agent-pipeline 0.1.0

package/dist/core/pr-creator.js

@@ -0,0 +1,138 @@
+import { spawn } from 'child_process';
+import { checkGHCLI } from '../utils/gh-cli-checker.js';
+export class PRCreator {
+    executeGhCommand(args) {
+        return new Promise((resolve, reject) => {
+            const process = spawn('gh', args);
+            let stdout = '';
+            let stderr = '';
+            process.stdout.on('data', (data) => {
+                stdout += data.toString();
+            });
+            process.stderr.on('data', (data) => {
+                stderr += data.toString();
+            });
+            process.on('close', (code) => {
+                if (code === 0) {
+                    resolve(stdout);
+                }
+                else {
+                    const errorMessage = stderr || stdout || 'Unknown error';
+                    reject(new Error(`gh command failed with exit code ${code}: ${errorMessage}`));
+                }
+            });
+            process.on('error', (err) => {
+                reject(err);
+            });
+        });
+    }
+    async createPR(branchName, baseBranch, config, pipelineState) {
+        const ghStatus = await checkGHCLI();
+        if (!ghStatus.installed) {
+            throw new Error('GitHub CLI (gh) is not installed. Install from: https://cli.github.com/\n\n' +
+                'Or disable PR creation:\n' +
+                '- Remove git.pullRequest.autoCreate from your pipeline config\n' +
+                '- Or run with: agent-pipeline run <pipeline> --no-pr');
+        }
+        if (!ghStatus.authenticated) {
+            throw new Error('GitHub CLI is not authenticated. Run: gh auth login\n\n' +
+                'Or disable PR creation:\n' +
+                '- Run with: agent-pipeline run <pipeline> --no-pr');
+        }
+        const title = config.title ||
+            `🤖 [Agent Pipeline] ${pipelineState.pipelineConfig.name}`;
+        const body = config.body || PRCreator.buildDefaultPRBody(pipelineState);
+        const args = [
+            'pr', 'create',
+            '--base', baseBranch,
+            '--head', branchName,
+            '--title', title,
+            '--body', body
+        ];
+        if (config.draft) {
+            args.push('--draft');
+        }
+        if (config.reviewers && config.reviewers.length > 0) {
+            args.push('--reviewer', config.reviewers.join(','));
+        }
+        if (config.labels && config.labels.length > 0) {
+            args.push('--label', config.labels.join(','));
+        }
+        if (config.assignees && config.assignees.length > 0) {
+            args.push('--assignee', config.assignees.join(','));
+        }
+        if (config.milestone) {
+            args.push('--milestone', config.milestone);
+        }
+        if (config.web) {
+            args.push('--web');
+        }
+        console.log(`\n🚀 Creating pull request...`);
+        try {
+            const stdout = await this.executeGhCommand(args);
+            const urlMatch = stdout.match(/https:\/\/github\.com\/[^\s]+/);
+            const url = urlMatch ? urlMatch[0] : '';
+            const numberMatch = stdout.match(/#(\d+)/);
+            const number = numberMatch ? parseInt(numberMatch[1]) : 0;
+            return { url, number };
+        }
+        catch (error) {
+            if (error instanceof Error) {
+                if (error.message.includes('already exists')) {
+                    throw new Error(`A pull request already exists for ${branchName}. ` +
+                        `View it with: gh pr view ${branchName}`);
+                }
+                throw new Error(`Failed to create PR: ${error.message}`);
+            }
+            throw error;
+        }
+    }
+    static buildDefaultPRBody(state) {
+        const successCount = state.stages.filter(s => s.status === 'success').length;
+        const totalCount = state.stages.length;
+        const summary = `
+## 🤖 Agent Pipeline Summary
+
+**Pipeline:** ${state.pipelineConfig.name}
+**Run ID:** \`${state.runId}\`
+**Status:** ${state.status === 'completed' ? '✅ Completed' : '⚠️ ' + state.status}
+**Duration:** ${state.artifacts.totalDuration?.toFixed(2)}s
+**Stages:** ${successCount}/${totalCount} successful
+
+### Stages Executed
+
+${state.stages.map((s, i) => {
+            const icon = s.status === 'success' ? '✅' :
+                s.status === 'failed' ? '❌' :
+                    s.status === 'skipped' ? '⏭️' : '⏳';
+            const retry = (s.retryAttempt || 0) > 0 ? ` (${s.retryAttempt} retries)` : '';
+            return `${i + 1}. ${icon} **${s.stageName}** - ${s.duration?.toFixed(2)}s${retry}`;
+        }).join('\n')}
+
+### Commits
+
+${state.stages
+            .filter(s => s.commitSha)
+            .map(s => `- \`${s.commitSha?.substring(0, 7)}\` ${s.commitMessage}`)
+            .join('\n')}
+
+---
+
+*This PR was automatically generated by Agent Pipeline*
+    `.trim();
+        return summary;
+    }
+    async viewPR(branchName) {
+        await this.executeGhCommand(['pr', 'view', branchName, '--web']);
+    }
+    async prExists(branchName) {
+        try {
+            await this.executeGhCommand(['pr', 'view', branchName]);
+            return true;
+        }
+        catch {
+            return false;
+        }
+    }
+}
+//# sourceMappingURL=pr-creator.js.map

