agent-conf 2.0.1 → 2.0.2

package/dist/index.js

@@ -66,7 +66,7 @@ var CONFIG_DIR = ".agent-conf";
 var LOCKFILE_NAME = "lockfile.json";
 var CLI_VERSION = "0.1.0";
 function getBuildCommit() {
-  return true ? "95b3bde2e0c69d73035f93e655d08eb0c89e3b53" : "unknown";
+  return true ? "8dbc8e1181a2dcf46440e66df3306677ddb96bd1" : "unknown";
 }
 function getLockfilePath(targetDir) {
   return path.join(targetDir, CONFIG_DIR, LOCKFILE_NAME);
@@ -1998,6 +1998,9 @@ function generateSyncWorkflow2(repoFullName, prefix) {
 #
 # Downstream repos will reference this workflow like:
 #   uses: ${repoFullName}/.github/workflows/sync-reusable.yml@v1.0.0
+#
+# TOKEN: Requires a token with read access to the canonical repository.
+# The default GITHUB_TOKEN is used for operations on the downstream repo.
 
 name: Sync Reusable
 
@@ -2009,23 +2012,60 @@ on:
         required: false
         default: false
         type: boolean
+      commit_strategy:
+        description: 'How to commit changes: "pr" (create pull request) or "direct" (commit to current branch)'
+        required: false
+        default: 'pr'
+        type: string
+      pr_branch_prefix:
+        description: 'Branch prefix for PR branches'
+        required: false
+        default: '${prefix}/sync'
+        type: string
+      pr_title:
+        description: 'Pull request title'
+        required: false
+        default: 'chore(${prefix}): sync agent configuration'
+        type: string
       reviewers:
-        description: 'PR reviewers (comma-separated)'
+        description: 'PR reviewers (comma-separated GitHub usernames)'
         required: false
         type: string
+      commit_message:
+        description: 'Commit message for direct commits'
+        required: false
+        default: 'chore(${prefix}): sync agent configuration'
+        type: string
     secrets:
       token:
-        description: 'GitHub token with repo access'
+        description: 'GitHub token with read access to the canonical repository'
         required: true
+    outputs:
+      changes_detected:
+        description: 'Whether changes were detected after sync'
+        value: \${{ jobs.sync.outputs.changes_detected }}
+      pr_number:
+        description: 'Pull request number (if PR strategy and changes detected)'
+        value: \${{ jobs.sync.outputs.pr_number }}
+      pr_url:
+        description: 'Pull request URL (if PR strategy and changes detected)'
+        value: \${{ jobs.sync.outputs.pr_url }}
 
 jobs:
   sync:
     runs-on: ubuntu-latest
+    permissions:
+      contents: write
+      pull-requests: write
+    outputs:
+      changes_detected: \${{ steps.check-changes.outputs.changes_detected }}
+      pr_number: \${{ steps.create-pr.outputs.pr_number }}
+      pr_url: \${{ steps.create-pr.outputs.pr_url }}
     steps:
-      - name: Checkout downstream repo
+      - name: Checkout
         uses: actions/checkout@v4
         with:
-          token: \${{ secrets.token }}
+          fetch-depth: 0
 
       - name: Setup Node.js
         uses: actions/setup-node@v4
@@ -2036,10 +2076,74 @@ jobs:
         run: npm install -g agent-conf
 
       - name: Run sync
-        run: |
-          agent-conf sync --yes
+        run: agent-conf sync --yes
         env:
           GITHUB_TOKEN: \${{ secrets.token }}
+
+      - name: Check for changes
+        id: check-changes
+        run: |
+          if [ -n "$(git status --porcelain)" ]; then
+            echo "changes_detected=true" >> $GITHUB_OUTPUT
+            echo "Changes detected after sync"
+            git status --short
+          else
+            echo "changes_detected=false" >> $GITHUB_OUTPUT
+            echo "No changes detected after sync"
+          fi
+
+      - name: Configure git
+        if: steps.check-changes.outputs.changes_detected == 'true'
+        run: |
+          git config user.name "github-actions[bot]"
+          git config user.email "github-actions[bot]@users.noreply.github.com"
+
+      - name: Create PR branch and commit
+        if: steps.check-changes.outputs.changes_detected == 'true' && inputs.commit_strategy == 'pr'
+        run: |
+          BRANCH_NAME="\${{ inputs.pr_branch_prefix }}-$(date +%Y%m%d-%H%M%S)"
+          git checkout -b "$BRANCH_NAME"
+          git add -A
+          git commit -m "\${{ inputs.pr_title }}"
+          git push -u origin "$BRANCH_NAME"
+          echo "BRANCH_NAME=$BRANCH_NAME" >> $GITHUB_ENV
+
+      - name: Create pull request
+        id: create-pr
+        if: steps.check-changes.outputs.changes_detected == 'true' && inputs.commit_strategy == 'pr'
+        env:
+          GH_TOKEN: \${{ github.token }}
+        run: |
+          PR_BODY="This PR was automatically created by the ${prefix} sync workflow.
+
+          ## Changes
+          - Synced agent configuration from canonical repository
+
+          ---
+          *This is an automated PR. Review the changes and merge when ready.*"
+
+          REVIEWERS_ARG=""
+          if [ -n "\${{ inputs.reviewers }}" ]; then
+            REVIEWERS_ARG="--reviewer \${{ inputs.reviewers }}"
+          fi
+
+          PR_URL=$(gh pr create \\
+            --title "\${{ inputs.pr_title }}" \\
+            --body "$PR_BODY" \\
+            $REVIEWERS_ARG)
+
+          PR_NUMBER=$(gh pr view --json number -q .number)
+          echo "pr_url=$PR_URL" >> $GITHUB_OUTPUT
+          echo "pr_number=$PR_NUMBER" >> $GITHUB_OUTPUT
+          echo "Created PR #$PR_NUMBER: $PR_URL"
+
+      - name: Commit directly to branch
+        if: steps.check-changes.outputs.changes_detected == 'true' && inputs.commit_strategy == 'direct'
+        run: |
+          git add -A
+          git commit -m "\${{ inputs.commit_message }}"
+          git push
+          echo "Changes committed directly to $(git branch --show-current)"
 `;
 }
 function generateCheckWorkflow2(repoFullName, prefix) {
@@ -2048,6 +2152,8 @@ function generateCheckWorkflow2(repoFullName, prefix) {
 #
 # Downstream repos will reference this workflow like:
 #   uses: ${repoFullName}/.github/workflows/check-reusable.yml@v1.0.0
+#
+# TOKEN: Requires a token with read access to the canonical repository.
 
 name: Check Reusable
 
@@ -2055,7 +2161,7 @@ on:
   workflow_call:
     secrets:
       token:
-        description: 'GitHub token with repo access'
+        description: 'GitHub token with read access to the canonical repository'
         required: true
 
 jobs:
@@ -2064,8 +2170,6 @@ jobs:
     steps:
       - name: Checkout
         uses: actions/checkout@v4
-        with:
-          token: \${{ secrets.token }}
 
       - name: Setup Node.js
         uses: actions/setup-node@v4
@@ -2076,8 +2180,9 @@ jobs:
         run: npm install -g agent-conf
 
       - name: Check file integrity
-        run: |
-          agent-conf check
+        run: agent-conf check
+        env:
+          GITHUB_TOKEN: \${{ secrets.token }}
 `;
 }
 async function initCanonicalRepoCommand(options) {

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/cli.ts","../src/commands/check.ts","../src/core/lockfile.ts","../src/schemas/lockfile.ts","../src/commands/completion.ts","../src/commands/config.ts","../src/utils/logger.ts","../src/commands/init.ts","../src/core/sync.ts","../src/core/merge.ts","../src/core/targets.ts","../src/commands/shared.ts","../src/core/hooks.ts","../src/core/source.ts","../src/core/version.ts","../src/core/workflows.ts","../src/utils/fs.ts","../src/utils/git.ts","../src/commands/init-canonical-repo.ts","../src/commands/status.ts","../src/commands/sync.ts","../src/commands/upgrade-cli.ts","../src/index.ts"],"sourcesContent":["import { Command } from \"commander\";\nimport pc from \"picocolors\";\nimport { checkCommand } from \"./commands/check.js\";\nimport { handleCompletion, installCompletion, uninstallCompletion } from \"./commands/completion.js\";\nimport { configGetCommand, configSetCommand, configShowCommand } from \"./commands/config.js\";\nimport { initCommand } from \"./commands/init.js\";\nimport { initCanonicalRepoCommand } from \"./commands/init-canonical-repo.js\";\nimport { statusCommand } from \"./commands/status.js\";\nimport { syncCommand } from \"./commands/sync.js\";\nimport { upgradeCliCommand } from \"./commands/upgrade-cli.js\";\nimport { checkCliVersionMismatch, getCliVersion } from \"./core/lockfile.js\";\nimport { getGitRoot } from \"./utils/git.js\";\n\n// Handle shell completion requests before anything else\n// This must happen synchronously at module load time\nif (handleCompletion()) {\n  process.exit(0);\n}\n\n/**\n * Checks if the installed CLI is outdated compared to the lockfile's source commit.\n * Shows a warning if they don't match.\n */\nasync function warnIfCliOutdated(): Promise<void> {\n  try {\n    const cwd = process.cwd();\n    const gitRoot = await getGitRoot(cwd);\n    if (!gitRoot) return;\n\n    const mismatch = await checkCliVersionMismatch(gitRoot);\n    if (mismatch) {\n      console.log();\n      console.log(\n        pc.yellow(\n          `⚠ CLI is outdated: built from ${mismatch.cliCommit}, but repo was synced from ${mismatch.lockfileCommit}`,\n        ),\n      );\n      console.log(\n        pc.yellow(\n          \"  Rebuild the CLI: cd <agent-conf-repo>/cli && pnpm build && pnpm link --global\",\n        ),\n      );\n      console.log();\n    }\n  } catch {\n    // Silently ignore errors - this is a best-effort check\n  }\n}\n\nexport function createCli(): Command {\n  const program = new Command();\n\n  program\n    .name(\"agent-conf\")\n    .description(\"Sync company engineering standards from agent-conf repository\")\n    .version(getCliVersion())\n    .hook(\"preAction\", async () => {\n      await warnIfCliOutdated();\n    });\n\n  program\n    .command(\"init\")\n    .description(\"Initialize or sync agent-conf standards to the current repository\")\n    .option(\n      \"-s, --source <repo>\",\n      \"Canonical repository in owner/repo format (e.g., acme/standards)\",\n    )\n    .option(\"--local [path]\", \"Use local canonical repository (auto-discover or specify path)\")\n    .option(\"-y, --yes\", \"Non-interactive mode (merge by default)\")\n    .option(\"--override\", \"Override existing AGENTS.md instead of merging\")\n    .option(\"--ref <ref>\", \"GitHub ref/version to sync from (default: latest release)\")\n    .option(\"-t, --target <targets...>\", \"Target platforms (claude, codex)\", [\"claude\"])\n    .action(\n      async (options: {\n        source?: string;\n        local?: string | boolean;\n        yes?: boolean;\n        override?: boolean;\n        ref?: string;\n        target?: string[];\n      }) => {\n        await initCommand(options);\n      },\n    );\n\n  program\n    .command(\"sync\")\n    .description(\"Sync content from canonical repository (fetches latest by default)\")\n    .option(\n      \"-s, --source <repo>\",\n      \"Canonical repository in owner/repo format (e.g., acme/standards)\",\n    )\n    .option(\"--local [path]\", \"Use local canonical repository (auto-discover or specify path)\")\n    .option(\"-y, --yes\", \"Non-interactive mode (merge by default)\")\n    .option(\"--override\", \"Override existing AGENTS.md instead of merging\")\n    .option(\"--ref <ref>\", \"GitHub ref/version to sync from\")\n    .option(\"--pinned\", \"Use lockfile version without fetching latest\")\n    .option(\"-t, --target <targets...>\", \"Target platforms (claude, codex)\", [\"claude\"])\n    .action(\n      async (options: {\n        source?: string;\n        local?: string | boolean;\n        yes?: boolean;\n        override?: boolean;\n        ref?: string;\n        pinned?: boolean;\n        target?: string[];\n      }) => {\n        await syncCommand(options);\n      },\n    );\n\n  program\n    .command(\"status\")\n    .description(\"Show current sync status\")\n    .option(\"-c, --check\", \"Check for manually modified skill files\")\n    .action(async (options: { check?: boolean }) => {\n      await statusCommand(options);\n    });\n\n  program\n    .command(\"check\")\n    .description(\"Check if managed files have been modified\")\n    .option(\"-q, --quiet\", \"Minimal output, just exit code\")\n    .action(async (options: { quiet?: boolean }) => {\n      await checkCommand(options);\n    });\n\n  program\n    .command(\"upgrade-cli\")\n    .description(\"Upgrade the agent-conf CLI to the latest version\")\n    .option(\"-y, --yes\", \"Non-interactive mode\")\n    .action(async (options: { yes?: boolean }) => {\n      await upgradeCliCommand(options);\n    });\n\n  // Config command with subcommands\n  const configCmd = program.command(\"config\").description(\"Manage global CLI configuration\");\n\n  configCmd\n    .command(\"show\")\n    .description(\"Show all configuration values\")\n    .action(async () => {\n      await configShowCommand();\n    });\n\n  configCmd\n    .command(\"get <key>\")\n    .description(\"Get a configuration value\")\n    .action(async (key: string) => {\n      await configGetCommand(key);\n    });\n\n  configCmd\n    .command(\"set <key> <value>\")\n    .description(\"Set a configuration value\")\n    .action(async (key: string, value: string) => {\n      await configSetCommand(key, value);\n    });\n\n  // Default for config command: show config\n  configCmd.action(async () => {\n    await configShowCommand();\n  });\n\n  // Completion command with subcommands\n  const completionCmd = program\n    .command(\"completion\")\n    .description(\"Manage shell completions (bash, zsh, fish)\");\n\n  completionCmd\n    .command(\"install\")\n    .description(\"Install shell completions for your current shell\")\n    .action(async () => {\n      await installCompletion();\n    });\n\n  completionCmd\n    .command(\"uninstall\")\n    .description(\"Remove shell completions\")\n    .action(async () => {\n      await uninstallCompletion();\n    });\n\n  // Default for completion command: install\n  completionCmd.action(async () => {\n    await installCompletion();\n  });\n\n  program\n    .command(\"init-canonical-repo\")\n    .description(\"Scaffold a new canonical repository structure\")\n    .option(\"-n, --name <name>\", \"Name for the canonical repository\")\n    .option(\"-o, --org <organization>\", \"Organization name\")\n    .option(\"-d, --dir <directory>\", \"Target directory (default: current)\")\n    .option(\"--marker-prefix <prefix>\", \"Marker prefix (default: agent-conf)\")\n    .option(\"--no-examples\", \"Skip example skill creation\")\n    .option(\"-y, --yes\", \"Non-interactive mode\")\n    .action(\n      async (options: {\n        name?: string;\n        org?: string;\n        dir?: string;\n        markerPrefix?: string;\n        examples?: boolean;\n        yes?: boolean;\n      }) => {\n        await initCanonicalRepoCommand({\n          name: options.name,\n          org: options.org,\n          dir: options.dir,\n          markerPrefix: options.markerPrefix,\n          includeExamples: options.examples,\n          yes: options.yes,\n        });\n      },\n    );\n\n  // Default command: show help\n  program.action(() => {\n    program.help();\n  });\n\n  return program;\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport pc from \"picocolors\";\nimport { readLockfile } from \"../core/lockfile.js\";\nimport {\n  computeGlobalBlockHash,\n  parseAgentsMd,\n  parseGlobalBlockMetadata,\n  stripMetadataComments,\n} from \"../core/markers.js\";\nimport {\n  checkAllManagedFiles,\n  computeContentHash,\n  parseFrontmatter,\n} from \"../core/skill-metadata.js\";\n\nexport interface CheckOptions {\n  quiet?: boolean;\n}\n\nexport interface CheckResult {\n  synced: boolean;\n  modifiedFiles: ModifiedFileInfo[];\n}\n\nexport interface ModifiedFileInfo {\n  path: string;\n  type: \"skill\" | \"agents\";\n  expectedHash: string;\n  currentHash: string;\n}\n\n/**\n * Check if managed files have been modified.\n * Exits with code 0 if all files are unchanged, code 1 if changes detected.\n */\nexport async function checkCommand(options: CheckOptions = {}): Promise<void> {\n  const targetDir = process.cwd();\n\n  // Check if synced (lockfile exists)\n  const lockfile = await readLockfile(targetDir);\n\n  if (!lockfile) {\n    if (!options.quiet) {\n      console.log();\n      console.log(pc.yellow(\"Not synced\"));\n      console.log();\n      console.log(pc.dim(\"This repository has not been synced with agent-conf.\"));\n      console.log(pc.dim(\"Run `agent-conf init` to sync engineering standards.\"));\n      console.log();\n    }\n    // Exit 0 - not synced is not an error for the check command\n    return;\n  }\n\n  const targets = lockfile.content.targets ?? [\"claude\"];\n  const modifiedFiles: ModifiedFileInfo[] = [];\n\n  // Check all managed files\n  const allFiles = await checkAllManagedFiles(targetDir, targets);\n\n  // Gather detailed info for modified files\n  for (const file of allFiles) {\n    if (!file.hasChanges) continue;\n\n    if (file.type === \"agents\") {\n      // Get hash info for AGENTS.md\n      const agentsMdPath = path.join(targetDir, \"AGENTS.md\");\n      const content = await fs.readFile(agentsMdPath, \"utf-8\");\n      const parsed = parseAgentsMd(content);\n\n      if (parsed.globalBlock) {\n        const metadata = parseGlobalBlockMetadata(parsed.globalBlock);\n        const contentWithoutMeta = stripMetadataComments(parsed.globalBlock);\n        const currentHash = computeGlobalBlockHash(contentWithoutMeta);\n\n        modifiedFiles.push({\n          path: \"AGENTS.md\",\n          type: \"agents\",\n          expectedHash: metadata.contentHash ?? \"unknown\",\n          currentHash,\n        });\n      }\n    } else if (file.type === \"skill\") {\n      // Get hash info for skill file\n      const skillPath = path.join(targetDir, file.path);\n      const content = await fs.readFile(skillPath, \"utf-8\");\n      const { frontmatter } = parseFrontmatter(content);\n\n      const metadata = frontmatter.metadata as Record<string, string> | undefined;\n      const storedHash = metadata?.agent_conf_content_hash ?? \"unknown\";\n      const currentHash = computeContentHash(content);\n\n      modifiedFiles.push({\n        path: file.path,\n        type: \"skill\",\n        expectedHash: storedHash,\n        currentHash,\n      });\n    }\n  }\n\n  // Output results\n  if (options.quiet) {\n    // Quiet mode: just exit with appropriate code\n    if (modifiedFiles.length > 0) {\n      process.exit(1);\n    }\n    return;\n  }\n\n  console.log();\n  console.log(pc.bold(\"agent-conf check\"));\n  console.log();\n  console.log(\"Checking managed files...\");\n  console.log();\n\n  if (modifiedFiles.length === 0) {\n    console.log(`${pc.green(\"✓\")} All managed files are unchanged`);\n    console.log();\n    return;\n  }\n\n  // Modified files found\n  console.log(`${pc.red(\"✗\")} ${modifiedFiles.length} managed file(s) have been modified:`);\n  console.log();\n\n  for (const file of modifiedFiles) {\n    const label = file.type === \"agents\" ? \" (global block)\" : \"\";\n    console.log(`  ${file.path}${pc.dim(label)}`);\n    console.log(`    Expected hash: ${pc.dim(file.expectedHash)}`);\n    console.log(`    Current hash:  ${pc.dim(file.currentHash)}`);\n    console.log();\n  }\n\n  console.log(pc.dim(\"These files are managed by agent-conf and should not be modified manually.\"));\n  console.log(pc.dim(\"Run 'agent-conf sync' to restore them to the expected state.\"));\n  console.log();\n\n  process.exit(1);\n}\n","import { createHash } from \"node:crypto\";\nimport * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport { type Lockfile, LockfileSchema, type Source } from \"../schemas/lockfile.js\";\n\n// Injected at build time by tsup\ndeclare const __BUILD_COMMIT__: string;\n\nconst CONFIG_DIR = \".agent-conf\";\nconst LOCKFILE_NAME = \"lockfile.json\";\nconst CLI_VERSION = \"0.1.0\";\n\n/**\n * Gets the git commit SHA the CLI was built from.\n */\nexport function getBuildCommit(): string {\n  return typeof __BUILD_COMMIT__ !== \"undefined\" ? __BUILD_COMMIT__ : \"unknown\";\n}\n\nexport function getLockfilePath(targetDir: string): string {\n  return path.join(targetDir, CONFIG_DIR, LOCKFILE_NAME);\n}\n\nexport async function readLockfile(targetDir: string): Promise<Lockfile | null> {\n  const lockfilePath = getLockfilePath(targetDir);\n\n  try {\n    const content = await fs.readFile(lockfilePath, \"utf-8\");\n    const parsed: unknown = JSON.parse(content);\n    return LockfileSchema.parse(parsed);\n  } catch (error) {\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\n      return null;\n    }\n    throw error;\n  }\n}\n\nexport interface WriteLockfileOptions {\n  source: Source;\n  globalBlockContent: string;\n  skills: string[];\n  targets?: string[];\n  pinnedVersion?: string;\n}\n\nexport async function writeLockfile(\n  targetDir: string,\n  options: WriteLockfileOptions,\n): Promise<Lockfile> {\n  const lockfilePath = getLockfilePath(targetDir);\n\n  const lockfile: Lockfile = {\n    version: \"1\",\n    pinned_version: options.pinnedVersion,\n    synced_at: new Date().toISOString(),\n    source: options.source,\n    content: {\n      agents_md: {\n        global_block_hash: hashContent(options.globalBlockContent),\n        merged: true,\n      },\n      skills: options.skills,\n      targets: options.targets ?? [\"claude\"],\n    },\n    cli_version: CLI_VERSION,\n  };\n\n  await fs.mkdir(path.dirname(lockfilePath), { recursive: true });\n  await fs.writeFile(lockfilePath, `${JSON.stringify(lockfile, null, 2)}\\n`, \"utf-8\");\n\n  return lockfile;\n}\n\nexport function hashContent(content: string): string {\n  const hash = createHash(\"sha256\").update(content).digest(\"hex\");\n  return `sha256:${hash.slice(0, 12)}`;\n}\n\nexport function getCliVersion(): string {\n  return CLI_VERSION;\n}\n\nexport interface VersionMismatch {\n  cliCommit: string;\n  lockfileCommit: string;\n}\n\n/**\n * Checks if the CLI's build commit matches the lockfile's source commit.\n * Returns mismatch info if they differ (CLI is outdated), null otherwise.\n */\nexport async function checkCliVersionMismatch(targetDir: string): Promise<VersionMismatch | null> {\n  const lockfile = await readLockfile(targetDir);\n\n  // No lockfile means first sync - no mismatch\n  if (!lockfile) {\n    return null;\n  }\n\n  // Only check for GitHub sources (local doesn't have a meaningful commit to compare)\n  if (lockfile.source.type !== \"github\") {\n    return null;\n  }\n\n  const cliCommit = getBuildCommit();\n  const lockfileCommit = lockfile.source.commit_sha;\n\n  // If CLI commit is unknown, we can't compare\n  if (cliCommit === \"unknown\") {\n    return null;\n  }\n\n  // Check if commits match (compare first 7 chars for short SHA compatibility)\n  const cliShort = cliCommit.slice(0, 7);\n  const lockfileShort = lockfileCommit.slice(0, 7);\n\n  if (cliShort !== lockfileShort) {\n    return {\n      cliCommit: cliShort,\n      lockfileCommit: lockfileShort,\n    };\n  }\n\n  return null;\n}\n","import { z } from \"zod\";\n\nexport const SourceSchema = z.discriminatedUnion(\"type\", [\n  z.object({\n    type: z.literal(\"github\"),\n    repository: z.string(),\n    commit_sha: z.string(),\n    ref: z.string(),\n  }),\n  z.object({\n    type: z.literal(\"local\"),\n    path: z.string(),\n    commit_sha: z.string().optional(),\n  }),\n]);\n\nexport const ContentSchema = z.object({\n  agents_md: z.object({\n    global_block_hash: z.string(),\n    merged: z.boolean(),\n  }),\n  skills: z.array(z.string()),\n  targets: z.array(z.string()).optional(),\n});\n\nexport const LockfileSchema = z.object({\n  version: z.literal(\"1\"),\n  pinned_version: z.string().optional(), // Pinned release version (e.g., \"1.2.0\")\n  synced_at: z.string().datetime(),\n  source: SourceSchema,\n  content: ContentSchema,\n  cli_version: z.string(),\n});\n\nexport type Source = z.infer<typeof SourceSchema>;\nexport type Content = z.infer<typeof ContentSchema>;\nexport type Lockfile = z.infer<typeof LockfileSchema>;\n","import fs from \"node:fs\";\nimport os from \"node:os\";\nimport path from \"node:path\";\nimport * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport tabtab from \"tabtab\";\n// @ts-expect-error - tabtab internal module not typed\nimport tabtabInstaller from \"tabtab/lib/installer.js\";\n\nconst CLI_NAME = \"agent-conf\";\n\n// Commands and their options for completion\nconst COMMANDS = {\n  init: {\n    description: \"Initialize or sync agent-conf standards\",\n    options: [\"-s\", \"--source\", \"--local\", \"-y\", \"--yes\", \"--override\", \"--ref\", \"-t\", \"--target\"],\n  },\n  sync: {\n    description: \"Sync agent-conf standards\",\n    options: [\"-s\", \"--source\", \"--local\", \"-y\", \"--yes\", \"--override\", \"--ref\", \"-t\", \"--target\"],\n  },\n  status: {\n    description: \"Show current sync status\",\n    options: [\"-c\", \"--check\"],\n  },\n  update: {\n    description: \"Check for and apply updates\",\n    options: [\"-y\", \"--yes\", \"-t\", \"--target\"],\n  },\n  check: {\n    description: \"Check if managed files have been modified\",\n    options: [\"-q\", \"--quiet\"],\n  },\n  config: {\n    description: \"Manage global CLI configuration\",\n    options: [],\n  },\n  \"upgrade-cli\": {\n    description: \"Upgrade the CLI to latest version\",\n    options: [\"-y\", \"--yes\"],\n  },\n  \"init-canonical-repo\": {\n    description: \"Scaffold a new canonical repository\",\n    options: [\n      \"-n\",\n      \"--name\",\n      \"-o\",\n      \"--org\",\n      \"-d\",\n      \"--dir\",\n      \"--marker-prefix\",\n      \"--no-examples\",\n      \"-y\",\n      \"--yes\",\n    ],\n  },\n  completion: {\n    description: \"Manage shell completions\",\n    options: [],\n  },\n};\n\nconst CONFIG_SUBCOMMANDS = [\"show\", \"get\", \"set\"];\nconst COMPLETION_SUBCOMMANDS = [\"install\", \"uninstall\"];\nconst TARGET_VALUES = [\"claude\", \"codex\"];\n\n/**\n * Handle shell completion requests.\n * This should be called early in the CLI lifecycle.\n * Returns true if this was a completion request (and it was handled).\n */\nexport function handleCompletion(): boolean {\n  const env = tabtab.parseEnv(process.env);\n\n  if (!env.complete) {\n    return false;\n  }\n\n  // Determine what to complete based on context\n  const { prev, words } = env;\n\n  // Complete command names\n  if (prev === CLI_NAME || words === 1) {\n    tabtab.log(\n      Object.entries(COMMANDS).map(([name, info]) => ({\n        name,\n        description: info.description,\n      })),\n    );\n    return true;\n  }\n\n  // Find which command we're completing for\n  const commandIndex = 1; // words[0] is the CLI name\n  const currentCommand = env.line.split(/\\s+/)[commandIndex];\n\n  // Complete subcommands for 'config'\n  if (currentCommand === \"config\" && words === 2) {\n    tabtab.log(\n      CONFIG_SUBCOMMANDS.map((name) => ({\n        name,\n        description: `${name} configuration`,\n      })),\n    );\n    return true;\n  }\n\n  // Complete subcommands for 'completion'\n  if (currentCommand === \"completion\" && words === 2) {\n    tabtab.log(\n      COMPLETION_SUBCOMMANDS.map((name) => ({\n        name,\n        description: `${name} shell completions`,\n      })),\n    );\n    return true;\n  }\n\n  // Complete --target values\n  if (prev === \"--target\" || prev === \"-t\") {\n    tabtab.log(TARGET_VALUES);\n    return true;\n  }\n\n  // Complete options for the current command\n  if (currentCommand && currentCommand in COMMANDS) {\n    const command = COMMANDS[currentCommand as keyof typeof COMMANDS];\n    tabtab.log(command.options);\n    return true;\n  }\n\n  // Default: complete command names\n  tabtab.log(Object.keys(COMMANDS));\n  return true;\n}\n\n/**\n * Get the tabtab completion script path for this CLI.\n * tabtab stores completions in ~/.config/tabtab/<name>.<shell>\n */\nfunction getTabtabCompletionFile(shell: string): string {\n  const home = os.homedir();\n  const ext = shell === \"fish\" ? \"fish\" : shell === \"zsh\" ? \"zsh\" : \"bash\";\n  return path.join(home, \".config\", \"tabtab\", `${CLI_NAME}.${ext}`);\n}\n\n/**\n * Check if shell completions are already installed for the current shell.\n */\nexport function isCompletionInstalled(): boolean {\n  const shell = detectShell();\n  if (!shell) return false;\n\n  // Check if the tabtab completion file exists for this CLI\n  const completionFile = getTabtabCompletionFile(shell);\n  if (fs.existsSync(completionFile)) {\n    return true;\n  }\n\n  // Fallback: check if the shell config mentions this CLI's completions\n  const configFile = getShellConfigFile(shell);\n  if (!configFile || !fs.existsSync(configFile)) return false;\n\n  try {\n    const content = fs.readFileSync(configFile, \"utf-8\");\n    return (\n      content.includes(`tabtab source for ${CLI_NAME}`) || content.includes(`begin ${CLI_NAME}`)\n    );\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Detect shell from $SHELL environment variable.