agent-orcha 0.0.4 → 0.0.5

package/dist/lib/knowledge/knowledge-store-factory.js

@@ -1,376 +0,0 @@
-import { MemoryVectorStore } from '@langchain/classic/vectorstores/memory';
-import { Chroma } from '@langchain/community/vectorstores/chroma';
-import { OpenAIEmbeddings } from '@langchain/openai';
-import { GoogleGenerativeAIEmbeddings } from '@langchain/google-genai';
-import { TextLoader } from '@langchain/classic/document_loaders/fs/text';
-import { PDFLoader } from '@langchain/community/document_loaders/fs/pdf';
-import { CSVLoader } from '@langchain/community/document_loaders/fs/csv';
-import { JSONLoader } from '@langchain/classic/document_loaders/fs/json';
-import { CharacterTextSplitter, RecursiveCharacterTextSplitter } from '@langchain/textsplitters';
-import { glob } from 'glob';
-import * as path from 'path';
-import { getEmbeddingConfig } from '../llm/llm-config.js';
-import { detectProvider } from '../llm/provider-detector.js';
-import { createLogger } from '../logger.js';
-import { DatabaseLoader, WebLoader, S3Loader } from './loaders/index.js';
-const logger = createLogger('KnowledgeFactory');
-const searchLogger = createLogger('KnowledgeSearch');
-export class KnowledgeStoreFactory {
-    static async create(config, projectRoot) {
-        logger.info(`Loading documents for "${config.name}"...`);
-        const documents = await this.loadDocuments(config, projectRoot);
-        logger.info(`Loaded ${documents.length} document(s)`);
-        const splitDocs = await this.splitDocuments(config, documents);
-        logger.info(`Split into ${splitDocs.length} chunk(s)`);
-        const embeddingConfigName = config.embedding;
-        logger.info(`Using embedding config: "${embeddingConfigName}"`);
-        const embeddings = this.createEmbeddings(embeddingConfigName);
-        // Test embeddings to ensure they work correctly
-        if (splitDocs.length > 0) {
-            const testDoc = splitDocs[0];
-            if (!testDoc) {
-                throw new Error('First document is undefined');
-            }
-            try {
-                const testText = testDoc.pageContent.substring(0, 100);
-                const testEmbedding = await embeddings.embedQuery(testText);
-                if (!testEmbedding || testEmbedding.length === 0 || testEmbedding.some(v => !isFinite(v))) {
-                    throw new Error(`Embedding test failed: returned invalid values`);
-                }
-                logger.info(`Embedding test successful (dimension: ${testEmbedding.length})`);
-            }
-            catch (error) {
-                const errorMessage = error instanceof Error ? error.message : String(error);
-                logger.error(`Embedding test failed: ${errorMessage}`);
-                throw new Error(`Failed to create embeddings for knowledge store "${config.name}": ${errorMessage}`);
-            }
-        }
-        logger.info(`Building knowledge store...`);
-        const store = await this.createStore(config, splitDocs, embeddings, projectRoot);
-        logger.info(`Knowledge store "${config.name}" ready`);
-        return {
-            config,
-            search: async (query, k) => {
-                const numResults = k ?? config.search?.defaultK ?? 4;
-                searchLogger.info(`Searching "${config.name}" for: "${query.substring(0, 50)}..." (k=${numResults})`);
-                try {
-                    // Expand short queries - some embedding models struggle with very short or terse text
-                    // Expand if less than 30 chars or less than 4 words to ensure better embedding quality
-                    let searchQuery = query.trim();
-                    const wordCount = searchQuery.split(/\s+/).filter(w => w.length > 0).length;
-                    if (searchQuery.length < 30 || wordCount < 4) {
-                        searchLogger.warn(`Query is short (${searchQuery.length} chars, ${wordCount} words), expanding with context`);
-                        // Add context based on the knowledge store description to make query more descriptive
-                        const storeContext = config.description
-                            ? `${config.description.toLowerCase()} information about`
-                            : 'information about';
-                        searchQuery = `${storeContext} ${searchQuery}`;
-                        searchLogger.info(`Expanded query: "${searchQuery}"`);
-                    }
-                    // Note: We validate the embedding here for diagnostics, but MemoryVectorStore
-                    // will embed the query again internally. If our validation fails but the store's
-                    // embedding works, we'll still get results.
-                    let queryEmbedding = null;
-                    try {
-                        queryEmbedding = await embeddings.embedQuery(searchQuery);
-                        if (queryEmbedding && queryEmbedding.length > 0) {
-                            const invalidValues = queryEmbedding.filter(v => !isFinite(v));
-                            const isZeroVector = queryEmbedding.every(v => v === 0);
-                            if (invalidValues.length > 0) {
