone (24h-offline prune or deleteAgent): genuinely gone, reapable.
+  if (!agent) return true;
+  if (agent.status !== "offline") return false;
+  // #1060(3) — offline past the prune horizon: can't be a live-but-lagging owner and is about to
+  // become a missing row anyway. Covers an unmanaged owner that never gets meta.lastExit.
+  if (Date.now() - agent.lastSeen >= OFFLINE_PRUNE_MS) return true;
   const meta = isRecord(agent.meta) ? agent.meta : undefined;
-  return Boolean(meta && meta.lastExit);
+  if (!meta) return false;
+  const lastExit = isRecord(meta.lastExit) ? meta.lastExit : undefined;
+  if (!lastExit) return false;
+  // #1059 — the reported exit must be for THIS instance, not a stale certificate stamped by a
+  // late report for a superseded predecessor (see exitCertificateMatchesInstance).
+  return exitCertificateMatchesInstance(meta, lastExit);
 }
 
 function workspaceOwnerHostKeys(workspace: WorkspaceRecord): Set<string> {

package/src/workspace-orphans.ts

@@ -26,7 +26,7 @@ import { createCommand } from "./commands-db";
 import { emitRelayEvent } from "./events";
 import { isPathWithinBase } from "./utils";
 import { TERMINAL_WORKSPACE_STATUSES, worktreeReapable, type WorktreeReapState } from "./workspace-phase";
-import { isOwnerAlive, liveAgentCwds, worktreeInUseByLiveAgent } from "./workspace-merge";
+import { isOwnerAlive, isOwnerProcessConfirmedGone, liveAgentCwds, worktreeInUseByLiveAgent } from "./workspace-merge";
 import { applyWorkspaceAction } from "./workspace-actions";
 import { workspaceOwnerOrchestrator } from "./workspace-host";
 import { UNLANDED_FLAG_COOLDOWN_MS, orphanGraceMs, orphanWorktreeReapEnabled, relayToken } from "./config";
@@ -606,14 +606,21 @@ export async function reapOrphanedWorktrees(): Promise<Record<string, unknown>>
     const key = `dead-owner:${resolve(workspace.worktreePath)}`;
     liveDeadOwnerKeys.add(key);
 
-    if (isOwnerAlive(workspace.ownerAgentId)) {
-      deadOwnerTracker.delete(key); // owner alive — reset the grace window (regression vs #278)
+    // #1054 — gate on PROCESS-confirmed death, not heartbeat-only liveness. A live
+    // owner that is falsely marked `offline` (sustained relay lag / network partition
+    // >30min) has no orchestrator-reported `meta.lastExit`; isOwnerAlive alone would
+    // treat it as reap-eligible and destroy its landed+clean worktree — killing the
+    // live session's cwd. worktreeInUseByLiveAgent can't protect it (offline owners are
+    // excluded from liveCwds). Require offline AND a reported exit before the grace clock
+    // even starts, so only a genuinely-gone owner's worktree is ever reaped.
+    if (!isOwnerProcessConfirmedGone(workspace.ownerAgentId)) {
+      deadOwnerTracker.delete(key); // alive, or falsely-offline live — reset the grace window (#1054/#278)
       continue;
     }
 
-    // Owner observed dead. Require continuous dead-ness for the grace window so a
-    // reconnecting agent isn't raced; the in-memory tracker re-arms on restart. A
-    // grace of 0 reaps on the first dead observation (the env's escape hatch).
+    // Owner process confirmed gone. Require continuous confirmed-gone-ness for the grace
+    // window so a reconnecting agent isn't raced; the in-memory tracker re-arms on
+    // restart. A grace of 0 reaps on the first confirmed-gone observation (env escape hatch).
     const tracked = deadOwnerTracker.get(key);
     const firstSeenDeadAt = tracked?.firstSeenDeadAt ?? now;
     if (!tracked) deadOwnerTracker.set(key, { firstSeenDeadAt });

package/public/assets/display-exQDWum3.js

@@ -1,3 +0,0 @@
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