\n * Uses the same detection method as tabtab for consistency.\n * Exported for testing.\n */\nexport function detectShell(): string | null {\n  const shell = process.env.SHELL || \"\";\n  if (shell.includes(\"fish\")) return \"fish\";\n  if (shell.includes(\"zsh\")) return \"zsh\";\n  if (shell.includes(\"bash\")) return \"bash\";\n  return null;\n}\n\n/** Get the config file path for a given shell. Exported for testing. */\nexport function getShellConfigFile(shell: string): string | null {\n  const home = os.homedir();\n  switch (shell) {\n    case \"zsh\":\n      return path.join(home, \".zshrc\");\n    case \"bash\": {\n      // Check for .bash_profile first (macOS), then .bashrc\n      const bashProfile = path.join(home, \".bash_profile\");\n      if (fs.existsSync(bashProfile)) return bashProfile;\n      return path.join(home, \".bashrc\");\n    }\n    case \"fish\":\n      return path.join(home, \".config\", \"fish\", \"config.fish\");\n    default:\n      return null;\n  }\n}\n\n/**\n * Install shell completions directly without prompting for shell.\n * Uses the detected shell from $SHELL environment variable.\n */\nasync function installCompletionForShell(shell: string): Promise<void> {\n  const location = getShellConfigFile(shell);\n  if (!location) {\n    throw new Error(`Unsupported shell: ${shell}`);\n  }\n\n  await tabtabInstaller.install({\n    name: CLI_NAME,\n    completer: CLI_NAME,\n    location,\n  });\n}\n\n/**\n * Install shell completions.\n */\nexport async function installCompletion(): Promise<void> {\n  console.log();\n  prompts.intro(pc.bold(\"Installing shell completions\"));\n\n  const shell = detectShell();\n  if (!shell) {\n    prompts.log.warn(\"Could not detect shell. Supported shells: bash, zsh, fish\");\n    prompts.outro(\"Completions not installed\");\n    return;\n  }\n\n  prompts.log.info(`Detected shell: ${pc.cyan(shell)}`);\n\n  if (isCompletionInstalled()) {\n    prompts.log.success(\"Shell completions are already installed\");\n    prompts.outro(\"Nothing to do\");\n    return;\n  }\n\n  try {\n    await installCompletionForShell(shell);\n\n    prompts.log.success(`Completions installed for ${pc.cyan(shell)}`);\n    prompts.log.info(\n      `Restart your shell or run: ${pc.cyan(`source ${getShellConfigFile(shell)}`)}`,\n    );\n    prompts.outro(\"Done!\");\n  } catch (error) {\n    prompts.log.error(`Failed to install completions: ${error}`);\n    prompts.outro(\"Installation failed\");\n    process.exit(1);\n  }\n}\n\n/**\n * Uninstall shell completions.\n */\nexport async function uninstallCompletion(): Promise<void> {\n  console.log();\n  prompts.intro(pc.bold(\"Uninstalling shell completions\"));\n\n  try {\n    await tabtab.uninstall({\n      name: CLI_NAME,\n    });\n\n    prompts.log.success(\"Shell completions uninstalled\");\n    prompts.outro(\"Done!\");\n  } catch (error) {\n    prompts.log.error(`Failed to uninstall completions: ${error}`);\n    prompts.outro(\"Uninstallation failed\");\n    process.exit(1);\n  }\n}\n\n/**\n * Prompt user to install completions if not already installed.\n * Used during 'init' command.\n * Returns true if completions were installed.\n */\nexport async function promptCompletionInstall(): Promise<boolean> {\n  if (isCompletionInstalled()) {\n    return false;\n  }\n\n  const shell = detectShell();\n  if (!shell) {\n    // Don't prompt if we can't detect the shell\n    return false;\n  }\n\n  const shouldInstall = await prompts.confirm({\n    message: `Install shell completions for ${shell}?`,\n  });\n\n  if (prompts.isCancel(shouldInstall) || !shouldInstall) {\n    prompts.log.info(`You can install later with: ${pc.cyan(\"agent-conf completion install\")}`);\n    return false;\n  }\n\n  try {\n    await installCompletionForShell(shell);\n\n    prompts.log.success(`Completions installed for ${pc.cyan(shell)}`);\n    prompts.log.info(\n      `Restart your shell or run: ${pc.cyan(`source ${getShellConfigFile(shell)}`)}`,\n    );\n    return true;\n  } catch (error) {\n    prompts.log.warn(`Could not install completions: ${error}`);\n    prompts.log.info(`You can try again with: ${pc.cyan(\"agent-conf completion install\")}`);\n    return false;\n  }\n}\n","import * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { createLogger } from \"../utils/logger.js\";\n\nexport type ConfigOptions = Record<string, never>;\n\nexport async function configShowCommand(): Promise<void> {\n  console.log();\n  prompts.intro(pc.bold(\"agent-conf config\"));\n\n  console.log();\n  console.log(pc.bold(\"Global Configuration:\"));\n  console.log();\n  console.log(pc.dim(\"  No configuration options available.\"));\n  console.log();\n  console.log(pc.dim(\"Config location: ~/.agent-conf/config.json\"));\n\n  prompts.outro(\"\");\n}\n\nexport async function configGetCommand(key: string): Promise<void> {\n  const logger = createLogger();\n  logger.error(`Unknown config key: ${key}`);\n  logger.info(\"No configuration options available.\");\n  process.exit(1);\n}\n\nexport async function configSetCommand(key: string, _value: string): Promise<void> {\n  const logger = createLogger();\n  logger.error(`Unknown config key: ${key}`);\n  logger.info(\"No configuration options available.\");\n  process.exit(1);\n}\n","import ora, { type Ora } from \"ora\";\nimport pc from \"picocolors\";\n\nexport interface Logger {\n  info(message: string): void;\n  success(message: string): void;\n  warn(message: string): void;\n  error(message: string): void;\n  dim(message: string): void;\n  spinner(text: string): Ora;\n}\n\nexport function createLogger(quiet = false): Logger {\n  return {\n    info(message: string) {\n      if (!quiet) {\n        console.log(`${pc.blue(\"info\")} ${message}`);\n      }\n    },\n\n    success(message: string) {\n      if (!quiet) {\n        console.log(`${pc.green(\"success\")} ${message}`);\n      }\n    },\n\n    warn(message: string) {\n      console.log(`${pc.yellow(\"warn\")} ${message}`);\n    },\n\n    error(message: string) {\n      console.error(`${pc.red(\"error\")} ${message}`);\n    },\n\n    dim(message: string) {\n      if (!quiet) {\n        console.log(pc.dim(message));\n      }\n    },\n\n    spinner(text: string): Ora {\n      if (quiet) {\n        return ora({ text, isSilent: true });\n      }\n      return ora({ text, color: \"blue\" });\n    },\n  };\n}\n\nexport function formatPath(p: string, cwd: string = process.cwd()): string {\n  if (p.startsWith(cwd)) {\n    return `.${p.slice(cwd.length)}`;\n  }\n  return p;\n}\n\nexport function formatDuration(ms: number): string {\n  if (ms < 1000) {\n    return `${ms}ms`;\n  }\n  return `${(ms / 1000).toFixed(1)}s`;\n}\n","import * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { getSyncStatus } from \"../core/sync.js\";\nimport { promptCompletionInstall } from \"./completion.js\";\nimport {\n  checkModifiedFilesBeforeSync,\n  parseAndValidateTargets,\n  performSync,\n  promptMergeOrOverride,\n  resolveSource,\n  resolveTargetDirectory,\n  resolveVersion,\n  type SharedSyncOptions,\n} from \"./shared.js\";\n\nexport interface InitOptions extends SharedSyncOptions {}\n\nexport async function initCommand(options: InitOptions): Promise<void> {\n  console.log();\n  prompts.intro(pc.bold(\"agent-conf init\"));\n\n  // Resolve target directory to git root\n  const targetDir = await resolveTargetDirectory();\n\n  // Parse targets\n  const targets = await parseAndValidateTargets(options.target);\n\n  // Check current status\n  const status = await getSyncStatus(targetDir);\n\n  // Prompt if already synced (init-specific behavior)\n  if (status.hasSynced && !options.yes) {\n    const shouldContinue = await prompts.confirm({\n      message: \"This repository has already been synced. Do you want to sync again?\",\n    });\n\n    if (prompts.isCancel(shouldContinue) || !shouldContinue) {\n      prompts.cancel(\"Operation cancelled\");\n      process.exit(0);\n    }\n  }\n\n  // Resolve version (fetches latest release if no --ref specified)\n  // For GitHub sources, pass the repo to fetch releases from\n  const resolvedVersion = await resolveVersion(options, status, \"init\", options.source);\n\n  // Resolve source using the determined version\n  const { resolvedSource, tempDir, repository } = await resolveSource(options, resolvedVersion);\n\n  // Determine merge behavior\n  const shouldOverride = await promptMergeOrOverride(status, options, tempDir);\n\n  // Check for modified skill files and warn\n  await checkModifiedFilesBeforeSync(targetDir, targets, options, tempDir);\n\n  // Perform sync (includes workflow files for release versions)\n  await performSync({\n    targetDir,\n    resolvedSource,\n    resolvedVersion,\n    shouldOverride,\n    targets,\n    context: {\n      commandName: \"init\",\n      status,\n    },\n    tempDir,\n    yes: options.yes,\n    sourceRepo: repository,\n  });\n\n  // Prompt to install shell completions (only if not in non-interactive mode)\n  if (!options.yes) {\n    await promptCompletionInstall();\n  }\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport fg from \"fast-glob\";\nimport type { Lockfile } from \"../schemas/lockfile.js\";\nimport { readLockfile, writeLockfile } from \"./lockfile.js\";\nimport { ensureClaudeMd, mergeAgentsMd, writeAgentsMd } from \"./merge.js\";\nimport {\n  addManagedMetadata,\n  type SkillValidationError,\n  validateSkillFrontmatter,\n} from \"./skill-metadata.js\";\nimport type { ResolvedSource } from \"./source.js\";\nimport { getTargetConfig, type Target, type TargetConfig } from \"./targets.js\";\n\nexport interface SyncOptions {\n  override: boolean;\n  targets: Target[];\n  /** Pinned version to record in lockfile */\n  pinnedVersion?: string;\n}\n\nexport interface TargetResult {\n  target: Target;\n  instructionsMd: {\n    created: boolean;\n    updated: boolean;\n    location: \"root\" | \"dotdir\" | null;\n    contentMerged: boolean;\n  };\n  skills: {\n    copied: number;\n  };\n}\n\nexport interface SyncResult {\n  lockfile: Lockfile;\n  agentsMd: {\n    merged: boolean;\n    preservedRepoContent: boolean;\n  };\n  targets: TargetResult[];\n  skills: {\n    synced: string[];\n    totalCopied: number;\n    validationErrors: SkillValidationError[];\n  };\n}\n\nexport async function sync(\n  targetDir: string,\n  resolvedSource: ResolvedSource,\n  options: SyncOptions = { override: false, targets: [\"claude\"] },\n): Promise<SyncResult> {\n  // Read global AGENTS.md content\n  const globalContent = await fs.readFile(resolvedSource.agentsMdPath, \"utf-8\");\n\n  // Merge/write AGENTS.md (also gathers existing CLAUDE.md content)\n  const mergeResult = await mergeAgentsMd(targetDir, globalContent, resolvedSource.source, {\n    override: options.override,\n  });\n  await writeAgentsMd(targetDir, mergeResult.content);\n\n  // Find all skill directories once\n  const skillDirs = await fg(\"*/\", {\n    cwd: resolvedSource.skillsPath,\n    onlyDirectories: true,\n    deep: 1,\n  });\n  const skillNames = skillDirs.map((d) => d.replace(/\\/$/, \"\"));\n\n  // Validate all skills have required frontmatter\n  const validationErrors: SkillValidationError[] = [];\n  for (const skillName of skillNames) {\n    const skillMdPath = path.join(resolvedSource.skillsPath, skillName, \"SKILL.md\");\n    try {\n      const content = await fs.readFile(skillMdPath, \"utf-8\");\n      const error = validateSkillFrontmatter(content, skillName, skillMdPath);\n      if (error) {\n        validationErrors.push(error);\n      }\n    } catch {\n      // Skip if SKILL.md doesn't exist (will be handled elsewhere)\n    }\n  }\n\n  // Process each target\n  const targetResults: TargetResult[] = [];\n  let totalCopied = 0;\n\n  for (const target of options.targets) {\n    const config = getTargetConfig(target);\n\n    // Sync skills to this target\n    const skillsCopied = await syncSkillsToTarget(\n      targetDir,\n      resolvedSource.skillsPath,\n      skillNames,\n      config,\n    );\n    totalCopied += skillsCopied;\n\n    // Only Claude needs an instructions file with @AGENTS.md reference\n    // Other targets (codex, etc.) read AGENTS.md directly\n    let instructionsResult: TargetResult[\"instructionsMd\"];\n    if (config.instructionsFile) {\n      instructionsResult = await ensureInstructionsMd(\n        targetDir,\n        config,\n        target === \"claude\" ? mergeResult.claudeMdLocation : null,\n      );\n    } else {\n      instructionsResult = {\n        created: false,\n        updated: false,\n        location: null,\n        contentMerged: false,\n      };\n    }\n\n    targetResults.push({\n      target,\n      instructionsMd: instructionsResult,\n      skills: { copied: skillsCopied },\n    });\n  }\n\n  // Write lockfile\n  const lockfileOptions: Parameters<typeof writeLockfile>[1] = {\n    source: resolvedSource.source,\n    globalBlockContent: globalContent,\n    skills: skillNames,\n    targets: options.targets,\n  };\n  if (options.pinnedVersion) {\n    lockfileOptions.pinnedVersion = options.pinnedVersion;\n  }\n  const lockfile = await writeLockfile(targetDir, lockfileOptions);\n\n  return {\n    lockfile,\n    agentsMd: {\n      merged: mergeResult.merged,\n      preservedRepoContent: mergeResult.preservedRepoContent,\n    },\n    targets: targetResults,\n    skills: {\n      synced: skillNames,\n      totalCopied,\n      validationErrors,\n    },\n  };\n}\n\nasync function syncSkillsToTarget(\n  targetDir: string,\n  sourceSkillsPath: string,\n  skillNames: string[],\n  config: TargetConfig,\n): Promise<number> {\n  const targetSkillsPath = path.join(targetDir, config.dir, \"skills\");\n  let copied = 0;\n\n  for (const skillName of skillNames) {\n    const sourceDir = path.join(sourceSkillsPath, skillName);\n    const targetSkillDir = path.join(targetSkillsPath, skillName);\n\n    const filesCopied = await copySkillDirectory(sourceDir, targetSkillDir);\n    copied += filesCopied;\n  }\n\n  return copied;\n}\n\n/**\n * Copy a skill directory, adding managed metadata to SKILL.md files.\n */\nasync function copySkillDirectory(sourceDir: string, targetDir: string): Promise<number> {\n  await fs.mkdir(targetDir, { recursive: true });\n\n  const entries = await fs.readdir(sourceDir, { withFileTypes: true });\n  let copied = 0;\n\n  for (const entry of entries) {\n    const sourcePath = path.join(sourceDir, entry.name);\n    const targetPath = path.join(targetDir, entry.name);\n\n    if (entry.isDirectory()) {\n      copied += await copySkillDirectory(sourcePath, targetPath);\n    } else if (entry.name === \"SKILL.md\") {\n      // Add managed metadata to SKILL.md files\n      const content = await fs.readFile(sourcePath, \"utf-8\");\n      const contentWithMetadata = addManagedMetadata(content);\n      await fs.writeFile(targetPath, contentWithMetadata, \"utf-8\");\n      copied++;\n    } else {\n      // Copy other files as-is\n      await fs.copyFile(sourcePath, targetPath);\n      copied++;\n    }\n  }\n\n  return copied;\n}\n\nasync function ensureInstructionsMd(\n  targetDir: string,\n  config: TargetConfig,\n  existingLocation: \"root\" | \"dotclaude\" | null,\n): Promise<{\n  created: boolean;\n  updated: boolean;\n  location: \"root\" | \"dotdir\" | null;\n  contentMerged: boolean;\n}> {\n  // Only Claude needs an instructions file\n  if (!config.instructionsFile) {\n    return { created: false, updated: false, location: null, contentMerged: false };\n  }\n\n  // Use the existing ensureClaudeMd logic for Claude\n  const result = await ensureClaudeMd(targetDir, existingLocation);\n  return {\n    created: result.created,\n    updated: result.updated,\n    location: result.location === \"dotclaude\" ? \"dotdir\" : result.location,\n    contentMerged: result.contentMerged,\n  };\n}\n\nexport interface SyncStatus {\n  hasSynced: boolean;\n  lockfile: Lockfile | null;\n  agentsMdExists: boolean;\n  skillsExist: boolean;\n}\n\nexport async function getSyncStatus(targetDir: string): Promise<SyncStatus> {\n  const lockfile = await readLockfile(targetDir);\n  const agentsMdPath = path.join(targetDir, \"AGENTS.md\");\n  const skillsPath = path.join(targetDir, \".claude\", \"skills\");\n\n  const [agentsMdExists, skillsExist] = await Promise.all([\n    fs\n      .access(agentsMdPath)\n      .then(() => true)\n      .catch(() => false),\n    fs\n      .access(skillsPath)\n      .then(() => true)\n      .catch(() => false),\n  ]);\n\n  return {\n    hasSynced: lockfile !== null,\n    lockfile,\n    agentsMdExists,\n    skillsExist,\n  };\n}\n\n/**\n * Find skills that were previously synced but are no longer in the current sync.\n */\nexport function findOrphanedSkills(previousSkills: string[], currentSkills: string[]): string[] {\n  return previousSkills.filter((skill) => !currentSkills.includes(skill));\n}\n\n/**\n * Delete orphaned skill directories from all targets.\n * Only deletes skills that:\n * 1. Are managed (have managed metadata in SKILL.md)\n * 2. AND either:\n *    - Content hash matches (skill hasn't been modified), OR\n *    - Skill was in the previous lockfile (confirming it was synced)\n *\n * This prevents accidentally deleting skills that were manually copied.\n */\nexport async function deleteOrphanedSkills(\n  targetDir: string,\n  orphanedSkills: string[],\n  targets: string[],\n  previouslyTrackedSkills: string[],\n): Promise<{ deleted: string[]; skipped: string[] }> {\n  const deleted: string[] = [];\n  const skipped: string[] = [];\n\n  for (const skillName of orphanedSkills) {\n    let wasDeleted = false;\n\n    for (const target of targets) {\n      const skillDir = path.join(targetDir, `.${target}`, \"skills\", skillName);\n\n      // Check if skill directory exists\n      try {\n        await fs.access(skillDir);\n      } catch {\n        continue; // Directory doesn't exist for this target\n      }\n\n      // Check if the skill is managed before deleting\n      const skillMdPath = path.join(skillDir, \"SKILL.md\");\n      try {\n        const content = await fs.readFile(skillMdPath, \"utf-8\");\n        const { isManaged, hasManualChanges } = await import(\"./skill-metadata.js\");\n\n        if (!isManaged(content)) {\n          // Not managed, skip deletion\n          if (!skipped.includes(skillName)) {\n            skipped.push(skillName);\n          }\n          continue;\n        }\n\n        // Additional safety check: only delete if either:\n        // 1. The skill was in the previous lockfile (confirming it was synced), OR\n        // 2. The content hash matches (skill hasn't been modified)\n        const wasInPreviousLockfile = previouslyTrackedSkills.includes(skillName);\n        const isUnmodified = !hasManualChanges(content);\n\n        if (!wasInPreviousLockfile && !isUnmodified) {\n          // Skill is managed but wasn't in lockfile and has been modified\n          // This could be a manually copied skill - skip to be safe\n          if (!skipped.includes(skillName)) {\n            skipped.push(skillName);\n          }\n          continue;\n        }\n      } catch {\n        // SKILL.md doesn't exist, skip deletion to be safe\n        if (!skipped.includes(skillName)) {\n          skipped.push(skillName);\n        }\n        continue;\n      }\n\n      // Delete the skill directory\n      await fs.rm(skillDir, { recursive: true, force: true });\n      wasDeleted = true;\n    }\n\n    if (wasDeleted && !deleted.includes(skillName)) {\n      deleted.push(skillName);\n    }\n  }\n\n  return { deleted, skipped };\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport type { Source } from \"../schemas/lockfile.js\";\nimport { buildAgentsMd, extractRepoBlockContent, parseAgentsMd } from \"./markers.js\";\n\nexport interface MergeOptions {\n  override: boolean;\n}\n\nexport interface MergeResult {\n  content: string;\n  merged: boolean;\n  preservedRepoContent: boolean;\n}\n\nexport interface ClaudeMdResult {\n  created: boolean;\n  updated: boolean;\n  location: \"root\" | \"dotclaude\" | null;\n  contentMerged: boolean;\n}\n\ninterface ExistingContent {\n  agentsMd: string | null;\n  claudeMd: string | null;\n  claudeMdLocation: \"root\" | \"dotclaude\" | null;\n}\n\nasync function readFileIfExists(filePath: string): Promise<string | null> {\n  try {\n    return await fs.readFile(filePath, \"utf-8\");\n  } catch (error) {\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\n      return null;\n    }\n    throw error;\n  }\n}\n\nasync function gatherExistingContent(targetDir: string): Promise<ExistingContent> {\n  const agentsMdPath = path.join(targetDir, \"AGENTS.md\");\n  const rootClaudeMdPath = path.join(targetDir, \"CLAUDE.md\");\n  const dotClaudeClaudeMdPath = path.join(targetDir, \".claude\", \"CLAUDE.md\");\n\n  const agentsMd = await readFileIfExists(agentsMdPath);\n\n  // Check root CLAUDE.md first, then .claude/CLAUDE.md\n  const rootClaudeMd = await readFileIfExists(rootClaudeMdPath);\n  if (rootClaudeMd !== null) {\n    return { agentsMd, claudeMd: rootClaudeMd, claudeMdLocation: \"root\" };\n  }\n\n  const dotClaudeClaudeMd = await readFileIfExists(dotClaudeClaudeMdPath);\n  if (dotClaudeClaudeMd !== null) {\n    return { agentsMd, claudeMd: dotClaudeClaudeMd, claudeMdLocation: \"dotclaude\" };\n  }\n\n  return { agentsMd, claudeMd: null, claudeMdLocation: null };\n}\n\nfunction stripAgentsReference(content: string): string {\n  // Remove @AGENTS.md, @../AGENTS.md, or @.claude/AGENTS.md references\n  return content\n    .split(\"\\n\")\n    .filter((line) => {\n      const trimmed = line.trim();\n      return !trimmed.match(/^@(\\.\\.\\/|\\.claude\\/)?AGENTS\\.md$/);\n    })\n    .join(\"\\n\")\n    .trim();\n}\n\nexport async function mergeAgentsMd(\n  targetDir: string,\n  globalContent: string,\n  _source: Source,\n  options: MergeOptions = { override: false },\n): Promise<\n  MergeResult & {\n    existingClaudeMdContent: string | null;\n    claudeMdLocation: \"root\" | \"dotclaude\" | null;\n  }\n> {\n  const existing = await gatherExistingContent(targetDir);\n\n  // Collect content to merge into repo block\n  const contentToMerge: string[] = [];\n\n  // Handle existing AGENTS.md\n  if (existing.agentsMd !== null && !options.override) {\n    const parsed = parseAgentsMd(existing.agentsMd);\n    if (parsed.hasMarkers) {\n      // Has markers - preserve repo block content\n      const repoContent = extractRepoBlockContent(parsed);\n      if (repoContent) {\n        contentToMerge.push(repoContent);\n      }\n    } else {\n      // No markers - treat entire content as repo-specific\n      contentToMerge.push(existing.agentsMd.trim());\n    }\n  }\n\n  // Handle existing CLAUDE.md content (merge into repo block)\n  let claudeMdContentForMerge: string | null = null;\n  if (existing.claudeMd !== null && !options.override) {\n    const strippedContent = stripAgentsReference(existing.claudeMd);\n    if (strippedContent) {\n      claudeMdContentForMerge = strippedContent;\n      contentToMerge.push(strippedContent);\n    }\n  }\n\n  // Build final repo content\n  const repoContent = contentToMerge.length > 0 ? contentToMerge.join(\"\\n\\n\") : null;\n  const content = buildAgentsMd(globalContent, repoContent, {});\n\n  const merged = !options.override && (existing.agentsMd !== null || existing.claudeMd !== null);\n  const preservedRepoContent = contentToMerge.length > 0;\n\n  return {\n    content,\n    merged,\n    preservedRepoContent,\n    existingClaudeMdContent: claudeMdContentForMerge,\n    claudeMdLocation: existing.claudeMdLocation,\n  };\n}\n\nexport async function writeAgentsMd(targetDir: string, content: string): Promise<void> {\n  const agentsMdPath = path.join(targetDir, \"AGENTS.md\");\n  await fs.writeFile(agentsMdPath, content, \"utf-8\");\n}\n\nexport async function ensureClaudeMd(\n  targetDir: string,\n  existingLocation: \"root\" | \"dotclaude\" | null,\n): Promise<ClaudeMdResult> {\n  // Determine where CLAUDE.md should be and what reference to use\n  // If there's an existing one, update it in place; otherwise create in .claude/\n  const rootPath = path.join(targetDir, \"CLAUDE.md\");\n  const dotClaudePath = path.join(targetDir, \".claude\", \"CLAUDE.md\");\n\n  // Reference paths (AGENTS.md is in root)\n  const rootReference = \"@AGENTS.md\";\n  const dotClaudeReference = \"@../AGENTS.md\";\n\n  if (existingLocation === \"root\") {\n    // Update root CLAUDE.md\n    const existingContent = await readFileIfExists(rootPath);\n    if (existingContent !== null) {\n      // Check if reference already exists\n      if (existingContent.includes(rootReference)) {\n        return { created: false, updated: false, location: \"root\", contentMerged: false };\n      }\n      // Content was already merged into AGENTS.md, just add the reference\n      await fs.writeFile(rootPath, `${rootReference}\\n`, \"utf-8\");\n      return { created: false, updated: true, location: \"root\", contentMerged: true };\n    }\n  }\n\n  if (existingLocation === \"dotclaude\") {\n    // Update .claude/CLAUDE.md\n    const existingContent = await readFileIfExists(dotClaudePath);\n    if (existingContent !== null) {\n      // Check if reference already exists\n      if (existingContent.includes(dotClaudeReference)) {\n        return { created: false, updated: false, location: \"dotclaude\", contentMerged: false };\n      }\n      // Content was already merged into AGENTS.md, just add the reference\n      await fs.writeFile(dotClaudePath, `${dotClaudeReference}\\n`, \"utf-8\");\n      return { created: false, updated: true, location: \"dotclaude\", contentMerged: true };\n    }\n  }\n\n  // No existing CLAUDE.md - create in .claude/\n  await fs.mkdir(path.dirname(dotClaudePath), { recursive: true });\n  await fs.writeFile(dotClaudePath, `${dotClaudeReference}\\n`, \"utf-8\");\n  return { created: true, updated: false, location: \"dotclaude\", contentMerged: false };\n}\n","export const SUPPORTED_TARGETS = [\"claude\", \"codex\"] as const;\nexport type Target = (typeof SUPPORTED_TARGETS)[number];\n\nexport interface TargetConfig {\n  /** Directory name (e.g., \".claude\", \".codex\") */\n  dir: string;\n  /** Instructions file name if target needs one (only Claude uses this) */\n  instructionsFile: string | null;\n}\n\nexport const TARGET_CONFIGS: Record<Target, TargetConfig> = {\n  claude: {\n    dir: \".claude\",\n    instructionsFile: \"CLAUDE.md\",\n  },\n  codex: {\n    dir: \".codex\",\n    instructionsFile: null, // Codex reads AGENTS.md directly\n  },\n};\n\nexport function isValidTarget(target: string): target is Target {\n  return SUPPORTED_TARGETS.includes(target as Target);\n}\n\nexport function parseTargets(input: string[]): Target[] {\n  const targets: Target[] = [];\n  for (const t of input) {\n    // Support comma-separated values\n    const parts = t.split(\",\").map((p) => p.trim().toLowerCase());\n    for (const part of parts) {\n      if (!isValidTarget(part)) {\n        throw new Error(\n          `Invalid target \"${part}\". Supported targets: ${SUPPORTED_TARGETS.join(\", \")}`,\n        );\n      }\n      if (!targets.includes(part)) {\n        targets.push(part);\n      }\n    }\n  }\n  return targets.length > 0 ? targets : [\"claude\"];\n}\n\nexport function getTargetConfig(target: Target): TargetConfig {\n  return TARGET_CONFIGS[target];\n}\n","import * as path from \"node:path\";\nimport * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { installPreCommitHook } from \"../core/hooks.js\";\nimport { readLockfile } from \"../core/lockfile.js\";\nimport { getModifiedManagedFiles } from \"../core/skill-metadata.js\";\nimport type { ResolvedSource } from \"../core/source.js\";\nimport { formatSourceString, resolveGithubSource, resolveLocalSource } from \"../core/source.js\";\nimport { deleteOrphanedSkills, findOrphanedSkills, type SyncStatus, sync } from \"../core/sync.js\";\nimport { getTargetConfig, parseTargets, SUPPORTED_TARGETS, type Target } from \"../core/targets.js\";\nimport {\n  formatTag,\n  getLatestRelease,\n  isVersionRef,\n  parseVersion,\n  type ReleaseInfo,\n} from \"../core/version.js\";\nimport { syncWorkflows, type WorkflowSyncResult } from \"../core/workflows.js\";\nimport { createTempDir, removeTempDir, resolvePath } from \"../utils/fs.js\";\nimport { getGitRoot } from \"../utils/git.js\";\nimport { createLogger, formatPath } from \"../utils/logger.js\";\n\nexport interface SharedSyncOptions {\n  source?: string;\n  local?: string | boolean;\n  yes?: boolean;\n  override?: boolean;\n  ref?: string;\n  target?: string[];\n  pinned?: boolean;\n}\n\nexport interface CommandContext {\n  commandName: \"init\" | \"sync\";\n  status: SyncStatus;\n}\n\nexport interface ResolvedVersion {\n  ref: string; // The ref used for cloning (e.g., \"v1.2.0\" or \"master\")\n  version: string | undefined; // The semantic version if ref is a release tag (e.g., \"1.2.0\")\n  isRelease: boolean; // Whether this is a release version\n  releaseInfo: ReleaseInfo | null; // Full release info if fetched\n}\n\nexport async function parseAndValidateTargets(\n  targetOptions: string[] | undefined,\n): Promise<Target[]> {\n  const logger = createLogger();\n  try {\n    return parseTargets(targetOptions ?? [\"claude\"]);\n  } catch (error) {\n    logger.error(error instanceof Error ? error.message : String(error));\n    logger.info(`Supported targets: ${SUPPORTED_TARGETS.join(\", \")}`);\n    process.exit(1);\n  }\n}\n\nexport async function resolveTargetDirectory(): Promise<string> {\n  const logger = createLogger();\n  const cwd = process.cwd();\n\n  const gitRoot = await getGitRoot(cwd);\n  if (!gitRoot) {\n    logger.error(\n      \"Not inside a git repository. Please run this command from within a git repository.