agent-nuvira 3.3.0 → 3.3.3

package/dist/learning/run-trace.js

@@ -0,0 +1,342 @@
+/**
+ * The Run Trace — the loop's representation of ITS OWN behaviour.
+ *
+ * WHY THIS EXISTS (the "it took no concern out of it" audit):
+ *
+ * A user asked agent-nuvira, in as many words, "why are you asking me this again
+ * and again?" — and the turn did not acknowledge it. Not because the model was
+ * incapable, but because **nothing in the architecture held the fact that it had
+ * asked four times**. The loop's counters measure the loop's own NUDGES
+ * (`permissionNudges < 1`), not the model's repeated questions; the gates judge
+ * the CURRENT step's text; and the transcript is not a data structure anything
+ * reasons over. So the agent could not notice a loop, could not answer a
+ * question about one, and could not stop one.
+ *
+ * That is the whole difference between an agent that reviews its own actions and
+ * one that merely executes a pipeline: a REPRESENTATION of the run. This module
+ * is it. Every question the agent asks is recorded with a *shape*, every refused
+ * tool call is recorded with its reason, and every mutation is recorded with its
+ * target — so the run can answer three questions it previously could not:
+ *
+ *   1. "Have I already asked this?"  -> the repetition gate refuses to re-ask.
+ *   2. "What did the user answer?"   -> the earlier answer is handed back.
+ *   3. "Why are you asking again?"   -> a self-report the model answers FROM.
+ *
+ * SCOPE: per CONVERSATION, like the intent envelope — the dashboard console
+ * keeps one plan store per session and re-injects it every turn, so the trace
+ * outlives the turn and a loop across turns is visible. Storage is bounded (the
+ * last N entries), so a long conversation cannot grow it without limit.
+ *
+ * DELIBERATELY DETERMINISTIC AND LLM-FREE: like `autonomy-policy.ts`, this is a
+ * guard rail around a model's own instinct. Asking a model "are you looping?" on
+ * every step is both expensive and unreliable; counting is neither. The model is
+ * asked to INTERPRET the trace only when the user asks about it.
+ */
+/**
+ * Words that carry no signal about WHAT is being asked — permission boilerplate
+ * and ordinary English. Stripping them is what lets "May I run `node -c
+ * script.js` to verify?" and "Run a JavaScript syntax check (`node -c
+ * script.js`)?" collapse to the same question.
+ */
+const STOPWORDS = new Set([
+    'the', 'and', 'you', 'your', 'yours', 'for', 'with', 'that', 'this', 'these', 'those',
+    'are', 'was', 'were', 'can', 'may', 'should', 'would', 'could', 'will', 'shall',
+    'please', 'want', 'like', 'let', 'me', 'us', 'to', 'of', 'in', 'on', 'at', 'by', 'it',
+    'is', 'be', 'been', 'do', 'does', 'did', 'doing', 'have', 'has', 'had', 'not', 'no',
+    'yes', 'ok', 'okay', 'a', 'an', 'i', 'we', 'my', 'our', 'about', 'then', 'than',
+    'run', 'running', 'ran', 'verify', 'verifying', 'verified', 'check', 'checking',
+    'perform', 'performing', 'before', 'after', 'now', 'again', 'sure', 'proceed',
+    'continue', 'go', 'ahead', 'use', 'using', 'make', 'making', 'need', 'needs', 'help',
+    'just', 'also', 'here', 'there', 'what', 'why', 'how', 'some', 'any', 'all',
+]);
+/** Normalize text for comparison (case, whitespace, punctuation-insensitive). */
+function normalize(text) {
+    return String(text ?? '')
+        .toLowerCase()
+        .replace(/[^\p{L}\p{N}./_-]+/gu, ' ')
+        .replace(/\s+/g, ' ')
+        .trim();
+}
+/** File-ish and command-ish targets, matched without requiring backticks. */
+const FILE_TARGET_RE = /\b[\w./-]+\.(?:js|cjs|mjs|ts|tsx|jsx|json|css|scss|html|md|py|go|rs|java|rb|yml|yaml|sh|toml|sql)\b/gi;
+// NOTE: deliberately no `go`/`make`/`bun`-style English-word collisions — a
+// command NAME is a target, but "make the logo bigger" must not become one, or
+// two unrelated questions would collide on the shared word "make".