package/dist/core/pr-creator.js.map

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package/dist/core/retry-handler.d.ts

@@ -0,0 +1,15 @@
+import { RetryConfig } from '../config/schema.js';
+export interface RetryContext {
+    attemptNumber: number;
+    maxAttempts: number;
+    lastError?: unknown;
+    delays: number[];
+}
+export declare class RetryHandler {
+    executeWithRetry<T>(fn: () => Promise<T>, retryConfig: RetryConfig | undefined, onRetry?: (context: RetryContext) => void): Promise<T>;
+    private calculateDelay;
+    private shouldRetry;
+    private sleep;
+    static formatDelay(ms: number): string;
+}
+//# sourceMappingURL=retry-handler.d.ts.map

package/dist/core/retry-handler.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/retry-handler.js

@@ -0,0 +1,95 @@
+export class RetryHandler {
+    async executeWithRetry(fn, retryConfig, onRetry) {
+        const maxAttempts = retryConfig ? (retryConfig.maxAttempts ?? 3) : 1;
+        const context = {
+            attemptNumber: 0,
+            maxAttempts,
+            delays: []
+        };
+        for (let attempt = 0; attempt < maxAttempts; attempt++) {
+            context.attemptNumber = attempt;
+            try {
+                const result = await fn();
+                return result;
+            }
+            catch (error) {
+                context.lastError = error;
+                const isLastAttempt = attempt === maxAttempts - 1;
+                if (isLastAttempt) {
+                    throw error;
+                }
+                if (!this.shouldRetry(error)) {
+                    throw error;
+                }
+                const delay = this.calculateDelay(attempt, retryConfig);
+                context.delays.push(delay);
+                if (onRetry) {
+                    onRetry(context);
+                }
+                await this.sleep(delay);
+            }
+        }
+        throw new Error('Retry logic error: exceeded max attempts without throwing');
+    }
+    calculateDelay(attempt, config) {
+        const initialDelay = config?.initialDelay || 1000;
+        const maxDelay = config?.maxDelay || 30000;
+        let delay;
+        switch (config?.backoff) {
+            case 'exponential':
+                delay = initialDelay * Math.pow(2, attempt);
+                break;
+            case 'linear':
+                delay = initialDelay * (attempt + 1);
+                break;
+            case 'fixed':
+            default:
+                delay = initialDelay;
+                break;
+        }
+        return Math.min(delay, maxDelay);
+    }
+    shouldRetry(error) {
+        const message = (error instanceof Error ? error.message : String(error)).toLowerCase();
+        if (message.includes('401') || message.includes('403') || message.includes('unauthorized')) {
+            return false;
+        }
+        if (message.includes('enoent') || message.includes('no such file')) {
+            return false;
+        }
+        if (message.includes('yaml') || message.includes('parse error')) {
+            return false;
+        }
+        if (message.includes('invalid') && message.includes('config')) {
+            return false;
+        }
+        if (message.includes('timeout') ||
+            message.includes('network') ||
+            message.includes('econnrefused') ||
+            message.includes('econnreset') ||
+            message.includes('etimedout') ||
+            message.includes('429') ||
+            message.includes('500') ||
+            message.includes('502') ||
+            message.includes('503') ||
+            message.includes('504')) {
+            return true;
+        }
+        return true;
+    }
+    sleep(ms) {
+        return new Promise(resolve => setTimeout(resolve, ms));
+    }
+    static formatDelay(ms) {
+        if (ms < 1000) {
+            return `${ms}ms`;
+        }
+        else if (ms < 60000) {
+            return `${(ms / 1000).toFixed(1)}s`;
+        }
+        else {
+            return `${(ms / 60000).toFixed(1)}m`;
+        }
+    }
+}
+//# sourceMappingURL=retry-handler.js.map