\",\n    );\n    process.exit(1);\n  }\n\n  // If we're in a subdirectory, inform the user\n  if (gitRoot !== cwd) {\n    logger.info(`Syncing to repository root: ${formatPath(gitRoot)}`);\n  }\n\n  return gitRoot;\n}\n\n/**\n * Resolves the version to use for syncing.\n * - For init: fetches latest release if no ref specified\n * - For sync: uses lockfile version if no ref specified\n * - For explicit --ref: uses that ref\n *\n * @param repo - The repository to fetch releases from (only used for non-local sources)\n */\nexport async function resolveVersion(\n  options: SharedSyncOptions,\n  status: SyncStatus,\n  _commandName: \"init\" | \"sync\",\n  repo?: string,\n): Promise<ResolvedVersion> {\n  const logger = createLogger();\n\n  // If --local is used, no version management\n  if (options.local !== undefined) {\n    return {\n      ref: \"local\",\n      version: undefined,\n      isRelease: false,\n      releaseInfo: null,\n    };\n  }\n\n  // If explicit --ref is provided, use it\n  if (options.ref) {\n    if (isVersionRef(options.ref)) {\n      return {\n        ref: formatTag(options.ref),\n        version: parseVersion(options.ref),\n        isRelease: true,\n        releaseInfo: null,\n      };\n    }\n    // Branch ref\n    return {\n      ref: options.ref,\n      version: undefined,\n      isRelease: false,\n      releaseInfo: null,\n    };\n  }\n\n  // If --pinned is specified, use lockfile version without fetching\n  if (options.pinned) {\n    if (!status.lockfile?.pinned_version) {\n      logger.error(\"Cannot use --pinned: no version pinned in lockfile.\");\n      process.exit(1);\n    }\n    const version = status.lockfile.pinned_version;\n    return {\n      ref: formatTag(version),\n      version,\n      isRelease: true,\n      releaseInfo: null,\n    };\n  }\n\n  // Default for both init and sync: fetch latest release\n  // This requires a repo to be specified\n  if (!repo) {\n    // No repo means we can't fetch releases - use master as fallback\n    logger.warn(\"No source repository specified. Using master branch.\");\n    return {\n      ref: \"master\",\n      version: undefined,\n      isRelease: false,\n      releaseInfo: null,\n    };\n  }\n\n  const spinner = logger.spinner(\"Fetching latest release...\");\n  spinner.start();\n\n  try {\n    const release = await getLatestRelease(repo);\n    spinner.succeed(`Latest release: ${release.tag}`);\n    return {\n      ref: release.tag,\n      version: release.version,\n      isRelease: true,\n      releaseInfo: release,\n    };\n  } catch {\n    spinner.fail(\"Failed to fetch latest release, falling back to master\");\n    logger.warn(\"Could not fetch latest release. Using master branch instead.\");\n    return {\n      ref: \"master\",\n      version: undefined,\n      isRelease: false,\n      releaseInfo: null,\n    };\n  }\n}\n\nexport async function resolveSource(\n  options: SharedSyncOptions,\n  resolvedVersion: ResolvedVersion,\n): Promise<{ resolvedSource: ResolvedSource; tempDir: string | null; repository: string }> {\n  const logger = createLogger();\n  let resolvedSource: ResolvedSource;\n  let tempDir: string | null = null;\n\n  const spinner = logger.spinner(\"Resolving source...\");\n\n  try {\n    if (options.local !== undefined) {\n      spinner.start();\n      const localSourceOptions =\n        typeof options.local === \"string\" ? { path: resolvePath(options.local) } : {};\n      resolvedSource = await resolveLocalSource(localSourceOptions);\n      spinner.succeed(`Using local source: ${formatPath(resolvedSource.basePath)}`);\n      // For local sources, repository is empty string (no GitHub repo)\n      return { resolvedSource, tempDir, repository: \"\" };\n    }\n\n    // For GitHub sources, repository must be provided\n    const repository = options.source;\n    if (!repository) {\n      spinner.fail(\"No canonical source specified\");\n      logger.error(`No canonical source specified.\n\nSpecify a source using one of these methods:\n  1. CLI flag: agent-conf init --source acme/engineering-standards\n  2. Config file: Add 'source.repository' to .agent-conf.yaml\n\nExample .agent-conf.yaml:\n  source:\n    type: github\n    repository: acme/engineering-standards`);\n      process.exit(1);\n    }\n\n    spinner.start();\n    tempDir = await createTempDir();\n    const ref = resolvedVersion.ref;\n    spinner.text = `Cloning ${repository}@${ref}...`;\n    resolvedSource = await resolveGithubSource({ repository, ref }, tempDir);\n    spinner.succeed(`Cloned from GitHub: ${formatSourceString(resolvedSource.source)}`);\n    return { resolvedSource, tempDir, repository };\n  } catch (error) {\n    spinner.fail(\"Failed to resolve source\");\n    logger.error(error instanceof Error ? error.message : String(error));\n    if (tempDir) await removeTempDir(tempDir);\n    process.exit(1);\n  }\n}\n\nexport async function promptMergeOrOverride(\n  status: SyncStatus,\n  options: SharedSyncOptions,\n  tempDir: string | null,\n): Promise<boolean> {\n  let shouldOverride = options.override ?? false;\n\n  // If the repo has already been synced, the AGENTS.md was created by agent-conf,\n  // so we don't need to ask - just merge by default (unless --override is specified)\n  if (status.hasSynced) {\n    return shouldOverride;\n  }\n\n  if (status.agentsMdExists && !options.yes && !options.override) {\n    const action = await prompts.select({\n      message: \"An AGENTS.md file already exists. How would you like to proceed?\",\n      options: [\n        {\n          value: \"merge\",\n          label: \"Merge (recommended)\",\n          hint: \"Preserves your existing content in a repository-specific block\",\n        },\n        {\n          value: \"override\",\n          label: \"Override\",\n          hint: \"Replaces everything with fresh global standards\",\n        },\n      ],\n    });\n\n    if (prompts.isCancel(action)) {\n      prompts.cancel(\"Operation cancelled\");\n      if (tempDir) await removeTempDir(tempDir);\n      process.exit(0);\n    }\n\n    shouldOverride = action === \"override\";\n  }\n\n  return shouldOverride;\n}\n\n/**\n * Check for manually modified managed files and warn/prompt the user.\n * Returns true if sync should proceed, false if cancelled.\n */\nexport async function checkModifiedFilesBeforeSync(\n  targetDir: string,\n  targets: Target[],\n  options: SharedSyncOptions,\n  tempDir: string | null,\n): Promise<boolean> {\n  const modifiedFiles = await getModifiedManagedFiles(targetDir, targets);\n\n  if (modifiedFiles.length === 0) {\n    return true; // No modified files, proceed\n  }\n\n  const logger = createLogger();\n\n  // Show warning about modified files\n  console.log();\n  console.log(pc.yellow(`⚠ ${modifiedFiles.length} managed file(s) have been manually modified:`));\n  for (const file of modifiedFiles) {\n    const label = file.type === \"agents\" ? \"(global block)\" : \"\";\n    console.log(`  ${pc.yellow(\"~\")} ${file.path} ${pc.dim(label)}`);\n  }\n  console.log();\n\n  // In non-interactive mode, just warn and proceed\n  if (options.yes) {\n    logger.warn(\"Proceeding with sync (--yes flag). Modified files will be overwritten.\");\n    return true;\n  }\n\n  // Ask for confirmation\n  const proceed = await prompts.confirm({\n    message: \"These files will be overwritten. Continue with sync?\",\n    initialValue: false,\n  });\n\n  if (prompts.isCancel(proceed) || !proceed) {\n    prompts.cancel(\"Sync cancelled. Your modified files were preserved.\");\n    if (tempDir) await removeTempDir(tempDir);\n    process.exit(0);\n  }\n\n  return true;\n}\n\nexport interface PerformSyncOptions {\n  targetDir: string;\n  resolvedSource: ResolvedSource;\n  resolvedVersion: ResolvedVersion;\n  shouldOverride: boolean;\n  targets: Target[];\n  context: CommandContext;\n  tempDir: string | null;\n  yes?: boolean | undefined;\n  /** Source repository in owner/repo format (for GitHub sources) */\n  sourceRepo?: string;\n}\n\nexport async function performSync(options: PerformSyncOptions): Promise<void> {\n  const { targetDir, resolvedSource, resolvedVersion, shouldOverride, targets, context, tempDir } =\n    options;\n\n  const logger = createLogger();\n\n  // Read previous lockfile to detect orphaned skills later\n  const previousLockfile = await readLockfile(targetDir);\n  const previousSkills = previousLockfile?.content.skills ?? [];\n  const previousTargets = previousLockfile?.content.targets ?? [\"claude\"];\n\n  const syncSpinner = logger.spinner(\"Syncing...\");\n  syncSpinner.start();\n\n  try {\n    const syncOptions: Parameters<typeof sync>[2] = {\n      override: shouldOverride,\n      targets,\n    };\n    if (resolvedVersion.version) {\n      syncOptions.pinnedVersion = resolvedVersion.version;\n    }\n    const result = await sync(targetDir, resolvedSource, syncOptions);\n    syncSpinner.stop();\n\n    // Detect and handle orphaned skills\n    const orphanedSkills = findOrphanedSkills(previousSkills, result.skills.synced);\n    let orphanResult: { deleted: string[]; skipped: string[] } = { deleted: [], skipped: [] };\n\n    if (orphanedSkills.length > 0) {\n      // Determine which targets to check (union of previous and current)\n      const allTargets = [...new Set([...previousTargets, ...targets])];\n\n      if (options.yes) {\n        // Non-interactive mode: delete by default\n        orphanResult = await deleteOrphanedSkills(\n          targetDir,\n          orphanedSkills,\n          allTargets,\n          previousSkills,\n        );\n      } else {\n        // Interactive mode: prompt user\n        console.log();\n        console.log(\n          pc.yellow(\n            `⚠ ${orphanedSkills.length} skill(s) were previously synced but are no longer in the source:`,\n          ),\n        );\n        for (const skill of orphanedSkills) {\n          console.log(`  ${pc.yellow(\"·\")} ${skill}`);\n        }\n        console.log();\n\n        const deleteOrphans = await prompts.confirm({\n          message: \"Delete these orphaned skills?\",\n          initialValue: true,\n        });\n\n        if (prompts.isCancel(deleteOrphans)) {\n          // User cancelled, skip deletion but continue with sync summary\n          logger.info(\"Skipping orphan deletion.\");\n        } else if (deleteOrphans) {\n          orphanResult = await deleteOrphanedSkills(\n            targetDir,\n            orphanedSkills,\n            allTargets,\n            previousSkills,\n          );\n        }\n      }\n    }\n\n    // Show validation errors if any\n    if (result.skills.validationErrors.length > 0) {\n      console.log();\n      console.log(\n        pc.yellow(`⚠ ${result.skills.validationErrors.length} skill(s) have invalid frontmatter:`),\n      );\n      for (const error of result.skills.validationErrors) {\n        console.log(`  ${pc.yellow(\"!\")} ${error.skillName}/SKILL.md`);\n        for (const msg of error.errors) {\n          console.log(`      ${pc.dim(\"-\")} ${msg}`);\n        }\n      }\n      console.log();\n      console.log(pc.dim(\"Skills must have frontmatter with 'name' and 'description' fields.\"));\n    }\n\n    // Sync workflow files for GitHub sources only (not local)\n    // Workflows reference the same ref that was used for syncing\n    let workflowResult: WorkflowSyncResult | null = null;\n    if (resolvedVersion.ref !== \"local\" && options.sourceRepo) {\n      const workflowSpinner = logger.spinner(\"Syncing workflow files...\");\n      workflowSpinner.start();\n      // Use the version tag if it's a release, otherwise use the ref directly\n      const workflowRef =\n        resolvedVersion.isRelease && resolvedVersion.version\n          ? formatTag(resolvedVersion.version)\n          : resolvedVersion.ref;\n      workflowResult = await syncWorkflows(targetDir, workflowRef, options.sourceRepo);\n      workflowSpinner.stop();\n    }\n\n    // Install git hooks\n    const hookResult = await installPreCommitHook(targetDir);\n\n    // Summary\n    console.log();\n    console.log(pc.bold(\"Sync complete:\"));\n    console.log();\n\n    // AGENTS.md status\n    const agentsMdPath = formatPath(path.join(targetDir, \"AGENTS.md\"));\n    if (result.agentsMd.merged) {\n      const label = context.commandName === \"sync\" ? \"(updated)\" : \"(merged)\";\n      console.log(`  ${pc.green(\"+\")} ${agentsMdPath} ${pc.dim(label)}`);\n    } else {\n      console.log(`  ${pc.green(\"+\")} ${agentsMdPath} ${pc.dim(\"(created)\")}`);\n    }\n\n    // Per-target results\n    for (const targetResult of result.targets) {\n      const config = getTargetConfig(targetResult.target);\n\n      // Instructions file status (only for targets that use one, like Claude)\n      if (config.instructionsFile) {\n        const instructionsPath =\n          targetResult.instructionsMd.location === \"root\"\n            ? formatPath(path.join(targetDir, config.instructionsFile))\n            : formatPath(path.join(targetDir, config.dir, config.instructionsFile));\n\n        if (targetResult.instructionsMd.created) {\n          console.log(`  ${pc.green(\"+\")} ${instructionsPath} ${pc.dim(\"(created)\")}`);\n        } else if (targetResult.instructionsMd.updated) {\n          const hint = targetResult.instructionsMd.contentMerged\n            ? \"(content merged into AGENTS.md, reference added)\"\n            : \"(reference added)\";\n          console.log(`  ${pc.yellow(\"~\")} ${instructionsPath} ${pc.dim(hint)}`);\n        } else {\n          console.log(`  ${pc.dim(\"-\")} ${instructionsPath} ${pc.dim(\"(unchanged)\")}`);\n        }\n      }\n\n      // Skills status for this target\n      const skillsPath = formatPath(path.join(targetDir, config.dir, \"skills\"));\n      console.log(\n        `  ${pc.green(\"+\")} ${skillsPath}/ ${pc.dim(`(${result.skills.synced.length} skills, ${targetResult.skills.copied} files)`)}`,\n      );\n\n      // Orphan deletion status for this target\n      if (orphanResult.deleted.length > 0) {\n        for (const skill of orphanResult.deleted) {\n          const orphanPath = formatPath(path.join(targetDir, config.dir, \"skills\", skill));\n          console.log(\n            `  ${pc.red(\"-\")} ${orphanPath}/ ${pc.dim(\"(removed - no longer in source)\")}`,\n          );\n        }\n      }\n      if (orphanResult.skipped.length > 0) {\n        for (const skill of orphanResult.skipped) {\n          const orphanPath = formatPath(path.join(targetDir, config.dir, \"skills\", skill));\n          console.log(`  ${pc.yellow(\"!\")} ${orphanPath}/ ${pc.dim(\"(orphaned but skipped)\")}`);\n        }\n      }\n    }\n\n    // Workflow files status\n    if (workflowResult) {\n      for (const filename of workflowResult.created) {\n        const workflowPath = formatPath(path.join(targetDir, \".github/workflows\", filename));\n        console.log(`  ${pc.green(\"+\")} ${workflowPath} ${pc.dim(\"(created)\")}`);\n      }\n      for (const filename of workflowResult.updated) {\n        const workflowPath = formatPath(path.join(targetDir, \".github/workflows\", filename));\n        console.log(`  ${pc.yellow(\"~\")} ${workflowPath} ${pc.dim(\"(updated)\")}`);\n      }\n      for (const filename of workflowResult.unchanged) {\n        const workflowPath = formatPath(path.join(targetDir, \".github/workflows\", filename));\n        console.log(`  ${pc.dim(\"-\")} ${workflowPath} ${pc.dim(\"(unchanged)\")}`);\n      }\n    }\n\n    // Lockfile status\n    const lockfilePath = formatPath(path.join(targetDir, \".agent-conf\", \"agent-conf.lock\"));\n    console.log(`  ${pc.green(\"+\")} ${lockfilePath}`);\n\n    // Git hook status\n    const hookPath = formatPath(path.join(targetDir, \".git/hooks/pre-commit\"));\n    if (hookResult.installed) {\n      if (hookResult.alreadyExisted && !hookResult.wasUpdated) {\n        console.log(`  ${pc.dim(\"-\")} ${hookPath} ${pc.dim(\"(unchanged)\")}`);\n      } else if (hookResult.wasUpdated) {\n        console.log(`  ${pc.yellow(\"~\")} ${hookPath} ${pc.dim(\"(updated)\")}`);\n      } else {\n        console.log(`  ${pc.green(\"+\")} ${hookPath} ${pc.dim(\"(installed)\")}`);\n      }\n    } else if (hookResult.alreadyExisted) {\n      console.log(`  ${pc.yellow(\"!\")} ${hookPath} ${pc.dim(\"(skipped - custom hook exists)\")}`);\n    }\n\n    console.log();\n    console.log(pc.dim(`Source: ${formatSourceString(resolvedSource.source)}`));\n    if (resolvedVersion.version) {\n      console.log(pc.dim(`Version: ${resolvedVersion.version}`));\n    }\n    if (targets.length > 1) {\n      console.log(pc.dim(`Targets: ${targets.join(\", \")}`));\n    }\n\n    prompts.outro(pc.green(\"Done!\"));\n  } catch (error) {\n    syncSpinner.fail(\"Sync failed\");\n    logger.error(error instanceof Error ? error.message : String(error));\n    process.exit(1);\n  } finally {\n    if (tempDir) await removeTempDir(tempDir);\n  }\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport type { ResolvedConfig } from \"../config/schema.js\";\n\n// Default values for hook configuration\nconst DEFAULT_CLI_NAME = \"agent-conf\";\nconst DEFAULT_CONFIG_DIR = \".agent-conf\";\nconst DEFAULT_LOCKFILE_NAME = \"lockfile.json\";\n\n// Hook identifier for detecting managed hooks\nconst HOOK_IDENTIFIER = \"# agent-conf pre-commit hook\";\n\n/**\n * Configuration for hook generation.\n */\nexport interface HookConfig {\n  /** CLI command name (e.g., \"agent-conf\") */\n  cliName: string;\n  /** Config directory name (e.g., \".agent-conf\") */\n  configDir: string;\n  /** Lockfile name (e.g., \"lockfile.json\") */\n  lockfileName: string;\n}\n\n/**\n * Generate pre-commit hook content with configurable names.\n */\nexport function generatePreCommitHook(config: HookConfig): string {\n  const { cliName, configDir, lockfileName } = config;\n\n  return `#!/bin/bash\n# ${cliName} pre-commit hook\n# Prevents committing changes to managed files (skills and AGENTS.md global block)\n#\n# Installation:\n#   Copy this file to .git/hooks/pre-commit\n#   Or run: ${cliName} hooks install\n\nset -e\n\n# Get the repository root\nREPO_ROOT=$(git rev-parse --show-toplevel)\n\n# Check if ${cliName} has been synced\nif [ ! -f \"$REPO_ROOT/${configDir}/${lockfileName}\" ]; then\n    # Not synced, nothing to check\n    exit 0\nfi\n\n# Check if ${cliName} CLI is available\nif ! command -v ${cliName} &> /dev/null; then\n    # CLI not installed, skip check\n    exit 0\nfi\n\n# Run ${cliName} check and capture output\ncd \"$REPO_ROOT\"\nCHECK_OUTPUT=$(${cliName} check 2>&1) || CHECK_EXIT=$?\nCHECK_EXIT=\\${CHECK_EXIT:-0}\n\nif [ $CHECK_EXIT -ne 0 ]; then\n    echo \"\"\n    echo \"Error: Cannot commit changes to ${cliName}-managed files\"\n    echo \"\"\n    echo \"Output from '${cliName} check' command:\"\n    echo \"$CHECK_OUTPUT\"\n    echo \"\"\n    echo \"Options:\"\n    echo \"  1. Discard your changes: git checkout -- <file>\"\n    echo \"  2. Skip this check: git commit --no-verify\"\n    echo \"  3. Restore managed files: ${cliName} sync\"\n    echo \"  4. For AGENTS.md: edit only the repo-specific block (between repo:start and repo:end)\"\n    echo \"  5. For skills: create a new custom skill instead\"\n    echo \"\"\n    exit 1\nfi\n\nexit 0\n`;\n}\n\n/**\n * Get hook config from resolved config or use defaults.\n */\nexport function getHookConfig(config?: Partial<ResolvedConfig>): HookConfig {\n  return {\n    cliName: config?.cliName ?? DEFAULT_CLI_NAME,\n    configDir: config?.configDir ?? DEFAULT_CONFIG_DIR,\n    lockfileName: config?.lockfileName ?? DEFAULT_LOCKFILE_NAME,\n  };\n}\n\nexport interface HookInstallResult {\n  installed: boolean;\n  path: string;\n  alreadyExisted: boolean;\n  wasUpdated: boolean;\n}\n\n/**\n * Install the pre-commit hook in a git repository.\n * If a pre-commit hook already exists and is not from agent-conf, it will not be overwritten.\n */\nexport async function installPreCommitHook(\n  targetDir: string,\n  config?: Partial<ResolvedConfig>,\n): Promise<HookInstallResult> {\n  const hookConfig = getHookConfig(config);\n  const hooksDir = path.join(targetDir, \".git\", \"hooks\");\n  const hookPath = path.join(hooksDir, \"pre-commit\");\n\n  // Generate hook content\n  const hookContent = generatePreCommitHook(hookConfig);\n\n  // Ensure hooks directory exists\n  await fs.mkdir(hooksDir, { recursive: true });\n\n  // Check if hook already exists\n  let existingContent: string | null = null;\n  try {\n    existingContent = await fs.readFile(hookPath, \"utf-8\");\n  } catch {\n    // Hook doesn't exist\n  }\n\n  if (existingContent !== null) {\n    // Check if it's our hook (contains our identifier)\n    const isOurHook = existingContent.includes(HOOK_IDENTIFIER);\n\n    if (!isOurHook) {\n      // Not our hook, don't overwrite\n      return {\n        installed: false,\n        path: hookPath,\n        alreadyExisted: true,\n        wasUpdated: false,\n      };\n    }\n\n    // Check if content is the same\n    if (existingContent === hookContent) {\n      return {\n        installed: true,\n        path: hookPath,\n        alreadyExisted: true,\n        wasUpdated: false,\n      };\n    }\n\n    // Our hook but outdated, update it\n    await fs.writeFile(hookPath, hookContent, { mode: 0o755 });\n    return {\n      installed: true,\n      path: hookPath,\n      alreadyExisted: true,\n      wasUpdated: true,\n    };\n  }\n\n  // Install new hook\n  await fs.writeFile(hookPath, hookContent, { mode: 0o755 });\n  return {\n    installed: true,\n    path: hookPath,\n    alreadyExisted: false,\n    wasUpdated: false,\n  };\n}\n\n/**\n * Check if the pre-commit hook is installed.\n */\nexport async function isPreCommitHookInstalled(targetDir: string): Promise<boolean> {\n  const hookPath = path.join(targetDir, \".git\", \"hooks\", \"pre-commit\");\n\n  try {\n    const content = await fs.readFile(hookPath, \"utf-8\");\n    return content.includes(HOOK_IDENTIFIER);\n  } catch {\n    return false;\n  }\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport { type SimpleGit, simpleGit } from \"simple-git\";\nimport type { Source } from \"../schemas/lockfile.js\";\n\nexport interface ResolvedSource {\n  source: Source;\n  basePath: string;\n  agentsMdPath: string;\n  skillsPath: string;\n}\n\nexport interface LocalSourceOptions {\n  path?: string;\n}\n\nexport interface GithubSourceOptions {\n  repository: string;\n  ref: string;\n}\n\nconst DEFAULT_REF = \"master\";\n\nexport async function resolveLocalSource(\n  options: LocalSourceOptions = {},\n): Promise<ResolvedSource> {\n  let basePath: string;\n\n  if (options.path) {\n    basePath = path.resolve(options.path);\n  } else {\n    basePath = await findCanonicalRepo(process.cwd());\n  }\n\n  await validateCanonicalRepo(basePath);\n\n  const git: SimpleGit = simpleGit(basePath);\n  let commitSha: string | undefined;\n\n  try {\n    const log = await git.log({ maxCount: 1 });\n    commitSha = log.latest?.hash;\n  } catch {\n    // Not a git repo or git not available\n  }\n\n  const source: Source = {\n    type: \"local\",\n    path: basePath,\n    commit_sha: commitSha,\n  };\n\n  return {\n    source,\n    basePath,\n    agentsMdPath: path.join(basePath, \"instructions\", \"AGENTS.md\"),\n    skillsPath: path.join(basePath, \"skills\"),\n  };\n}\n\nexport async function resolveGithubSource(\n  options: GithubSourceOptions,\n  tempDir: string,\n): Promise<ResolvedSource> {\n  const { repository, ref = DEFAULT_REF } = options;\n  const repoUrl = `https://github.com/${repository}.git`;\n\n  const git: SimpleGit = simpleGit();\n  await git.clone(repoUrl, tempDir, [\"--depth\", \"1\", \"--branch\", ref]);\n\n  const clonedGit: SimpleGit = simpleGit(tempDir);\n  const log = await clonedGit.log({ maxCount: 1 });\n  const commitSha = log.latest?.hash ?? \"\";\n\n  const source: Source = {\n    type: \"github\",\n    repository,\n    commit_sha: commitSha,\n    ref,\n  };\n\n  return {\n    source,\n    basePath: tempDir,\n    agentsMdPath: path.join(tempDir, \"instructions\", \"AGENTS.md\"),\n    skillsPath: path.join(tempDir, \"skills\"),\n  };\n}\n\nasync function findCanonicalRepo(startDir: string): Promise<string> {\n  let currentDir = path.resolve(startDir);\n  const root = path.parse(currentDir).root;\n\n  // First, check if we're already inside the agent-conf repo\n  let checkDir = currentDir;\n  while (checkDir !== root) {\n    if (await isCanonicalRepo(checkDir)) {\n      return checkDir;\n    }\n    checkDir = path.dirname(checkDir);\n  }\n\n  // Otherwise, look for a sibling \"agent-conf\" directory\n  currentDir = path.resolve(startDir);\n  while (currentDir !== root) {\n    const parentDir = path.dirname(currentDir);\n    const siblingCanonicalRepo = path.join(parentDir, \"agent-conf\");\n\n    if (await isCanonicalRepo(siblingCanonicalRepo)) {\n      return siblingCanonicalRepo;\n    }\n\n    currentDir = parentDir;\n  }\n\n  throw new Error(\n    \"Could not find canonical repository. Please specify --local <path> or run from within the canonical repo.\",\n  );\n}\n\nasync function isCanonicalRepo(dir: string): Promise<boolean> {\n  try {\n    // Check directory exists\n    const stat = await fs.stat(dir).catch(() => null);\n    if (!stat?.isDirectory()) {\n      return false;\n    }\n\n    // Check for agent-conf structure\n    const instructionsPath = path.join(dir, \"instructions\", \"AGENTS.md\");\n    const skillsPath = path.join(dir, \"skills\");\n\n    const [instructionsExists, skillsExists] = await Promise.all([\n      fs\n        .access(instructionsPath)\n        .then(() => true)\n        .catch(() => false),\n      fs\n        .access(skillsPath)\n        .then(() => true)\n        .catch(() => false),\n    ]);\n\n    if (!instructionsExists || !skillsExists) {\n      return false;\n    }\n\n    // Optionally verify git remote contains \"agent-conf\"\n    try {\n      const git: SimpleGit = simpleGit(dir);\n      const remotes = await git.getRemotes(true);\n      const hasMatchingRemote = remotes.some(\n        (r) => r.refs.fetch?.includes(\"agent-conf\") || r.refs.push?.includes(\"agent-conf\"),\n      );\n      if (hasMatchingRemote) {\n        return true;\n      }\n    } catch {\n      // Git check failed, fall back to structure check only\n    }\n\n    // Structure matches, accept it even without git verification\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nasync function validateCanonicalRepo(basePath: string): Promise<void> {\n  const agentsMdPath = path.join(basePath, \"instructions\", \"AGENTS.md\");\n  const skillsPath = path.join(basePath, \"skills\");\n\n  const [agentsMdExists, skillsExists] = await Promise.all([\n    fs\n      .access(agentsMdPath)\n      .then(() => true)\n      .catch(() => false),\n    fs\n      .access(skillsPath)\n      .then(() => true)\n      .catch(() => false),\n  ]);\n\n  if (!agentsMdExists) {\n    throw new Error(`Invalid canonical repository: missing instructions/AGENTS.md at ${basePath}`);\n  }\n\n  if (!skillsExists) {\n    throw new Error(`Invalid canonical repository: missing skills/ directory at ${basePath}`);\n  }\n}\n\nexport function formatSourceString(source: Source): string {\n  if (source.type === \"github\") {\n    const sha = source.commit_sha.slice(0, 7);\n    return `github:${source.repository}@${sha}`;\n  }\n  if (source.commit_sha) {\n    return `local:${source.path}@${source.commit_sha.slice(0, 7)}`;\n  }\n  return `local:${source.path}`;\n}\n\nexport function getDefaultRef(): string {\n  return DEFAULT_REF;\n}\n","/**\n * Version resolution and management for agent-conf releases.\n *\n * Handles fetching release information from GitHub, parsing version strings,\n * and determining the appropriate version to use.\n */\n\nimport { execSync } from \"node:child_process\";\n\nconst GITHUB_API_BASE = \"https://api.github.com\";\n\n/**\n * Gets a GitHub token for API authentication.