agent-nuvira 3.3.11 → 3.3.13

package/dist/tools/remediation-ladder.d.ts

@@ -0,0 +1,91 @@
+/**
+ * Remediation ladder — a recognised toolchain failure gets a KNOWN fix instead
+ * of another exploration loop.
+ *
+ * WHY (A4). On the supervised `cal` Android run (2026-10-05) the agent
+ * diagnosed the real cause of a Gradle failure correctly — Capacitor 8 compiles
+ * at `JavaVersion.VERSION_21`, the environment had JDK 17 — and then stopped:
+ * it retried the same command with small variations and closed the turn telling
+ * the user to install JDK 21 themselves. A supervisor fixed the same tree in
+ * ~30 s with a project-local edit (`android/local.properties` + a JDK-21
+ * `JAVA_HOME`). The failure was not environmental in the sense of "impossible";
+ * it was a fix the agent could see and did not take.
+ *
+ * The ladder closes that gap with a SMALL, DECLARED map: error signature →
+ * what it means → the bounded fix, split into the part that belongs to THIS
+ * project (a file write, a chmod, an env var scoped to the command) and the
+ * part that is the user's decision (installing a system JDK). By DEFAULT it is
+ * advisory: the note is appended to the failed tool result, so the model takes
+ * the fix with the same tools it already has. A very small subset may carry a
+ * machine-readable safe action (see AUTO-APPLY below), but nothing is ever
+ * changed without an explicit opt-in — a remediation the agent cannot see is
+ * indistinguishable from a bug, and the agent must stay able to reason about
+ * what changed.
+ *
+ * Rules are intentionally a handful of high-signal signatures, not a general
+ * log classifier: a wrong "known fix" is worse than none.
+ *
+ * AUTO-APPLY (opt-in). A subset of the fixes is a single, idempotent,
+ * project-local file operation that cannot strand the user — `chmod +x` on the
+ * wrapper, writing `android/local.properties`. For those a rule may also
+ * declare a machine-readable {@link AutoFixAction}. When the run opts in
+ * (`NUVIRA_REMEDIATE=auto`) the fix is applied to the workspace and the note
+ * reports exactly what changed; by default the note is advisory only. Anything
+ * that needs a discovery or a per-run env var stays advisory — the agent can
+ * still see it and take it.
+ */
+export interface Remediation {
+    /** Stable id (telemetry / tests). */
+    id: string;
+    /** What this signature means, in one line. */
+    summary: string;
+    /** Bounded steps, in order. Concrete commands/paths, not advice. */
+    fix: string[];
+    /**
+     * `project-local` steps are the agent's job; `system` steps change the
+     * machine and may need the user. Both are shown; only the distinction is.
+     */
+    scope: 'project-local' | 'system';
+    /**
+     * Safe, idempotent, project-local operations a machine may take on the agent's
+     * behalf when auto-apply is enabled. Absent means advisory-only (the default).
+     */
+    autoFix?: AutoFixAction[];
+}
+/** A no-surprise filesystem operation confined to the project workspace. */
+export type AutoFixAction = {
+    kind: 'chmod-exec';
+    path: string;
+} | {
+    kind: 'write-file';
+    path: string;
+    content: string;
+};
+/**
+ * Diagnose a FAILED command. Returns null when the output matches no known
+ * signature — the ladder must never invent a fix for an unknown failure.
+ */
+export declare function diagnoseFailure(command: string, output: string, cwd?: string, env?: NodeJS.ProcessEnv): Remediation | null;
+/** Is auto-apply requested for this run? Off unless explicitly opted in. */
+export declare function remediationAutoApplyEnabled(env?: NodeJS.ProcessEnv): boolean;
+export interface AutoApplyResult {
+    /** Human strings for the operations that changed the workspace. */
+    applied: string[];
+    /** Operations that were already satisfied or could not be taken safely. */
+    skipped: string[];
+}
+/**
+ * Apply the remediations's safe auto-fixes. Every operation is idempotent and
+ * confined to the workspace; anything that fails is reported as skipped, never
+ * thrown — a remediation must not break the tool result it annotates.
+ */
+export declare function applyRemediationAutoFixes(r: Remediation): AutoApplyResult;
+/** Render the auto-apply outcome as a note appended after the advisory fix. */
+export declare function formatAutoApply(result: AutoApplyResult): string;
+/**
+ * Render a remediation as the note appended to the failed tool result. Plain
+ * text (not markdown headers) so it reads the same in a terminal, a transcript,
+ * and a model prompt.
+ */
+export declare function formatRemediation(r: Remediation): string;
+//# sourceMappingURL=remediation-ladder.d.ts.map

