agent-nuvira 3.3.3 → 3.3.5

package/dist/tools/delegation-system.js.map

@@ -1 +1 @@
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package/dist/tools/extract/docx.d.ts

@@ -0,0 +1,27 @@
+/**
+ * DOCX text extraction via `mammoth`.
+ *
+ * A `.docx` is a ZIP of XML parts — reading it as UTF-8 and stripping tags
+ * (the old implementation) recovers the container, not the words. Mammoth parses
+ * the OOXML properly, so it resolves styles, numbering and tables, and reports the
+ * parts it could not represent.
+ *
+ * Mammoth's HTML output is then run through `htmlToText`, which keeps table cells
+ * on one line separated by ` | ` — the shape a reader needs to pair a value with
+ * its reference range. Mammoth's own markdown output was not used because it does
+ * not represent tables.
+ */
+export interface DocxExtractResult {
+    text: string;
+    /** Non-fatal problems mammoth reported (unsupported styles, etc.). */
+    warnings: string[];
+    truncated: boolean;
+}
+/** Thrown when the bytes are not a readable DOCX. */
+export declare class DocxExtractError extends Error {
+    constructor(message: string);
+}
+export declare function extractDocxText(bytes: Buffer, opts: {
+    maxChars: number;
+}): Promise<DocxExtractResult>;
+//# sourceMappingURL=docx.d.ts.map

package/dist/tools/extract/docx.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"docx.d.ts","sourceRoot":"","sources":["../../../src/tools/extract/docx.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAIH,MAAM,WAAW,iBAAiB;IAChC,IAAI,EAAE,MAAM,CAAC;IACb,sEAAsE;IACtE,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,SAAS,EAAE,OAAO,CAAC;CACpB;AAED,qDAAqD;AACrD,qBAAa,gBAAiB,SAAQ,KAAK;gBAC7B,OAAO,EAAE,MAAM;CAI5B;AAED,wBAAsB,eAAe,CACnC,KAAK,EAAE,MAAM,EACb,IAAI,EAAE;IAAE,QAAQ,EAAE,MAAM,CAAA;CAAE,GACzB,OAAO,CAAC,iBAAiB,CAAC,CAiC5B"}

package/dist/tools/extract/docx.js

@@ -0,0 +1,48 @@
+/**
+ * DOCX text extraction via `mammoth`.
+ *
+ * A `.docx` is a ZIP of XML parts — reading it as UTF-8 and stripping tags
+ * (the old implementation) recovers the container, not the words. Mammoth parses
+ * the OOXML properly, so it resolves styles, numbering and tables, and reports the
+ * parts it could not represent.
+ *
+ * Mammoth's HTML output is then run through `htmlToText`, which keeps table cells
+ * on one line separated by ` | ` — the shape a reader needs to pair a value with
+ * its reference range. Mammoth's own markdown output was not used because it does
+ * not represent tables.
+ */
+import { htmlToText } from './html-text.js';
+/** Thrown when the bytes are not a readable DOCX. */
+export class DocxExtractError extends Error {
+    constructor(message) {
+        super(message);
+        this.name = 'DocxExtractError';
+    }
+}
+export async function extractDocxText(bytes, opts) {
+    const mod = await import('mammoth');
+    const convertToHtml = mod.default?.convertToHtml
+        ?? mod.convertToHtml;
+    if (typeof convertToHtml !== 'function') {
+        throw new DocxExtractError('The DOCX reader (mammoth) did not load correctly.');
+    }
+    let value;
+    let messages;
+    try {
+        const result = await convertToHtml({ buffer: bytes });
+        value = result.value;
+        messages = result.messages ?? [];
+    }
+    catch (err) {
+        const msg = err instanceof Error ? err.message : String(err);
+        throw new DocxExtractError(`The DOCX could not be read: ${msg}`);
+    }
+    const full = htmlToText(value);
+    const truncated = full.length > opts.maxChars;
+    return {
+        text: truncated ? `${full.slice(0, opts.maxChars)}\n…[truncated]` : full,
+        warnings: messages.map((m) => (typeof m === 'string' ? m : JSON.stringify(m))).slice(0, 10),
+        truncated,
+    };
+}
+//# sourceMappingURL=docx.js.map

package/dist/tools/extract/docx.js.map

@@ -0,0 +1 @@
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package/dist/tools/extract/html-text.d.ts