\n * Tries in order:\n * 1. GITHUB_TOKEN environment variable\n * 2. gh auth token (if gh CLI is installed)\n * Throws an error if no token is available.\n */\nfunction getGitHubToken(): string {\n  // First try environment variable\n  if (process.env.GITHUB_TOKEN) {\n    return process.env.GITHUB_TOKEN;\n  }\n\n  // Try gh CLI\n  try {\n    const token = execSync(\"gh auth token\", {\n      encoding: \"utf-8\",\n      stdio: [\"pipe\", \"pipe\", \"pipe\"],\n    }).trim();\n    if (token) {\n      return token;\n    }\n  } catch {\n    // gh CLI not available or not authenticated\n  }\n\n  throw new Error(\n    `GitHub authentication required to access agent-conf releases.\n\nTo fix this, do one of the following:\n\n1. Install and authenticate GitHub CLI (recommended):\n   brew install gh\n   gh auth login\n\n2. Set GITHUB_TOKEN environment variable:\n   export GITHUB_TOKEN=<your-personal-access-token>\n\n   Create a token at https://github.com/settings/tokens\n   with 'repo' scope for private repository access.`,\n  );\n}\n\n/**\n * Builds headers for GitHub API requests.\n * Includes Authorization header with required token.\n */\nfunction getGitHubHeaders(): Record<string, string> {\n  const token = getGitHubToken();\n  return {\n    Accept: \"application/vnd.github.v3+json\",\n    \"User-Agent\": \"agent-conf-cli\",\n    Authorization: `token ${token}`,\n  };\n}\n\nexport interface ReleaseInfo {\n  tag: string; // e.g., \"v1.2.0\"\n  version: string; // e.g., \"1.2.0\" (without 'v' prefix)\n  commitSha: string;\n  publishedAt: string;\n  tarballUrl: string;\n}\n\n/**\n * Fetches the latest release from a GitHub repository.\n */\nexport async function getLatestRelease(repo: string): Promise<ReleaseInfo> {\n  const url = `${GITHUB_API_BASE}/repos/${repo}/releases/latest`;\n\n  const response = await fetch(url, {\n    headers: getGitHubHeaders(),\n  });\n\n  if (!response.ok) {\n    if (response.status === 404) {\n      throw new Error(\"No releases found for agent-conf repository\");\n    }\n    throw new Error(`Failed to fetch latest release: ${response.statusText}`);\n  }\n\n  const data: unknown = await response.json();\n  return parseReleaseResponse(data as Record<string, unknown>);\n}\n\n/**\n * Fetches a specific release by tag from a GitHub repository.\n */\nexport async function getReleaseByTag(repo: string, tag: string): Promise<ReleaseInfo> {\n  // Ensure tag has 'v' prefix\n  const normalizedTag = tag.startsWith(\"v\") ? tag : `v${tag}`;\n  const url = `${GITHUB_API_BASE}/repos/${repo}/releases/tags/${normalizedTag}`;\n\n  const response = await fetch(url, {\n    headers: getGitHubHeaders(),\n  });\n\n  if (!response.ok) {\n    if (response.status === 404) {\n      throw new Error(`Release ${normalizedTag} not found`);\n    }\n    throw new Error(`Failed to fetch release ${normalizedTag}: ${response.statusText}`);\n  }\n\n  const data: unknown = await response.json();\n  return parseReleaseResponse(data as Record<string, unknown>);\n}\n\n/**\n * Lists all releases from a GitHub repository.\n */\nexport async function listReleases(repo: string, limit = 10): Promise<ReleaseInfo[]> {\n  const url = `${GITHUB_API_BASE}/repos/${repo}/releases?per_page=${limit}`;\n\n  const response = await fetch(url, {\n    headers: getGitHubHeaders(),\n  });\n\n  if (!response.ok) {\n    throw new Error(`Failed to fetch releases: ${response.statusText}`);\n  }\n\n  const data: unknown = await response.json();\n  return (data as Record<string, unknown>[]).map(parseReleaseResponse);\n}\n\n/**\n * Parses a GitHub release API response into ReleaseInfo.\n */\nfunction parseReleaseResponse(data: Record<string, unknown>): ReleaseInfo {\n  const tag = data.tag_name as string;\n  return {\n    tag,\n    version: parseVersion(tag),\n    commitSha: (data.target_commitish as string) || \"\",\n    publishedAt: data.published_at as string,\n    tarballUrl: data.tarball_url as string,\n  };\n}\n\n/**\n * Parses a version tag into a clean version string.\n * \"v1.2.0\" -> \"1.2.0\"\n * \"1.2.0\" -> \"1.2.0\"\n */\nexport function parseVersion(tag: string): string {\n  return tag.startsWith(\"v\") ? tag.slice(1) : tag;\n}\n\n/**\n * Formats a version string as a tag.\n * \"1.2.0\" -> \"v1.2.0\"\n * \"v1.2.0\" -> \"v1.2.0\"\n */\nexport function formatTag(version: string): string {\n  return version.startsWith(\"v\") ? version : `v${version}`;\n}\n\n/**\n * Checks if a ref is a version tag (e.g., \"v1.2.0\" or \"1.2.0\").\n */\nexport function isVersionRef(ref: string): boolean {\n  const normalized = ref.startsWith(\"v\") ? ref.slice(1) : ref;\n  return /^\\d+\\.\\d+\\.\\d+(-[\\w.]+)?$/.test(normalized);\n}\n\n/**\n * Checks if a ref is a branch name (e.g., \"master\", \"main\", \"develop\").\n */\nexport function isBranchRef(ref: string): boolean {\n  return !isVersionRef(ref);\n}\n\n/**\n * Resolves a ref to release info.\n * - \"latest\" -> fetches latest release\n * - \"v1.2.0\" or \"1.2.0\" -> fetches specific release\n * - \"master\" or other branch -> returns null (not a release)\n */\nexport async function resolveRef(repo: string, ref: string): Promise<ReleaseInfo | null> {\n  if (ref === \"latest\") {\n    return getLatestRelease(repo);\n  }\n\n  if (isVersionRef(ref)) {\n    return getReleaseByTag(repo, ref);\n  }\n\n  // Branch ref - not a release\n  return null;\n}\n\n/**\n * Compares two semantic versions.\n * Returns: -1 if a < b, 0 if a == b, 1 if a > b\n */\nexport function compareVersions(a: string, b: string): number {\n  const parseVer = (v: string) => {\n    const clean = v.startsWith(\"v\") ? v.slice(1) : v;\n    const [main, prerelease] = clean.split(\"-\");\n    const parts = (main ?? \"\").split(\".\").map(Number);\n    return { parts, prerelease };\n  };\n\n  const verA = parseVer(a);\n  const verB = parseVer(b);\n\n  // Compare major.minor.patch\n  for (let i = 0; i < 3; i++) {\n    const partA = verA.parts[i] || 0;\n    const partB = verB.parts[i] || 0;\n    if (partA < partB) return -1;\n    if (partA > partB) return 1;\n  }\n\n  // Handle prerelease (1.0.0-alpha < 1.0.0)\n  if (verA.prerelease && !verB.prerelease) return -1;\n  if (!verA.prerelease && verB.prerelease) return 1;\n  if (verA.prerelease && verB.prerelease) {\n    return verA.prerelease.localeCompare(verB.prerelease);\n  }\n\n  return 0;\n}\n\n/**\n * Gets the download URL for a CLI tarball from a release.\n */\nexport function getCliTarballUrl(repo: string, version: string): string {\n  const tag = formatTag(version);\n  return `https://github.com/${repo}/releases/download/${tag}/agent-conf-cli-${tag}.tar.gz`;\n}\n\n/**\n * Gets the download URL for the latest CLI tarball.\n */\nexport function getLatestCliTarballUrl(repo: string): string {\n  return `https://github.com/${repo}/releases/latest/download/agent-conf-cli.tar.gz`;\n}\n","/**\n * GitHub workflow file management for agent-conf.\n *\n * Handles creating, reading, and updating workflow files in downstream repositories.\n * These workflow files call the reusable workflows in the canonical repository.\n */\n\nimport * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport type { ResolvedConfig } from \"../config/schema.js\";\nimport { formatTag } from \"./version.js\";\n\n// Default values\nconst DEFAULT_CLI_NAME = \"agent-conf\";\nconst WORKFLOWS_DIR = \".github/workflows\";\n\n/**\n * Configuration for workflow generation.\n */\nexport interface WorkflowConfig {\n  /** Source repository in owner/repo format */\n  sourceRepo: string;\n  /** CLI command name */\n  cliName: string;\n  /** GitHub secret name for the token */\n  secretName: string;\n  /** Workflow filename prefix (e.g., \"agent-conf\" -> \"agent-conf-sync.yml\") */\n  workflowPrefix: string;\n}\n\n/**\n * Get workflow config from resolved config and source repo.\n * sourceRepo is required - there is no default content repository.\n */\nexport function getWorkflowConfig(\n  sourceRepo: string,\n  config?: Partial<ResolvedConfig>,\n): WorkflowConfig {\n  const name = config?.name ?? DEFAULT_CLI_NAME;\n  // Convert name to uppercase for secret name (e.g., \"agent-conf\" -> \"AGENT_CONF\")\n  const secretName = `${name.toUpperCase().replace(/-/g, \"_\")}_TOKEN`;\n\n  return {\n    sourceRepo,\n    cliName: config?.cliName ?? DEFAULT_CLI_NAME,\n    secretName,\n    workflowPrefix: name,\n  };\n}\n\nexport interface WorkflowFile {\n  name: string;\n  filename: string;\n  reusableWorkflow: string;\n}\n\n/**\n * Get workflow file definitions for a given config.\n */\nexport function getWorkflowFiles(config: WorkflowConfig): WorkflowFile[] {\n  const prefix = config.workflowPrefix;\n  return [\n    {\n      name: \"sync\",\n      filename: `${prefix}-sync.yml`,\n      reusableWorkflow: \"sync-reusable.yml\",\n    },\n    {\n      name: \"check\",\n      filename: `${prefix}-check.yml`,\n      reusableWorkflow: \"check-reusable.yml\",\n    },\n  ];\n}\n\nexport interface WorkflowStatus {\n  exists: boolean;\n  currentRef?: string;\n  isManaged: boolean;\n}\n\n/**\n * Gets the path to the workflows directory in a repository.\n */\nexport function getWorkflowsDir(repoRoot: string): string {\n  return path.join(repoRoot, WORKFLOWS_DIR);\n}\n\n/**\n * Gets the path to a specific workflow file.\n */\nexport function getWorkflowPath(repoRoot: string, filename: string): string {\n  return path.join(repoRoot, WORKFLOWS_DIR, filename);\n}\n\n/**\n * Checks the status of a workflow file.\n */\nexport async function getWorkflowStatus(\n  repoRoot: string,\n  workflow: WorkflowFile,\n  config: WorkflowConfig,\n): Promise<WorkflowStatus> {\n  const filePath = getWorkflowPath(repoRoot, workflow.filename);\n\n  try {\n    const content = await fs.readFile(filePath, \"utf-8\");\n    const currentRef = extractWorkflowRef(content, workflow.reusableWorkflow, config.sourceRepo);\n    const isManaged =\n      content.includes(`# Managed by ${config.cliName}`) || content.includes(config.sourceRepo);\n\n    const result: WorkflowStatus = { exists: true, isManaged };\n    if (currentRef !== undefined) result.currentRef = currentRef;\n    return result;\n  } catch {\n    return {\n      exists: false,\n      isManaged: false,\n    };\n  }\n}\n\n/**\n * Extracts the version ref from a workflow file content.\n * Looks for: uses: owner/repo/.github/workflows/name.yml@ref\n */\nexport function extractWorkflowRef(\n  content: string,\n  reusableWorkflow: string,\n  sourceRepo: string,\n): string | undefined {\n  const pattern = new RegExp(\n    `uses:\\\\s*${escapeRegex(sourceRepo)}\\\\/.github\\\\/workflows\\\\/${reusableWorkflow}@([^\\\\s]+)`,\n  );\n  const match = content.match(pattern);\n  return match?.[1];\n}\n\n/**\n * Updates the version ref in a workflow file content.\n */\nexport function updateWorkflowRef(\n  content: string,\n  reusableWorkflow: string,\n  newRef: string,\n  sourceRepo: string,\n): string {\n  const pattern = new RegExp(\n    `(uses:\\\\s*${escapeRegex(sourceRepo)}\\\\/.github\\\\/workflows\\\\/${reusableWorkflow})@[^\\\\s]+`,\n    \"g\",\n  );\n  return content.replace(pattern, `$1@${newRef}`);\n}\n\n/**\n * Generates the content for the sync workflow file.\n */\nexport function generateSyncWorkflow(versionRef: string, config: WorkflowConfig): string {\n  const { sourceRepo, cliName, secretName } = config;\n\n  return `# ${cliName} Auto-Sync Workflow\n# Managed by ${cliName} CLI - do not edit the version ref manually\n#\n# This workflow syncs standards from the central repository.\n# Version changes should be made using: ${cliName} sync --ref <version>\n#\n# TOKEN: Requires a PAT with read access to the source repository.\n# Create a fine-grained PAT at https://github.com/settings/tokens?type=beta\n# with read access to ${sourceRepo}, then add it as ${secretName} secret.\n\nname: ${cliName} Sync\n\non:\n  schedule:\n    - cron: '0 6 * * *'  # Daily at 6am UTC\n\n  workflow_dispatch:\n    inputs:\n      force:\n        description: 'Force sync even if no updates detected'\n        required: false\n        default: false\n        type: boolean\n\n  repository_dispatch:\n    types: [${cliName.replace(/-/g, \"_\")}-release]\n\nconcurrency:\n  group: ${cliName}-sync\n  cancel-in-progress: false\n\njobs:\n  sync:\n    uses: ${sourceRepo}/.github/workflows/sync-reusable.yml@${versionRef}\n    with:\n      force: \\${{ inputs.force || false }}\n      reviewers: \\${{ vars.${secretName.replace(/_TOKEN$/, \"_REVIEWERS\")} || '' }}\n    secrets:\n      token: \\${{ secrets.${secretName} }}\n`;\n}\n\n/**\n * Generates the content for the check workflow file.\n */\nexport function generateCheckWorkflow(versionRef: string, config: WorkflowConfig): string {\n  const { sourceRepo, cliName, secretName } = config;\n\n  return `# ${cliName} File Integrity Check\n# Managed by ${cliName} CLI - do not edit the version ref manually\n#\n# This workflow checks that ${cliName}-managed files haven't been modified.\n# Version changes should be made using: ${cliName} sync --ref <version>\n#\n# TOKEN: Requires a PAT with read access to the source repository.\n# Create a fine-grained PAT at https://github.com/settings/tokens?type=beta\n# with read access to ${sourceRepo}, then add it as ${secretName} secret.\n\nname: ${cliName} Check\n\non:\n  pull_request:\n    paths:\n      - '.claude/skills/**'\n      - '.codex/skills/**'\n      - 'AGENTS.md'\n  push:\n    paths:\n      - '.claude/skills/**'\n      - '.codex/skills/**'\n      - 'AGENTS.md'\n\njobs:\n  check:\n    uses: ${sourceRepo}/.github/workflows/check-reusable.yml@${versionRef}\n    secrets:\n      token: \\${{ secrets.${secretName} }}\n`;\n}\n\n/**\n * Generates workflow content for a specific workflow type.\n */\nexport function generateWorkflow(\n  workflow: WorkflowFile,\n  versionRef: string,\n  config: WorkflowConfig,\n): string {\n  switch (workflow.name) {\n    case \"sync\":\n      return generateSyncWorkflow(versionRef, config);\n    case \"check\":\n      return generateCheckWorkflow(versionRef, config);\n    default:\n      throw new Error(`Unknown workflow: ${workflow.name}`);\n  }\n}\n\n/**\n * Ensures the workflows directory exists.\n */\nexport async function ensureWorkflowsDir(repoRoot: string): Promise<void> {\n  const dir = getWorkflowsDir(repoRoot);\n  await fs.mkdir(dir, { recursive: true });\n}\n\n/**\n * Writes a workflow file to the repository.\n */\nexport async function writeWorkflow(\n  repoRoot: string,\n  workflow: WorkflowFile,\n  versionRef: string,\n  config: WorkflowConfig,\n): Promise<void> {\n  await ensureWorkflowsDir(repoRoot);\n  const filePath = getWorkflowPath(repoRoot, workflow.filename);\n  const content = generateWorkflow(workflow, versionRef, config);\n  await fs.writeFile(filePath, content, \"utf-8\");\n}\n\n/**\n * Updates the version ref in an existing workflow file.\n */\nexport async function updateWorkflowVersion(\n  repoRoot: string,\n  workflow: WorkflowFile,\n  newRef: string,\n  config: WorkflowConfig,\n): Promise<boolean> {\n  const filePath = getWorkflowPath(repoRoot, workflow.filename);\n\n  try {\n    const content = await fs.readFile(filePath, \"utf-8\");\n    const currentRef = extractWorkflowRef(content, workflow.reusableWorkflow, config.sourceRepo);\n\n    if (currentRef === newRef) {\n      return false; // No change needed\n    }\n\n    const updatedContent = updateWorkflowRef(\n      content,\n      workflow.reusableWorkflow,\n      newRef,\n      config.sourceRepo,\n    );\n    await fs.writeFile(filePath, updatedContent, \"utf-8\");\n    return true;\n  } catch {\n    // File doesn't exist, create it\n    await writeWorkflow(repoRoot, workflow, newRef, config);\n    return true;\n  }\n}\n\n/**\n * Result of syncing all workflow files.\n */\nexport interface WorkflowSyncResult {\n  created: string[];\n  updated: string[];\n  unchanged: string[];\n}\n\n/**\n * Syncs all workflow files to a specific version.\n * Always overwrites existing workflow files if they differ from the expected content.\n */\nexport async function syncWorkflows(\n  repoRoot: string,\n  versionRef: string,\n  sourceRepo: string,\n  resolvedConfig?: Partial<ResolvedConfig>,\n): Promise<WorkflowSyncResult> {\n  const config = getWorkflowConfig(sourceRepo, resolvedConfig);\n  const workflowFiles = getWorkflowFiles(config);\n\n  const result: WorkflowSyncResult = {\n    created: [],\n    updated: [],\n    unchanged: [],\n  };\n\n  for (const workflow of workflowFiles) {\n    const filePath = getWorkflowPath(repoRoot, workflow.filename);\n    const expectedContent = generateWorkflow(workflow, versionRef, config);\n\n    let existingContent: string | null = null;\n    try {\n      existingContent = await fs.readFile(filePath, \"utf-8\");\n    } catch {\n      // File doesn't exist\n    }\n\n    if (existingContent === null) {\n      // File doesn't exist, create it\n      await writeWorkflow(repoRoot, workflow, versionRef, config);\n      result.created.push(workflow.filename);\n    } else if (existingContent !== expectedContent) {\n      // File exists but differs from expected content, overwrite it\n      await writeWorkflow(repoRoot, workflow, versionRef, config);\n      result.updated.push(workflow.filename);\n    } else {\n      // File exists and matches expected content\n      result.unchanged.push(workflow.filename);\n    }\n  }\n\n  return result;\n}\n\n/**\n * Gets the current version ref from workflow files.\n * Returns the ref if all workflows have the same version, or undefined if mixed/missing.\n */\nexport async function getCurrentWorkflowVersion(\n  repoRoot: string,\n  sourceRepo: string,\n  resolvedConfig?: Partial<ResolvedConfig>,\n): Promise<string | undefined> {\n  const config = getWorkflowConfig(sourceRepo, resolvedConfig);\n  const workflowFiles = getWorkflowFiles(config);\n  const refs: (string | undefined)[] = [];\n\n  for (const workflow of workflowFiles) {\n    const status = await getWorkflowStatus(repoRoot, workflow, config);\n    refs.push(status.currentRef);\n  }\n\n  // Check if all refs are the same and defined\n  const uniqueRefs = [...new Set(refs.filter(Boolean))];\n  if (uniqueRefs.length === 1) {\n    return uniqueRefs[0];\n  }\n\n  return undefined;\n}\n\n/**\n * Formats a version for use as a workflow ref.\n * For version tags, uses the full tag (v1.2.0).\n * For branches, uses the branch name as-is.\n */\nexport function formatWorkflowRef(ref: string, isVersion: boolean): string {\n  if (isVersion) {\n    return formatTag(ref);\n  }\n  return ref;\n}\n\n/**\n * Escape special regex characters in a string.\n */\nfunction escapeRegex(str: string): string {\n  return str.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n}\n","import * as fs from \"node:fs/promises\";\nimport * as os from \"node:os\";\nimport * as path from \"node:path\";\n\nexport async function ensureDir(dirPath: string): Promise<void> {\n  await fs.mkdir(dirPath, { recursive: true });\n}\n\nexport async function fileExists(filePath: string): Promise<boolean> {\n  try {\n    await fs.access(filePath);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nexport async function directoryExists(dirPath: string): Promise<boolean> {\n  try {\n    const stat = await fs.stat(dirPath);\n    return stat.isDirectory();\n  } catch {\n    return false;\n  }\n}\n\nexport async function createTempDir(prefix: string = \"agent-conf-\"): Promise<string> {\n  const tmpDir = os.tmpdir();\n  return fs.mkdtemp(path.join(tmpDir, prefix));\n}\n\nexport async function removeTempDir(dirPath: string): Promise<void> {\n  try {\n    await fs.rm(dirPath, { recursive: true, force: true });\n  } catch {\n    // Ignore errors during cleanup\n  }\n}\n\nexport function resolvePath(inputPath: string): string {\n  if (inputPath.startsWith(\"~\")) {\n    return path.join(os.homedir(), inputPath.slice(1));\n  }\n  return path.resolve(inputPath);\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport { type SimpleGit, simpleGit } from \"simple-git\";\n\n/**\n * Check if a directory exists.\n */\nasync function directoryExistsForGit(dir: string): Promise<boolean> {\n  try {\n    const stat = await fs.stat(dir);\n    return stat.isDirectory();\n  } catch {\n    return false;\n  }\n}\n\nexport interface GitInfo {\n  isGitRepo: boolean;\n  branch?: string;\n  commitSha?: string;\n  isDirty?: boolean;\n}\n\nexport async function getGitInfo(dir: string): Promise<GitInfo> {\n  const git: SimpleGit = simpleGit(dir);\n\n  try {\n    const isRepo = await git.checkIsRepo();\n    if (!isRepo) {\n      return { isGitRepo: false };\n    }\n\n    const [branch, log, status] = await Promise.all([\n      git\n        .branch()\n        .then((b) => b.current)\n        .catch(() => undefined),\n      git\n        .log({ maxCount: 1 })\n        .then((l) => l.latest?.hash)\n        .catch(() => undefined),\n      git\n        .status()\n        .then((s) => !s.isClean())\n        .catch(() => undefined),\n    ]);\n\n    const result: GitInfo = { isGitRepo: true };\n    if (branch !== undefined) result.branch = branch;\n    if (log !== undefined) result.commitSha = log;\n    if (status !== undefined) result.isDirty = status;\n    return result;\n  } catch {\n    return { isGitRepo: false };\n  }\n}\n\nexport async function isGitRepo(dir: string): Promise<boolean> {\n  const git: SimpleGit = simpleGit(dir);\n  try {\n    return await git.checkIsRepo();\n  } catch {\n    return false;\n  }\n}\n\nexport async function getGitRoot(dir: string): Promise<string | null> {\n  if (!(await directoryExistsForGit(dir))) {\n    return null;\n  }\n  try {\n    const git: SimpleGit = simpleGit(dir);\n    const isRepo = await git.checkIsRepo();\n    if (!isRepo) {\n      return null;\n    }\n    // Get the root directory of the git repository\n    const root = await git.revparse([\"--show-toplevel\"]);\n    return root.trim();\n  } catch {\n    return null;\n  }\n}\n\n/**\n * Get the git project name (basename of the git root directory).\n * Returns null if not in a git repository or directory doesn't exist.\n */\nexport async function getGitProjectName(dir: string): Promise<string | null> {\n  const gitRoot = await getGitRoot(dir);\n  if (!gitRoot) {\n    return null;\n  }\n  return path.basename(gitRoot);\n}\n\n/**\n * Check if the given directory is the root of a git repository.\n * Returns false if directory doesn't exist.\n */\nexport async function isGitRoot(dir: string): Promise<boolean> {\n  if (!(await directoryExistsForGit(dir))) {\n    return false;\n  }\n  const gitRoot = await getGitRoot(dir);\n  if (!gitRoot) {\n    return false;\n  }\n  // Resolve real paths to handle symlinks (e.g., macOS /var -> /private/var)\n  try {\n    const realDir = await fs.realpath(dir);\n    const realGitRoot = await fs.realpath(gitRoot);\n    return realDir === realGitRoot;\n  } catch {\n    // Fallback to simple comparison if realpath fails\n    return path.resolve(dir) === path.resolve(gitRoot);\n  }\n}\n\n/**\n * Get git config value.\n * Returns undefined if directory doesn't exist, not in a git repo, or config not set.\n */\nexport async function getGitConfig(dir: string, key: string): Promise<string | undefined> {\n  if (!(await directoryExistsForGit(dir))) {\n    return undefined;\n  }\n  try {\n    const git: SimpleGit = simpleGit(dir);\n    const isRepo = await git.checkIsRepo();\n    if (!isRepo) {\n      return undefined;\n    }\n    const value = await git.getConfig(key);\n    return value.value ?? undefined;\n  } catch {\n    return undefined;\n  }\n}\n\n/**\n * Get organization name from git config or remote URL.\n * Returns undefined if directory doesn't exist or not in a git repo.\n * Tries to extract org from remote origin URL first, then falls back to user.name.\n */\nexport async function getGitOrganization(dir: string): Promise<string | undefined> {\n  if (!(await directoryExistsForGit(dir))) {\n    return undefined;\n  }\n  try {\n    const git: SimpleGit = simpleGit(dir);\n    const isRepo = await git.checkIsRepo();\n    if (!isRepo) {\n      return undefined;\n    }\n\n    // Try to extract organization from remote origin URL\n    const remotes = await git.getRemotes(true);\n    const origin = remotes.find((r) => r.name === \"origin\");\n    if (origin?.refs.fetch) {\n      const url = origin.refs.fetch;\n      // Match patterns like:\n      // https://github.com/org/repo.git\n      // git@github.com:org/repo.git\n      const httpsMatch = url.match(/github\\.com\\/([^/]+)\\//);\n      const sshMatch = url.match(/github\\.com:([^/]+)\\//);\n      const org = httpsMatch?.[1] ?? sshMatch?.[1];\n      if (org) {\n        return org;\n      }\n    }\n\n    // Fallback to user.name from git config\n    const userName = await git.getConfig(\"user.name\");\n    return userName.value ?? undefined;\n  } catch {\n    return undefined;\n  }\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { stringify as stringifyYaml } from \"yaml\";\nimport { directoryExists, ensureDir, fileExists } from \"../utils/fs.js\";\nimport { getGitOrganization, getGitProjectName, isGitRoot } from \"../utils/git.js\";\nimport { createLogger, formatPath } from \"../utils/logger.js\";\n\nexport interface InitCanonicalRepoOptions {\n  /** Canonical repo name */\n  name?: string | undefined;\n  /** Organization name */\n  org?: string | undefined;\n  /** Target directory (default: cwd) */\n  dir?: string | undefined;\n  /** Marker prefix (default: \"agent-conf\") */\n  markerPrefix?: string | undefined;\n  /** Include example skill (default: true) */\n  includeExamples?: boolean | undefined;\n  /** Non-interactive mode */\n  yes?: boolean | undefined;\n}\n\ninterface ResolvedOptions {\n  name: string;\n  organization?: string | undefined;\n  targetDir: string;\n  markerPrefix: string;\n  includeExamples: boolean;\n}\n\n/**\n * Generates the agent-conf.yaml configuration file content.\n */\nfunction generateConfigYaml(options: ResolvedOptions): string {\n  const config: Record<string, unknown> = {\n    version: \"1\",\n    meta: {\n      name: options.name,\n    },\n    content: {\n      instructions: \"instructions/AGENTS.md\",\n      skills_dir: \"skills\",\n    },\n    targets: [\"claude\"],\n    markers: {\n      prefix: options.markerPrefix,\n    },\n    merge: {\n      preserve_repo_content: true,\n    },\n  };\n\n  if (options.organization) {\n    (config.meta as Record<string, unknown>).organization = options.organization;\n  }\n\n  return stringifyYaml(config, { lineWidth: 0 });\n}\n\n/**\n * Generates a template AGENTS.md file.\n */\nfunction generateAgentsMd(options: ResolvedOptions): string {\n  const orgName = options.organization ?? \"Your Organization\";\n  return `# ${orgName} Engineering Standards for AI Agents\n\nThis document defines company-wide engineering standards that all AI coding agents must follow.\n\n## Purpose\n\nThese standards ensure consistency, maintainability, and operational excellence across all engineering projects.\n\n---\n\n## Development Principles\n\n### Code Quality\n\n- Write clean, readable code with meaningful names\n- Follow existing patterns in the codebase\n- Keep functions small and focused\n- Add comments only when the \"why\" isn't obvious\n\n### Testing\n\n- Write tests for new functionality\n- Ensure tests are deterministic and fast\n- Use descriptive test names\n\n---\n\n## Getting Started\n\nAdd your organization's specific engineering standards below.\n\n---\n\n**Version**: 1.0\n**Last Updated**: ${new Date().toISOString().split(\"T\")[0]}\n`;\n}\n\n/**\n * Generates an example skill SKILL.md file.\n */\nfunction generateExampleSkillMd(): string {\n  return `---\nname: example-skill\ndescription: An example skill demonstrating the skill format\n---\n\n# Example Skill\n\nThis is an example skill that demonstrates the skill format.\n\n## When to Use\n\nUse this skill when you need an example of how skills are structured.\n\n## Instructions\n\n1. Skills are defined in their own directories under \\`skills/\\`\n2. Each skill has a \\`SKILL.md\\` file with frontmatter\n3. The frontmatter must include \\`name\\` and \\`description\\`\n4. Optional: Include a \\`references/\\` directory for additional files\n\n## Example\n\n\\`\\`\\`\nskills/\n  example-skill/\n    SKILL.md\n    references/\n      .gitkeep\n\\`\\`\\`\n`;\n}\n\n/**\n * Generates the sync workflow file content.\n */\nfunction generateSyncWorkflow(repoFullName: string, prefix: string): string {\n  return `# ${prefix} Auto-Sync Workflow (Reusable)\n# This workflow is called by downstream repositories.