-                                searchLogger.warn(`Validation embedding contains ${invalidValues.length} invalid values (NaN/Inf) - proceeding with search`);
-                            }
-                            else if (isZeroVector) {
-                                searchLogger.warn(`Validation embedding is a zero vector for query: "${searchQuery}"`);
-                                // Try with original query if we expanded it
-                                if (searchQuery !== query) {
-                                    searchLogger.warn(`Trying original query instead`);
-                                    try {
-                                        const originalEmbedding = await embeddings.embedQuery(query);
-                                        if (originalEmbedding && originalEmbedding.length > 0 && !originalEmbedding.every(v => v === 0)) {
-                                            searchQuery = query;
-                                            queryEmbedding = originalEmbedding;
-                                            searchLogger.info(`Original query embedding successful`);
-                                        }
-                                    }
-                                    catch (e) {
-                                        // Keep using expanded query
-                                    }
-                                }
-                                searchLogger.warn(`Proceeding with search - MemoryVectorStore will embed the query internally`);
-                            }
-                            else {
-                                const norm = Math.sqrt(queryEmbedding.reduce((sum, v) => sum + v * v, 0));
-                                searchLogger.info(`Query validation successful (dimension: ${queryEmbedding.length}, norm: ${norm.toFixed(3)})`);
-                            }
-                        }
-                        else {
-                            searchLogger.warn(`Validation embedding returned empty array - proceeding with search`);
-                        }
-                    }
-                    catch (embedError) {
-                        const embedErrorMessage = embedError instanceof Error ? embedError.message : String(embedError);
-                        searchLogger.warn(`Query validation embedding failed: ${embedErrorMessage} - proceeding with search anyway`);
-                        // Don't return - let MemoryVectorStore try embedding internally
-                    }
-                    // MemoryVectorStore will embed the query internally using its stored embeddings instance
-                    // Use the query that worked best (original or expanded)
-                    const results = await store.similaritySearchWithScore(searchQuery, numResults);
-                    // Filter out NaN scores and log warnings with more details
-                    const validResults = results.filter(([doc, score]) => {
-                        if (isNaN(score) || !isFinite(score)) {
-                            searchLogger.warn(`Invalid score detected: ${score} for document: "${doc.pageContent.substring(0, 50)}..."`);
-                            return false;
-                        }
-                        return true;
-                    });
-                    searchLogger.info(`Raw results: ${results.length}, valid: ${validResults.length}, scores: ${validResults.map(([, s]) => s.toFixed(3)).join(', ')}`);
-                    // If all results have NaN scores, this indicates the embedding API failed
-                    // Try a fallback: return all documents with a low score so the agent at least gets some context
-                    if (validResults.length === 0 && results.length > 0) {
-                        searchLogger.error(`All results have invalid scores - embedding API may be failing`);
-                        searchLogger.error(`This is a critical issue - returning empty results. Check embedding API at ${config.embedding}`);
-                        // Return empty - the agent will need to handle this
-                        return [];
-                    }
-                    const threshold = config.search?.scoreThreshold;
-                    const filtered = validResults.filter(([, score]) => {
-                        if (threshold === undefined)
-                            return true;
-                        return score >= threshold;
-                    });
-                    searchLogger.info(`After threshold (${threshold ?? 'none'}): ${filtered.length} result(s)`);
-                    return filtered.map(([doc, score]) => ({
-                        content: doc.pageContent,
-                        metadata: doc.metadata,
-                        score,
-                    }));
-                }
-                catch (error) {
-                    const errorMessage = error instanceof Error ? error.message : String(error);
-                    searchLogger.error(`Error during search: ${errorMessage}`, error);
-                    return [];
-                }
-            },
-            addDocuments: async (docs) => {
-                const langchainDocs = docs.map((d) => ({
-                    pageContent: d.content,