+const COMMAND_TARGET_RE = /\b(?:node|npm|npx|pnpm|yarn|deno|python3?|pip3?|git|tsc|vitest|jest|mocha|cargo|docker|kubectl|curl|gh)\b[^\s`.,;:!?)]*/gi;
+/**
+ * Reduce a question to its salient shape.
+ *
+ * Targets are the strongest signal: if two questions both name `node -c
+ * script.js`, they are the same ask however differently they are phrased. Tokens
+ * are the fallback for a question with no explicit target.
+ */
+export function questionShape(question) {
+    const text = String(question ?? '');
+    const targets = new Set();
+    for (const m of text.matchAll(/`([^`]+)`/g)) {
+        const t = normalize(m[1]);
+        if (t)
+            targets.add(t);
+    }
+    for (const m of text.matchAll(FILE_TARGET_RE))
+        targets.add(normalize(m[0]));
+    for (const m of text.matchAll(COMMAND_TARGET_RE)) {
+        const t = normalize(m[0]);
+        if (t)
+            targets.add(t);
+    }
+    const tokens = [...new Set(normalize(text).split(' ').filter((w) => w.length >= 3 && !STOPWORDS.has(w)))];
+    return { targets: [...targets].sort(), tokens };
+}
+/** Jaccard overlap of two token sets (0 when either is empty). */
+function jaccard(a, b) {
+    if (a.length === 0 || b.length === 0)
+        return 0;
+    const setB = new Set(b);
+    const shared = a.filter((t) => setB.has(t)).length;
+    return shared / (a.length + b.length - shared);
+}
+/** Above this overlap two questions are treated as the same ask. */
+export const SAME_QUESTION_OVERLAP = 0.6;
+/**
+ * Is this the same question as an earlier one?
+ *
+ * Targets first — a shared target means the same thing is being asked about,
+ * which is the reliable signal ("May I run `node -c script.js`?" vs "Run a
+ * JavaScript syntax check (`node -c script.js`)?"). Only when neither has a
+ * target does token overlap decide, so a genuinely different question with the
+ * same shape ("which runtime?" … "which database?") is not counted as a repeat.
+ */
+export function isSameQuestion(a, b) {
+    if (a.targets.length > 0 && b.targets.length > 0) {
+        return a.targets.some((t) => b.targets.includes(t));
+    }
+    return jaccard(a.tokens, b.tokens) >= SAME_QUESTION_OVERLAP;
+}
+/** How many of each record the trace keeps (bounded — a long run must not grow). */
+export const MAX_TRACE_ENTRIES = 60;
+/**
+ * The run's own behaviour, as data.
+ *
+ * A class (not a plain array) because every consumer asks a QUESTION of it —
+ * "have I asked this?", "what was the answer?", "did I loop?" — and those
+ * questions should be answered in one place rather than re-derived by each
+ * caller.
+ */
+export class RunTrace {
+    asks = [];
+    refusals = [];
+    mutations = [];
+    /** Prior asks that are the SAME question as this one (excluding it). */
+    priorAskMatches(question) {
+        const shape = questionShape(question);
+        return this.asks.filter((a) => isSameQuestion(shape, a.shape));
+    }
+    /** The most recent SHOWN answer to this question, if the user gave one. */
+    priorAnswer(question) {
+        const matches = this.priorAskMatches(question).filter((a) => a.shown && a.answer);
+        return matches.length > 0 ? matches[matches.length - 1].answer : undefined;
+    }
+    /** Record that the agent asked something, and whether the user saw it. */
+    recordAsk(question, shown, answer) {
+        this.asks.push({
+            question: String(question ?? ''),
+            shape: questionShape(question),
+            shown,
+            ...(answer ? { answer } : {}),
+            at: Date.now(),
+        });
+        if (this.asks.length > MAX_TRACE_ENTRIES)
+            this.asks.shift();
+    }
+    /** Prior refusals of the SAME tool for the SAME reason. */
+    priorRefusalMatches(tool, detail) {
+        const signature = normalize(detail).slice(0, 200);
+        return this.refusals.filter((r) => r.tool === tool && r.signature === signature).length;
+    }
+    recordRefusal(tool, reason, detail) {
+        this.refusals.push({
+            tool,
+            signature: normalize(detail).slice(0, 200),