\n#\n# Downstream repos will reference this workflow like:\n#   uses: ${repoFullName}/.github/workflows/sync-reusable.yml@v1.0.0\n\nname: Sync Reusable\n\non:\n  workflow_call:\n    inputs:\n      force:\n        description: 'Force sync even if no updates detected'\n        required: false\n        default: false\n        type: boolean\n      reviewers:\n        description: 'PR reviewers (comma-separated)'\n        required: false\n        type: string\n    secrets:\n      token:\n        description: 'GitHub token with repo access'\n        required: true\n\njobs:\n  sync:\n    runs-on: ubuntu-latest\n    steps:\n      - name: Checkout downstream repo\n        uses: actions/checkout@v4\n        with:\n          token: \\${{ secrets.token }}\n\n      - name: Setup Node.js\n        uses: actions/setup-node@v4\n        with:\n          node-version: '20'\n\n      - name: Install agent-conf CLI\n        run: npm install -g agent-conf\n\n      - name: Run sync\n        run: |\n          agent-conf sync --yes\n        env:\n          GITHUB_TOKEN: \\${{ secrets.token }}\n`;\n}\n\n/**\n * Generates the check workflow file content.\n */\nfunction generateCheckWorkflow(repoFullName: string, prefix: string): string {\n  return `# ${prefix} File Integrity Check (Reusable)\n# This workflow is called by downstream repositories.\n#\n# Downstream repos will reference this workflow like:\n#   uses: ${repoFullName}/.github/workflows/check-reusable.yml@v1.0.0\n\nname: Check Reusable\n\non:\n  workflow_call:\n    secrets:\n      token:\n        description: 'GitHub token with repo access'\n        required: true\n\njobs:\n  check:\n    runs-on: ubuntu-latest\n    steps:\n      - name: Checkout\n        uses: actions/checkout@v4\n        with:\n          token: \\${{ secrets.token }}\n\n      - name: Setup Node.js\n        uses: actions/setup-node@v4\n        with:\n          node-version: '20'\n\n      - name: Install agent-conf CLI\n        run: npm install -g agent-conf\n\n      - name: Check file integrity\n        run: |\n          agent-conf check\n`;\n}\n\nexport async function initCanonicalRepoCommand(options: InitCanonicalRepoOptions): Promise<void> {\n  const logger = createLogger();\n\n  console.log();\n  prompts.intro(pc.bold(\"agent-conf init-canonical-repo\"));\n\n  // Determine target directory\n  const targetDir = options.dir ? path.resolve(options.dir) : process.cwd();\n  const dirName = path.basename(targetDir);\n  const cwd = process.cwd();\n\n  // Compute smart defaults for name and organization\n  // Check both target dir and cwd for git info\n  // If target dir exists and is at git root, use that\n  // Otherwise, if cwd is at git root and target is cwd or a new subdir, use cwd's git info\n  let isAtGitRoot = await isGitRoot(targetDir);\n  let gitProjectName = await getGitProjectName(targetDir);\n  let gitOrganization = await getGitOrganization(targetDir);\n\n  // If target dir doesn't have git info, try cwd (useful when creating new dir inside git repo)\n  if (!gitProjectName) {\n    const cwdIsGitRoot = await isGitRoot(cwd);\n    const cwdGitProjectName = await getGitProjectName(cwd);\n    const cwdGitOrganization = await getGitOrganization(cwd);\n\n    // If cwd is a git root and target is cwd, use cwd's info\n    if (cwdIsGitRoot && path.resolve(targetDir) === path.resolve(cwd)) {\n      isAtGitRoot = true;\n      gitProjectName = cwdGitProjectName;\n      gitOrganization = cwdGitOrganization;\n    } else if (cwdGitOrganization && !gitOrganization) {\n      // At least use the organization from cwd if available\n      gitOrganization = cwdGitOrganization;\n    }\n  }\n\n  // Determine the default name suggestion\n  let defaultName: string;\n  let nameHint: string;\n  if (isAtGitRoot && gitProjectName) {\n    defaultName = gitProjectName;\n    nameHint = \" (from current git project)\";\n  } else {\n    defaultName = dirName;\n    nameHint = \"\";\n  }\n\n  // Check if directory exists and has content\n  const dirExists = await directoryExists(targetDir);\n  if (dirExists) {\n    const configExists = await fileExists(path.join(targetDir, \"agent-conf.yaml\"));\n    if (configExists && !options.yes) {\n      const shouldContinue = await prompts.confirm({\n        message: \"This directory already has an agent-conf.yaml. Overwrite?\",\n        initialValue: false,\n      });\n\n      if (prompts.isCancel(shouldContinue) || !shouldContinue) {\n        prompts.cancel(\"Operation cancelled\");\n        process.exit(0);\n      }\n    }\n  }\n\n  // Gather options (interactive or from CLI)\n  let resolvedOptions: ResolvedOptions;\n\n  if (options.yes) {\n    // Non-interactive mode: use defaults or provided values\n    resolvedOptions = {\n      name: options.name ?? defaultName,\n      organization: options.org ?? gitOrganization,\n      targetDir,\n      markerPrefix: options.markerPrefix ?? \"agent-conf\",\n      includeExamples: options.includeExamples !== false,\n    };\n  } else {\n    // Interactive mode: prompt for values\n    const name = await prompts.text({\n      message: `Canonical repository name${nameHint}:`,\n      placeholder: defaultName,\n      defaultValue: options.name ?? defaultName,\n      validate: (value) => {\n        if (!value.trim()) return \"Name is required\";\n        if (!/^[a-z0-9-]+$/.test(value)) return \"Name must be lowercase alphanumeric with hyphens\";\n        return undefined;\n      },\n    });\n\n    if (prompts.isCancel(name)) {\n      prompts.cancel(\"Operation cancelled\");\n      process.exit(0);\n    }\n\n    // Determine organization suggestion\n    const orgDefault = options.org ?? gitOrganization;\n    const orgHint = gitOrganization && !options.org ? \" (from git)\" : \"\";\n\n    const organization = await prompts.text({\n      message: `Organization name${orgHint} (optional):`,\n      placeholder: orgDefault ?? \"ACME Corp\",\n      ...(orgDefault ? { defaultValue: orgDefault } : {}),\n    });\n\n    if (prompts.isCancel(organization)) {\n      prompts.cancel(\"Operation cancelled\");\n      process.exit(0);\n    }\n\n    const markerPrefix = await prompts.text({\n      message: \"Marker prefix for managed content:\",\n      placeholder: \"agent-conf\",\n      defaultValue: options.markerPrefix ?? \"agent-conf\",\n      validate: (value) => {\n        if (!value.trim()) return \"Prefix is required\";\n        if (!/^[a-z0-9-]+$/.test(value))\n          return \"Prefix must be lowercase alphanumeric with hyphens\";\n        return undefined;\n      },\n    });\n\n    if (prompts.isCancel(markerPrefix)) {\n      prompts.cancel(\"Operation cancelled\");\n      process.exit(0);\n    }\n\n    const includeExamples = await prompts.confirm({\n      message: \"Include example skill?\",\n      initialValue: options.includeExamples !== false,\n    });\n\n    if (prompts.isCancel(includeExamples)) {\n      prompts.cancel(\"Operation cancelled\");\n      process.exit(0);\n    }\n\n    resolvedOptions = {\n      name: name as string,\n      organization: (organization as string) || undefined,\n      targetDir,\n      markerPrefix: markerPrefix as string,\n      includeExamples: includeExamples as boolean,\n    };\n  }\n\n  // Create directory structure\n  const spinner = logger.spinner(\"Creating canonical repository structure...\");\n  spinner.start();\n\n  try {\n    // Ensure target directory exists\n    await ensureDir(resolvedOptions.targetDir);\n\n    // Create directories\n    const instructionsDir = path.join(resolvedOptions.targetDir, \"instructions\");\n    const skillsDir = path.join(resolvedOptions.targetDir, \"skills\");\n    const workflowsDir = path.join(resolvedOptions.targetDir, \".github\", \"workflows\");\n\n    await ensureDir(instructionsDir);\n    await ensureDir(skillsDir);\n    await ensureDir(workflowsDir);\n\n    // Write agent-conf.yaml\n    const configPath = path.join(resolvedOptions.targetDir, \"agent-conf.yaml\");\n    await fs.writeFile(configPath, generateConfigYaml(resolvedOptions), \"utf-8\");\n\n    // Write AGENTS.md\n    const agentsMdPath = path.join(instructionsDir, \"AGENTS.md\");\n    await fs.writeFile(agentsMdPath, generateAgentsMd(resolvedOptions), \"utf-8\");\n\n    // Write example skill if requested\n    if (resolvedOptions.includeExamples) {\n      const exampleSkillDir = path.join(skillsDir, \"example-skill\");\n      const referencesDir = path.join(exampleSkillDir, \"references\");\n      await ensureDir(referencesDir);\n\n      const skillMdPath = path.join(exampleSkillDir, \"SKILL.md\");\n      await fs.writeFile(skillMdPath, generateExampleSkillMd(), \"utf-8\");\n\n      const gitkeepPath = path.join(referencesDir, \".gitkeep\");\n      await fs.writeFile(gitkeepPath, \"\", \"utf-8\");\n    }\n\n    // Write workflow files\n    const syncWorkflowPath = path.join(workflowsDir, \"sync-reusable.yml\");\n    const checkWorkflowPath = path.join(workflowsDir, \"check-reusable.yml\");\n\n    // Build repo full name for workflow references (org/name or just name if no org)\n    const repoFullName = resolvedOptions.organization\n      ? `${resolvedOptions.organization}/${resolvedOptions.name}`\n      : resolvedOptions.name;\n\n    await fs.writeFile(\n      syncWorkflowPath,\n      generateSyncWorkflow(repoFullName, resolvedOptions.markerPrefix),\n      \"utf-8\",\n    );\n    await fs.writeFile(\n      checkWorkflowPath,\n      generateCheckWorkflow(repoFullName, resolvedOptions.markerPrefix),\n      \"utf-8\",\n    );\n\n    spinner.succeed(\"Canonical repository structure created\");\n\n    // Summary\n    console.log();\n    console.log(pc.bold(\"Created:\"));\n    console.log(`  ${pc.green(\"+\")} ${formatPath(configPath)}`);\n    console.log(`  ${pc.green(\"+\")} ${formatPath(agentsMdPath)}`);\n    if (resolvedOptions.includeExamples) {\n      console.log(\n        `  ${pc.green(\"+\")} ${formatPath(path.join(skillsDir, \"example-skill/SKILL.md\"))}`,\n      );\n    }\n    console.log(`  ${pc.green(\"+\")} ${formatPath(syncWorkflowPath)}`);\n    console.log(`  ${pc.green(\"+\")} ${formatPath(checkWorkflowPath)}`);\n\n    console.log();\n    console.log(pc.dim(`Name: ${resolvedOptions.name}`));\n    if (resolvedOptions.organization) {\n      console.log(pc.dim(`Organization: ${resolvedOptions.organization}`));\n    }\n    console.log(pc.dim(`Marker prefix: ${resolvedOptions.markerPrefix}`));\n\n    console.log();\n    console.log(pc.bold(\"Next steps:\"));\n    console.log(`  1. Edit ${pc.cyan(\"instructions/AGENTS.md\")} with your engineering standards`);\n    console.log(`  2. Add skills to ${pc.cyan(\"skills/\")} directory`);\n    console.log(`  3. Commit and push to create your canonical repository`);\n    console.log();\n    console.log(\n      pc.dim(\n        `See https://github.com/julian-pani/agent-conf/blob/master/cli/docs/CANONICAL_REPOSITORY_SETUP.md for detailed setup instructions.`,\n      ),\n    );\n\n    prompts.outro(pc.green(\"Done!\"));\n  } catch (error) {\n    spinner.fail(\"Failed to create canonical repository\");\n    logger.error(error instanceof Error ? error.message : String(error));\n    process.exit(1);\n  }\n}\n","import * as path from \"node:path\";\nimport pc from \"picocolors\";\nimport { checkAllManagedFiles } from \"../core/skill-metadata.js\";\nimport { formatSourceString } from \"../core/source.js\";\nimport { getSyncStatus } from \"../core/sync.js\";\nimport { formatPath } from \"../utils/logger.js\";\n\nexport interface StatusOptions {\n  check?: boolean;\n}\n\nexport async function statusCommand(options: StatusOptions = {}): Promise<void> {\n  const targetDir = process.cwd();\n  const status = await getSyncStatus(targetDir);\n\n  console.log();\n  console.log(pc.bold(\"agent-conf sync status\"));\n  console.log();\n\n  if (!status.hasSynced) {\n    console.log(pc.yellow(\"Not synced\"));\n    console.log();\n    console.log(pc.dim(\"Run `agent-conf init` to sync engineering standards to this repository.\"));\n    console.log();\n    return;\n  }\n\n  const lockfile = status.lockfile!;\n\n  console.log(`${pc.green(\"Synced\")}`);\n  console.log();\n\n  // Source info\n  console.log(pc.bold(\"Source:\"));\n  console.log(`  ${formatSourceString(lockfile.source)}`);\n  console.log();\n\n  // Sync timestamp\n  console.log(pc.bold(\"Last synced:\"));\n  const syncedAt = new Date(lockfile.synced_at);\n  console.log(`  ${syncedAt.toLocaleString()}`);\n  console.log();\n\n  // Content\n  console.log(pc.bold(\"Content:\"));\n  console.log(`  AGENTS.md: ${status.agentsMdExists ? pc.green(\"present\") : pc.red(\"missing\")}`);\n  console.log(`  Skills: ${lockfile.content.skills.length} synced`);\n  if (lockfile.content.skills.length > 0) {\n    for (const skill of lockfile.content.skills) {\n      console.log(`    - ${skill}`);\n    }\n  }\n  console.log();\n\n  // Check for modified files if --check flag is provided\n  if (options.check) {\n    const targets = lockfile.content.targets ?? [\"claude\"];\n    const allFiles = await checkAllManagedFiles(targetDir, targets);\n    const modifiedFiles = allFiles.filter((f) => f.hasChanges);\n\n    console.log(pc.bold(\"File integrity:\"));\n    if (modifiedFiles.length === 0) {\n      console.log(`  ${pc.green(\"✓\")} All managed files are unchanged`);\n    } else {\n      console.log(`  ${pc.yellow(\"!\")} ${modifiedFiles.length} file(s) manually modified:`);\n      for (const file of modifiedFiles) {\n        const label = file.type === \"agents\" ? \"(global block)\" : \"\";\n        console.log(`    ${pc.yellow(\"~\")} ${file.path} ${pc.dim(label)}`);\n      }\n      console.log();\n      console.log(pc.dim(\"  These files will be overwritten on next sync. To preserve changes,\"));\n      console.log(pc.dim(\"  copy them elsewhere before running `agent-conf sync`.\"));\n    }\n    console.log();\n  }\n\n  // Lockfile location\n  const lockfilePath = formatPath(path.join(targetDir, \".agent-conf\", \"agent-conf.lock\"));\n  console.log(pc.dim(`Lock file: ${lockfilePath}`));\n  console.log(pc.dim(`CLI version: ${lockfile.cli_version}`));\n  console.log();\n}\n","import * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { getSyncStatus } from \"../core/sync.js\";\nimport { compareVersions } from \"../core/version.js\";\nimport { createLogger } from \"../utils/logger.js\";\nimport {\n  checkModifiedFilesBeforeSync,\n  parseAndValidateTargets,\n  performSync,\n  promptMergeOrOverride,\n  resolveSource,\n  resolveTargetDirectory,\n  resolveVersion,\n  type SharedSyncOptions,\n} from \"./shared.js\";\n\nexport interface SyncOptions extends SharedSyncOptions {}\n\nexport async function syncCommand(options: SyncOptions): Promise<void> {\n  const logger = createLogger();\n\n  console.log();\n  prompts.intro(pc.bold(\"agent-conf sync\"));\n\n  // Validate mutually exclusive flags\n  if (options.pinned && options.ref) {\n    logger.error(\"Cannot use --pinned with --ref. Choose one.\");\n    process.exit(1);\n  }\n  if (options.pinned && options.local !== undefined) {\n    logger.error(\"Cannot use --pinned with --local.\");\n    process.exit(1);\n  }\n\n  // Resolve target directory to git root\n  const targetDir = await resolveTargetDirectory();\n\n  // Parse targets\n  const targets = await parseAndValidateTargets(options.target);\n\n  // Check current status (informational only, no confirmation prompt)\n  const status = await getSyncStatus(targetDir);\n\n  if (!status.hasSynced) {\n    logger.warn(\n      \"This repository has not been synced yet. Consider running 'agent-conf init' first.\",\n    );\n  }\n\n  // For sync command, try to get source from:\n  // 1. --source flag (highest priority)\n  // 2. Lockfile's recorded source\n  let sourceRepo = options.source;\n  if (!sourceRepo && status.lockfile?.source.type === \"github\") {\n    sourceRepo = status.lockfile.source.repository;\n  }\n\n  // Resolve version (fetches latest by default, unless --pinned or --ref)\n  const resolvedVersion = await resolveVersion(options, status, \"sync\", sourceRepo);\n\n  // Check if already up to date (when fetching latest, not --pinned or --ref)\n  if (!options.pinned && !options.ref && !options.local && status.lockfile?.pinned_version) {\n    const currentVersion = status.lockfile.pinned_version;\n\n    if (resolvedVersion.version) {\n      const comparison = compareVersions(currentVersion, resolvedVersion.version);\n\n      // Display version info\n      console.log();\n      console.log(`Canonical source: ${pc.cyan(sourceRepo)}`);\n      console.log(`Latest release: ${pc.cyan(resolvedVersion.version)}`);\n      console.log(`Pinned version: ${pc.cyan(currentVersion)}`);\n\n      if (comparison >= 0) {\n        // Current version is equal or newer\n        console.log(`  ${pc.green(\"✓\")} Up to date`);\n        console.log();\n        prompts.outro(pc.green(\"Already up to date!\"));\n        return;\n      }\n\n      // Update available\n      console.log(\n        `  ${pc.yellow(\"→\")} Update available: ${currentVersion} → ${resolvedVersion.version}`,\n      );\n      console.log();\n\n      // Confirm update\n      if (!options.yes) {\n        const shouldUpdate = await prompts.confirm({\n          message: \"Proceed with update?\",\n          initialValue: true,\n        });\n\n        if (prompts.isCancel(shouldUpdate) || !shouldUpdate) {\n          prompts.cancel(\"Sync cancelled\");\n          process.exit(0);\n        }\n      }\n    }\n  }\n\n  // If --ref was specified, inform user about version change\n  if (options.ref && status.lockfile?.pinned_version) {\n    const currentVersion = status.lockfile.pinned_version;\n    if (resolvedVersion.version && currentVersion !== resolvedVersion.version) {\n      logger.info(`Updating version: ${currentVersion} → ${resolvedVersion.version}`);\n    }\n  }\n\n  // Pass the resolved source to options for resolveSource\n  const optionsWithSource: SyncOptions = sourceRepo ? { ...options, source: sourceRepo } : options;\n\n  // Resolve source using the determined version\n  const { resolvedSource, tempDir, repository } = await resolveSource(\n    optionsWithSource,\n    resolvedVersion,\n  );\n\n  // Determine merge behavior\n  const shouldOverride = await promptMergeOrOverride(status, options, tempDir);\n\n  // Check for modified skill files and warn\n  await checkModifiedFilesBeforeSync(targetDir, targets, options, tempDir);\n\n  // Perform sync (includes workflow files for release versions)\n  await performSync({\n    targetDir,\n    resolvedSource,\n    resolvedVersion,\n    shouldOverride,\n    targets,\n    context: {\n      commandName: \"sync\",\n      status,\n    },\n    tempDir,\n    yes: options.yes,\n    sourceRepo: repository,\n  });\n}\n","import { execSync } from \"node:child_process\";\nimport * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { getCliVersion } from \"../core/lockfile.js\";\nimport { compareVersions } from \"../core/version.js\";\nimport { createLogger } from \"../utils/logger.js\";\n\nconst NPM_PACKAGE_NAME = \"agent-conf\";\n\nexport interface UpgradeCliOptions {\n  yes?: boolean;\n}\n\n/**\n * Fetches the latest version from the npm registry.\n */\nasync function getLatestNpmVersion(): Promise<string> {\n  const response = await fetch(`https://registry.npmjs.org/${NPM_PACKAGE_NAME}/latest`);\n\n  if (!response.ok) {\n    throw new Error(`Failed to fetch package info: ${response.statusText}`);\n  }\n\n  const data = (await response.json()) as { version: string };\n  return data.version;\n}\n\nexport async function upgradeCliCommand(options: UpgradeCliOptions): Promise<void> {\n  const logger = createLogger();\n  const currentVersion = getCliVersion();\n\n  console.log();\n  prompts.intro(pc.bold(\"agent-conf upgrade-cli\"));\n\n  // Check for updates\n  const spinner = logger.spinner(\"Checking for CLI updates...\");\n  spinner.start();\n\n  let latestVersion: string;\n  try {\n    latestVersion = await getLatestNpmVersion();\n    spinner.stop();\n  } catch (error) {\n    spinner.fail(\"Failed to check for CLI updates\");\n    logger.error(error instanceof Error ? error.message : String(error));\n    process.exit(1);\n  }\n\n  // Display version info\n  console.log();\n  console.log(`Current version: ${pc.cyan(currentVersion)}`);\n  console.log(`Latest version:  ${pc.cyan(latestVersion)}`);\n\n  // Check if update is needed\n  const needsUpdate = compareVersions(currentVersion, latestVersion) < 0;\n\n  if (!needsUpdate) {\n    console.log();\n    prompts.outro(pc.green(\"CLI is already up to date!\"));\n    return;\n  }\n\n  console.log();\n  console.log(`${pc.yellow(\"→\")} Update available: ${currentVersion} → ${latestVersion}`);\n  console.log();\n\n  // Confirm update\n  if (!options.yes) {\n    const shouldUpdate = await prompts.confirm({\n      message: \"Proceed with CLI upgrade?\",\n      initialValue: true,\n    });\n\n    if (prompts.isCancel(shouldUpdate) || !shouldUpdate) {\n      prompts.cancel(\"Upgrade cancelled\");\n      process.exit(0);\n    }\n  }\n\n  // Perform upgrade\n  const installSpinner = logger.spinner(\"Upgrading CLI...\");\n  installSpinner.start();\n\n  try {\n    execSync(`npm install -g ${NPM_PACKAGE_NAME}@latest`, {\n      stdio: \"pipe\",\n    });\n    installSpinner.succeed(\"CLI upgraded\");\n\n    console.log();\n    prompts.outro(pc.green(`CLI upgraded to ${latestVersion}!`));\n  } catch (error) {\n    installSpinner.fail(\"Upgrade failed\");\n    logger.error(error instanceof Error ? error.message : String(error));\n    logger.info(`\\nYou can try manually: npm install -g ${NPM_PACKAGE_NAME}@latest`);\n    process.exit(1);\n  }\n}\n","import { createCli } from \"./cli.js\";\n\nconst cli = 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+{"version":3,"sources":["../src/cli.ts","../src/commands/check.ts","../src/core/lockfile.ts","../src/schemas/lockfile.ts","../src/commands/completion.ts","../src/commands/config.ts","../src/utils/logger.ts","../src/commands/init.ts","../src/core/sync.ts","../src/core/merge.ts","../src/core/targets.ts","../src/commands/shared.ts","../src/core/hooks.ts","../src/core/source.ts","../src/core/version.ts","../src/core/workflows.ts","../src/utils/fs.ts","../src/utils/git.ts","../src/commands/init-canonical-repo.ts","../src/commands/status.ts","../src/commands/sync.ts","../src/commands/upgrade-cli.ts","../src/index.ts"],"sourcesContent":["import { Command } from \"commander\";\nimport pc from \"picocolors\";\nimport { checkCommand } from \"./commands/check.js\";\nimport { handleCompletion, installCompletion, uninstallCompletion } from \"./commands/completion.js\";\nimport { configGetCommand, configSetCommand, configShowCommand } from \"./commands/config.js\";\nimport { initCommand } from \"./commands/init.js\";\nimport { initCanonicalRepoCommand } from \"./commands/init-canonical-repo.js\";\nimport { statusCommand } from \"./commands/status.js\";\nimport { syncCommand } from \"./commands/sync.js\";\nimport { upgradeCliCommand } from \"./commands/upgrade-cli.js\";\nimport { checkCliVersionMismatch, getCliVersion } from \"./core/lockfile.js\";\nimport { getGitRoot } from \"./utils/git.js\";\n\n// Handle shell completion requests before anything else\n// This must happen synchronously at module load time\nif (handleCompletion()) {\n  process.exit(0);\n}\n\n/**\n * Checks if the installed CLI is outdated compared to the lockfile's source commit.\n * Shows a warning if they don't match.\n */\nasync function warnIfCliOutdated(): Promise<void> {\n  try {\n    const cwd = process.cwd();\n    const gitRoot = await getGitRoot(cwd);\n    if (!gitRoot) return;\n\n    const mismatch = await checkCliVersionMismatch(gitRoot);\n    if (mismatch) {\n      console.log();\n      console.log(\n        pc.yellow(\n          `⚠ CLI is outdated: built from ${mismatch.cliCommit}, but repo was synced from ${mismatch.lockfileCommit}`,\n        ),\n      );\n      console.log(\n        pc.yellow(\n          \"  Rebuild the CLI: cd <agent-conf-repo>/cli && pnpm build && pnpm link --global\",\n        ),\n      );\n      console.log();\n    }\n  } catch {\n    // Silently ignore errors - this is a best-effort check\n  }\n}\n\nexport function createCli(): Command {\n  const program = new Command();\n\n  program\n    .name(\"agent-conf\")\n    .description(\"Sync company engineering standards from agent-conf repository\")\n    .version(getCliVersion())\n    .hook(\"preAction\", async () => {\n      await warnIfCliOutdated();\n    });\n\n  program\n    .command(\"init\")\n    .description(\"Initialize or sync agent-conf standards to the current repository\")\n    .option(\n      \"-s, --source <repo>\",\n      \"Canonical repository in owner/repo format (e.g., acme/standards)\",\n    )\n    .option(\"--local [path]\", \"Use local canonical repository (auto-discover or specify path)\")\n    .option(\"-y, --yes\", \"Non-interactive mode (merge by default)\")\n    .option(\"--override\", \"Override existing AGENTS.md instead of merging\")\n    .option(\"--ref <ref>\", \"GitHub ref/version to sync from (default: latest release)\")\n    .option(\"-t, --target <targets...>\", \"Target platforms (claude, codex)\", [\"claude\"])\n    .action(\n      async (options: {\n        source?: string;\n        local?: string | boolean;\n        yes?: boolean;\n        override?: boolean;\n        ref?: string;\n        target?: string[];\n      }) => {\n        await initCommand(options);\n      },\n    );\n\n  program\n    .command(\"sync\")\n    .description(\"Sync content from canonical repository (fetches latest by default)\")\n    .option(\n      \"-s, --source <repo>\",\n      \"Canonical repository in owner/repo format (e.g., acme/standards)\",\n    )\n    .option(\"--local [path]\", \"Use local canonical repository (auto-discover or specify path)\")\n    .option(\"-y, --yes\", \"Non-interactive mode (merge by default)\")\n    .option(\"--override\", \"Override existing AGENTS.md instead of merging\")\n    .option(\"--ref <ref>\", \"GitHub ref/version to sync from\")\n    .option(\"--pinned\", \"Use lockfile version without fetching latest\")\n    .option(\"-t, --target <targets...>\", \"Target platforms (claude, codex)\", [\"claude\"])\n    .action(\n      async (options: {\n        source?: string;\n        local?: string | boolean;\n        yes?: boolean;\n        override?: boolean;\n        ref?: string;\n        pinned?: boolean;\n        target?: string[];\n      }) => {\n        await syncCommand(options);\n      },\n    );\n\n  program\n    .command(\"status\")\n    .description(\"Show current sync status\")\n    .option(\"-c, --check\", \"Check for manually modified skill files\")\n    .action(async (options: { check?: boolean }) => {\n      await statusCommand(options);\n    });\n\n  program\n    .command(\"check\")\n    .description(\"Check if managed files have been modified\")\n    .option(\"-q, --quiet\", \"Minimal output, just exit code\")\n    .action(async (options: { quiet?: boolean }) => {\n      await checkCommand(options);\n    });\n\n  program\n    .command(\"upgrade-cli\")\n    .description(\"Upgrade the agent-conf CLI to the latest version\")\n    .option(\"-y, --yes\", \"Non-interactive mode\")\n    .action(async (options: { yes?: boolean }) => {\n      await upgradeCliCommand(options);\n    });\n\n  // Config command with subcommands\n  const configCmd = program.command(\"config\").description(\"Manage global CLI configuration\");\n\n  configCmd\n    .command(\"show\")\n    .description(\"Show all configuration values\")\n    .action(async () => {\n      await configShowCommand();\n    });\n\n  configCmd\n    .command(\"get <key>\")\n    .description(\"Get a configuration value\")\n    .action(async (key: string) => {\n      await configGetCommand(key);\n    });\n\n  configCmd\n    .command(\"set <key> <value>\")\n    .description(\"Set a configuration value\")\n    .action(async (key: string, value: string) => {\n      await configSetCommand(key, value);\n    });\n\n  // Default for config command: show config\n  configCmd.action(async () => {\n    await configShowCommand();\n  });\n\n  // Completion command with subcommands\n  const completionCmd = program\n    .command(\"completion\")\n    .description(\"Manage shell completions (bash, zsh, fish)\");\n\n  completionCmd\n    .command(\"install\")\n    .description(\"Install shell completions for your current shell\")\n    .action(async () => {\n      await installCompletion();\n    });\n\n  completionCmd\n    .command(\"uninstall\")\n    .description(\"Remove shell completions\")\n    .action(async () => {\n      await uninstallCompletion();\n    });\n\n  // Default for completion command: install\n  completionCmd.action(async () => {\n    await installCompletion();\n  });\n\n  program\n    .command(\"init-canonical-repo\")\n    .description(\"Scaffold a new canonical repository structure\")\n    .option(\"-n, --name <name>\", \"Name for the canonical repository\")\n    .option(\"-o, --org <organization>\", \"Organization name\")\n    .option(\"-d, --dir <directory>\", \"Target directory (default: current)\")\n    .option(\"--marker-prefix <prefix>\", \"Marker prefix (default: agent-conf)\")\n    .option(\"--no-examples\", \"Skip example skill creation\")\n    .option(\"-y, --yes\", \"Non-interactive mode\")\n    .action(\n      async (options: {\n        name?: string;\n        org?: string;\n        dir?: string;\n        markerPrefix?: string;\n        examples?: boolean;\n        yes?: boolean;\n      }) => {\n        await initCanonicalRepoCommand({\n          name: options.name,\n          org: options.org,\n          dir: options.dir,\n          markerPrefix: options.markerPrefix,\n          includeExamples: options.examples,\n          yes: options.yes,\n        });\n      },\n    );\n\n  // Default command: show help\n  program.action(() => {\n    program.help();\n  });\n\n  return program;\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport pc from \"picocolors\";\nimport { readLockfile } from \"../core/lockfile.js\";\nimport {\n  computeGlobalBlockHash,\n  parseAgentsMd,\n  parseGlobalBlockMetadata,\n  stripMetadataComments,\n} from \"../core/markers.js\";\nimport {\n  checkAllManagedFiles,\n  computeContentHash,\n  parseFrontmatter,\n} from \"../core/skill-metadata.js\";\n\nexport interface CheckOptions {\n  quiet?: boolean;\n}\n\nexport interface CheckResult {\n  synced: boolean;\n  modifiedFiles: ModifiedFileInfo[];\n}\n\nexport interface ModifiedFileInfo {\n  path: string;\n  type: \"skill\" | \"agents\";\n  expectedHash: string;\n  currentHash: string;\n}\n\n/**\n * Check if managed files have been modified.