@@ -0,0 +1,27 @@
+/**
+ * Structure-preserving HTML → text, plus the entity decoding the XML formats share.
+ *
+ * This is deliberately NOT `replace(/<[^>]+>/g, ' ')`. Flattening tags to spaces
+ * (what `extractHTML` used to do) throws away the row/column structure — the one
+ * thing a table-shaped document is made of. A lab report read that way gives the
+ * model every value with no idea which reference range it belongs to, and an
+ * agent asked to assess it is left guessing at the pairing.
+ *
+ * So cells stay on one line separated by ` | `, rows become lines, paragraphs
+ * become lines, and entities are decoded. Lossy in layout terms, faithful in
+ * value-to-value terms — which is the pairing that matters.
+ */
+/**
+ * Decode XML/HTML entities: named, decimal (`&#65;`) and hex (`&#x41;`).
+ * Exported because the PPTX reader needs the same decoding for `<a:t>` runs.
+ */
+export declare function decodeEntities(input: string): string;
+/**
+ * Convert an HTML fragment to text, keeping tabular structure.
+ *
+ * Block-level closes emit a newline; cell closes emit a column separator; `<li>`
+ * becomes a bullet. Runs of spaces are collapsed (tags leave gaps behind) and
+ * blank lines are collapsed to at most one.
+ */
+export declare function htmlToText(html: string): string;
+//# sourceMappingURL=html-text.d.ts.map

package/dist/tools/extract/html-text.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/extract/html-text.js

@@ -0,0 +1,86 @@
+/**
+ * Structure-preserving HTML → text, plus the entity decoding the XML formats share.
+ *
+ * This is deliberately NOT `replace(/<[^>]+>/g, ' ')`. Flattening tags to spaces
+ * (what `extractHTML` used to do) throws away the row/column structure — the one
+ * thing a table-shaped document is made of. A lab report read that way gives the
+ * model every value with no idea which reference range it belongs to, and an
+ * agent asked to assess it is left guessing at the pairing.
+ *
+ * So cells stay on one line separated by ` | `, rows become lines, paragraphs
+ * become lines, and entities are decoded. Lossy in layout terms, faithful in
+ * value-to-value terms — which is the pairing that matters.
+ */
+/** Named entities that actually appear in document XML/HTML. */
+const NAMED_ENTITIES = {
+    amp: '&',
+    lt: '<',
+    gt: '>',
+    quot: '"',
+    apos: "'",
+    nbsp: ' ',
+    '#39': "'",
+    mdash: '—',
+    ndash: '–',
+    hellip: '…',
+    rsquo: '\u2019',
+    lsquo: '\u2018',
+    rdquo: '\u201d',
+    ldquo: '\u201c',
+};
+/**
+ * Decode XML/HTML entities: named, decimal (`&#65;`) and hex (`&#x41;`).
+ * Exported because the PPTX reader needs the same decoding for `<a:t>` runs.
+ */
+export function decodeEntities(input) {
+    return input.replace(/&(#x?[0-9a-fA-F]+|[a-zA-Z]+);/g, (whole, body) => {
+        if (body.startsWith('#x') || body.startsWith('#X')) {
+            const cp = Number.parseInt(body.slice(2), 16);
+            return Number.isFinite(cp) && cp > 0 ? String.fromCodePoint(cp) : whole;
+        }
+        if (body.startsWith('#')) {
+            const cp = Number.parseInt(body.slice(1), 10);
+            return Number.isFinite(cp) && cp > 0 ? String.fromCodePoint(cp) : whole;
+        }
+        const named = NAMED_ENTITIES[body.toLowerCase()];
+        return named ?? whole;
+    });
+}
+/**
+ * Convert an HTML fragment to text, keeping tabular structure.
+ *
+ * Block-level closes emit a newline; cell closes emit a column separator; `<li>`
+ * becomes a bullet. Runs of spaces are collapsed (tags leave gaps behind) and
+ * blank lines are collapsed to at most one.
+ */
+export function htmlToText(html) {
+    let s = html
+        .replace(/<script[^>]*>[\s\S]*?<\/script>/gi, '')
+        .replace(/<style[^>]*>[\s\S]*?<\/style>/gi, '')
+        .replace(/<!--[\s\S]*?-->/g, '');
+    // Structural replacements, most specific first.
+    s = s
+        .replace(/<br\s*\/?>/gi, '\n')
+        .replace(/<\/(td|th)\s*>/gi, ' | ')
+        .replace(/<li[^>]*>/gi, '\n- ')
+        .replace(/<\/(p|div|tr|li|h[1-6]|blockquote|pre|section|article|header|footer|figcaption)\s*>/gi, '\n');
+    // Everything else is markup; drop it.
+    s = s.replace(/<[^>]+>/g, '');
+    // Decode AFTER tag removal so an encoded `&lt;b&gt;` in the document is not
+    // mistaken for markup.
+    s = decodeEntities(s);
+    // A block INSIDE a cell (mammoth emits `<td><p>Glucose</p></td>`) leaves the cell
+    // separator on the following line. Pull it back up, so the cell's text and its
+    // separator stay on one line — otherwise every table row reads as its cells on
+    // separate lines and the value/column pairing is lost.
+    s = s
+        .replace(/\n[ \t]*\|/g, ' | ') // newline before a separator
+        .replace(/\|[ \t]*\n/g, ' |\n'); // separator before a newline (row end)
+    return s
+        .split('\n')
+        .map((line) => line.replace(/[ \t\u00a0]+/g, ' ').replace(/\s*\|\s*$/, '').trim())
+        .join('\n')
+        .replace(/\n{3,}/g, '\n\n')
+        .trim();
+}
+//# sourceMappingURL=html-text.js.map