-                    metadata: d.metadata ?? {},
-                }));
-                await store.addDocuments(langchainDocs);
-            },
-            refresh: async () => {
-                const newDocs = await this.loadDocuments(config, projectRoot);
-                const splitNewDocs = await this.splitDocuments(config, newDocs);
-                await store.addDocuments(splitNewDocs);
-            },
-        };
-    }
-    static async loadDocuments(config, projectRoot) {
-        // Handle database sources
-        if (config.source.type === 'database') {
-            logger.info(`Loading from database source`);
-            const dbLoader = new DatabaseLoader(config.source);
-            return dbLoader.load();
-        }
-        // Handle web sources
-        if (config.source.type === 'web') {
-            logger.info(`Loading from web source`);
-            const webLoader = new WebLoader(config.source);
-            return webLoader.load();
-        }
-        // Handle S3 sources
-        if (config.source.type === 's3') {
-            logger.info(`Loading from S3 source`);
-            const s3Loader = new S3Loader(config.source);
-            return s3Loader.load();
-        }
-        // Handle file-based sources (directory and file)
-        const sourcePath = path.join(projectRoot, config.source.path);
-        if (config.source.type === 'directory') {
-            const pattern = config.source.pattern ?? '*';
-            logger.info(`Searching for files in: ${sourcePath}`);
-            logger.info(`Using pattern: ${pattern}`);
-            const files = await glob(pattern, { cwd: sourcePath, absolute: true });
-            logger.info(`Found ${files.length} file(s):`, files.map(f => path.basename(f)));
-            const allDocs = [];
-            for (const file of files) {
-                const loader = this.createLoader(config.loader.type, file);
-                const docs = await loader.load();
-                logger.info(`Loaded ${docs.length} doc(s) from ${path.basename(file)}`);
-                allDocs.push(...docs);
-            }
-            return allDocs;
-        }
-        // Handle single file source
-        if (config.source.type === 'file') {
-            const loader = this.createLoader(config.loader.type, sourcePath);
-            return loader.load();
-        }
-        // This should never be reached due to discriminated union exhaustiveness
-        const _exhaustiveCheck = config.source;
-        throw new Error(`Unknown source type: ${_exhaustiveCheck.type}`);
-    }
-    static createLoader(type, filePath) {
-        switch (type) {
-            case 'pdf':
-                return new PDFLoader(filePath);
-            case 'csv':
-                return new CSVLoader(filePath);
-            case 'json':
-                return new JSONLoader(filePath);
-            case 'text':
-            case 'markdown':
-            default:
-                return new TextLoader(filePath);
-        }
-    }
-    static async splitDocuments(config, documents) {
-        const splitterConfig = {
-            chunkSize: config.splitter.chunkSize,
-            chunkOverlap: config.splitter.chunkOverlap,
-            separator: config.splitter.separator,
-        };
-        const splitter = config.splitter.type === 'recursive'
-            ? new RecursiveCharacterTextSplitter(splitterConfig)
-            : new CharacterTextSplitter(splitterConfig);
-        return splitter.splitDocuments(documents);
-    }
-    static createEmbeddings(configName) {
-        const embeddingConfig = getEmbeddingConfig(configName);
-        const provider = detectProvider(embeddingConfig);
-        const eosToken = embeddingConfig.eosToken;
-        logger.info(`Embedding model: ${embeddingConfig.model} (provider: ${provider})${embeddingConfig.baseUrl ? `, URL: ${embeddingConfig.baseUrl}` : ''}`);
-        if (eosToken) {
-            logger.info(`Using EOS token: "${eosToken}"`);
-        }
-        let baseEmbeddings;
-        switch (provider) {
-            case 'gemini':
-                logger.info('Creating Gemini embeddings');
-                baseEmbeddings = new GoogleGenerativeAIEmbeddings({
-                    modelName: embeddingConfig.model,
-                    apiKey: embeddingConfig.apiKey,
-                });
-                break;
-            case 'openai':
-            case 'local':
-            case 'anthropic':
-            default: {
-                const openAIConfig = {
-                    modelName: embeddingConfig.model,
-                    openAIApiKey: embeddingConfig.apiKey,
-                    configuration: embeddingConfig.baseUrl ? { baseURL: embeddingConfig.baseUrl } : undefined,
-                    // CRITICAL: Force float encoding to get number arrays instead of base64 strings
-                    // LM Studio and other local servers need this to return valid embeddings
-                    encodingFormat: 'float',
-                };
-                // Add dimensions if specified
-                if (embeddingConfig.dimensions) {
-                    openAIConfig.dimensions = embeddingConfig.dimensions;
-                }