\n * Exits with code 0 if all files are unchanged, code 1 if changes detected.\n */\nexport async function checkCommand(options: CheckOptions = {}): Promise<void> {\n  const targetDir = process.cwd();\n\n  // Check if synced (lockfile exists)\n  const lockfile = await readLockfile(targetDir);\n\n  if (!lockfile) {\n    if (!options.quiet) {\n      console.log();\n      console.log(pc.yellow(\"Not synced\"));\n      console.log();\n      console.log(pc.dim(\"This repository has not been synced with agent-conf.\"));\n      console.log(pc.dim(\"Run `agent-conf init` to sync engineering standards.\"));\n      console.log();\n    }\n    // Exit 0 - not synced is not an error for the check command\n    return;\n  }\n\n  const targets = lockfile.content.targets ?? [\"claude\"];\n  const modifiedFiles: ModifiedFileInfo[] = [];\n\n  // Check all managed files\n  const allFiles = await checkAllManagedFiles(targetDir, targets);\n\n  // Gather detailed info for modified files\n  for (const file of allFiles) {\n    if (!file.hasChanges) continue;\n\n    if (file.type === \"agents\") {\n      // Get hash info for AGENTS.md\n      const agentsMdPath = path.join(targetDir, \"AGENTS.md\");\n      const content = await fs.readFile(agentsMdPath, \"utf-8\");\n      const parsed = parseAgentsMd(content);\n\n      if (parsed.globalBlock) {\n        const metadata = parseGlobalBlockMetadata(parsed.globalBlock);\n        const contentWithoutMeta = stripMetadataComments(parsed.globalBlock);\n        const currentHash = computeGlobalBlockHash(contentWithoutMeta);\n\n        modifiedFiles.push({\n          path: \"AGENTS.md\",\n          type: \"agents\",\n          expectedHash: metadata.contentHash ?? \"unknown\",\n          currentHash,\n        });\n      }\n    } else if (file.type === \"skill\") {\n      // Get hash info for skill file\n      const skillPath = path.join(targetDir, file.path);\n      const content = await fs.readFile(skillPath, \"utf-8\");\n      const { frontmatter } = parseFrontmatter(content);\n\n      const metadata = frontmatter.metadata as Record<string, string> | undefined;\n      const storedHash = metadata?.agent_conf_content_hash ?? \"unknown\";\n      const currentHash = computeContentHash(content);\n\n      modifiedFiles.push({\n        path: file.path,\n        type: \"skill\",\n        expectedHash: storedHash,\n        currentHash,\n      });\n    }\n  }\n\n  // Output results\n  if (options.quiet) {\n    // Quiet mode: just exit with appropriate code\n    if (modifiedFiles.length > 0) {\n      process.exit(1);\n    }\n    return;\n  }\n\n  console.log();\n  console.log(pc.bold(\"agent-conf check\"));\n  console.log();\n  console.log(\"Checking managed files...\");\n  console.log();\n\n  if (modifiedFiles.length === 0) {\n    console.log(`${pc.green(\"✓\")} All managed files are unchanged`);\n    console.log();\n    return;\n  }\n\n  // Modified files found\n  console.log(`${pc.red(\"✗\")} ${modifiedFiles.length} managed file(s) have been modified:`);\n  console.log();\n\n  for (const file of modifiedFiles) {\n    const label = file.type === \"agents\" ? \" (global block)\" : \"\";\n    console.log(`  ${file.path}${pc.dim(label)}`);\n    console.log(`    Expected hash: ${pc.dim(file.expectedHash)}`);\n    console.log(`    Current hash:  ${pc.dim(file.currentHash)}`);\n    console.log();\n  }\n\n  console.log(pc.dim(\"These files are managed by agent-conf and should not be modified manually.\"));\n  console.log(pc.dim(\"Run 'agent-conf sync' to restore them to the expected state.\"));\n  console.log();\n\n  process.exit(1);\n}\n","import { createHash } from \"node:crypto\";\nimport * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport { type Lockfile, LockfileSchema, type Source } from \"../schemas/lockfile.js\";\n\n// Injected at build time by tsup\ndeclare const __BUILD_COMMIT__: string;\n\nconst CONFIG_DIR = \".agent-conf\";\nconst LOCKFILE_NAME = \"lockfile.json\";\nconst CLI_VERSION = \"0.1.0\";\n\n/**\n * Gets the git commit SHA the CLI was built from.\n */\nexport function getBuildCommit(): string {\n  return typeof __BUILD_COMMIT__ !== \"undefined\" ? __BUILD_COMMIT__ : \"unknown\";\n}\n\nexport function getLockfilePath(targetDir: string): string {\n  return path.join(targetDir, CONFIG_DIR, LOCKFILE_NAME);\n}\n\nexport async function readLockfile(targetDir: string): Promise<Lockfile | null> {\n  const lockfilePath = getLockfilePath(targetDir);\n\n  try {\n    const content = await fs.readFile(lockfilePath, \"utf-8\");\n    const parsed: unknown = JSON.parse(content);\n    return LockfileSchema.parse(parsed);\n  } catch (error) {\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\n      return null;\n    }\n    throw error;\n  }\n}\n\nexport interface WriteLockfileOptions {\n  source: Source;\n  globalBlockContent: string;\n  skills: string[];\n  targets?: string[];\n  pinnedVersion?: string;\n}\n\nexport async function writeLockfile(\n  targetDir: string,\n  options: WriteLockfileOptions,\n): Promise<Lockfile> {\n  const lockfilePath = getLockfilePath(targetDir);\n\n  const lockfile: Lockfile = {\n    version: \"1\",\n    pinned_version: options.pinnedVersion,\n    synced_at: new Date().toISOString(),\n    source: options.source,\n    content: {\n      agents_md: {\n        global_block_hash: hashContent(options.globalBlockContent),\n        merged: true,\n      },\n      skills: options.skills,\n      targets: options.targets ?? [\"claude\"],\n    },\n    cli_version: CLI_VERSION,\n  };\n\n  await fs.mkdir(path.dirname(lockfilePath), { recursive: true });\n  await fs.writeFile(lockfilePath, `${JSON.stringify(lockfile, null, 2)}\\n`, \"utf-8\");\n\n  return lockfile;\n}\n\nexport function hashContent(content: string): string {\n  const hash = createHash(\"sha256\").update(content).digest(\"hex\");\n  return `sha256:${hash.slice(0, 12)}`;\n}\n\nexport function getCliVersion(): string {\n  return CLI_VERSION;\n}\n\nexport interface VersionMismatch {\n  cliCommit: string;\n  lockfileCommit: string;\n}\n\n/**\n * Checks if the CLI's build commit matches the lockfile's source commit.\n * Returns mismatch info if they differ (CLI is outdated), null otherwise.\n */\nexport async function checkCliVersionMismatch(targetDir: string): Promise<VersionMismatch | null> {\n  const lockfile = await readLockfile(targetDir);\n\n  // No lockfile means first sync - no mismatch\n  if (!lockfile) {\n    return null;\n  }\n\n  // Only check for GitHub sources (local doesn't have a meaningful commit to compare)\n  if (lockfile.source.type !== \"github\") {\n    return null;\n  }\n\n  const cliCommit = getBuildCommit();\n  const lockfileCommit = lockfile.source.commit_sha;\n\n  // If CLI commit is unknown, we can't compare\n  if (cliCommit === \"unknown\") {\n    return null;\n  }\n\n  // Check if commits match (compare first 7 chars for short SHA compatibility)\n  const cliShort = cliCommit.slice(0, 7);\n  const lockfileShort = lockfileCommit.slice(0, 7);\n\n  if (cliShort !== lockfileShort) {\n    return {\n      cliCommit: cliShort,\n      lockfileCommit: lockfileShort,\n    };\n  }\n\n  return null;\n}\n","import { z } from \"zod\";\n\nexport const SourceSchema = z.discriminatedUnion(\"type\", [\n  z.object({\n    type: z.literal(\"github\"),\n    repository: z.string(),\n    commit_sha: z.string(),\n    ref: z.string(),\n  }),\n  z.object({\n    type: z.literal(\"local\"),\n    path: z.string(),\n    commit_sha: z.string().optional(),\n  }),\n]);\n\nexport const ContentSchema = z.object({\n  agents_md: z.object({\n    global_block_hash: z.string(),\n    merged: z.boolean(),\n  }),\n  skills: z.array(z.string()),\n  targets: z.array(z.string()).optional(),\n});\n\nexport const LockfileSchema = z.object({\n  version: z.literal(\"1\"),\n  pinned_version: z.string().optional(), // Pinned release version (e.g., \"1.2.0\")\n  synced_at: z.string().datetime(),\n  source: SourceSchema,\n  content: ContentSchema,\n  cli_version: z.string(),\n});\n\nexport type Source = z.infer<typeof SourceSchema>;\nexport type Content = z.infer<typeof ContentSchema>;\nexport type Lockfile = z.infer<typeof LockfileSchema>;\n","import fs from \"node:fs\";\nimport os from \"node:os\";\nimport path from \"node:path\";\nimport * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport tabtab from \"tabtab\";\n// @ts-expect-error - tabtab internal module not typed\nimport tabtabInstaller from \"tabtab/lib/installer.js\";\n\nconst CLI_NAME = \"agent-conf\";\n\n// Commands and their options for completion\nconst COMMANDS = {\n  init: {\n    description: \"Initialize or sync agent-conf standards\",\n    options: [\"-s\", \"--source\", \"--local\", \"-y\", \"--yes\", \"--override\", \"--ref\", \"-t\", \"--target\"],\n  },\n  sync: {\n    description: \"Sync agent-conf standards\",\n    options: [\"-s\", \"--source\", \"--local\", \"-y\", \"--yes\", \"--override\", \"--ref\", \"-t\", \"--target\"],\n  },\n  status: {\n    description: \"Show current sync status\",\n    options: [\"-c\", \"--check\"],\n  },\n  update: {\n    description: \"Check for and apply updates\",\n    options: [\"-y\", \"--yes\", \"-t\", \"--target\"],\n  },\n  check: {\n    description: \"Check if managed files have been modified\",\n    options: [\"-q\", \"--quiet\"],\n  },\n  config: {\n    description: \"Manage global CLI configuration\",\n    options: [],\n  },\n  \"upgrade-cli\": {\n    description: \"Upgrade the CLI to latest version\",\n    options: [\"-y\", \"--yes\"],\n  },\n  \"init-canonical-repo\": {\n    description: \"Scaffold a new canonical repository\",\n    options: [\n      \"-n\",\n      \"--name\",\n      \"-o\",\n      \"--org\",\n      \"-d\",\n      \"--dir\",\n      \"--marker-prefix\",\n      \"--no-examples\",\n      \"-y\",\n      \"--yes\",\n    ],\n  },\n  completion: {\n    description: \"Manage shell completions\",\n    options: [],\n  },\n};\n\nconst CONFIG_SUBCOMMANDS = [\"show\", \"get\", \"set\"];\nconst COMPLETION_SUBCOMMANDS = [\"install\", \"uninstall\"];\nconst TARGET_VALUES = [\"claude\", \"codex\"];\n\n/**\n * Handle shell completion requests.\n * This should be called early in the CLI lifecycle.\n * Returns true if this was a completion request (and it was handled).\n */\nexport function handleCompletion(): boolean {\n  const env = tabtab.parseEnv(process.env);\n\n  if (!env.complete) {\n    return false;\n  }\n\n  // Determine what to complete based on context\n  const { prev, words } = env;\n\n  // Complete command names\n  if (prev === CLI_NAME || words === 1) {\n    tabtab.log(\n      Object.entries(COMMANDS).map(([name, info]) => ({\n        name,\n        description: info.description,\n      })),\n    );\n    return true;\n  }\n\n  // Find which command we're completing for\n  const commandIndex = 1; // words[0] is the CLI name\n  const currentCommand = env.line.split(/\\s+/)[commandIndex];\n\n  // Complete subcommands for 'config'\n  if (currentCommand === \"config\" && words === 2) {\n    tabtab.log(\n      CONFIG_SUBCOMMANDS.map((name) => ({\n        name,\n        description: `${name} configuration`,\n      })),\n    );\n    return true;\n  }\n\n  // Complete subcommands for 'completion'\n  if (currentCommand === \"completion\" && words === 2) {\n    tabtab.log(\n      COMPLETION_SUBCOMMANDS.map((name) => ({\n        name,\n        description: `${name} shell completions`,\n      })),\n    );\n    return true;\n  }\n\n  // Complete --target values\n  if (prev === \"--target\" || prev === \"-t\") {\n    tabtab.log(TARGET_VALUES);\n    return true;\n  }\n\n  // Complete options for the current command\n  if (currentCommand && currentCommand in COMMANDS) {\n    const command = COMMANDS[currentCommand as keyof typeof COMMANDS];\n    tabtab.log(command.options);\n    return true;\n  }\n\n  // Default: complete command names\n  tabtab.log(Object.keys(COMMANDS));\n  return true;\n}\n\n/**\n * Get the tabtab completion script path for this CLI.\n * tabtab stores completions in ~/.config/tabtab/<name>.<shell>\n */\nfunction getTabtabCompletionFile(shell: string): string {\n  const home = os.homedir();\n  const ext = shell === \"fish\" ? \"fish\" : shell === \"zsh\" ? \"zsh\" : \"bash\";\n  return path.join(home, \".config\", \"tabtab\", `${CLI_NAME}.${ext}`);\n}\n\n/**\n * Check if shell completions are already installed for the current shell.\n */\nexport function isCompletionInstalled(): boolean {\n  const shell = detectShell();\n  if (!shell) return false;\n\n  // Check if the tabtab completion file exists for this CLI\n  const completionFile = getTabtabCompletionFile(shell);\n  if (fs.existsSync(completionFile)) {\n    return true;\n  }\n\n  // Fallback: check if the shell config mentions this CLI's completions\n  const configFile = getShellConfigFile(shell);\n  if (!configFile || !fs.existsSync(configFile)) return false;\n\n  try {\n    const content = fs.readFileSync(configFile, \"utf-8\");\n    return (\n      content.includes(`tabtab source for ${CLI_NAME}`) || content.includes(`begin ${CLI_NAME}`)\n    );\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Detect shell from $SHELL environment variable.\n * Uses the same detection method as tabtab for consistency.\n * Exported for testing.\n */\nexport function detectShell(): string | null {\n  const shell = process.env.SHELL || \"\";\n  if (shell.includes(\"fish\")) return \"fish\";\n  if (shell.includes(\"zsh\")) return \"zsh\";\n  if (shell.includes(\"bash\")) return \"bash\";\n  return null;\n}\n\n/** Get the config file path for a given shell. Exported for testing. */\nexport function getShellConfigFile(shell: string): string | null {\n  const home = os.homedir();\n  switch (shell) {\n    case \"zsh\":\n      return path.join(home, \".zshrc\");\n    case \"bash\": {\n      // Check for .bash_profile first (macOS), then .bashrc\n      const bashProfile = path.join(home, \".bash_profile\");\n      if (fs.existsSync(bashProfile)) return bashProfile;\n      return path.join(home, \".bashrc\");\n    }\n    case \"fish\":\n      return path.join(home, \".config\", \"fish\", \"config.fish\");\n    default:\n      return null;\n  }\n}\n\n/**\n * Install shell completions directly without prompting for shell.\n * Uses the detected shell from $SHELL environment variable.\n */\nasync function installCompletionForShell(shell: string): Promise<void> {\n  const location = getShellConfigFile(shell);\n  if (!location) {\n    throw new Error(`Unsupported shell: ${shell}`);\n  }\n\n  await tabtabInstaller.install({\n    name: CLI_NAME,\n    completer: CLI_NAME,\n    location,\n  });\n}\n\n/**\n * Install shell completions.\n */\nexport async function installCompletion(): Promise<void> {\n  console.log();\n  prompts.intro(pc.bold(\"Installing shell completions\"));\n\n  const shell = detectShell();\n  if (!shell) {\n    prompts.log.warn(\"Could not detect shell. Supported shells: bash, zsh, fish\");\n    prompts.outro(\"Completions not installed\");\n    return;\n  }\n\n  prompts.log.info(`Detected shell: ${pc.cyan(shell)}`);\n\n  if (isCompletionInstalled()) {\n    prompts.log.success(\"Shell completions are already installed\");\n    prompts.outro(\"Nothing to do\");\n    return;\n  }\n\n  try {\n    await installCompletionForShell(shell);\n\n    prompts.log.success(`Completions installed for ${pc.cyan(shell)}`);\n    prompts.log.info(\n      `Restart your shell or run: ${pc.cyan(`source ${getShellConfigFile(shell)}`)}`,\n    );\n    prompts.outro(\"Done!\");\n  } catch (error) {\n    prompts.log.error(`Failed to install completions: ${error}`);\n    prompts.outro(\"Installation failed\");\n    process.exit(1);\n  }\n}\n\n/**\n * Uninstall shell completions.\n */\nexport async function uninstallCompletion(): Promise<void> {\n  console.log();\n  prompts.intro(pc.bold(\"Uninstalling shell completions\"));\n\n  try {\n    await tabtab.uninstall({\n      name: CLI_NAME,\n    });\n\n    prompts.log.success(\"Shell completions uninstalled\");\n    prompts.outro(\"Done!\");\n  } catch (error) {\n    prompts.log.error(`Failed to uninstall completions: ${error}`);\n    prompts.outro(\"Uninstallation failed\");\n    process.exit(1);\n  }\n}\n\n/**\n * Prompt user to install completions if not already installed.\n * Used during 'init' command.\n * Returns true if completions were installed.\n */\nexport async function promptCompletionInstall(): Promise<boolean> {\n  if (isCompletionInstalled()) {\n    return false;\n  }\n\n  const shell = detectShell();\n  if (!shell) {\n    // Don't prompt if we can't detect the shell\n    return false;\n  }\n\n  const shouldInstall = await prompts.confirm({\n    message: `Install shell completions for ${shell}?`,\n  });\n\n  if (prompts.isCancel(shouldInstall) || !shouldInstall) {\n    prompts.log.info(`You can install later with: ${pc.cyan(\"agent-conf completion install\")}`);\n    return false;\n  }\n\n  try {\n    await installCompletionForShell(shell);\n\n    prompts.log.success(`Completions installed for ${pc.cyan(shell)}`);\n    prompts.log.info(\n      `Restart your shell or run: ${pc.cyan(`source ${getShellConfigFile(shell)}`)}`,\n    );\n    return true;\n  } catch (error) {\n    prompts.log.warn(`Could not install completions: ${error}`);\n    prompts.log.info(`You can try again with: ${pc.cyan(\"agent-conf completion install\")}`);\n    return false;\n  }\n}\n","import * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { createLogger } from \"../utils/logger.js\";\n\nexport type ConfigOptions = Record<string, never>;\n\nexport async function configShowCommand(): Promise<void> {\n  console.log();\n  prompts.intro(pc.bold(\"agent-conf config\"));\n\n  console.log();\n  console.log(pc.bold(\"Global Configuration:\"));\n  console.log();\n  console.log(pc.dim(\"  No configuration options available.\"));\n  console.log();\n  console.log(pc.dim(\"Config location: ~/.agent-conf/config.json\"));\n\n  prompts.outro(\"\");\n}\n\nexport async function configGetCommand(key: string): Promise<void> {\n  const logger = createLogger();\n  logger.error(`Unknown config key: ${key}`);\n  logger.info(\"No configuration options available.\");\n  process.exit(1);\n}\n\nexport async function configSetCommand(key: string, _value: string): Promise<void> {\n  const logger = createLogger();\n  logger.error(`Unknown config key: ${key}`);\n  logger.info(\"No configuration options available.\");\n  process.exit(1);\n}\n","import ora, { type Ora } from \"ora\";\nimport pc from \"picocolors\";\n\nexport interface Logger {\n  info(message: string): void;\n  success(message: string): void;\n  warn(message: string): void;\n  error(message: string): void;\n  dim(message: string): void;\n  spinner(text: string): Ora;\n}\n\nexport function createLogger(quiet = false): Logger {\n  return {\n    info(message: string) {\n      if (!quiet) {\n        console.log(`${pc.blue(\"info\")} ${message}`);\n      }\n    },\n\n    success(message: string) {\n      if (!quiet) {\n        console.log(`${pc.green(\"success\")} ${message}`);\n      }\n    },\n\n    warn(message: string) {\n      console.log(`${pc.yellow(\"warn\")} ${message}`);\n    },\n\n    error(message: string) {\n      console.error(`${pc.red(\"error\")} ${message}`);\n    },\n\n    dim(message: string) {\n      if (!quiet) {\n        console.log(pc.dim(message));\n      }\n    },\n\n    spinner(text: string): Ora {\n      if (quiet) {\n        return ora({ text, isSilent: true });\n      }\n      return ora({ text, color: \"blue\" });\n    },\n  };\n}\n\nexport function formatPath(p: string, cwd: string = process.cwd()): string {\n  if (p.startsWith(cwd)) {\n    return `.${p.slice(cwd.length)}`;\n  }\n  return p;\n}\n\nexport function formatDuration(ms: number): string {\n  if (ms < 1000) {\n    return `${ms}ms`;\n  }\n  return `${(ms / 1000).toFixed(1)}s`;\n}\n","import * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { getSyncStatus } from \"../core/sync.js\";\nimport { promptCompletionInstall } from \"./completion.js\";\nimport {\n  checkModifiedFilesBeforeSync,\n  parseAndValidateTargets,\n  performSync,\n  promptMergeOrOverride,\n  resolveSource,\n  resolveTargetDirectory,\n  resolveVersion,\n  type SharedSyncOptions,\n} from \"./shared.js\";\n\nexport interface InitOptions extends SharedSyncOptions {}\n\nexport async function initCommand(options: InitOptions): Promise<void> {\n  console.log();\n  prompts.intro(pc.bold(\"agent-conf init\"));\n\n  // Resolve target directory to git root\n  const targetDir = await resolveTargetDirectory();\n\n  // Parse targets\n  const targets = await parseAndValidateTargets(options.target);\n\n  // Check current status\n  const status = await getSyncStatus(targetDir);\n\n  // Prompt if already synced (init-specific behavior)\n  if (status.hasSynced && !options.yes) {\n    const shouldContinue = await prompts.confirm({\n      message: \"This repository has already been synced. Do you want to sync again?\",\n    });\n\n    if (prompts.isCancel(shouldContinue) || !shouldContinue) {\n      prompts.cancel(\"Operation cancelled\");\n      process.exit(0);\n    }\n  }\n\n  // Resolve version (fetches latest release if no --ref specified)\n  // For GitHub sources, pass the repo to fetch releases from\n  const resolvedVersion = await resolveVersion(options, status, \"init\", options.source);\n\n  // Resolve source using the determined version\n  const { resolvedSource, tempDir, repository } = await resolveSource(options, resolvedVersion);\n\n  // Determine merge behavior\n  const shouldOverride = await promptMergeOrOverride(status, options, tempDir);\n\n  // Check for modified skill files and warn\n  await checkModifiedFilesBeforeSync(targetDir, targets, options, tempDir);\n\n  // Perform sync (includes workflow files for release versions)\n  await performSync({\n    targetDir,\n    resolvedSource,\n    resolvedVersion,\n    shouldOverride,\n    targets,\n    context: {\n      commandName: \"init\",\n      status,\n    },\n    tempDir,\n    yes: options.yes,\n    sourceRepo: repository,\n  });\n\n  // Prompt to install shell completions (only if not in non-interactive mode)\n  if (!options.yes) {\n    await promptCompletionInstall();\n  }\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport fg from \"fast-glob\";\nimport type { Lockfile } from \"../schemas/lockfile.js\";\nimport { readLockfile, writeLockfile } from \"./lockfile.js\";\nimport { ensureClaudeMd, mergeAgentsMd, writeAgentsMd } from \"./merge.js\";\nimport {\n  addManagedMetadata,\n  type SkillValidationError,\n  validateSkillFrontmatter,\n} from \"./skill-metadata.js\";\nimport type { ResolvedSource } from \"./source.js\";\nimport { getTargetConfig, type Target, type TargetConfig } from \"./targets.js\";\n\nexport interface SyncOptions {\n  override: boolean;\n  targets: Target[];\n  /** Pinned version to record in lockfile */\n  pinnedVersion?: string;\n}\n\nexport interface TargetResult {\n  target: Target;\n  instructionsMd: {\n    created: boolean;\n    updated: boolean;\n    location: \"root\" | \"dotdir\" | null;\n    contentMerged: boolean;\n  };\n  skills: {\n    copied: number;\n  };\n}\n\nexport interface SyncResult {\n  lockfile: Lockfile;\n  agentsMd: {\n    merged: boolean;\n    preservedRepoContent: boolean;\n  };\n  targets: TargetResult[];\n  skills: {\n    synced: string[];\n    totalCopied: number;\n    validationErrors: SkillValidationError[];\n  };\n}\n\nexport async function sync(\n  targetDir: string,\n  resolvedSource: ResolvedSource,\n  options: SyncOptions = { override: false, targets: [\"claude\"] },\n): Promise<SyncResult> {\n  // Read global AGENTS.md content\n  const globalContent = await fs.readFile(resolvedSource.agentsMdPath, \"utf-8\");\n\n  // Merge/write AGENTS.md (also gathers existing CLAUDE.md content)\n  const mergeResult = await mergeAgentsMd(targetDir, globalContent, resolvedSource.source, {\n    override: options.override,\n  });\n  await writeAgentsMd(targetDir, mergeResult.content);\n\n  // Find all skill directories once\n  const skillDirs = await fg(\"*/\", {\n    cwd: resolvedSource.skillsPath,\n    onlyDirectories: true,\n    deep: 1,\n  });\n  const skillNames = skillDirs.map((d) => d.replace(/\\/$/, \"\"));\n\n  // Validate all skills have required frontmatter\n  const validationErrors: SkillValidationError[] = [];\n  for (const skillName of skillNames) {\n    const skillMdPath = path.join(resolvedSource.skillsPath, skillName, \"SKILL.md\");\n    try {\n      const content = await fs.readFile(skillMdPath, \"utf-8\");\n      const error = validateSkillFrontmatter(content, skillName, skillMdPath);\n      if (error) {\n        validationErrors.push(error);\n      }\n    } catch {\n      // Skip if SKILL.md doesn't exist (will be handled elsewhere)\n    }\n  }\n\n  // Process each target\n  const targetResults: TargetResult[] = [];\n  let totalCopied = 0;\n\n  for (const target of options.targets) {\n    const config = getTargetConfig(target);\n\n    // Sync skills to this target\n    const skillsCopied = await syncSkillsToTarget(\n      targetDir,\n      resolvedSource.skillsPath,\n      skillNames,\n      config,\n    );\n    totalCopied += skillsCopied;\n\n    // Only Claude needs an instructions file with @AGENTS.md reference\n    // Other targets (codex, etc.) read AGENTS.md directly\n    let instructionsResult: TargetResult[\"instructionsMd\"];\n    if (config.instructionsFile) {\n      instructionsResult = await ensureInstructionsMd(\n        targetDir,\n        config,\n        target === \"claude\" ? mergeResult.claudeMdLocation : null,\n      );\n    } else {\n      instructionsResult = {\n        created: false,\n        updated: false,\n        location: null,\n        contentMerged: false,\n      };\n    }\n\n    targetResults.push({\n      target,\n      instructionsMd: instructionsResult,\n      skills: { copied: skillsCopied },\n    });\n  }\n\n  // Write lockfile\n  const lockfileOptions: Parameters<typeof writeLockfile>[1] = {\n    source: resolvedSource.source,\n    globalBlockContent: globalContent,\n    skills: skillNames,\n    targets: options.targets,\n  };\n  if (options.pinnedVersion) {\n    lockfileOptions.pinnedVersion = options.pinnedVersion;\n  }\n  const lockfile = await writeLockfile(targetDir, lockfileOptions);\n\n  return {\n    lockfile,\n    agentsMd: {\n      merged: mergeResult.merged,\n      preservedRepoContent: mergeResult.preservedRepoContent,\n    },\n    targets: targetResults,\n    skills: {\n      synced: skillNames,\n      totalCopied,\n      validationErrors,\n    },\n  };\n}\n\nasync function syncSkillsToTarget(\n  targetDir: string,\n  sourceSkillsPath: string,\n  skillNames: string[],\n  config: TargetConfig,\n): Promise<number> {\n  const targetSkillsPath = path.join(targetDir, config.dir, \"skills\");\n  let copied = 0;\n\n  for (const skillName of skillNames) {\n    const sourceDir = path.join(sourceSkillsPath, skillName);\n    const targetSkillDir = path.join(targetSkillsPath, skillName);\n\n    const filesCopied = await copySkillDirectory(sourceDir, targetSkillDir);\n    copied += filesCopied;\n  }\n\n  return copied;\n}\n\n/**\n * Copy a skill directory, adding managed metadata to SKILL.md files.