package/dist/tools/remediation-ladder.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/remediation-ladder.js

@@ -0,0 +1,308 @@
+/**
+ * Remediation ladder — a recognised toolchain failure gets a KNOWN fix instead
+ * of another exploration loop.
+ *
+ * WHY (A4). On the supervised `cal` Android run (2026-10-05) the agent
+ * diagnosed the real cause of a Gradle failure correctly — Capacitor 8 compiles
+ * at `JavaVersion.VERSION_21`, the environment had JDK 17 — and then stopped:
+ * it retried the same command with small variations and closed the turn telling
+ * the user to install JDK 21 themselves. A supervisor fixed the same tree in
+ * ~30 s with a project-local edit (`android/local.properties` + a JDK-21
+ * `JAVA_HOME`). The failure was not environmental in the sense of "impossible";
+ * it was a fix the agent could see and did not take.
+ *
+ * The ladder closes that gap with a SMALL, DECLARED map: error signature →
+ * what it means → the bounded fix, split into the part that belongs to THIS
+ * project (a file write, a chmod, an env var scoped to the command) and the
+ * part that is the user's decision (installing a system JDK). By DEFAULT it is
+ * advisory: the note is appended to the failed tool result, so the model takes
+ * the fix with the same tools it already has. A very small subset may carry a
+ * machine-readable safe action (see AUTO-APPLY below), but nothing is ever
+ * changed without an explicit opt-in — a remediation the agent cannot see is
+ * indistinguishable from a bug, and the agent must stay able to reason about
+ * what changed.
+ *
+ * Rules are intentionally a handful of high-signal signatures, not a general
+ * log classifier: a wrong "known fix" is worse than none.
+ *
+ * AUTO-APPLY (opt-in). A subset of the fixes is a single, idempotent,
+ * project-local file operation that cannot strand the user — `chmod +x` on the
+ * wrapper, writing `android/local.properties`. For those a rule may also
+ * declare a machine-readable {@link AutoFixAction}. When the run opts in
+ * (`NUVIRA_REMEDIATE=auto`) the fix is applied to the workspace and the note
+ * reports exactly what changed; by default the note is advisory only. Anything
+ * that needs a discovery or a per-run env var stays advisory — the agent can
+ * still see it and take it.
+ */
+import { chmodSync, existsSync, mkdirSync, readFileSync, statSync, writeFileSync } from 'node:fs';
+import { dirname, join } from 'node:path';
+/** Filesystem seam so rules stay testable without touching the real tree. */
+const defaultFs = { existsSync, statSync };
+/**
+ * Find the Gradle wrapper script relative to the project root, if it exists.
+ * The `cal` tree keeps it under `android/`; a bare Android project keeps it at
+ * the root, so both are checked (most specific first).
+ */
+function findGradlew(cwd) {
+    if (!cwd)
+        return null;
+    for (const rel of ['android/gradlew', 'gradlew']) {
+        const abs = join(cwd, rel);
+        try {
+            if (defaultFs.existsSync(abs) && defaultFs.statSync(abs).isFile())
+                return abs;
+        }
+        catch {
+            /* unreadable — treat as absent */
+        }
+    }
+    return null;
+}
+/**
+ * Where the Android SDK lives, if this machine merely has it configured. Used
+ * to write `android/local.properties`, which is the whole of the SDK-location
+ * failure. Returns null when no path can be found, so nothing is written.
+ */
+function findAndroidSdk(cwd, env) {
+    const explicit = env.ANDROID_HOME || env.ANDROID_SDK_ROOT;
+    if (explicit && existsSync(explicit))
+        return explicit;
+    const home = env.HOME || '';
+    const candidates = [
+        join(home, 'android-toolchain/android-sdk'),
+        join(home, 'Library/Android/sdk'),
+        join(home, 'Android/Sdk'),