package/dist/tools/extract/html-text.js.map

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package/dist/tools/extract/pdf-ocr.d.ts

@@ -0,0 +1,58 @@
+/**
+ * Scanned-PDF OCR route (P1.4) — text recovery for a PDF with no text layer.
+ *
+ * Rendering a PDF page to a raster needs a canvas. pdf.js in Node renders to a canvas
+ * it does not ship, so the options were a native canvas package (a platform binary on
+ * every install, for a path most documents never need) or an external rasteriser.
+ * This uses Poppler's `pdftoppm` / `pdftocairo` **when it exists on PATH** — the same
+ * `binaryOnPath` probe idiom `modality/browser.ts` uses for Playwright — and refuses
+ * with `not_configured` when it does not, naming what to install.
+ *
+ * It is deliberately OPT-IN (the `ocr` flag on read_extract) rather than automatic:
+ * this path costs a vision-model call per page and produces transcribed, not parsed,
+ * text. A caller that did not ask for that should not silently pay for it — and the
+ * refusal for a scanned PDF says exactly how to ask.
+ *
+ * The text recovered here is labelled (`metadata.ocr: true` plus a warning), because
+ * a transcription is a different kind of evidence from an extraction: it can drop or
+ * misread a digit, and the model reading a lab value needs to know that.
+ */
+import { type VisionOptions } from '../modality/vision.js';
+/** Bounded so a 40-page scan cannot turn into 40 vision calls on one tool step. */
+export declare const MAX_OCR_PAGES = 8;
+export interface PdfOcrOptions {
+    /** Injectable renderer probe (tests pass one; production uses PATH). */
+    renderProbe?: (bin: string) => boolean;
+    /** Vision backend options (probe is injectable for tests). */
+    vision?: VisionOptions;
+    /** Max pages to transcribe (default MAX_OCR_PAGES). */
+    maxPages?: number;
+    /** Raster resolution (default 150 dpi — enough for body text without huge images). */
+    dpi?: number;
+}
+/** The rasteriser this machine can use, or null. */
+export declare function findRenderer(probe?: (bin: string) => boolean): string | null;
+/** Whether the OCR route could run here: a rasteriser AND a vision backend. */
+export declare function isPdfOcrAvailable(opts?: PdfOcrOptions): Promise<boolean>;
+export interface PdfOcrResult {
+    text: string;
+    /** Pages actually transcribed. */
+    pagesTranscribed: number;
+    /** Pages the document had, when the caller knows it. */
+    truncated: boolean;
+    /** The renderer used, for provenance. */
+    renderer: string;
+}
+export declare class PdfOcrError extends Error {
+    readonly code: 'not_configured' | 'unavailable';
+    constructor(message: string, code: 'not_configured' | 'unavailable');
+}
+/**
+ * Render up to `maxPages` pages of `pdfPath` and transcribe them with the vision
+ * backend, returning the concatenated text.
+ *
+ * Throws `PdfOcrError` with a typed code when a prerequisite is missing, so the
+ * caller can turn it into a refusal with alternatives rather than a bare message.
+ */
+export declare function ocrScannedPdf(pdfPath: string, totalPages: number, opts?: PdfOcrOptions): Promise<PdfOcrResult>;
+//# sourceMappingURL=pdf-ocr.d.ts.map

package/dist/tools/extract/pdf-ocr.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/extract/pdf-ocr.js