+            detail: String(detail ?? '').slice(0, 200),
+            at: Date.now(),
+        });
+        if (this.refusals.length > MAX_TRACE_ENTRIES)
+            this.refusals.shift();
+    }
+    recordMutation(tool, path) {
+        this.mutations.push({ tool, ...(path ? { path } : {}), at: Date.now() });
+        if (this.mutations.length > MAX_TRACE_ENTRIES)
+            this.mutations.shift();
+    }
+    countAsks() {
+        return this.asks.length;
+    }
+    countShownAsks() {
+        return this.asks.filter((a) => a.shown).length;
+    }
+    /**
+     * How many questions were asked more than once. The single number that says
+     * "this run looped on the conversation" — and the metric the fix is judged by.
+     */
+    repeatedAskCount() {
+        let repeats = 0;
+        for (let i = 0; i < this.asks.length; i += 1) {
+            for (let j = 0; j < i; j += 1) {
+                if (isSameQuestion(this.asks[i].shape, this.asks[j].shape)) {
+                    repeats += 1;
+                    break;
+                }
+            }
+        }
+        return repeats;
+    }
+    /**
+     * The counts, as a plain object — for surfaces that need the NUMBERS rather
+     * than the prose (the loop's result, the eval metric, the dashboard badge).
+     *
+     * `shownAsks` is the one that matters to a user: how many times the run
+     * actually stopped and asked them something. `asks` counts attempts, which is
+     * the number a gate can influence before the user ever sees it.
+     */
+    snapshot() {
+        return {
+            asks: this.asks.length,
+            shownAsks: this.countShownAsks(),
+            repeatedAsks: this.repeatedAskCount(),
+            refusals: this.refusals.length,
+            mutations: this.mutations.length,
+            paths: this.distinctMutationPaths(),
+        };
+    }
+    /** Distinct questions, each with how many times it was asked and its answer. */
+    askSummary() {
+        const groups = [];
+        for (const ask of this.asks) {
+            const hit = groups.find((g) => isSameQuestion(g.shape, ask.shape));
+            if (hit) {
+                hit.times += 1;
+                if (ask.shown && ask.answer)
+                    hit.answer = ask.answer;
+            }
+            else {
+                groups.push({ shape: ask.shape, question: ask.question, times: 1, answer: ask.shown ? ask.answer : undefined });
+            }
+        }
+        return groups.map(({ question, times, answer }) => ({
+            question,
+            times,
+            ...(answer ? { answer } : {}),
+        }));
+    }
+    distinctMutationPaths() {
+        return [...new Set(this.mutations.map((m) => m.path).filter((p) => Boolean(p)))];
+    }
+    /**
+     * The trace as text, for the model to answer FROM.
+     *
+     * Written for a reader that must not mistake it for a summary of the work: it
+     * describes the agent's OWN behaviour, so the number it leads with is the one
+     * a stuck run needs to see — how often it repeated itself.
+     */
+    selfReport() {
+        const lines = ['[Run trace — your own behaviour this conversation]'];
+        const shown = this.countShownAsks();
+        const repeated = this.repeatedAskCount();
+        if (this.asks.length === 0) {
+            lines.push('You have not asked the user any questions.');
+        }
+        else {
+            lines.push(`You asked ${this.asks.length} question(s); ${shown} reached the user; ` +
+                `${repeated} of them repeated a question you had already asked.`);
+            for (const s of this.askSummary()) {
+                const answer = s.answer ? ` — the user answered: "${s.answer}"` : ' — no answer recorded';
+                lines.push(`  • asked ${s.times}×: ${s.question.slice(0, 140)}${answer}`);
+            }
+        }
+        if (this.refusals.length > 0) {
+            lines.push(`Refused tool calls: ${this.refusals.length}.`);