+        ...(cwd ? [join(cwd, 'android-sdk'), join(cwd, '.android-sdk')] : []),
+    ];
+    for (const c of candidates) {
+        try {
+            // A real SDK has a `platform-tools` (or `platforms`) directory.
+            if (c && existsSync(join(c, 'platform-tools')))
+                return c;
+        }
+        catch {
+            /* ignore */
+        }
+    }
+    return null;
+}
+const ANDROID_JDK_LINE = /requires\s+java\s+(1[1-9]|[2-9]\d)|java\s*21|VERSION_21|Unsupported class file major version/i;
+/**
+ * The rules, most specific first. Each `test` is deliberately narrow so the
+ * ladder fires only on a signature it can actually help with.
+ */
+const RULES = [
+    {
+        id: 'jdk-version',
+        test: (cmd, out) => ANDROID_JDK_LINE.test(out) ||
+            /(android|gradle|sdk)/i.test(cmd) && /(java|jdk).*(version|home|17|21)|could not determine java version/i.test(out),
+        build: () => ({
+            id: 'jdk-version',
+            summary: 'This build needs a newer JDK than the one on PATH (for example Capacitor/AGP 8 requires JDK 21, not 17).',
+            fix: [
+                'Find a JDK that satisfies the required version (e.g. `~/android-toolchain/jdk21/Contents/Home`, `/usr/libexec/java_home -v 21`, or `ls /usr/lib/jvm`).',
+                'Point THIS build at it without changing the user’s default: re-run the command with `JAVA_HOME=<jdk> PATH="$JAVA_HOME/bin:$PATH" <command>` (project-local, do this now).',
+                'If the JDK is not installed at all, install it (e.g. `brew install --cask temurin@21`) — this changes the machine, so say so rather than blocking on it.',
+                'For Gradle you can also pin it in the project: add `org.gradle.java.home=<jdk>` to `android/gradle.properties` (project-local, survives the turn).',
+                'Do NOT retry the same command with the same JAVA_HOME — the version cannot change by retrying.',
+            ],
+            scope: 'project-local',
+        }),
+    },
+    {
+        id: 'android-sdk-location',
+        test: (_cmd, out) => /SDK location not found|ANDROID_HOME|ANDROID_SDK_ROOT|sdk\.dir|accepted the SDK license|licenses? .* not accepted/i.test(out),
+        build: ({ cwd, env }) => {
+            const sdk = findAndroidSdk(cwd, env);
+            const localProps = cwd ? join(cwd, 'android/local.properties') : '';
+            return {
+                id: 'android-sdk-location',
+                summary: 'Gradle cannot find (or is not allowed to use) the Android SDK.',
+                ...(sdk && localProps
+                    ? { autoFix: [{ kind: 'write-file', path: localProps, content: `sdk.dir=${sdk}\n` }] }
+                    : {}),
+                fix: [
+                    'Create `android/local.properties` (project-local) containing `sdk.dir=<path-to-Android-SDK>` — this is the whole of the SDK-location failure.',
+                    'Install the required components if missing: `sdkmanager "platforms;android-34" "build-tools;34.0.0" "platform-tools"`.',
+                    'Accept pending licences: `yes | sdkmanager --licenses`.',
+                    'Re-run `./gradlew assembleDebug` (or the original build) in the SAME directory.',
+                ],
+                scope: 'project-local',
+            };
+        },
+    },
+    {
+        id: 'gradlew-not-executable',
+        test: (cmd, out) => /gradlew/i.test(cmd) && /Permission denied|not executable/i.test(out),
+        build: ({ cwd }) => {
+            const gradlew = findGradlew(cwd);
+            return {
+                id: 'gradlew-not-executable',
+                summary: 'The Gradle wrapper script is not executable in this checkout.',
+                ...(gradlew ? { autoFix: [{ kind: 'chmod-exec', path: gradlew }] } : {}),
+                fix: [
+                    'Run `chmod +x android/gradlew` (project-local), then re-run the build.',