@@ -0,0 +1,116 @@
+/**
+ * Scanned-PDF OCR route (P1.4) — text recovery for a PDF with no text layer.
+ *
+ * Rendering a PDF page to a raster needs a canvas. pdf.js in Node renders to a canvas
+ * it does not ship, so the options were a native canvas package (a platform binary on
+ * every install, for a path most documents never need) or an external rasteriser.
+ * This uses Poppler's `pdftoppm` / `pdftocairo` **when it exists on PATH** — the same
+ * `binaryOnPath` probe idiom `modality/browser.ts` uses for Playwright — and refuses
+ * with `not_configured` when it does not, naming what to install.
+ *
+ * It is deliberately OPT-IN (the `ocr` flag on read_extract) rather than automatic:
+ * this path costs a vision-model call per page and produces transcribed, not parsed,
+ * text. A caller that did not ask for that should not silently pay for it — and the
+ * refusal for a scanned PDF says exactly how to ask.
+ *
+ * The text recovered here is labelled (`metadata.ocr: true` plus a warning), because
+ * a transcription is a different kind of evidence from an extraction: it can drop or
+ * misread a digit, and the model reading a lab value needs to know that.
+ */
+import { execFile } from 'node:child_process';
+import { promisify } from 'node:util';
+import { readdirSync, rmSync } from 'node:fs';
+import { join } from 'node:path';
+import { artifactsDir, binaryOnPath } from '../modality/shared.js';
+import { describeImage, isVisionAvailable } from '../modality/vision.js';
+const execFileAsync = promisify(execFile);
+/** Rasterisers, in preference order. `pdftocairo` gives PNG directly on more builds. */
+const RENDERERS = [
+    { bin: 'pdftoppm', args: (r) => ['-r', String(r), '-png'] },
+    { bin: 'pdftocairo', args: (r) => ['-png', '-r', String(r)] },
+];
+/** Prompt for OCR-via-vision-model: the text ONLY, nothing else. */
+const OCR_PAGE_PROMPT = 'Transcribe ALL visible text in this image exactly as it appears, preserving line breaks and table '
+    + 'rows/columns. Output only the transcription, with no preamble and no commentary.';
+/** Bounded so a 40-page scan cannot turn into 40 vision calls on one tool step. */
+export const MAX_OCR_PAGES = 8;
+/** The rasteriser this machine can use, or null. */
+export function findRenderer(probe = binaryOnPath) {
+    for (const r of RENDERERS) {
+        if (probe(r.bin))
+            return r.bin;
+    }
+    return null;
+}
+/** Whether the OCR route could run here: a rasteriser AND a vision backend. */
+export async function isPdfOcrAvailable(opts = {}) {
+    const probe = opts.renderProbe ?? binaryOnPath;
+    if (findRenderer(probe) === null)
+        return false;
+    return isVisionAvailable(opts.vision ?? {});
+}
+export class PdfOcrError extends Error {
+    code;
+    constructor(message, code) {
+        super(message);
+        this.code = code;
+        this.name = 'PdfOcrError';
+    }
+}
+/**
+ * Render up to `maxPages` pages of `pdfPath` and transcribe them with the vision
+ * backend, returning the concatenated text.
+ *
+ * Throws `PdfOcrError` with a typed code when a prerequisite is missing, so the
+ * caller can turn it into a refusal with alternatives rather than a bare message.
+ */
+export async function ocrScannedPdf(pdfPath, totalPages, opts = {}) {
+    const probe = opts.renderProbe ?? binaryOnPath;
+    const renderer = findRenderer(probe);
+    if (renderer === null) {
+        throw new PdfOcrError('No PDF rasteriser is available, so the pages cannot be turned into images for OCR '
+            + '(install Poppler: `pdftoppm` / `pdftocairo`).', 'not_configured');
+    }
+    if (!(await isVisionAvailable(opts.vision ?? {}))) {
+        throw new PdfOcrError('No vision backend is configured (a local Ollama vision model such as llava/llama3.2-vision, '
+            + 'or a Gemini API key), so there is nothing to transcribe the rendered pages with.', 'not_configured');
+    }
+    const dpi = opts.dpi ?? 150;
+    const maxPages = opts.maxPages ?? MAX_OCR_PAGES;
+    const pages = Math.max(1, Math.min(totalPages || 1, maxPages));
+    const dir = artifactsDir('ocr');
+    const prefix = join(dir, `scan-${Date.now().toString(36)}`);
+    try {
+        const spec = RENDERERS.find((r) => r.bin === renderer);
+        await execFileAsync(renderer, [...spec.args(dpi), '-f', '1', '-l', String(pages), pdfPath, prefix], { timeout: 120_000, maxBuffer: 8 * 1024 * 1024 });
+        const images = readdirSync(dir)
+            .filter((f) => f.startsWith(`${prefix.split('/').pop()}`) && /\.(png|jpe?g)$/i.test(f))
+            .sort()
+            .map((f) => join(dir, f));
+        if (images.length === 0) {
+            throw new PdfOcrError('The rasteriser produced no images for this PDF.', 'unavailable');
+        }
+        const parts = [];
+        for (let i = 0; i < images.length; i++) {
+            const described = await describeImage(images[i], OCR_PAGE_PROMPT, opts.vision ?? {});
+            if (!described.ok || !described.description) {
+                throw new PdfOcrError(`The vision backend could not read page ${i + 1}: ${described.error ?? 'no output'}`, 'unavailable');
+            }
+            parts.push(`[Page ${i + 1} — transcribed by OCR]\n${described.description.trim()}`);
+        }
+        return {
+            text: parts.join('\n\n'),
+            pagesTranscribed: images.length,
+            truncated: (totalPages || images.length) > images.length,
+            renderer,
+        };
+    }
+    finally {
+        // The rendered pages are intermediates — a scan's images should not accumulate
+        // in the artifacts dir after the text has been recovered.
+        for (const f of readdirSync(dir).filter((n) => n.startsWith(prefix.split('/').pop()))) {
+            rmSync(join(dir, f), { force: true });
+        }
+    }
+}
+//# sourceMappingURL=pdf-ocr.js.map