+            for (const r of this.refusals.slice(-5)) {
+                lines.push(`  • ${r.tool}: ${r.detail}`);
+            }
+        }
+        const paths = this.distinctMutationPaths();
+        lines.push(paths.length > 0
+            ? `Files you changed: ${paths.slice(0, 10).join(', ')}${paths.length > 10 ? ` (+${paths.length - 10} more)` : ''}.`
+            : 'You have not changed any files.');
+        if (repeated > 0) {
+            lines.push('You REPEATED a question the user had already answered. Do not ask it again: ' +
+                'the answer above is the answer. Either act on it, or state plainly what blocks you.');
+        }
+        return lines.join('\n');
+    }
+}
+/**
+ * The correction handed back when the turn closes on a question the user has
+ * ALREADY answered.
+ *
+ * Deliberately does NOT say "proceed": a bare order to carry on would be unsafe
+ * when the answer was "no". It says the answer is already in hand — so act on
+ * it, or state plainly what blocks you. That is the difference between stopping
+ * a loop and bulldozing a decision.
+ */
+export function repeatNudge(question, answer) {
+    return ('You just asked a question the user has ALREADY answered in this conversation: ' +
+        `"${String(question ?? '').slice(0, 200)}". ` +
+        (answer ? `Their answer was: "${answer}". ` : '') +
+        'Do NOT ask it again. Act on the answer you already have, or — if it genuinely ' +
+        'does not settle the matter — say plainly what blocks you and what you need, instead ' +
+        'of repeating the question. Repeating a question the user has answered is the one ' +
+        'behaviour they will read as the agent being stuck.');
+}
+// ─── Frame detection: when is the user asking ABOUT the run? ────────────────
+/**
+ * The user asking about the agent's OWN behaviour ("why are you asking me this
+ * again and again?", "stop asking every second", "you keep asking permission").
+ *
+ * This is a distinct frame from a request: it is not work to be done, it is a
+ * question about the run. It must route the trace to the model rather than the
+ * ordinary "the request does not authorize files" analysis path — which is what
+ * previously happened, so the complaint was answered with planning prose and the
+ * loop continued.
+ */
+const PROCESS_COMPLAINT_RE = new RegExp([
+    '\\b(?:why|how\\s+come)\\b[^?]{0,80}\\b(?:ask|asks|asking|question|questions|prompt|prompts|prompting|permission)\\b',
+    '\\b(?:stop|quit|enough)\\s+(?:it\\s+)?(?:with\\s+)?(?:the\\s+)?(?:asking|questions|prompts|permission)\\b',
+    '\\byou\\s+(?:keep|kept|are\\s+always)\\s+asking\\b',
+    '\\bask(?:ing)?\\s+(?:me\\s+)?(?:again|repeatedly|every\\s+(?:second|time|step|turn))\\b',
+    '\\bsame\\s+question\\b',
+    '\\b(?:permission|approval)\\s+(?:again|every)\\b',
+].join('|'), 'i');
+/** Is the user asking about the agent's own behaviour? */
+export function detectProcessComplaint(text) {
+    const t = String(text ?? '').trim();
+    if (!t)
+        return false;
+    return PROCESS_COMPLAINT_RE.test(t);
+}
+// ─── Per-conversation storage ───────────────────────────────────────────────
+const traces = new WeakMap();
+/** Is this object usable as a trace key (a session handle)? */
+export function isTraceKey(key) {
+    return (typeof key === 'object' && key !== null) || typeof key === 'function';
+}
+/** The trace for a conversation, created on first use. */
+export function runTraceFor(key) {
+    let trace = traces.get(key);
+    if (!trace) {
+        trace = new RunTrace();
+        traces.set(key, trace);
+    }
+    return trace;
+}
+/** The trace for a conversation, or undefined when none exists yet. */
+export function peekRunTrace(key) {
+    return isTraceKey(key) ? traces.get(key) : undefined;
+}
+/** Drop the trace (the conversation ended). */
+export function clearRunTrace(key) {
+    if (isTraceKey(key))
+        traces.delete(key);
+}
+//# sourceMappingURL=run-trace.js.map