+                    'Alternatively invoke it through the shell: `sh android/gradlew assembleDebug`.',
+                ],
+                scope: 'project-local',
+            };
+        },
+    },
+    {
+        id: 'toolchain-missing',
+        test: (_cmd, out) => /\b(java|javac|gradle|adb|sdkmanager|kotlinc)\b.*(command not found|not recognized as)/i.test(out),
+        build: () => ({
+            id: 'toolchain-missing',
+            summary: 'A build tool is not installed (or not on PATH).',
+            fix: [
+                'Check whether the tool exists somewhere first (`which java`, `ls ~/android-toolchain`).',
+                'Install the missing component, or add its path to PATH for THIS command (`PATH="$HOME/android-toolchain/android-sdk/platform-tools:$PATH" <command>`) — project-local for the run.',
+                'Installing a toolchain system-wide is the user’s decision; state it plainly if it is genuinely required.',
+            ],
+            scope: 'project-local',
+        }),
+    },
+    {
+        id: 'python-env',
+        test: (_cmd, out) => /externally-managed-environment|No module named|Could not find a version that satisfies|python[0-9.]*: (command )?not found/i.test(out),
+        build: () => ({
+            id: 'python-env',
+            summary: 'Python dependencies are missing or the environment is externally managed.',
+            fix: [
+                'Create a project venv: `python3 -m venv .venv` (project-local).',
+                'Install into it: `.venv/bin/pip install -r requirements.txt` (or the named package).',
+                'Re-run the original command with the venv active: `.venv/bin/python <command>`.',
+                'Do NOT `pip install --break-system-packages` — the venv is the fix.',
+            ],
+            scope: 'project-local',
+        }),
+    },
+    {
+        id: 'node-engines',
+        test: (_cmd, out) => /EBADENGINE|Unsupported engine|requires Node(\.js)? (version )?|node: (command )?not found/i.test(out),
+        build: () => ({
+            id: 'node-engines',
+            summary: 'The installed Node/npm does not satisfy this project’s engine requirement.',
+            fix: [
+                'Read the required version from `package.json` (`engines`).',
+                'Select a matching runtime for THIS command (e.g. `nvm use 20`, `fnm use`, or point PATH at the right install) — project-local for the run.',
+                'If no matching runtime exists, installing one is the user’s decision — say so instead of retrying.',
+            ],
+            scope: 'project-local',
+        }),
+    },
+    {
+        id: 'docker-daemon',
+        test: (_cmd, out) => /Cannot connect to the Docker daemon|Is the docker daemon running/i.test(out),
+        build: () => ({
+            id: 'docker-daemon',
+            summary: 'Docker is installed but its daemon is not running.',
+            fix: [
+                'Start it: `open -a Docker` (macOS), `sudo systemctl start docker` (Linux), or start Docker Desktop.',
+                'Wait for `docker info` to succeed, then re-run the original command.',
+                'If it cannot be started, choose a non-container path for the build rather than retrying.',
+            ],
+            scope: 'system',
+        }),
+    },
+];
+/**
+ * Diagnose a FAILED command. Returns null when the output matches no known
+ * signature — the ladder must never invent a fix for an unknown failure.
+ */
+export function diagnoseFailure(command, output, cwd, env = process.env) {
+    const cmd = String(command ?? '');
+    const out = String(output ?? '');
+    if (!out)
+        return null;
+    for (const rule of RULES) {
+        try {
+            if (rule.test(cmd, out))
+                return rule.build({ command: cmd, output: out, cwd, env });