\n */\nasync function copySkillDirectory(sourceDir: string, targetDir: string): Promise<number> {\n  await fs.mkdir(targetDir, { recursive: true });\n\n  const entries = await fs.readdir(sourceDir, { withFileTypes: true });\n  let copied = 0;\n\n  for (const entry of entries) {\n    const sourcePath = path.join(sourceDir, entry.name);\n    const targetPath = path.join(targetDir, entry.name);\n\n    if (entry.isDirectory()) {\n      copied += await copySkillDirectory(sourcePath, targetPath);\n    } else if (entry.name === \"SKILL.md\") {\n      // Add managed metadata to SKILL.md files\n      const content = await fs.readFile(sourcePath, \"utf-8\");\n      const contentWithMetadata = addManagedMetadata(content);\n      await fs.writeFile(targetPath, contentWithMetadata, \"utf-8\");\n      copied++;\n    } else {\n      // Copy other files as-is\n      await fs.copyFile(sourcePath, targetPath);\n      copied++;\n    }\n  }\n\n  return copied;\n}\n\nasync function ensureInstructionsMd(\n  targetDir: string,\n  config: TargetConfig,\n  existingLocation: \"root\" | \"dotclaude\" | null,\n): Promise<{\n  created: boolean;\n  updated: boolean;\n  location: \"root\" | \"dotdir\" | null;\n  contentMerged: boolean;\n}> {\n  // Only Claude needs an instructions file\n  if (!config.instructionsFile) {\n    return { created: false, updated: false, location: null, contentMerged: false };\n  }\n\n  // Use the existing ensureClaudeMd logic for Claude\n  const result = await ensureClaudeMd(targetDir, existingLocation);\n  return {\n    created: result.created,\n    updated: result.updated,\n    location: result.location === \"dotclaude\" ? \"dotdir\" : result.location,\n    contentMerged: result.contentMerged,\n  };\n}\n\nexport interface SyncStatus {\n  hasSynced: boolean;\n  lockfile: Lockfile | null;\n  agentsMdExists: boolean;\n  skillsExist: boolean;\n}\n\nexport async function getSyncStatus(targetDir: string): Promise<SyncStatus> {\n  const lockfile = await readLockfile(targetDir);\n  const agentsMdPath = path.join(targetDir, \"AGENTS.md\");\n  const skillsPath = path.join(targetDir, \".claude\", \"skills\");\n\n  const [agentsMdExists, skillsExist] = await Promise.all([\n    fs\n      .access(agentsMdPath)\n      .then(() => true)\n      .catch(() => false),\n    fs\n      .access(skillsPath)\n      .then(() => true)\n      .catch(() => false),\n  ]);\n\n  return {\n    hasSynced: lockfile !== null,\n    lockfile,\n    agentsMdExists,\n    skillsExist,\n  };\n}\n\n/**\n * Find skills that were previously synced but are no longer in the current sync.\n */\nexport function findOrphanedSkills(previousSkills: string[], currentSkills: string[]): string[] {\n  return previousSkills.filter((skill) => !currentSkills.includes(skill));\n}\n\n/**\n * Delete orphaned skill directories from all targets.\n * Only deletes skills that:\n * 1. Are managed (have managed metadata in SKILL.md)\n * 2. AND either:\n *    - Content hash matches (skill hasn't been modified), OR\n *    - Skill was in the previous lockfile (confirming it was synced)\n *\n * This prevents accidentally deleting skills that were manually copied.\n */\nexport async function deleteOrphanedSkills(\n  targetDir: string,\n  orphanedSkills: string[],\n  targets: string[],\n  previouslyTrackedSkills: string[],\n): Promise<{ deleted: string[]; skipped: string[] }> {\n  const deleted: string[] = [];\n  const skipped: string[] = [];\n\n  for (const skillName of orphanedSkills) {\n    let wasDeleted = false;\n\n    for (const target of targets) {\n      const skillDir = path.join(targetDir, `.${target}`, \"skills\", skillName);\n\n      // Check if skill directory exists\n      try {\n        await fs.access(skillDir);\n      } catch {\n        continue; // Directory doesn't exist for this target\n      }\n\n      // Check if the skill is managed before deleting\n      const skillMdPath = path.join(skillDir, \"SKILL.md\");\n      try {\n        const content = await fs.readFile(skillMdPath, \"utf-8\");\n        const { isManaged, hasManualChanges } = await import(\"./skill-metadata.js\");\n\n        if (!isManaged(content)) {\n          // Not managed, skip deletion\n          if (!skipped.includes(skillName)) {\n            skipped.push(skillName);\n          }\n          continue;\n        }\n\n        // Additional safety check: only delete if either:\n        // 1. The skill was in the previous lockfile (confirming it was synced), OR\n        // 2. The content hash matches (skill hasn't been modified)\n        const wasInPreviousLockfile = previouslyTrackedSkills.includes(skillName);\n        const isUnmodified = !hasManualChanges(content);\n\n        if (!wasInPreviousLockfile && !isUnmodified) {\n          // Skill is managed but wasn't in lockfile and has been modified\n          // This could be a manually copied skill - skip to be safe\n          if (!skipped.includes(skillName)) {\n            skipped.push(skillName);\n          }\n          continue;\n        }\n      } catch {\n        // SKILL.md doesn't exist, skip deletion to be safe\n        if (!skipped.includes(skillName)) {\n          skipped.push(skillName);\n        }\n        continue;\n      }\n\n      // Delete the skill directory\n      await fs.rm(skillDir, { recursive: true, force: true });\n      wasDeleted = true;\n    }\n\n    if (wasDeleted && !deleted.includes(skillName)) {\n      deleted.push(skillName);\n    }\n  }\n\n  return { deleted, skipped };\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport type { Source } from \"../schemas/lockfile.js\";\nimport { buildAgentsMd, extractRepoBlockContent, parseAgentsMd } from \"./markers.js\";\n\nexport interface MergeOptions {\n  override: boolean;\n}\n\nexport interface MergeResult {\n  content: string;\n  merged: boolean;\n  preservedRepoContent: boolean;\n}\n\nexport interface ClaudeMdResult {\n  created: boolean;\n  updated: boolean;\n  location: \"root\" | \"dotclaude\" | null;\n  contentMerged: boolean;\n}\n\ninterface ExistingContent {\n  agentsMd: string | null;\n  claudeMd: string | null;\n  claudeMdLocation: \"root\" | \"dotclaude\" | null;\n}\n\nasync function readFileIfExists(filePath: string): Promise<string | null> {\n  try {\n    return await fs.readFile(filePath, \"utf-8\");\n  } catch (error) {\n    if ((error as NodeJS.ErrnoException).code === \"ENOENT\") {\n      return null;\n    }\n    throw error;\n  }\n}\n\nasync function gatherExistingContent(targetDir: string): Promise<ExistingContent> {\n  const agentsMdPath = path.join(targetDir, \"AGENTS.md\");\n  const rootClaudeMdPath = path.join(targetDir, \"CLAUDE.md\");\n  const dotClaudeClaudeMdPath = path.join(targetDir, \".claude\", \"CLAUDE.md\");\n\n  const agentsMd = await readFileIfExists(agentsMdPath);\n\n  // Check root CLAUDE.md first, then .claude/CLAUDE.md\n  const rootClaudeMd = await readFileIfExists(rootClaudeMdPath);\n  if (rootClaudeMd !== null) {\n    return { agentsMd, claudeMd: rootClaudeMd, claudeMdLocation: \"root\" };\n  }\n\n  const dotClaudeClaudeMd = await readFileIfExists(dotClaudeClaudeMdPath);\n  if (dotClaudeClaudeMd !== null) {\n    return { agentsMd, claudeMd: dotClaudeClaudeMd, claudeMdLocation: \"dotclaude\" };\n  }\n\n  return { agentsMd, claudeMd: null, claudeMdLocation: null };\n}\n\nfunction stripAgentsReference(content: string): string {\n  // Remove @AGENTS.md, @../AGENTS.md, or @.claude/AGENTS.md references\n  return content\n    .split(\"\\n\")\n    .filter((line) => {\n      const trimmed = line.trim();\n      return !trimmed.match(/^@(\\.\\.\\/|\\.claude\\/)?AGENTS\\.md$/);\n    })\n    .join(\"\\n\")\n    .trim();\n}\n\nexport async function mergeAgentsMd(\n  targetDir: string,\n  globalContent: string,\n  _source: Source,\n  options: MergeOptions = { override: false },\n): Promise<\n  MergeResult & {\n    existingClaudeMdContent: string | null;\n    claudeMdLocation: \"root\" | \"dotclaude\" | null;\n  }\n> {\n  const existing = await gatherExistingContent(targetDir);\n\n  // Collect content to merge into repo block\n  const contentToMerge: string[] = [];\n\n  // Handle existing AGENTS.md\n  if (existing.agentsMd !== null && !options.override) {\n    const parsed = parseAgentsMd(existing.agentsMd);\n    if (parsed.hasMarkers) {\n      // Has markers - preserve repo block content\n      const repoContent = extractRepoBlockContent(parsed);\n      if (repoContent) {\n        contentToMerge.push(repoContent);\n      }\n    } else {\n      // No markers - treat entire content as repo-specific\n      contentToMerge.push(existing.agentsMd.trim());\n    }\n  }\n\n  // Handle existing CLAUDE.md content (merge into repo block)\n  let claudeMdContentForMerge: string | null = null;\n  if (existing.claudeMd !== null && !options.override) {\n    const strippedContent = stripAgentsReference(existing.claudeMd);\n    if (strippedContent) {\n      claudeMdContentForMerge = strippedContent;\n      contentToMerge.push(strippedContent);\n    }\n  }\n\n  // Build final repo content\n  const repoContent = contentToMerge.length > 0 ? contentToMerge.join(\"\\n\\n\") : null;\n  const content = buildAgentsMd(globalContent, repoContent, {});\n\n  const merged = !options.override && (existing.agentsMd !== null || existing.claudeMd !== null);\n  const preservedRepoContent = contentToMerge.length > 0;\n\n  return {\n    content,\n    merged,\n    preservedRepoContent,\n    existingClaudeMdContent: claudeMdContentForMerge,\n    claudeMdLocation: existing.claudeMdLocation,\n  };\n}\n\nexport async function writeAgentsMd(targetDir: string, content: string): Promise<void> {\n  const agentsMdPath = path.join(targetDir, \"AGENTS.md\");\n  await fs.writeFile(agentsMdPath, content, \"utf-8\");\n}\n\nexport async function ensureClaudeMd(\n  targetDir: string,\n  existingLocation: \"root\" | \"dotclaude\" | null,\n): Promise<ClaudeMdResult> {\n  // Determine where CLAUDE.md should be and what reference to use\n  // If there's an existing one, update it in place; otherwise create in .claude/\n  const rootPath = path.join(targetDir, \"CLAUDE.md\");\n  const dotClaudePath = path.join(targetDir, \".claude\", \"CLAUDE.md\");\n\n  // Reference paths (AGENTS.md is in root)\n  const rootReference = \"@AGENTS.md\";\n  const dotClaudeReference = \"@../AGENTS.md\";\n\n  if (existingLocation === \"root\") {\n    // Update root CLAUDE.md\n    const existingContent = await readFileIfExists(rootPath);\n    if (existingContent !== null) {\n      // Check if reference already exists\n      if (existingContent.includes(rootReference)) {\n        return { created: false, updated: false, location: \"root\", contentMerged: false };\n      }\n      // Content was already merged into AGENTS.md, just add the reference\n      await fs.writeFile(rootPath, `${rootReference}\\n`, \"utf-8\");\n      return { created: false, updated: true, location: \"root\", contentMerged: true };\n    }\n  }\n\n  if (existingLocation === \"dotclaude\") {\n    // Update .claude/CLAUDE.md\n    const existingContent = await readFileIfExists(dotClaudePath);\n    if (existingContent !== null) {\n      // Check if reference already exists\n      if (existingContent.includes(dotClaudeReference)) {\n        return { created: false, updated: false, location: \"dotclaude\", contentMerged: false };\n      }\n      // Content was already merged into AGENTS.md, just add the reference\n      await fs.writeFile(dotClaudePath, `${dotClaudeReference}\\n`, \"utf-8\");\n      return { created: false, updated: true, location: \"dotclaude\", contentMerged: true };\n    }\n  }\n\n  // No existing CLAUDE.md - create in .claude/\n  await fs.mkdir(path.dirname(dotClaudePath), { recursive: true });\n  await fs.writeFile(dotClaudePath, `${dotClaudeReference}\\n`, \"utf-8\");\n  return { created: true, updated: false, location: \"dotclaude\", contentMerged: false };\n}\n","export const SUPPORTED_TARGETS = [\"claude\", \"codex\"] as const;\nexport type Target = (typeof SUPPORTED_TARGETS)[number];\n\nexport interface TargetConfig {\n  /** Directory name (e.g., \".claude\", \".codex\") */\n  dir: string;\n  /** Instructions file name if target needs one (only Claude uses this) */\n  instructionsFile: string | null;\n}\n\nexport const TARGET_CONFIGS: Record<Target, TargetConfig> = {\n  claude: {\n    dir: \".claude\",\n    instructionsFile: \"CLAUDE.md\",\n  },\n  codex: {\n    dir: \".codex\",\n    instructionsFile: null, // Codex reads AGENTS.md directly\n  },\n};\n\nexport function isValidTarget(target: string): target is Target {\n  return SUPPORTED_TARGETS.includes(target as Target);\n}\n\nexport function parseTargets(input: string[]): Target[] {\n  const targets: Target[] = [];\n  for (const t of input) {\n    // Support comma-separated values\n    const parts = t.split(\",\").map((p) => p.trim().toLowerCase());\n    for (const part of parts) {\n      if (!isValidTarget(part)) {\n        throw new Error(\n          `Invalid target \"${part}\". Supported targets: ${SUPPORTED_TARGETS.join(\", \")}`,\n        );\n      }\n      if (!targets.includes(part)) {\n        targets.push(part);\n      }\n    }\n  }\n  return targets.length > 0 ? targets : [\"claude\"];\n}\n\nexport function getTargetConfig(target: Target): TargetConfig {\n  return TARGET_CONFIGS[target];\n}\n","import * as path from \"node:path\";\nimport * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { installPreCommitHook } from \"../core/hooks.js\";\nimport { readLockfile } from \"../core/lockfile.js\";\nimport { getModifiedManagedFiles } from \"../core/skill-metadata.js\";\nimport type { ResolvedSource } from \"../core/source.js\";\nimport { formatSourceString, resolveGithubSource, resolveLocalSource } from \"../core/source.js\";\nimport { deleteOrphanedSkills, findOrphanedSkills, type SyncStatus, sync } from \"../core/sync.js\";\nimport { getTargetConfig, parseTargets, SUPPORTED_TARGETS, type Target } from \"../core/targets.js\";\nimport {\n  formatTag,\n  getLatestRelease,\n  isVersionRef,\n  parseVersion,\n  type ReleaseInfo,\n} from \"../core/version.js\";\nimport { syncWorkflows, type WorkflowSyncResult } from \"../core/workflows.js\";\nimport { createTempDir, removeTempDir, resolvePath } from \"../utils/fs.js\";\nimport { getGitRoot } from \"../utils/git.js\";\nimport { createLogger, formatPath } from \"../utils/logger.js\";\n\nexport interface SharedSyncOptions {\n  source?: string;\n  local?: string | boolean;\n  yes?: boolean;\n  override?: boolean;\n  ref?: string;\n  target?: string[];\n  pinned?: boolean;\n}\n\nexport interface CommandContext {\n  commandName: \"init\" | \"sync\";\n  status: SyncStatus;\n}\n\nexport interface ResolvedVersion {\n  ref: string; // The ref used for cloning (e.g., \"v1.2.0\" or \"master\")\n  version: string | undefined; // The semantic version if ref is a release tag (e.g., \"1.2.0\")\n  isRelease: boolean; // Whether this is a release version\n  releaseInfo: ReleaseInfo | null; // Full release info if fetched\n}\n\nexport async function parseAndValidateTargets(\n  targetOptions: string[] | undefined,\n): Promise<Target[]> {\n  const logger = createLogger();\n  try {\n    return parseTargets(targetOptions ?? [\"claude\"]);\n  } catch (error) {\n    logger.error(error instanceof Error ? error.message : String(error));\n    logger.info(`Supported targets: ${SUPPORTED_TARGETS.join(\", \")}`);\n    process.exit(1);\n  }\n}\n\nexport async function resolveTargetDirectory(): Promise<string> {\n  const logger = createLogger();\n  const cwd = process.cwd();\n\n  const gitRoot = await getGitRoot(cwd);\n  if (!gitRoot) {\n    logger.error(\n      \"Not inside a git repository. Please run this command from within a git repository.\",\n    );\n    process.exit(1);\n  }\n\n  // If we're in a subdirectory, inform the user\n  if (gitRoot !== cwd) {\n    logger.info(`Syncing to repository root: ${formatPath(gitRoot)}`);\n  }\n\n  return gitRoot;\n}\n\n/**\n * Resolves the version to use for syncing.\n * - For init: fetches latest release if no ref specified\n * - For sync: uses lockfile version if no ref specified\n * - For explicit --ref: uses that ref\n *\n * @param repo - The repository to fetch releases from (only used for non-local sources)\n */\nexport async function resolveVersion(\n  options: SharedSyncOptions,\n  status: SyncStatus,\n  _commandName: \"init\" | \"sync\",\n  repo?: string,\n): Promise<ResolvedVersion> {\n  const logger = createLogger();\n\n  // If --local is used, no version management\n  if (options.local !== undefined) {\n    return {\n      ref: \"local\",\n      version: undefined,\n      isRelease: false,\n      releaseInfo: null,\n    };\n  }\n\n  // If explicit --ref is provided, use it\n  if (options.ref) {\n    if (isVersionRef(options.ref)) {\n      return {\n        ref: formatTag(options.ref),\n        version: parseVersion(options.ref),\n        isRelease: true,\n        releaseInfo: null,\n      };\n    }\n    // Branch ref\n    return {\n      ref: options.ref,\n      version: undefined,\n      isRelease: false,\n      releaseInfo: null,\n    };\n  }\n\n  // If --pinned is specified, use lockfile version without fetching\n  if (options.pinned) {\n    if (!status.lockfile?.pinned_version) {\n      logger.error(\"Cannot use --pinned: no version pinned in lockfile.\");\n      process.exit(1);\n    }\n    const version = status.lockfile.pinned_version;\n    return {\n      ref: formatTag(version),\n      version,\n      isRelease: true,\n      releaseInfo: null,\n    };\n  }\n\n  // Default for both init and sync: fetch latest release\n  // This requires a repo to be specified\n  if (!repo) {\n    // No repo means we can't fetch releases - use master as fallback\n    logger.warn(\"No source repository specified. Using master branch.\");\n    return {\n      ref: \"master\",\n      version: undefined,\n      isRelease: false,\n      releaseInfo: null,\n    };\n  }\n\n  const spinner = logger.spinner(\"Fetching latest release...\");\n  spinner.start();\n\n  try {\n    const release = await getLatestRelease(repo);\n    spinner.succeed(`Latest release: ${release.tag}`);\n    return {\n      ref: release.tag,\n      version: release.version,\n      isRelease: true,\n      releaseInfo: release,\n    };\n  } catch {\n    spinner.fail(\"Failed to fetch latest release, falling back to master\");\n    logger.warn(\"Could not fetch latest release. Using master branch instead.\");\n    return {\n      ref: \"master\",\n      version: undefined,\n      isRelease: false,\n      releaseInfo: null,\n    };\n  }\n}\n\nexport async function resolveSource(\n  options: SharedSyncOptions,\n  resolvedVersion: ResolvedVersion,\n): Promise<{ resolvedSource: ResolvedSource; tempDir: string | null; repository: string }> {\n  const logger = createLogger();\n  let resolvedSource: ResolvedSource;\n  let tempDir: string | null = null;\n\n  const spinner = logger.spinner(\"Resolving source...\");\n\n  try {\n    if (options.local !== undefined) {\n      spinner.start();\n      const localSourceOptions =\n        typeof options.local === \"string\" ? { path: resolvePath(options.local) } : {};\n      resolvedSource = await resolveLocalSource(localSourceOptions);\n      spinner.succeed(`Using local source: ${formatPath(resolvedSource.basePath)}`);\n      // For local sources, repository is empty string (no GitHub repo)\n      return { resolvedSource, tempDir, repository: \"\" };\n    }\n\n    // For GitHub sources, repository must be provided\n    const repository = options.source;\n    if (!repository) {\n      spinner.fail(\"No canonical source specified\");\n      logger.error(`No canonical source specified.\n\nSpecify a source using one of these methods:\n  1. CLI flag: agent-conf init --source acme/engineering-standards\n  2. Config file: Add 'source.repository' to .agent-conf.yaml\n\nExample .agent-conf.yaml:\n  source:\n    type: github\n    repository: acme/engineering-standards`);\n      process.exit(1);\n    }\n\n    spinner.start();\n    tempDir = await createTempDir();\n    const ref = resolvedVersion.ref;\n    spinner.text = `Cloning ${repository}@${ref}...`;\n    resolvedSource = await resolveGithubSource({ repository, ref }, tempDir);\n    spinner.succeed(`Cloned from GitHub: ${formatSourceString(resolvedSource.source)}`);\n    return { resolvedSource, tempDir, repository };\n  } catch (error) {\n    spinner.fail(\"Failed to resolve source\");\n    logger.error(error instanceof Error ? error.message : String(error));\n    if (tempDir) await removeTempDir(tempDir);\n    process.exit(1);\n  }\n}\n\nexport async function promptMergeOrOverride(\n  status: SyncStatus,\n  options: SharedSyncOptions,\n  tempDir: string | null,\n): Promise<boolean> {\n  let shouldOverride = options.override ?? false;\n\n  // If the repo has already been synced, the AGENTS.md was created by agent-conf,\n  // so we don't need to ask - just merge by default (unless --override is specified)\n  if (status.hasSynced) {\n    return shouldOverride;\n  }\n\n  if (status.agentsMdExists && !options.yes && !options.override) {\n    const action = await prompts.select({\n      message: \"An AGENTS.md file already exists. How would you like to proceed?\",\n      options: [\n        {\n          value: \"merge\",\n          label: \"Merge (recommended)\",\n          hint: \"Preserves your existing content in a repository-specific block\",\n        },\n        {\n          value: \"override\",\n          label: \"Override\",\n          hint: \"Replaces everything with fresh global standards\",\n        },\n      ],\n    });\n\n    if (prompts.isCancel(action)) {\n      prompts.cancel(\"Operation cancelled\");\n      if (tempDir) await removeTempDir(tempDir);\n      process.exit(0);\n    }\n\n    shouldOverride = action === \"override\";\n  }\n\n  return shouldOverride;\n}\n\n/**\n * Check for manually modified managed files and warn/prompt the user.\n * Returns true if sync should proceed, false if cancelled.\n */\nexport async function checkModifiedFilesBeforeSync(\n  targetDir: string,\n  targets: Target[],\n  options: SharedSyncOptions,\n  tempDir: string | null,\n): Promise<boolean> {\n  const modifiedFiles = await getModifiedManagedFiles(targetDir, targets);\n\n  if (modifiedFiles.length === 0) {\n    return true; // No modified files, proceed\n  }\n\n  const logger = createLogger();\n\n  // Show warning about modified files\n  console.log();\n  console.log(pc.yellow(`⚠ ${modifiedFiles.length} managed file(s) have been manually modified:`));\n  for (const file of modifiedFiles) {\n    const label = file.type === \"agents\" ? \"(global block)\" : \"\";\n    console.log(`  ${pc.yellow(\"~\")} ${file.path} ${pc.dim(label)}`);\n  }\n  console.log();\n\n  // In non-interactive mode, just warn and proceed\n  if (options.yes) {\n    logger.warn(\"Proceeding with sync (--yes flag). Modified files will be overwritten.\");\n    return true;\n  }\n\n  // Ask for confirmation\n  const proceed = await prompts.confirm({\n    message: \"These files will be overwritten. Continue with sync?\",\n    initialValue: false,\n  });\n\n  if (prompts.isCancel(proceed) || !proceed) {\n    prompts.cancel(\"Sync cancelled. Your modified files were preserved.\");\n    if (tempDir) await removeTempDir(tempDir);\n    process.exit(0);\n  }\n\n  return true;\n}\n\nexport interface PerformSyncOptions {\n  targetDir: string;\n  resolvedSource: ResolvedSource;\n  resolvedVersion: ResolvedVersion;\n  shouldOverride: boolean;\n  targets: Target[];\n  context: CommandContext;\n  tempDir: string | null;\n  yes?: boolean | undefined;\n  /** Source repository in owner/repo format (for GitHub sources) */\n  sourceRepo?: string;\n}\n\nexport async function performSync(options: PerformSyncOptions): Promise<void> {\n  const { targetDir, resolvedSource, resolvedVersion, shouldOverride, targets, context, tempDir } =\n    options;\n\n  const logger = createLogger();\n\n  // Read previous lockfile to detect orphaned skills later\n  const previousLockfile = await readLockfile(targetDir);\n  const previousSkills = previousLockfile?.content.skills ?? [];\n  const previousTargets = previousLockfile?.content.targets ?? [\"claude\"];\n\n  const syncSpinner = logger.spinner(\"Syncing...\");\n  syncSpinner.start();\n\n  try {\n    const syncOptions: Parameters<typeof sync>[2] = {\n      override: shouldOverride,\n      targets,\n    };\n    if (resolvedVersion.version) {\n      syncOptions.pinnedVersion = resolvedVersion.version;\n    }\n    const result = await sync(targetDir, resolvedSource, syncOptions);\n    syncSpinner.stop();\n\n    // Detect and handle orphaned skills\n    const orphanedSkills = findOrphanedSkills(previousSkills, result.skills.synced);\n    let orphanResult: { deleted: string[]; skipped: string[] } = { deleted: [], skipped: [] };\n\n    if (orphanedSkills.length > 0) {\n      // Determine which targets to check (union of previous and current)\n      const allTargets = [...new Set([...previousTargets, ...targets])];\n\n      if (options.yes) {\n        // Non-interactive mode: delete by default\n        orphanResult = await deleteOrphanedSkills(\n          targetDir,\n          orphanedSkills,\n          allTargets,\n          previousSkills,\n        );\n      } else {\n        // Interactive mode: prompt user\n        console.log();\n        console.log(\n          pc.yellow(\n            `⚠ ${orphanedSkills.length} skill(s) were previously synced but are no longer in the source:`,\n          ),\n        );\n        for (const skill of orphanedSkills) {\n          console.log(`  ${pc.yellow(\"·\")} ${skill}`);\n        }\n        console.log();\n\n        const deleteOrphans = await prompts.confirm({\n          message: \"Delete these orphaned skills?\",\n          initialValue: true,\n        });\n\n        if (prompts.isCancel(deleteOrphans)) {\n          // User cancelled, skip deletion but continue with sync summary\n          logger.info(\"Skipping orphan deletion.\");\n        } else if (deleteOrphans) {\n          orphanResult = await deleteOrphanedSkills(\n            targetDir,\n            orphanedSkills,\n            allTargets,\n            previousSkills,\n          );\n        }\n      }\n    }\n\n    // Show validation errors if any\n    if (result.skills.validationErrors.length > 0) {\n      console.log();\n      console.log(\n        pc.yellow(`⚠ ${result.skills.validationErrors.length} skill(s) have invalid frontmatter:`),\n      );\n      for (const error of result.skills.validationErrors) {\n        console.log(`  ${pc.yellow(\"!\")} ${error.skillName}/SKILL.md`);\n        for (const msg of error.errors) {\n          console.log(`      ${pc.dim(\"-\")} ${msg}`);\n        }\n      }\n      console.log();\n      console.log(pc.dim(\"Skills must have frontmatter with 'name' and 'description' fields.\"));\n    }\n\n    // Sync workflow files for GitHub sources only (not local)\n    // Workflows reference the same ref that was used for syncing\n    let workflowResult: WorkflowSyncResult | null = null;\n    if (resolvedVersion.ref !== \"local\" && options.sourceRepo) {\n      const workflowSpinner = logger.spinner(\"Syncing workflow files...\");\n      workflowSpinner.start();\n      // Use the version tag if it's a release, otherwise use the ref directly\n      const workflowRef =\n        resolvedVersion.isRelease && resolvedVersion.version\n          ? formatTag(resolvedVersion.version)\n          : resolvedVersion.ref;\n      workflowResult = await syncWorkflows(targetDir, workflowRef, options.sourceRepo);\n      workflowSpinner.stop();\n    }\n\n    // Install git hooks\n    const hookResult = await installPreCommitHook(targetDir);\n\n    // Summary\n    console.log();\n    console.log(pc.bold(\"Sync complete:\"));\n    console.log();\n\n    // AGENTS.md status\n    const agentsMdPath = formatPath(path.join(targetDir, \"AGENTS.md\"));\n    if (result.agentsMd.merged) {\n      const label = context.commandName === \"sync\" ? \"(updated)\" : \"(merged)\";\n      console.log(`  ${pc.green(\"+\")} ${agentsMdPath} ${pc.dim(label)}`);\n    } else {\n      console.log(`  ${pc.green(\"+\")} ${agentsMdPath} ${pc.dim(\"(created)\")}`);\n    }\n\n    // Per-target results\n    for (const targetResult of result.targets) {\n      const config = getTargetConfig(targetResult.target);\n\n      // Instructions file status (only for targets that use one, like Claude)\n      if (config.instructionsFile) {\n        const instructionsPath =\n          targetResult.instructionsMd.location === \"root\"\n            ? formatPath(path.join(targetDir, config.instructionsFile))\n            : formatPath(path.join(targetDir, config.dir, config.instructionsFile));\n\n        if (targetResult.instructionsMd.created) {\n          console.log(`  ${pc.green(\"+\")} ${instructionsPath} ${pc.dim(\"(created)\")}`);\n        } else if (targetResult.instructionsMd.updated) {\n          const hint = targetResult.instructionsMd.contentMerged\n            ? \"(content merged into AGENTS.md, reference added)\"\n            : \"(reference added)\";\n          console.log(`  ${pc.yellow(\"~\")} ${instructionsPath} ${pc.dim(hint)}`);\n        } else {\n          console.log(`  ${pc.dim(\"-\")} ${instructionsPath} ${pc.dim(\"(unchanged)\")}`);\n        }\n      }\n\n      // Skills status for this target\n      const skillsPath = formatPath(path.join(targetDir, config.dir, \"skills\"));\n      console.log(\n        `  ${pc.green(\"+\")} ${skillsPath}/ ${pc.dim(`(${result.skills.synced.length} skills, ${targetResult.skills.copied} files)`)}`,\n      );\n\n      // Orphan deletion status for this target\n      if (orphanResult.deleted.length > 0) {\n        for (const skill of orphanResult.deleted) {\n          const orphanPath = formatPath(path.join(targetDir, config.dir, \"skills\", skill));\n          console.log(\n            `  ${pc.red(\"-\")} ${orphanPath}/ ${pc.dim(\"(removed - no longer in source)\")}`,\n          );\n        }\n      }\n      if (orphanResult.skipped.length > 0) {\n        for (const skill of orphanResult.skipped) {\n          const orphanPath = formatPath(path.join(targetDir, config.dir, \"skills\", skill));\n          console.log(`  ${pc.yellow(\"!