package/dist/learning/run-trace.js.map

@@ -0,0 +1 @@
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package/dist/learning/skill-store.js

@@ -13,27 +13,48 @@
  */
 import { readFileSync, writeFileSync, existsSync, mkdirSync, readdirSync, unlinkSync } from 'node:fs';
 import { join } from 'node:path';
-import { resolveNuviraHome } from '../config/paths.js';
-import { MAX_SKILLS } from './skill-types.js';
+import { envBuff, resolveNuviraDataPath } from '../config/paths.js';
+import { MAX_SKILLS, SKILL_PRECEDENCE_NOTE } from './skill-types.js';
 import { ALL_BUNDLED_SKILLS as BUNDLED_SKILLS } from '../skills/bundled-skills.js';
 import { logger } from '../utils/logger.js';
 // ─── Constants ──────────────────────────────────────────────────────────────
-const SKILLS_DIR = join(resolveNuviraHome(), 'skills');
-const INDEX_PATH = join(SKILLS_DIR, 'index.json');
+/**
+ * Where the skills live: the active Nuvira data dir, or `$NUVIRA_SKILLS_DIR`.
+ *
+ * Resolved PER CALL, never at module load. This was
+ * `join(resolveNuviraHome(), 'skills')` — a module-load constant off the raw
+ * home, which is the exact reach `config/paths.ts` documents as the bug this
+ * helper exists to prevent: it ignores the isolation override, so an isolated
+ * process read and SEEDED the developer's real profile.
+ *
+ * Measured, not assumed: the test suite wrote all 152 bundled skills plus
+ * `index.json` into the real `~/.nuvira/skills` on every run, and the moment two
+ * test files ran at once they raced on that directory — `seedBundledSkills()`
+ * returned 140 where the test expected 0, and a store the test had just created
+ * saw 67 of 152 skills, because the other worker was mid-write. A store this
+ * chatty is shared state, and shared state has to sit behind the override.
+ */
+function skillsDir() {
+    return envBuff('SKILLS_DIR') || resolveNuviraDataPath('skills');
+}
+function indexPath() {
+    return join(skillsDir(), 'index.json');
+}
 // Skill decay: skills lose relevance over time
 const SKILL_TTL_DAYS = 120; // Expire after 120 days without use
 const DECAY_DAYS_FOR_HALF_SCORE = 45; // Score halves after 45 days of no use
 const MIN_SKILL_SCORE = 0.15; // Prune skills below this score
 // ─── Helpers ────────────────────────────────────────────────────────────────
 function ensureDir() {
-    if (!existsSync(SKILLS_DIR)) {
-        mkdirSync(SKILLS_DIR, { recursive: true });
+    const dir = skillsDir();
+    if (!existsSync(dir)) {
+        mkdirSync(dir, { recursive: true });
     }
 }
 function skillFilePath(id) {
     // Sanitize ID for filesystem
     const safeId = id.replace(/[^a-zA-Z0-9_-]/g, '_');
-    return join(SKILLS_DIR, `${safeId}.json`);
+    return join(skillsDir(), `${safeId}.json`);
 }
 function generateId(name) {
     const slug = name
@@ -553,6 +574,10 @@ export class SkillStore {
                 sections.push(`- **${param.name}** ${required}${defaultVal}: ${param.description}`);
             }
         }
+        // Precedence — stated before the steps so they are read as methodology,
+        // never as an authorisation to override the live request.
+        sections.push('\n## Precedence');
+        sections.push(SKILL_PRECEDENCE_NOTE);
         // Steps (the core methodology)
         sections.push('\n## Execution Steps');
         sections.push('\nFollow these steps in order:');
@@ -586,10 +611,10 @@ export class SkillStore {
     loadIndex() {
         try {
             ensureDir();
-            if (!existsSync(INDEX_PATH)) {
+            if (!existsSync(indexPath())) {
                 return { skills: [], version: 1 };
             }
-            const raw = readFileSync(INDEX_PATH, 'utf-8');
+            const raw = readFileSync(indexPath(), 'utf-8');
             return JSON.parse(raw);
         }
         catch {
@@ -598,7 +623,7 @@ export class SkillStore {
     }
     saveIndex() {
         ensureDir();
-        writeFileSync(INDEX_PATH, JSON.stringify(this.index, null, 2), 'utf-8');
+        writeFileSync(indexPath(), JSON.stringify(this.index, null, 2), 'utf-8');
     }
 }
 // ─── Singleton ──────────────────────────────────────────────────────────────

package/dist/learning/skill-store.js.map

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package/dist/learning/skill-types.d.ts