+        }
+        catch {
+            // A rule must never break the tool result it is annotating.
+            continue;
+        }
+    }
+    return null;
+}
+/** Is auto-apply requested for this run? Off unless explicitly opted in. */
+export function remediationAutoApplyEnabled(env = process.env) {
+    return (env.NUVIRA_REMEDIATE || '').toLowerCase() === 'auto';
+}
+/**
+ * Apply the remediations's safe auto-fixes. Every operation is idempotent and
+ * confined to the workspace; anything that fails is reported as skipped, never
+ * thrown — a remediation must not break the tool result it annotates.
+ */
+export function applyRemediationAutoFixes(r) {
+    const applied = [];
+    const skipped = [];
+    for (const action of r.autoFix ?? []) {
+        try {
+            if (action.kind === 'chmod-exec') {
+                if (!existsSync(action.path)) {
+                    skipped.push(`chmod +x ${action.path} (file not found)`);
+                    continue;
+                }
+                const mode = statSync(action.path).mode;
+                if (mode & 0o111) {
+                    skipped.push(`chmod +x ${action.path} (already executable)`);
+                    continue;
+                }
+                chmodSync(action.path, 0o755);
+                applied.push(`chmod +x ${action.path}`);
+            }
+            else {
+                // write-file: never clobber a file that already says what we would say.
+                if (existsSync(action.path)) {
+                    const current = readFileSync(action.path, 'utf-8');
+                    const wanted = action.content.trim();
+                    if (current.includes(wanted)) {
+                        skipped.push(`${action.path} (already set)`);
+                        continue;
+                    }
+                    // Append rather than overwrite — other keys in the file are the user's.
+                    const sep = current.endsWith('\n') || current === '' ? '' : '\n';
+                    writeFileSync(action.path, `${current}${sep}${action.content}`);
+                    applied.push(`${action.path} (+ ${wanted})`);
+                    continue;
+                }
+                mkdirSync(dirname(action.path), { recursive: true });
+                writeFileSync(action.path, action.content);
+                applied.push(`${action.path} (created)`);
+            }
+        }
+        catch (e) {
+            skipped.push(`${action.kind} ${'path' in action ? action.path : ''} (${e.message})`);
+        }
+    }
+    return { applied, skipped };
+}
+/** Render the auto-apply outcome as a note appended after the advisory fix. */
+export function formatAutoApply(result) {
+    if (result.applied.length === 0 && result.skipped.length === 0)
+        return '';
+    const lines = ['⚙️  Auto-applied safe project-local fix(es):'];
+    for (const a of result.applied)
+        lines.push(`   ✓ ${a}`);
+    for (const s of result.skipped)
+        lines.push(`   – ${s}`);
+    lines.push('   (NUVIRA_REMEDIATE=auto; re-run the original command now.)');
+    return lines.join('\n');
+}
+/**
+ * Render a remediation as the note appended to the failed tool result. Plain
+ * text (not markdown headers) so it reads the same in a terminal, a transcript,
+ * and a model prompt.
+ */
+export function formatRemediation(r) {
+    const head = `🔧 Known failure (${r.id}): ${r.summary}`;
+    const body = r.fix.map((step, i) => `   ${i + 1}. ${step}`).join('\n');
+    const tail = r.scope === 'project-local'
+        ? '   → Take the project-local step above and re-run; do not repeat the same command unchanged.'
+        : '   → This one is a machine-level change; state it plainly if it is required.';
+    return `${head}\n${body}\n${tail}`;
+}
+//# sourceMappingURL=remediation-ladder.js.map