-                logger.info(`Creating OpenAI-compatible embeddings (encoding: float)${embeddingConfig.dimensions ? ` (dimensions: ${embeddingConfig.dimensions})` : ''}`);
-                baseEmbeddings = new OpenAIEmbeddings(openAIConfig);
-                break;
-            }
-        }
-        // Wrap embeddings to add validation and EOS token support
-        return this.wrapWithValidation(baseEmbeddings, eosToken);
-    }
-    /**
-     * Wraps embeddings with validation and optional EOS token support
-     */
-    static wrapWithValidation(embeddings, eosToken) {
-        const appendToken = (text) => {
-            if (!eosToken)
-                return text;
-            // Only append if not already present
-            if (text.endsWith(eosToken)) {
-                return text;
-            }
-            return `${text}${eosToken}`;
-        };
-        const validateEmbedding = (result, context) => {
-            if (!Array.isArray(result) || result.length === 0) {
-                throw new Error(`${context}: Embedding returned invalid format - expected array of numbers, got ${typeof result}`);
-            }
-            if (result.some(v => typeof v !== 'number')) {
-                throw new Error(`${context}: Embedding contains non-numeric values`);
-            }
-            if (result.some(v => !isFinite(v))) {
-                throw new Error(`${context}: Embedding contains NaN or Infinity values`);
-            }
-            // Check for zero vector (usually indicates API failure)
-            const isZeroVector = result.every(v => v === 0);
-            if (isZeroVector) {
-                throw new Error(`${context}: Embedding returned a zero vector - API may have failed or returned invalid data`);
-            }
-            return result;
-        };
-        const validateEmbeddings = (result, context) => {
-            if (!Array.isArray(result)) {
-                throw new Error(`${context}: Embedding returned invalid format - expected array of arrays`);
-            }
-            return result.map((embedding, idx) => validateEmbedding(embedding, `${context}[${idx}]`));
-        };
-        // Store original methods
-        const originalEmbedQuery = embeddings.embedQuery.bind(embeddings);
-        const originalEmbedDocuments = embeddings.embedDocuments.bind(embeddings);
-        // Override with validation
-        embeddings.embedQuery = async (text) => {
-            try {
-                const processedText = appendToken(text);
-                const result = await originalEmbedQuery(processedText);
-                return validateEmbedding(result, 'embedQuery');
-            }
-            catch (error) {
-                const errorMessage = error instanceof Error ? error.message : String(error);
-                logger.error(`Embedding query failed for text: "${text.substring(0, 50)}..."`);
-                logger.error(`Error: ${errorMessage}`);
-                throw new Error(`Embedding query failed: ${errorMessage}`);
-            }
-        };
-        embeddings.embedDocuments = async (texts) => {
-            try {
-                const processedTexts = texts.map(appendToken);
-                const result = await originalEmbedDocuments(processedTexts);
-                return validateEmbeddings(result, 'embedDocuments');
-            }
-            catch (error) {
-                const errorMessage = error instanceof Error ? error.message : String(error);
-                logger.error(`Embedding documents failed for ${texts.length} text(s)`);
-                logger.error(`Error: ${errorMessage}`);
-                throw new Error(`Embedding documents failed: ${errorMessage}`);
-            }
-        };
-        return embeddings;
-    }
-    static async createStore(config, docs, embeddings, projectRoot) {
-        switch (config.store.type) {
-            case 'chroma': {
-                const chromaPath = config.store.options?.path
-                    ? path.resolve(projectRoot, config.store.options.path)
-                    : path.resolve(projectRoot, '.chroma');
-                const collectionName = config.store.options?.collectionName ?? config.name;
-                const url = config.store.options?.url ?? 'http://localhost:8000';
-                logger.info(`Using Chroma at ${url} (collection: ${collectionName}, path: ${chromaPath})`);
-                return Chroma.fromDocuments(docs, embeddings, {
-                    collectionName,
-                    url,
-                    collectionMetadata: {
-                        'hnsw:space': 'cosine',
-                    },
-                });
-            }
-            case 'memory':
-                return MemoryVectorStore.fromDocuments(docs, embeddings);
-            case 'pinecone':
-            case 'qdrant':
-                logger.warn(`Store type "${config.store.type}" not yet implemented, falling back to memory`);
-                return MemoryVectorStore.fromDocuments(docs, embeddings);
-            default:
-                logger.warn(`Unknown store type "${config.store.type}", falling back to memory`);
-                return MemoryVectorStore.fromDocuments(docs, embeddings);
-        }
-    }
-}
-//# sourceMappingURL=knowledge-store-factory.js.map