package/dist/core/retry-handler.js.map

@@ -0,0 +1 @@
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package/dist/core/stage-executor.d.ts

@@ -0,0 +1,27 @@
+import { GitManager } from './git-manager.js';
+import { AgentRuntime } from './types/agent-runtime.js';
+import { AgentStageConfig, StageExecution, PipelineState, LoopContext } from '../config/schema.js';
+export declare class StageExecutor {
+    private gitManager;
+    private dryRun;
+    private defaultRuntime?;
+    private loopContext?;
+    private retryHandler;
+    private outputStorageManager;
+    constructor(gitManager: GitManager, dryRun: boolean, runId: string, repoPath: string, defaultRuntime?: AgentRuntime | undefined, loopContext?: LoopContext | undefined);
+    private buildClaudeAgentOptions;
+    private resolveStageRuntime;
+    private loadSystemPrompt;
+    private buildUserPrompt;
+    executeStage(stageConfig: AgentStageConfig, pipelineState: PipelineState, onOutputUpdate?: (output: string) => void): Promise<StageExecution>;
+    private buildAgentContext;
+    private buildRecentStagesContext;
+    private buildOlderStagesContext;
+    private buildCompressedFilesContext;
+    private buildFullFilesContext;
+    private buildLoopContextSection;
+    private checkContextTokens;
+    private runAgentWithTimeout;
+    private calculateDuration;
+}
+//# sourceMappingURL=stage-executor.d.ts.map

package/dist/core/stage-executor.d.ts.map

@@ -0,0 +1 @@
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package/dist/core/stage-executor.js