package/dist/tools/remediation-ladder.js.map

@@ -0,0 +1 @@
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package/dist/tools/run-terminal.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"run-terminal.d.ts","sourceRoot":"","sources":["../../src/tools/run-terminal.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+BG;AAWH,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAiLjD;;;;;;;GAOG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAuBvD;AAOD;;;GAGG;AACH,wBAAgB,6BAA6B,CAAC,OAAO,EAAE,MAAM,GAAG,OAAO,CAetE;AAED,KAAK,YAAY,GAAG,MAAM,GAAG,QAAQ,GAAG,SAAS,CAAC;AAuDlD,qFAAqF;AACrF,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,YAAY,CAe7D;AAED,iFAAiF;AAEjF,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,wBAAsB,eAAe,CAAC,IAAI,EAAE,eAAe,EAAE,GAAG,EAAE,WAAW,GAAG,OAAO,CAAC,MAAM,CAAC,CA2J9F"}

package/dist/tools/run-terminal.js

@@ -32,6 +32,7 @@
  */
 import { spawn } from 'node:child_process';
 import { existsSync } from 'node:fs';
+import { applyRemediationAutoFixes, diagnoseFailure, formatAutoApply, formatRemediation, remediationAutoApplyEnabled, } from './remediation-ladder.js';
 import { maskSenderId } from '../utils/mask.js';
 import { decideStateChange } from '../learning/autonomy-policy.js';
 import { envelopeCoversAction } from '../learning/intent-envelope.js';
@@ -98,6 +99,27 @@ const VERIFY_PREFIXES = [
     // segment splitter cannot tell a helper from a real command.
     'basename', 'dirname', 'realpath',
 ];
+/**
+ * Read-only PROBES — `<cmd> --version` / `--help`, and package-metadata reads.
+ *
+ * WHY THIS EXISTS (2026-10-04). A version/help probe changes nothing, but it
+ * was not on the verify allowlist, so the classifier scored it `confirm`, the
+ * gate refused it as `external` ("has an effect outside this machine"), and a
+ * live trace (`trace-1791118650644-d73hyr`) burned five steps on `cargo
+ * --version` before stalling and failing over to a tiny local model. The old
+ * `npm view …` refusal in `trace-1791037551766-gznlyy` is the same bug. A
+ * command that cannot mutate state must never generate a prompt.
+ *
+ * Deliberately narrow: the LAST token must BE the probe flag (so `--version`
+ * as a value, e.g. `echo --version`, still classifies by `echo`), and the
+ * info commands listed all read remote metadata without writing anything.
+ */
+const READ_ONLY_PROBE_RE = /(?:^|\s)(?:--version|-V|--help|-h)$/;
+const READ_ONLY_INFO_PREFIXES = [
+    'npm view', 'npm info', 'npm ls', 'npm list', 'npm ping', 'npm outdated',
+    'cargo search', 'cargo metadata', 'pip show', 'pip list', 'command -v',
+    'go version', 'go env', 'java -version',
+];
 /**
  * Recoverable WORKSPACE commands — the state-changing operations a requested
  * build/development task legitimately needs, and that cannot strand the user
@@ -270,6 +292,16 @@ function classifySegment(segment) {
             return 'verify';
         }
     }
+    // Read-only probes (`<cmd> --version` / `--help`) and metadata reads — they
+    // cannot change state, so they never need confirmation (see the constants).
+    if (READ_ONLY_PROBE_RE.test(segment))
+        return 'verify';
+    for (const prefix of READ_ONLY_INFO_PREFIXES) {
+        const pt = prefix.split(' ');
+        if (pt.length <= toks.length && toks.slice(0, pt.length).join(' ') === prefix) {
+            return 'verify';
+        }
+    }
     return 'confirm';
 }
 /** Classify a command — deny regexes on the FULL string, worst-class on segments. */
@@ -363,6 +395,9 @@ export async function runTerminalTool(args, ctx) {
                 authorizedByRequest: ctx.writesAuthorized?.authorized === true,
             });
         if (verdict.action !== 'proceed') {
+            // Mark the pending confirmation so ask_user does NOT suppress the very