@@ -115,4 +115,18 @@ export declare const MIN_TRAJECTORY_SCORE_FOR_COMPILATION = 0.65;
 export declare const SKILL_COMPILATION_INTERVAL = 5;
 /** Skills storage directory version */
 export declare const SKILL_STORE_VERSION = 1;
+/**
+ * The precedence rule attached to every skill whose steps are handed to the
+ * model as instructions (the `skill` tool and the store's skill view).
+ *
+ * WHY THIS EXISTS. A skill's methodology was arriving with the same authority
+ * as the user's request, and on 2026-09-23 that lost: asked to assess a project
+ * with the explicit constraint "do NOT modify any files yet — just report", the
+ * agent loaded `code-assessment`, hit the step that says produce the artifact,
+ * and wrote `CODE_ASSESSMENT.md` anyway. A skill is reusable METHODOLOGY; it
+ * is never an authorisation to override what the person in this conversation
+ * just told you. Keeping the text in one place means every surface that
+ * injects steps states the same rule.
+ */
+export declare const SKILL_PRECEDENCE_NOTE: string;
 //# sourceMappingURL=skill-types.d.ts.map

package/dist/learning/skill-types.d.ts.map

@@ -1 +1 @@
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package/dist/learning/skill-types.js

@@ -26,4 +26,23 @@ export const MIN_TRAJECTORY_SCORE_FOR_COMPILATION = 0.65;
 export const SKILL_COMPILATION_INTERVAL = 5;
 /** Skills storage directory version */
 export const SKILL_STORE_VERSION = 1;
+/**
+ * The precedence rule attached to every skill whose steps are handed to the
+ * model as instructions (the `skill` tool and the store's skill view).
+ *
+ * WHY THIS EXISTS. A skill's methodology was arriving with the same authority
+ * as the user's request, and on 2026-09-23 that lost: asked to assess a project
+ * with the explicit constraint "do NOT modify any files yet — just report", the
+ * agent loaded `code-assessment`, hit the step that says produce the artifact,
+ * and wrote `CODE_ASSESSMENT.md` anyway. A skill is reusable METHODOLOGY; it
+ * is never an authorisation to override what the person in this conversation
+ * just told you. Keeping the text in one place means every surface that
+ * injects steps states the same rule.
+ */
+export const SKILL_PRECEDENCE_NOTE = 'PRECEDENCE — explicit constraints in the user\u2019s CURRENT request outrank these steps. A skill is ' +
+    'a methodology, not an authorization: if the request says "do not modify files", "report only", ' +
+    '"change nothing yet", or names a scope, honour it even when a step below tells you to write an ' +
+    'artifact or edit code. When the two conflict, the user wins \u2014 carry out the part that is still ' +
+    'compatible and say in one line what you skipped and why, instead of quietly doing the thing they ' +
+    'forbade.';
 //# sourceMappingURL=skill-types.js.map

package/dist/learning/skill-types.js.map

@@ -1 +1 @@
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package/dist/mcp/catalog.js

@@ -15,9 +15,8 @@
  */
 import { existsSync, writeFileSync, mkdirSync, unlinkSync } from 'node:fs';
 import { join } from 'node:path';
-import { homedir } from 'node:os';
+import { resolveMcpConfigDir } from '../config/paths.js';
 import { logger } from '../utils/logger.js';
-import { MCP_CONFIG_DIR } from './types.js';
 /** Vetted catalog (exact pins; 2-week-old minimum for freshness on review). */
 export const MCP_CATALOG = [
     {
@@ -83,7 +82,7 @@ export function searchCatalog(query) {
 // ─── Install path ───────────────────────────────────────────────────────────
 /** The per-server config file for an installed catalog server. */
 export function catalogConfigPath(name, configDir) {
-    return join(configDir ?? join(homedir(), MCP_CONFIG_DIR), `${name}.json`);
+    return join(resolveMcpConfigDir(configDir), `${name}.json`);
 }
 /** Is a catalog server already installed? */
 export function isCatalogServerInstalled(name, configDir) {