@@ -0,0 +1,365 @@
+import * as fs from 'fs/promises';
+import { RetryHandler } from './retry-handler.js';
+import { AgentRuntimeRegistry } from './agent-runtime-registry.js';
+import { OutputToolBuilder } from './output-tool-builder.js';
+import { OutputStorageManager } from './output-storage-manager.js';
+import { PipelineFormatter } from '../utils/pipeline-formatter.js';
+import { ErrorFactory } from '../utils/error-factory.js';
+import { TokenEstimator } from '../utils/token-estimator.js';
+export class StageExecutor {
+    gitManager;
+    dryRun;
+    defaultRuntime;
+    loopContext;
+    retryHandler;
+    outputStorageManager;
+    constructor(gitManager, dryRun, runId, repoPath, defaultRuntime, loopContext) {
+        this.gitManager = gitManager;
+        this.dryRun = dryRun;
+        this.defaultRuntime = defaultRuntime;
+        this.loopContext = loopContext;
+        this.retryHandler = new RetryHandler();
+        this.outputStorageManager = new OutputStorageManager(repoPath, runId);
+    }
+    buildClaudeAgentOptions(stageConfig, pipelineState) {
+        const stageSettings = stageConfig.runtime?.options;
+        const globalSettings = pipelineState.pipelineConfig.runtime?.options;
+        const options = {};
+        const model = stageSettings?.model || globalSettings?.model;
+        if (model)
+            options.model = model;
+        const maxTurns = stageSettings?.maxTurns ?? globalSettings?.maxTurns;
+        if (maxTurns !== undefined)
+            options.maxTurns = maxTurns;
+        const maxThinkingTokens = stageSettings?.maxThinkingTokens ?? globalSettings?.maxThinkingTokens;
+        if (maxThinkingTokens !== undefined)
+            options.maxThinkingTokens = maxThinkingTokens;
+        return options;
+    }
+    resolveStageRuntime(stageConfig, pipelineState) {
+        try {
+            const stageRuntimeType = stageConfig.runtime?.type;
+            if (stageRuntimeType) {
+                console.log(`   Using stage-level runtime: ${stageRuntimeType}`);
+                return AgentRuntimeRegistry.getRuntime(stageRuntimeType);
+            }
+            const pipelineRuntimeType = pipelineState.pipelineConfig.runtime?.type;
+            if (pipelineRuntimeType) {
+                console.log(`   Using pipeline-level runtime: ${pipelineRuntimeType}`);
+                return AgentRuntimeRegistry.getRuntime(pipelineRuntimeType);
+            }
+            if (this.defaultRuntime) {
+                console.log(`   Using injected default runtime`);
+                return this.defaultRuntime;
+            }
+            console.log(`   Using global default runtime: claude-code-headless`);
+            return AgentRuntimeRegistry.getRuntime('claude-code-headless');
+        }
+        catch (error) {
+            const runtimeType = stageConfig.runtime?.type ||
+                pipelineState.pipelineConfig.runtime?.type ||
+                'claude-code-headless';
+            throw new Error(`Failed to resolve runtime '${runtimeType}': ${error instanceof Error ? error.message : String(error)}`);
+        }
+    }
+    async loadSystemPrompt(agentPath) {
+        try {
+            return await fs.readFile(agentPath, 'utf-8');
+        }
+        catch (error) {
+            throw new Error(`Failed to load agent prompt from '${agentPath}': ${error instanceof Error ? error.message : String(error)}`);
+        }
+    }
+    async buildUserPrompt(stageConfig, pipelineState) {
+        return this.buildAgentContext(stageConfig, pipelineState);
+    }
+    async executeStage(stageConfig, pipelineState, onOutputUpdate) {
+        const execution = {
+            stageName: stageConfig.name,
+            status: 'running',
+            startTime: new Date().toISOString(),
+            retryAttempt: 0,
+            maxRetries: stageConfig.retry?.maxAttempts || 0
+        };
+        const runtime = this.resolveStageRuntime(stageConfig, pipelineState);
+        const executeAttempt = async () => {
+            const systemPrompt = await this.loadSystemPrompt(stageConfig.agent);
+            const userPrompt = await this.buildUserPrompt(stageConfig, pipelineState);
+            const tokenEstimator = new TokenEstimator();
+            const estimatedTokens = tokenEstimator.estimateTokens(userPrompt + systemPrompt);
+            tokenEstimator.dispose();
+            const claudeAgentOptions = this.buildClaudeAgentOptions(stageConfig, pipelineState);
+            const retryInfo = PipelineFormatter.formatRetryInfo(execution.retryAttempt, execution.maxRetries);