+            // question this refusal asks for (see ToolContext.pendingConfirmation).
+            ctx.pendingConfirmation = { tool: 'run_terminal', command };
             return (`Error: run_terminal: "${command}" changes state and needs explicit confirmation ` +
                 `(${verdict.reason}). Call ask_user (yes/no, one-line reason), then re-call run_terminal ` +
                 `with the SAME command plus confirm:true only if the user agreed.`);
@@ -379,6 +414,27 @@ export async function runTerminalTool(args, ctx) {
     const timeoutMs = Math.min(MAX_TIMEOUT_MS, Math.max(1000, Math.floor(args.timeout_ms ?? DEFAULT_TIMEOUT_MS)));
     const startedAt = Date.now();
     const output = await execCommand(command, ctx.cwd, timeoutMs, runEnv);
+    // A4 — a KNOWN toolchain failure gets its known fix appended, so the model
+    // repairs instead of re-trying the identical command. Advisory only: the note
+    // names the bounded, project-local step; it never mutates the workspace.
+    const remediation = output.startsWith('Error:')
+        ? diagnoseFailure(command, output, ctx.cwd)
+        : null;
+    const remediationNote = remediation ? `\n\n${formatRemediation(remediation)}` : '';
+    // Auto-apply (opt-in, NUVIRA_REMEDIATE=auto): take the safe, idempotent
+    // project-local step now instead of asking the model to transcribe it, and
+    // report exactly what changed. Off by default — advisory stays the norm.
+    const autoApplyNote = remediation?.autoFix?.length && remediationAutoApplyEnabled()
+        ? (() => {
+            const result = applyRemediationAutoFixes(remediation);
+            ctx.emit?.('remediation:auto-applied', {
+                id: remediation.id,
+                applied: result.applied,
+                skipped: result.skipped,
+            }, 'tool-loop');
+            return `\n\n${formatAutoApply(result)}`;
+        })()
+        : '';
     // ── A1: effect verification — a BUILD is not done until its artifact is
     // OBSERVED to launch. The live Aukat_check run reported "successfully built
     // and functional" for a bundle that crashed on import; exit code 0 is not
@@ -399,12 +455,14 @@ export async function runTerminalTool(args, ctx) {
             effectNote = `\n${formatEffectVerdict(verdict)}`;
     }
     if (!decidedAutonomously)
-        return output + effectNote + envNote;
+        return output + effectNote + envNote + remediationNote + autoApplyNote;
     // Reported, never silent — a judgment call the user cannot see is
     // indistinguishable from a bug.
     return (`${output}${effectNote}\n💡 Ran without asking: ${autonomyReason}. State what you ran in your answer — ` +
         'do not ask for permission to do work the user already asked for.' +
-        envNote);
+        envNote +
+        remediationNote +
+        autoApplyNote);
 }
 /** Spawn the command (shell-interpreted — pipes, &&, substitutions work). */
 function execCommand(command, cwd, timeoutMs, envOverride) {

package/dist/tools/run-terminal.js.map

@@ -1 +1 @@
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package/dist/tools/skills-hub.d.ts

@@ -26,6 +26,13 @@ export interface SkillManifest {
     source: string;
     sourceHash: string;
     installedAt?: number;
+    /**
+     * The raw SKILL.md (frontmatter + body). Carried so `install()` can write the
+     * skill's actual instructions — a manifest with only metadata would install a
+     * SKILL.md whose body was thrown away (the model then loads an empty
+     * methodology). This is what the hub tool hands back to callers.
+     */
+    content?: string;
 }
 export interface LockEntry {
     name: string;

package/dist/tools/skills-hub.d.ts.map

@@ -1 +1 @@
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