package/dist/lib/knowledge/knowledge-store-factory.js.map

@@ -1 +0,0 @@
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package/dist/lib/knowledge/knowledge-store-manager.d.ts

@@ -1,18 +0,0 @@
-import { type KnowledgeConfig, type KnowledgeStoreInstance } from './types.js';
-export declare class KnowledgeStoreManager {
-    private knowledgeDir;
-    private projectRoot;
-    private stores;
-    private configs;
-    constructor(knowledgeDir: string, projectRoot: string);
-    loadAll(): Promise<void>;
-    loadOne(filePath: string): Promise<KnowledgeConfig>;
-    initialize(name: string): Promise<KnowledgeStoreInstance>;
-    initializeAll(): Promise<void>;
-    get(name: string): KnowledgeStoreInstance | undefined;
-    getConfig(name: string): KnowledgeConfig | undefined;
-    list(): KnowledgeStoreInstance[];
-    listConfigs(): KnowledgeConfig[];
-    refresh(name: string): Promise<void>;
-}
-//# sourceMappingURL=knowledge-store-manager.d.ts.map

package/dist/lib/knowledge/knowledge-store-manager.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"knowledge-store-manager.d.ts","sourceRoot":"","sources":["../../../lib/knowledge/knowledge-store-manager.ts"],"names":[],"mappings":"AAIA,OAAO,EAAyB,KAAK,eAAe,EAA4D,KAAK,sBAAsB,EAAE,MAAM,YAAY,CAAC;AAOhK,qBAAa,qBAAqB;IAChC,OAAO,CAAC,YAAY,CAAS;IAC7B,OAAO,CAAC,WAAW,CAAS;IAC5B,OAAO,CAAC,MAAM,CAAkD;IAChE,OAAO,CAAC,OAAO,CAA2C;gBAE9C,YAAY,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM;IAK/C,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC;IASxB,OAAO,CAAC,QAAQ,EAAE,MAAM,GAAG,OAAO,CAAC,eAAe,CAAC;IAQnD,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,sBAAsB,CAAC;IA2CzD,aAAa,IAAI,OAAO,CAAC,IAAI,CAAC;IAMpC,GAAG,CAAC,IAAI,EAAE,MAAM,GAAG,sBAAsB,GAAG,SAAS;IAIrD,SAAS,CAAC,IAAI,EAAE,MAAM,GAAG,eAAe,GAAG,SAAS;IAIpD,IAAI,IAAI,sBAAsB,EAAE;IAIhC,WAAW,IAAI,eAAe,EAAE;IAI1B,OAAO,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;CAM3C"}