+            console.log(`🤖 Running stage: ${stageConfig.name}${retryInfo}...`);
+            console.log(`   Estimated input: ~${PipelineFormatter.formatTokenCount(estimatedTokens)} tokens`);
+            const result = await this.runAgentWithTimeout(runtime, userPrompt, systemPrompt, stageConfig.timeout, stageConfig.outputs, pipelineState.pipelineConfig.settings?.permissionMode || 'acceptEdits', claudeAgentOptions, onOutputUpdate);
+            execution.agentOutput = result.textOutput;
+            execution.extractedData = result.extractedData;
+            if (result.tokenUsage) {
+                execution.tokenUsage = {
+                    estimated_input: estimatedTokens,
+                    actual_input: result.tokenUsage.inputTokens,
+                    output: result.tokenUsage.outputTokens,
+                    cache_creation: result.tokenUsage.cacheCreationTokens,
+                    cache_read: result.tokenUsage.cacheReadTokens,
+                    num_turns: result.numTurns,
+                    thinking_tokens: result.tokenUsage.thinkingTokens
+                };
+            }
+            const contextReductionConfig = pipelineState.pipelineConfig.settings?.contextReduction;
+            const requireSummary = contextReductionConfig?.requireSummary ?? true;
+            if (execution.extractedData) {
+                if (requireSummary && !execution.extractedData.summary) {
+                    console.warn(`⚠️  Stage '${stageConfig.name}' did not provide 'summary' field. ` +
+                        `Context reduction may be less effective for downstream stages.`);
+                }
+                if (stageConfig.outputs && stageConfig.outputs.length > 0) {
+                    const missing = stageConfig.outputs.filter(key => !(key in execution.extractedData));
+                    if (missing.length > 0) {
+                        console.warn(`⚠️  Stage '${stageConfig.name}' did not provide expected outputs: ${missing.join(', ')}`);
+                    }
+                }
+            }
+            else if (stageConfig.outputs && stageConfig.outputs.length > 0) {
+                console.warn(`⚠️  Stage '${stageConfig.name}' did not call report_outputs tool. ` +
+                    `Expected outputs: ${stageConfig.outputs.join(', ')}`);
+            }
+            if (pipelineState.pipelineConfig.settings?.contextReduction?.saveVerboseOutputs !== false) {
+                const outputFiles = await this.outputStorageManager.saveStageOutputs(stageConfig.name, execution.extractedData, execution.agentOutput || '');
+                execution.outputFiles = outputFiles;
+            }
+            const globalAutoCommit = pipelineState.pipelineConfig.settings?.autoCommit;
+            const stageAutoCommit = stageConfig.autoCommit ?? globalAutoCommit ?? true;
+            const shouldCommit = stageAutoCommit && !this.dryRun;
+            if (shouldCommit) {
+                const commitSha = await this.gitManager.createPipelineCommit(stageConfig.name, pipelineState.runId, stageConfig.commitMessage);
+                if (commitSha) {
+                    execution.commitSha = commitSha;
+                    execution.commitMessage = await this.gitManager.getCommitMessage(commitSha);
+                    console.log(`✅ Committed changes: ${commitSha.substring(0, 7)}`);
+                }
+                else {
+                    console.log(`ℹ️  No changes to commit`);
+                }
+            }
+            else if (this.dryRun && await this.gitManager.hasUncommittedChanges()) {
+                console.log(`💡 Would commit changes (dry-run mode)`);
+            }
+        };
+        try {
+            await this.retryHandler.executeWithRetry(executeAttempt, stageConfig.retry, (context) => {
+                execution.retryAttempt = context.attemptNumber + 1;
+                const delay = context.delays[context.delays.length - 1];
+                const errorMsg = context.lastError instanceof Error
+                    ? context.lastError.message
+                    : String(context.lastError);
+                console.log(`⚠️  Stage failed (attempt ${context.attemptNumber + 1}/${context.maxAttempts}). ` +
+                    `Retrying in ${RetryHandler.formatDelay(delay)}...`);
+                console.log(`   Error: ${errorMsg}`);
+            });
+            execution.status = 'success';
+            execution.endTime = new Date().toISOString();
+            execution.duration = this.calculateDuration(execution);