package/dist/tools/extract/pdf-ocr.js.map

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package/dist/tools/extract/pdf.d.ts

@@ -0,0 +1,65 @@
+/**
+ * PDF text extraction — real parsing, table rows preserved.
+ *
+ * Why a parser is required (and why the previous implementation could never work):
+ * a PDF stores its glyphs inside FlateDecode-compressed content streams, positioned
+ * by a text matrix, with the glyph codes mapped back to characters through the
+ * font's encoding/ToUnicode CMap. Reading the file as UTF-8 and stripping
+ * non-printable bytes therefore recovers the *container*, never the text — which
+ * is what `read_extract` used to present as a successful extraction.
+ *
+ * `pdfjs-dist/legacy/build/pdf.mjs` is used rather than the modern build: pdf.js
+ * itself prints "Please use the `legacy` build in Node.js environments" for the
+ * default entry, and the legacy build is the one that avoids browser-only globals.
+ *
+ * Table structure is reconstructed from geometry, because a lab report is a table
+ * and the value/reference-range pairing is the whole point of reading it:
+ *   - items are grouped into lines by their baseline `y` (transform[5]);
+ *   - items on a line are ordered by `x` (transform[4]);
+ *   - the horizontal gap between consecutive items decides the separator —
+ *     nothing (a run split mid-word by kerning), a space, or ` | ` (a column
+ *     boundary).
+ * A page with no text items at all is reported as having no text layer rather
+ * than returned as empty text, so a scanned report is a typed refusal instead of
+ * a silent blank.
+ */
+/** One text item reduced to what line reconstruction needs. */
+interface PositionedItem {
+    str: string;
+    x: number;
+    y: number;
+    width: number;
+    size: number;
+}
+export interface PdfExtractResult {
+    text: string;
+    pages: number;
+    /** Pages that yielded at least one non-whitespace text item. */
+    pagesWithText: number;
+    /** Page numbers (1-based) with no text layer — scanned/image-only pages. */
+    pagesWithoutText: number[];
+    truncated: boolean;
+}
+/** Thrown for inputs pdf.js parsed but could not read (encrypted, corrupt). */
+export declare class PdfExtractError extends Error {
+    readonly encrypted: boolean;
+    constructor(message: string, encrypted?: boolean);
+}
+/** Bump when the reconstruction rules change. */
+export declare const PDF_EXTRACTOR_VERSION = 1;
+/**
+ * Extract text from A4-ish PDF bytes, page by page.
+ *
+ * `maxChars` bounds the returned text; `truncated` says whether it was hit, so a
+ * caller can never mistake a partial document for the whole one.
+ */
+export declare function extractPdfText(bytes: Uint8Array, opts: {
+    maxChars: number;
+}): Promise<PdfExtractResult>;
+/**
+ * Join the runs of one line, choosing a separator from the gap between them.
+ * Gap thresholds are expressed in multiples of the glyph size (em).
+ */
+export declare function joinLine(items: PositionedItem[]): string;
+export {};
+//# sourceMappingURL=pdf.d.ts.map

package/dist/tools/extract/pdf.d.ts.map

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