package/dist/lib/knowledge/knowledge-store-manager.js

@@ -1,98 +0,0 @@
-import * as fs from 'fs/promises';
-import * as path from 'path';
-import { glob } from 'glob';
-import { parse as parseYaml } from 'yaml';
-import { KnowledgeConfigSchema } from './types.js';
-import { KnowledgeStoreFactory } from './knowledge-store-factory.js';
-import { GraphRagFactory } from './graph-rag/graph-rag-factory.js';
-import { createLogger } from '../logger.js';
-const logger = createLogger('KnowledgeStore');
-export class KnowledgeStoreManager {
-    knowledgeDir;
-    projectRoot;
-    stores = new Map();
-    configs = new Map();
-    constructor(knowledgeDir, projectRoot) {
-        this.knowledgeDir = knowledgeDir;
-        this.projectRoot = projectRoot;
-    }
-    async loadAll() {
-        const files = await glob('**/*.knowledge.yaml', { cwd: this.knowledgeDir });
-        for (const file of files) {
-            const filePath = path.join(this.knowledgeDir, file);
-            await this.loadOne(filePath);
-        }
-    }
-    async loadOne(filePath) {
-        const content = await fs.readFile(filePath, 'utf-8');
-        const parsed = parseYaml(content);
-        const config = KnowledgeConfigSchema.parse(parsed);
-        this.configs.set(config.name, config);
-        return config;
-    }
-    async initialize(name) {
-        const existing = this.stores.get(name);
-        if (existing) {
-            logger.info(`"${name}" already initialized`);
-            return existing;
-        }
-        const config = this.configs.get(name);
-        if (!config) {
-            throw new Error(`Knowledge config not found: ${name}`);
-        }
-        logger.info(`Initializing "${name}" (kind: ${config.kind})...`);
-        // Log source-specific info
-        if (config.source.type === 'directory' || config.source.type === 'file') {
-            logger.info(`Source: ${config.source.path}, Pattern: ${'pattern' in config.source ? config.source.pattern || '*' : 'N/A'}`);
-        }
-        else if (config.source.type === 'database') {
-            logger.info(`Source: database (${config.source.connectionString.split('@')[1] || 'unknown'})`);
-        }
-        else if (config.source.type === 'web') {
-            logger.info(`Source: web (${config.source.url})`);
-        }
-        else if (config.source.type === 's3') {
-            logger.info(`Source: s3 (bucket: ${config.source.bucket})`);
-        }
-        try {
-            let store;
-            if (config.kind === 'graph-rag') {
-                store = await GraphRagFactory.create(config, this.projectRoot);
-            }
-            else {
-                store = await KnowledgeStoreFactory.create(config, this.projectRoot);
-            }
-            this.stores.set(name, store);
-            logger.info(`"${name}" initialized successfully`);
-            return store;
-        }
-        catch (error) {
-            logger.error(`Failed to initialize "${name}":`, error);
-            throw error;
-        }
-    }
-    async initializeAll() {
-        for (const name of this.configs.keys()) {
-            await this.initialize(name);
-        }
-    }
-    get(name) {
-        return this.stores.get(name);
-    }
-    getConfig(name) {
-        return this.configs.get(name);
-    }
-    list() {
-        return Array.from(this.stores.values());
-    }
-    listConfigs() {
-        return Array.from(this.configs.values());
-    }
-    async refresh(name) {
-        const store = this.stores.get(name);
-        if (store) {
-            await store.refresh();
-        }
-    }
-}
-//# sourceMappingURL=knowledge-store-manager.js.map

package/dist/lib/knowledge/knowledge-store-manager.js.map

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package/dist/lib/knowledge/loaders/s3-loader.d.ts

@@ -1,17 +0,0 @@
-import { Document } from '@langchain/core/documents';
-import type { S3SourceConfig } from '../types.js';
-/**
- * S3 document loader supporting AWS S3 and S3-compatible services (MinIO, Wasabi, etc.).
- * Downloads files to temporary storage and uses appropriate loaders based on file type.
- */
-export declare class S3Loader {
-    private config;
-    private s3Client;
-    constructor(config: S3SourceConfig);
-    load(): Promise<Document[]>;
-    private listObjects;
-    private loadFile;
-    private downloadToTemp;
-    private createLoader;
-}
-//# sourceMappingURL=s3-loader.d.ts.map

package/dist/lib/knowledge/loaders/s3-loader.d.ts.map

@@ -1 +0,0 @@
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