+            console.log(`✅ Stage completed: ${stageConfig.name}`);
+            if (execution.tokenUsage) {
+                console.log(`   ${PipelineFormatter.formatTokenUsage(execution.tokenUsage)} | Duration: ${execution.duration.toFixed(1)}s`);
+            }
+            else {
+                console.log(`   Duration: ${execution.duration.toFixed(1)}s`);
+            }
+            return execution;
+        }
+        catch (error) {
+            execution.status = 'failed';
+            execution.endTime = new Date().toISOString();
+            execution.duration = this.calculateDuration(execution);
+            const errorDetails = ErrorFactory.createStageError(error, stageConfig.agent);
+            execution.error = errorDetails;
+            const retryInfo = execution.retryAttempt && execution.retryAttempt > 0
+                ? ` (after ${execution.retryAttempt} retries)`
+                : '';
+            console.error(`❌ Stage failed: ${stageConfig.name}${retryInfo}`);
+            console.error(`   Error: ${errorDetails.message}`);
+            if (errorDetails.agentPath) {
+                console.error(`   Agent: ${errorDetails.agentPath}`);
+            }
+            if (errorDetails.suggestion) {
+                console.error(`   💡 ${errorDetails.suggestion}`);
+            }
+            return execution;
+        }
+    }
+    async buildAgentContext(stageConfig, pipelineState) {
+        const config = pipelineState.pipelineConfig.settings?.contextReduction || {
+            enabled: true,
+            maxTokens: 50000,
+            strategy: 'summary-based',
+            contextWindow: 3,
+            requireSummary: true,
+            saveVerboseOutputs: true,
+            compressFileList: true
+        };
+        const previousStages = pipelineState.stages.filter(s => s.status === 'success');
+        const contextWindow = config.contextWindow || 3;
+        const recentStages = previousStages.slice(-contextWindow);
+        const olderStages = previousStages.slice(0, -contextWindow);
+        const recentStagesContext = this.buildRecentStagesContext(recentStages, pipelineState.runId);
+        const olderStagesContext = this.buildOlderStagesContext(olderStages, pipelineState.runId);
+        const changedFilesContext = config.compressFileList
+            ? this.buildCompressedFilesContext(pipelineState)
+            : this.buildFullFilesContext(pipelineState);
+        const outputInstructions = OutputToolBuilder.buildOutputInstructions(stageConfig.outputs);
+        const loopContextSection = this.buildLoopContextSection();
+        const context = `
+# Pipeline Context
+
+**Pipeline Run ID:** ${pipelineState.runId}
+**Current Stage:** ${stageConfig.name}
+**Trigger Commit:** ${pipelineState.trigger.commitSha}
+
+${recentStagesContext}
+
+${olderStagesContext}
+
+${changedFilesContext}
+
+${loopContextSection}
+
+## Your Task
+${JSON.stringify(stageConfig.inputs || {}, null, 2)}
+
+${outputInstructions ? `\n${outputInstructions}\n` : ''}
+
+---
+**Note:** Use the Read tool to access full outputs if you need detailed information.
+    `.trim();
+        if (config.enabled) {
+            await this.checkContextTokens(context, config);
+        }
+        return context;
+    }
+    buildRecentStagesContext(recentStages, _runId) {
+        if (recentStages.length === 0)
+            return '';
+        const stageContexts = recentStages.map(s => {
+            const summary = s.extractedData?.summary
+                ? String(s.extractedData.summary)
+                : 'No summary provided';
+            const keyMetrics = Object.entries(s.extractedData || {})
+                .filter(([key]) => key !== 'summary')
+                .map(([key, value]) => `${key}=${value}`)
+                .join(', ');
+            const fileReference = s.outputFiles?.structured
+                ? `- **Full Output:** ${s.outputFiles.structured}`
+                : '';
+            return `
+### ${s.stageName}
+- **Summary:** ${summary}
+${keyMetrics ? `- **Key Metrics:** ${keyMetrics}` : ''}
+- **Commit:** ${s.commitSha || 'No commit'}
+${fileReference}
+      `.trim();
+        }).join('\n\n');
+        return `## Previous Stages (Last ${recentStages.length} in context window)\n\n${stageContexts}`;
+    }
+    buildOlderStagesContext(olderStages, runId) {
+        if (olderStages.length === 0)
+            return '';
+        const stageNames = olderStages.map(s => s.stageName).join(', ');
+        return `## Earlier Stages\nStages ${stageNames} completed. Full history: .agent-pipeline/outputs/${runId}/pipeline-summary.json\n`;
+    }
+    buildCompressedFilesContext(pipelineState) {
+        const compressed = this.outputStorageManager.compressFileList(pipelineState.artifacts.changedFiles);
+        return `## Changed Files Summary
+${compressed}
+Full list: .agent-pipeline/outputs/${pipelineState.runId}/changed-files.txt`;
+    }
+    buildFullFilesContext(pipelineState) {
+        const files = pipelineState.artifacts.changedFiles.join('\n');
+        return `## Changed Files\n${files}`;
+    }
+    buildLoopContextSection() {
+        if (!this.loopContext?.enabled) {
+            return '';
+        }
+        return `
+## Pipeline Looping
+
+This pipeline is running in LOOP MODE. After completion, the orchestrator will check for the next pipeline to run.
+
+**To queue the next pipeline:**
+- Write a valid pipeline YAML file to: \`${this.loopContext.directories.pending}\`
+- The file will be automatically picked up and executed after this pipeline completes
+- Use the same format as regular pipeline definitions in \`.agent-pipeline/pipelines/\`
+
+**Current loop status:**
+- Iteration: ${this.loopContext.currentIteration}/${this.loopContext.maxIterations}
+- Pending directory: \`${this.loopContext.directories.pending}\`
+
+**Note:** Only create a next pipeline if your analysis determines follow-up work is needed.
+`.trim();
+    }
+    async checkContextTokens(context, config) {
+        const tokenEstimator = new TokenEstimator();
+        const { tokens, method } = await tokenEstimator.smartCount(context, config.maxTokens);
+        tokenEstimator.dispose();
+        const percentage = (tokens / config.maxTokens) * 100;
+        if (tokens > config.maxTokens) {
+            console.warn(`⚠️  Context size (${PipelineFormatter.formatTokenCount(tokens)} tokens, ${percentage.toFixed(0)}%) ` +
+                `exceeds limit (${PipelineFormatter.formatTokenCount(config.maxTokens)}). ` +
+                `Consider reducing contextWindow or using agent-based reduction.`);
+        }
+        else if (tokens > config.maxTokens * 0.8) {
+            console.log(`ℹ️  Context size: ${PipelineFormatter.formatTokenCount(tokens)} tokens ` +
+                `(${method}, ${percentage.toFixed(0)}% of limit, approaching threshold)`);
+        }
+    }
+    async runAgentWithTimeout(runtime, userPrompt, systemPrompt, timeoutSeconds, outputKeys, permissionMode = 'acceptEdits', claudeAgentOptions, onOutputUpdate) {
+        const timeout = (timeoutSeconds || 900) * 1000;
+        const warningThresholds = [
+            { time: 300 * 1000, label: '5 minutes' },
+            { time: 600 * 1000, label: '10 minutes' },
+            { time: 780 * 1000, label: '13 minutes' }
+        ];
+        const warningTimers = [];
+        const runQuery = async () => {
+            warningThresholds.forEach(({ time, label }) => {
+                if (time < timeout) {
+                    const timer = setTimeout(() => {
+                        console.warn(`⚠️  Agent still running after ${label}. Hard timeout at ${(timeout / 1000 / 60).toFixed(0)} minutes.`);
+                    }, time);
+                    warningTimers.push(timer);
+                }
+            });
+            const request = {
+                systemPrompt,
+                userPrompt,
+                options: {
+                    timeout: timeoutSeconds,
+                    outputKeys,
+                    permissionMode,
+                    model: claudeAgentOptions?.model,
+                    maxTurns: claudeAgentOptions?.maxTurns,
+                    maxThinkingTokens: claudeAgentOptions?.maxThinkingTokens,
+                    onOutputUpdate
+                }
+            };
+            const result = await runtime.execute(request);
+            warningTimers.forEach(timer => clearTimeout(timer));
+            return result;
+        };
+        const timeoutPromise = new Promise((_, reject) => setTimeout(() => {
+            warningTimers.forEach(timer => clearTimeout(timer));
+            reject(new Error('Agent timeout'));
+        }, timeout));
+        return Promise.race([runQuery(), timeoutPromise]);
+    }
+    calculateDuration(execution) {
+        if (!execution.endTime)
+            return 0;
+        const start = new Date(execution.startTime).getTime();
+        const end = new Date(execution.endTime).getTime();
+        return (end - start) / 1000;
+    }
+}
+//# sourceMappingURL=stage-executor.js.map