\")} ${orphanPath}/ ${pc.dim(\"(orphaned but skipped)\")}`);\n        }\n      }\n    }\n\n    // Workflow files status\n    if (workflowResult) {\n      for (const filename of workflowResult.created) {\n        const workflowPath = formatPath(path.join(targetDir, \".github/workflows\", filename));\n        console.log(`  ${pc.green(\"+\")} ${workflowPath} ${pc.dim(\"(created)\")}`);\n      }\n      for (const filename of workflowResult.updated) {\n        const workflowPath = formatPath(path.join(targetDir, \".github/workflows\", filename));\n        console.log(`  ${pc.yellow(\"~\")} ${workflowPath} ${pc.dim(\"(updated)\")}`);\n      }\n      for (const filename of workflowResult.unchanged) {\n        const workflowPath = formatPath(path.join(targetDir, \".github/workflows\", filename));\n        console.log(`  ${pc.dim(\"-\")} ${workflowPath} ${pc.dim(\"(unchanged)\")}`);\n      }\n    }\n\n    // Lockfile status\n    const lockfilePath = formatPath(path.join(targetDir, \".agent-conf\", \"agent-conf.lock\"));\n    console.log(`  ${pc.green(\"+\")} ${lockfilePath}`);\n\n    // Git hook status\n    const hookPath = formatPath(path.join(targetDir, \".git/hooks/pre-commit\"));\n    if (hookResult.installed) {\n      if (hookResult.alreadyExisted && !hookResult.wasUpdated) {\n        console.log(`  ${pc.dim(\"-\")} ${hookPath} ${pc.dim(\"(unchanged)\")}`);\n      } else if (hookResult.wasUpdated) {\n        console.log(`  ${pc.yellow(\"~\")} ${hookPath} ${pc.dim(\"(updated)\")}`);\n      } else {\n        console.log(`  ${pc.green(\"+\")} ${hookPath} ${pc.dim(\"(installed)\")}`);\n      }\n    } else if (hookResult.alreadyExisted) {\n      console.log(`  ${pc.yellow(\"!\")} ${hookPath} ${pc.dim(\"(skipped - custom hook exists)\")}`);\n    }\n\n    console.log();\n    console.log(pc.dim(`Source: ${formatSourceString(resolvedSource.source)}`));\n    if (resolvedVersion.version) {\n      console.log(pc.dim(`Version: ${resolvedVersion.version}`));\n    }\n    if (targets.length > 1) {\n      console.log(pc.dim(`Targets: ${targets.join(\", \")}`));\n    }\n\n    prompts.outro(pc.green(\"Done!\"));\n  } catch (error) {\n    syncSpinner.fail(\"Sync failed\");\n    logger.error(error instanceof Error ? error.message : String(error));\n    process.exit(1);\n  } finally {\n    if (tempDir) await removeTempDir(tempDir);\n  }\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport type { ResolvedConfig } from \"../config/schema.js\";\n\n// Default values for hook configuration\nconst DEFAULT_CLI_NAME = \"agent-conf\";\nconst DEFAULT_CONFIG_DIR = \".agent-conf\";\nconst DEFAULT_LOCKFILE_NAME = \"lockfile.json\";\n\n// Hook identifier for detecting managed hooks\nconst HOOK_IDENTIFIER = \"# agent-conf pre-commit hook\";\n\n/**\n * Configuration for hook generation.\n */\nexport interface HookConfig {\n  /** CLI command name (e.g., \"agent-conf\") */\n  cliName: string;\n  /** Config directory name (e.g., \".agent-conf\") */\n  configDir: string;\n  /** Lockfile name (e.g., \"lockfile.json\") */\n  lockfileName: string;\n}\n\n/**\n * Generate pre-commit hook content with configurable names.\n */\nexport function generatePreCommitHook(config: HookConfig): string {\n  const { cliName, configDir, lockfileName } = config;\n\n  return `#!/bin/bash\n# ${cliName} pre-commit hook\n# Prevents committing changes to managed files (skills and AGENTS.md global block)\n#\n# Installation:\n#   Copy this file to .git/hooks/pre-commit\n#   Or run: ${cliName} hooks install\n\nset -e\n\n# Get the repository root\nREPO_ROOT=$(git rev-parse --show-toplevel)\n\n# Check if ${cliName} has been synced\nif [ ! -f \"$REPO_ROOT/${configDir}/${lockfileName}\" ]; then\n    # Not synced, nothing to check\n    exit 0\nfi\n\n# Check if ${cliName} CLI is available\nif ! command -v ${cliName} &> /dev/null; then\n    # CLI not installed, skip check\n    exit 0\nfi\n\n# Run ${cliName} check and capture output\ncd \"$REPO_ROOT\"\nCHECK_OUTPUT=$(${cliName} check 2>&1) || CHECK_EXIT=$?\nCHECK_EXIT=\\${CHECK_EXIT:-0}\n\nif [ $CHECK_EXIT -ne 0 ]; then\n    echo \"\"\n    echo \"Error: Cannot commit changes to ${cliName}-managed files\"\n    echo \"\"\n    echo \"Output from '${cliName} check' command:\"\n    echo \"$CHECK_OUTPUT\"\n    echo \"\"\n    echo \"Options:\"\n    echo \"  1. Discard your changes: git checkout -- <file>\"\n    echo \"  2. Skip this check: git commit --no-verify\"\n    echo \"  3. Restore managed files: ${cliName} sync\"\n    echo \"  4. For AGENTS.md: edit only the repo-specific block (between repo:start and repo:end)\"\n    echo \"  5. For skills: create a new custom skill instead\"\n    echo \"\"\n    exit 1\nfi\n\nexit 0\n`;\n}\n\n/**\n * Get hook config from resolved config or use defaults.\n */\nexport function getHookConfig(config?: Partial<ResolvedConfig>): HookConfig {\n  return {\n    cliName: config?.cliName ?? DEFAULT_CLI_NAME,\n    configDir: config?.configDir ?? DEFAULT_CONFIG_DIR,\n    lockfileName: config?.lockfileName ?? DEFAULT_LOCKFILE_NAME,\n  };\n}\n\nexport interface HookInstallResult {\n  installed: boolean;\n  path: string;\n  alreadyExisted: boolean;\n  wasUpdated: boolean;\n}\n\n/**\n * Install the pre-commit hook in a git repository.\n * If a pre-commit hook already exists and is not from agent-conf, it will not be overwritten.\n */\nexport async function installPreCommitHook(\n  targetDir: string,\n  config?: Partial<ResolvedConfig>,\n): Promise<HookInstallResult> {\n  const hookConfig = getHookConfig(config);\n  const hooksDir = path.join(targetDir, \".git\", \"hooks\");\n  const hookPath = path.join(hooksDir, \"pre-commit\");\n\n  // Generate hook content\n  const hookContent = generatePreCommitHook(hookConfig);\n\n  // Ensure hooks directory exists\n  await fs.mkdir(hooksDir, { recursive: true });\n\n  // Check if hook already exists\n  let existingContent: string | null = null;\n  try {\n    existingContent = await fs.readFile(hookPath, \"utf-8\");\n  } catch {\n    // Hook doesn't exist\n  }\n\n  if (existingContent !== null) {\n    // Check if it's our hook (contains our identifier)\n    const isOurHook = existingContent.includes(HOOK_IDENTIFIER);\n\n    if (!isOurHook) {\n      // Not our hook, don't overwrite\n      return {\n        installed: false,\n        path: hookPath,\n        alreadyExisted: true,\n        wasUpdated: false,\n      };\n    }\n\n    // Check if content is the same\n    if (existingContent === hookContent) {\n      return {\n        installed: true,\n        path: hookPath,\n        alreadyExisted: true,\n        wasUpdated: false,\n      };\n    }\n\n    // Our hook but outdated, update it\n    await fs.writeFile(hookPath, hookContent, { mode: 0o755 });\n    return {\n      installed: true,\n      path: hookPath,\n      alreadyExisted: true,\n      wasUpdated: true,\n    };\n  }\n\n  // Install new hook\n  await fs.writeFile(hookPath, hookContent, { mode: 0o755 });\n  return {\n    installed: true,\n    path: hookPath,\n    alreadyExisted: false,\n    wasUpdated: false,\n  };\n}\n\n/**\n * Check if the pre-commit hook is installed.\n */\nexport async function isPreCommitHookInstalled(targetDir: string): Promise<boolean> {\n  const hookPath = path.join(targetDir, \".git\", \"hooks\", \"pre-commit\");\n\n  try {\n    const content = await fs.readFile(hookPath, \"utf-8\");\n    return content.includes(HOOK_IDENTIFIER);\n  } catch {\n    return false;\n  }\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport { type SimpleGit, simpleGit } from \"simple-git\";\nimport type { Source } from \"../schemas/lockfile.js\";\n\nexport interface ResolvedSource {\n  source: Source;\n  basePath: string;\n  agentsMdPath: string;\n  skillsPath: string;\n}\n\nexport interface LocalSourceOptions {\n  path?: string;\n}\n\nexport interface GithubSourceOptions {\n  repository: string;\n  ref: string;\n}\n\nconst DEFAULT_REF = \"master\";\n\nexport async function resolveLocalSource(\n  options: LocalSourceOptions = {},\n): Promise<ResolvedSource> {\n  let basePath: string;\n\n  if (options.path) {\n    basePath = path.resolve(options.path);\n  } else {\n    basePath = await findCanonicalRepo(process.cwd());\n  }\n\n  await validateCanonicalRepo(basePath);\n\n  const git: SimpleGit = simpleGit(basePath);\n  let commitSha: string | undefined;\n\n  try {\n    const log = await git.log({ maxCount: 1 });\n    commitSha = log.latest?.hash;\n  } catch {\n    // Not a git repo or git not available\n  }\n\n  const source: Source = {\n    type: \"local\",\n    path: basePath,\n    commit_sha: commitSha,\n  };\n\n  return {\n    source,\n    basePath,\n    agentsMdPath: path.join(basePath, \"instructions\", \"AGENTS.md\"),\n    skillsPath: path.join(basePath, \"skills\"),\n  };\n}\n\nexport async function resolveGithubSource(\n  options: GithubSourceOptions,\n  tempDir: string,\n): Promise<ResolvedSource> {\n  const { repository, ref = DEFAULT_REF } = options;\n  const repoUrl = `https://github.com/${repository}.git`;\n\n  const git: SimpleGit = simpleGit();\n  await git.clone(repoUrl, tempDir, [\"--depth\", \"1\", \"--branch\", ref]);\n\n  const clonedGit: SimpleGit = simpleGit(tempDir);\n  const log = await clonedGit.log({ maxCount: 1 });\n  const commitSha = log.latest?.hash ?? \"\";\n\n  const source: Source = {\n    type: \"github\",\n    repository,\n    commit_sha: commitSha,\n    ref,\n  };\n\n  return {\n    source,\n    basePath: tempDir,\n    agentsMdPath: path.join(tempDir, \"instructions\", \"AGENTS.md\"),\n    skillsPath: path.join(tempDir, \"skills\"),\n  };\n}\n\nasync function findCanonicalRepo(startDir: string): Promise<string> {\n  let currentDir = path.resolve(startDir);\n  const root = path.parse(currentDir).root;\n\n  // First, check if we're already inside the agent-conf repo\n  let checkDir = currentDir;\n  while (checkDir !== root) {\n    if (await isCanonicalRepo(checkDir)) {\n      return checkDir;\n    }\n    checkDir = path.dirname(checkDir);\n  }\n\n  // Otherwise, look for a sibling \"agent-conf\" directory\n  currentDir = path.resolve(startDir);\n  while (currentDir !== root) {\n    const parentDir = path.dirname(currentDir);\n    const siblingCanonicalRepo = path.join(parentDir, \"agent-conf\");\n\n    if (await isCanonicalRepo(siblingCanonicalRepo)) {\n      return siblingCanonicalRepo;\n    }\n\n    currentDir = parentDir;\n  }\n\n  throw new Error(\n    \"Could not find canonical repository. Please specify --local <path> or run from within the canonical repo.\",\n  );\n}\n\nasync function isCanonicalRepo(dir: string): Promise<boolean> {\n  try {\n    // Check directory exists\n    const stat = await fs.stat(dir).catch(() => null);\n    if (!stat?.isDirectory()) {\n      return false;\n    }\n\n    // Check for agent-conf structure\n    const instructionsPath = path.join(dir, \"instructions\", \"AGENTS.md\");\n    const skillsPath = path.join(dir, \"skills\");\n\n    const [instructionsExists, skillsExists] = await Promise.all([\n      fs\n        .access(instructionsPath)\n        .then(() => true)\n        .catch(() => false),\n      fs\n        .access(skillsPath)\n        .then(() => true)\n        .catch(() => false),\n    ]);\n\n    if (!instructionsExists || !skillsExists) {\n      return false;\n    }\n\n    // Optionally verify git remote contains \"agent-conf\"\n    try {\n      const git: SimpleGit = simpleGit(dir);\n      const remotes = await git.getRemotes(true);\n      const hasMatchingRemote = remotes.some(\n        (r) => r.refs.fetch?.includes(\"agent-conf\") || r.refs.push?.includes(\"agent-conf\"),\n      );\n      if (hasMatchingRemote) {\n        return true;\n      }\n    } catch {\n      // Git check failed, fall back to structure check only\n    }\n\n    // Structure matches, accept it even without git verification\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nasync function validateCanonicalRepo(basePath: string): Promise<void> {\n  const agentsMdPath = path.join(basePath, \"instructions\", \"AGENTS.md\");\n  const skillsPath = path.join(basePath, \"skills\");\n\n  const [agentsMdExists, skillsExists] = await Promise.all([\n    fs\n      .access(agentsMdPath)\n      .then(() => true)\n      .catch(() => false),\n    fs\n      .access(skillsPath)\n      .then(() => true)\n      .catch(() => false),\n  ]);\n\n  if (!agentsMdExists) {\n    throw new Error(`Invalid canonical repository: missing instructions/AGENTS.md at ${basePath}`);\n  }\n\n  if (!skillsExists) {\n    throw new Error(`Invalid canonical repository: missing skills/ directory at ${basePath}`);\n  }\n}\n\nexport function formatSourceString(source: Source): string {\n  if (source.type === \"github\") {\n    const sha = source.commit_sha.slice(0, 7);\n    return `github:${source.repository}@${sha}`;\n  }\n  if (source.commit_sha) {\n    return `local:${source.path}@${source.commit_sha.slice(0, 7)}`;\n  }\n  return `local:${source.path}`;\n}\n\nexport function getDefaultRef(): string {\n  return DEFAULT_REF;\n}\n","/**\n * Version resolution and management for agent-conf releases.\n *\n * Handles fetching release information from GitHub, parsing version strings,\n * and determining the appropriate version to use.\n */\n\nimport { execSync } from \"node:child_process\";\n\nconst GITHUB_API_BASE = \"https://api.github.com\";\n\n/**\n * Gets a GitHub token for API authentication.\n * Tries in order:\n * 1. GITHUB_TOKEN environment variable\n * 2. gh auth token (if gh CLI is installed)\n * Throws an error if no token is available.\n */\nfunction getGitHubToken(): string {\n  // First try environment variable\n  if (process.env.GITHUB_TOKEN) {\n    return process.env.GITHUB_TOKEN;\n  }\n\n  // Try gh CLI\n  try {\n    const token = execSync(\"gh auth token\", {\n      encoding: \"utf-8\",\n      stdio: [\"pipe\", \"pipe\", \"pipe\"],\n    }).trim();\n    if (token) {\n      return token;\n    }\n  } catch {\n    // gh CLI not available or not authenticated\n  }\n\n  throw new Error(\n    `GitHub authentication required to access agent-conf releases.\n\nTo fix this, do one of the following:\n\n1. Install and authenticate GitHub CLI (recommended):\n   brew install gh\n   gh auth login\n\n2. Set GITHUB_TOKEN environment variable:\n   export GITHUB_TOKEN=<your-personal-access-token>\n\n   Create a token at https://github.com/settings/tokens\n   with 'repo' scope for private repository access.`,\n  );\n}\n\n/**\n * Builds headers for GitHub API requests.\n * Includes Authorization header with required token.\n */\nfunction getGitHubHeaders(): Record<string, string> {\n  const token = getGitHubToken();\n  return {\n    Accept: \"application/vnd.github.v3+json\",\n    \"User-Agent\": \"agent-conf-cli\",\n    Authorization: `token ${token}`,\n  };\n}\n\nexport interface ReleaseInfo {\n  tag: string; // e.g., \"v1.2.0\"\n  version: string; // e.g., \"1.2.0\" (without 'v' prefix)\n  commitSha: string;\n  publishedAt: string;\n  tarballUrl: string;\n}\n\n/**\n * Fetches the latest release from a GitHub repository.\n */\nexport async function getLatestRelease(repo: string): Promise<ReleaseInfo> {\n  const url = `${GITHUB_API_BASE}/repos/${repo}/releases/latest`;\n\n  const response = await fetch(url, {\n    headers: getGitHubHeaders(),\n  });\n\n  if (!response.ok) {\n    if (response.status === 404) {\n      throw new Error(\"No releases found for agent-conf repository\");\n    }\n    throw new Error(`Failed to fetch latest release: ${response.statusText}`);\n  }\n\n  const data: unknown = await response.json();\n  return parseReleaseResponse(data as Record<string, unknown>);\n}\n\n/**\n * Fetches a specific release by tag from a GitHub repository.\n */\nexport async function getReleaseByTag(repo: string, tag: string): Promise<ReleaseInfo> {\n  // Ensure tag has 'v' prefix\n  const normalizedTag = tag.startsWith(\"v\") ? tag : `v${tag}`;\n  const url = `${GITHUB_API_BASE}/repos/${repo}/releases/tags/${normalizedTag}`;\n\n  const response = await fetch(url, {\n    headers: getGitHubHeaders(),\n  });\n\n  if (!response.ok) {\n    if (response.status === 404) {\n      throw new Error(`Release ${normalizedTag} not found`);\n    }\n    throw new Error(`Failed to fetch release ${normalizedTag}: ${response.statusText}`);\n  }\n\n  const data: unknown = await response.json();\n  return parseReleaseResponse(data as Record<string, unknown>);\n}\n\n/**\n * Lists all releases from a GitHub repository.\n */\nexport async function listReleases(repo: string, limit = 10): Promise<ReleaseInfo[]> {\n  const url = `${GITHUB_API_BASE}/repos/${repo}/releases?per_page=${limit}`;\n\n  const response = await fetch(url, {\n    headers: getGitHubHeaders(),\n  });\n\n  if (!response.ok) {\n    throw new Error(`Failed to fetch releases: ${response.statusText}`);\n  }\n\n  const data: unknown = await response.json();\n  return (data as Record<string, unknown>[]).map(parseReleaseResponse);\n}\n\n/**\n * Parses a GitHub release API response into ReleaseInfo.\n */\nfunction parseReleaseResponse(data: Record<string, unknown>): ReleaseInfo {\n  const tag = data.tag_name as string;\n  return {\n    tag,\n    version: parseVersion(tag),\n    commitSha: (data.target_commitish as string) || \"\",\n    publishedAt: data.published_at as string,\n    tarballUrl: data.tarball_url as string,\n  };\n}\n\n/**\n * Parses a version tag into a clean version string.\n * \"v1.2.0\" -> \"1.2.0\"\n * \"1.2.0\" -> \"1.2.0\"\n */\nexport function parseVersion(tag: string): string {\n  return tag.startsWith(\"v\") ? tag.slice(1) : tag;\n}\n\n/**\n * Formats a version string as a tag.\n * \"1.2.0\" -> \"v1.2.0\"\n * \"v1.2.0\" -> \"v1.2.0\"\n */\nexport function formatTag(version: string): string {\n  return version.startsWith(\"v\") ? version : `v${version}`;\n}\n\n/**\n * Checks if a ref is a version tag (e.g., \"v1.2.0\" or \"1.2.0\").\n */\nexport function isVersionRef(ref: string): boolean {\n  const normalized = ref.startsWith(\"v\") ? ref.slice(1) : ref;\n  return /^\\d+\\.\\d+\\.\\d+(-[\\w.]+)?$/.test(normalized);\n}\n\n/**\n * Checks if a ref is a branch name (e.g., \"master\", \"main\", \"develop\").\n */\nexport function isBranchRef(ref: string): boolean {\n  return !isVersionRef(ref);\n}\n\n/**\n * Resolves a ref to release info.\n * - \"latest\" -> fetches latest release\n * - \"v1.2.0\" or \"1.2.0\" -> fetches specific release\n * - \"master\" or other branch -> returns null (not a release)\n */\nexport async function resolveRef(repo: string, ref: string): Promise<ReleaseInfo | null> {\n  if (ref === \"latest\") {\n    return getLatestRelease(repo);\n  }\n\n  if (isVersionRef(ref)) {\n    return getReleaseByTag(repo, ref);\n  }\n\n  // Branch ref - not a release\n  return null;\n}\n\n/**\n * Compares two semantic versions.\n * Returns: -1 if a < b, 0 if a == b, 1 if a > b\n */\nexport function compareVersions(a: string, b: string): number {\n  const parseVer = (v: string) => {\n    const clean = v.startsWith(\"v\") ? v.slice(1) : v;\n    const [main, prerelease] = clean.split(\"-\");\n    const parts = (main ?? \"\").split(\".\").map(Number);\n    return { parts, prerelease };\n  };\n\n  const verA = parseVer(a);\n  const verB = parseVer(b);\n\n  // Compare major.minor.patch\n  for (let i = 0; i < 3; i++) {\n    const partA = verA.parts[i] || 0;\n    const partB = verB.parts[i] || 0;\n    if (partA < partB) return -1;\n    if (partA > partB) return 1;\n  }\n\n  // Handle prerelease (1.0.0-alpha < 1.0.0)\n  if (verA.prerelease && !verB.prerelease) return -1;\n  if (!verA.prerelease && verB.prerelease) return 1;\n  if (verA.prerelease && verB.prerelease) {\n    return verA.prerelease.localeCompare(verB.prerelease);\n  }\n\n  return 0;\n}\n\n/**\n * Gets the download URL for a CLI tarball from a release.\n */\nexport function getCliTarballUrl(repo: string, version: string): string {\n  const tag = formatTag(version);\n  return `https://github.com/${repo}/releases/download/${tag}/agent-conf-cli-${tag}.tar.gz`;\n}\n\n/**\n * Gets the download URL for the latest CLI tarball.\n */\nexport function getLatestCliTarballUrl(repo: string): string {\n  return `https://github.com/${repo}/releases/latest/download/agent-conf-cli.tar.gz`;\n}\n","/**\n * GitHub workflow file management for agent-conf.\n *\n * Handles creating, reading, and updating workflow files in downstream repositories.\n * These workflow files call the reusable workflows in the canonical repository.\n */\n\nimport * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport type { ResolvedConfig } from \"../config/schema.js\";\nimport { formatTag } from \"./version.js\";\n\n// Default values\nconst DEFAULT_CLI_NAME = \"agent-conf\";\nconst WORKFLOWS_DIR = \".github/workflows\";\n\n/**\n * Configuration for workflow generation.\n */\nexport interface WorkflowConfig {\n  /** Source repository in owner/repo format */\n  sourceRepo: string;\n  /** CLI command name */\n  cliName: string;\n  /** GitHub secret name for the token */\n  secretName: string;\n  /** Workflow filename prefix (e.g., \"agent-conf\" -> \"agent-conf-sync.yml\") */\n  workflowPrefix: string;\n}\n\n/**\n * Get workflow config from resolved config and source repo.\n * sourceRepo is required - there is no default content repository.\n */\nexport function getWorkflowConfig(\n  sourceRepo: string,\n  config?: Partial<ResolvedConfig>,\n): WorkflowConfig {\n  const name = config?.name ?? DEFAULT_CLI_NAME;\n  // Convert name to uppercase for secret name (e.g., \"agent-conf\" -> \"AGENT_CONF\")\n  const secretName = `${name.toUpperCase().replace(/-/g, \"_\")}_TOKEN`;\n\n  return {\n    sourceRepo,\n    cliName: config?.cliName ?? DEFAULT_CLI_NAME,\n    secretName,\n    workflowPrefix: name,\n  };\n}\n\nexport interface WorkflowFile {\n  name: string;\n  filename: string;\n  reusableWorkflow: string;\n}\n\n/**\n * Get workflow file definitions for a given config.\n */\nexport function getWorkflowFiles(config: WorkflowConfig): WorkflowFile[] {\n  const prefix = config.workflowPrefix;\n  return [\n    {\n      name: \"sync\",\n      filename: `${prefix}-sync.yml`,\n      reusableWorkflow: \"sync-reusable.yml\",\n    },\n    {\n      name: \"check\",\n      filename: `${prefix}-check.yml`,\n      reusableWorkflow: \"check-reusable.yml\",\n    },\n  ];\n}\n\nexport interface WorkflowStatus {\n  exists: boolean;\n  currentRef?: string;\n  isManaged: boolean;\n}\n\n/**\n * Gets the path to the workflows directory in a repository.\n */\nexport function getWorkflowsDir(repoRoot: string): string {\n  return path.join(repoRoot, WORKFLOWS_DIR);\n}\n\n/**\n * Gets the path to a specific workflow file.\n */\nexport function getWorkflowPath(repoRoot: string, filename: string): string {\n  return path.join(repoRoot, WORKFLOWS_DIR, filename);\n}\n\n/**\n * Checks the status of a workflow file.\n */\nexport async function getWorkflowStatus(\n  repoRoot: string,\n  workflow: WorkflowFile,\n  config: WorkflowConfig,\n): Promise<WorkflowStatus> {\n  const filePath = getWorkflowPath(repoRoot, workflow.filename);\n\n  try {\n    const content = await fs.readFile(filePath, \"utf-8\");\n    const currentRef = extractWorkflowRef(content, workflow.reusableWorkflow, config.sourceRepo);\n    const isManaged =\n      content.includes(`# Managed by ${config.cliName}`) || content.includes(config.sourceRepo);\n\n    const result: WorkflowStatus = { exists: true, isManaged };\n    if (currentRef !== undefined) result.currentRef = currentRef;\n    return result;\n  } catch {\n    return {\n      exists: false,\n      isManaged: false,\n    };\n  }\n}\n\n/**\n * Extracts the version ref from a workflow file content.\n * Looks for: uses: owner/repo/.github/workflows/name.yml@ref\n */\nexport function extractWorkflowRef(\n  content: string,\n  reusableWorkflow: string,\n  sourceRepo: string,\n): string | undefined {\n  const pattern = new RegExp(\n    `uses:\\\\s*${escapeRegex(sourceRepo)}\\\\/.github\\\\/workflows\\\\/${reusableWorkflow}@([^\\\\s]+)`,\n  );\n  const match = content.match(pattern);\n  return match?.[1];\n}\n\n/**\n * Updates the version ref in a workflow file content.\n */\nexport function updateWorkflowRef(\n  content: string,\n  reusableWorkflow: string,\n  newRef: string,\n  sourceRepo: string,\n): string {\n  const pattern = new RegExp(\n    `(uses:\\\\s*${escapeRegex(sourceRepo)}\\\\/.github\\\\/workflows\\\\/${reusableWorkflow})@[^\\\\s]+`,\n    \"g\",\n  );\n  return content.replace(pattern, `$1@${newRef}`);\n}\n\n/**\n * Generates the content for the sync workflow file.\n */\nexport function generateSyncWorkflow(versionRef: string, config: WorkflowConfig): string {\n  const { sourceRepo, cliName, secretName } = config;\n\n  return `# ${cliName} Auto-Sync Workflow\n# Managed by ${cliName} CLI - do not edit the version ref manually\n#\n# This workflow syncs standards from the central repository.\n# Version changes should be made using: ${cliName} sync --ref <version>\n#\n# TOKEN: Requires a PAT with read access to the source repository.\n# Create a fine-grained PAT at https://github.com/settings/tokens?type=beta\n# with read access to ${sourceRepo}, then add it as ${secretName} secret.\n\nname: ${cliName} Sync\n\non:\n  schedule:\n    - cron: '0 6 * * *'  # Daily at 6am UTC\n\n  workflow_dispatch:\n    inputs:\n      force:\n        description: 'Force sync even if no updates detected'\n        required: false\n        default: false\n        type: boolean\n\n  repository_dispatch:\n    types: [${cliName.replace(/-/g, \"_\")}-release]\n\nconcurrency:\n  group: ${cliName}-sync\n  cancel-in-progress: false\n\njobs:\n  sync:\n    uses: ${sourceRepo}/.github/workflows/sync-reusable.yml@${versionRef}\n    with:\n      force: \\${{ inputs.force || false }}\n      reviewers: \\${{ vars.${secretName.replace(/_TOKEN$/, \"_REVIEWERS\")} || '' }}\n    secrets:\n      token: \\${{ secrets.${secretName} }}\n`;\n}\n\n/**\n * Generates the content for the check workflow file.\n */\nexport function generateCheckWorkflow(versionRef: string, config: WorkflowConfig): string {\n  const { sourceRepo, cliName, secretName } = config;\n\n  return `# ${cliName} File Integrity Check\n# Managed by ${cliName} CLI - do not edit the version ref manually\n#\n# This workflow checks that ${cliName}-managed files haven't been modified.\n# Version changes should be made using: ${cliName} sync --ref <version>\n#\n# TOKEN: Requires a PAT with read access to the source repository.\n# Create a fine-grained PAT at https://github.com/settings/tokens?type=beta\n# with read access to ${sourceRepo}, then add it as ${secretName} secret.\n\nname: ${cliName} Check\n\non:\n  pull_request:\n    paths:\n      - '.claude/skills/**'\n      - '.codex/skills/**'\n      - 'AGENTS.md'\n  push:\n    paths:\n      - '.claude/skills/**'\n      - '.codex/skills/**'\n      - 'AGENTS.md'\n\njobs:\n  check:\n    uses: ${sourceRepo}/.github/workflows/check-reusable.yml@${versionRef}\n    secrets:\n      token: \\${{ secrets.${secretName} }}\n`;\n}\n\n/**\n * Generates workflow content for a specific workflow type.\n */\nexport function generateWorkflow(\n  workflow: WorkflowFile,\n  versionRef: string,\n  config: WorkflowConfig,\n): string {\n  switch (workflow.name) {\n    case \"sync\":\n      return generateSyncWorkflow(versionRef, config);\n    case \"check\":\n      return generateCheckWorkflow(versionRef, config);\n    default:\n      throw new Error(`Unknown workflow: ${workflow.name}`);\n  }\n}\n\n/**\n * Ensures the workflows directory exists.\n */\nexport async function ensureWorkflowsDir(repoRoot: string): Promise<void> {\n  const dir = getWorkflowsDir(repoRoot);\n  await fs.mkdir(dir, { recursive: true });\n}\n\n/**\n * Writes a workflow file to the repository.\n */\nexport async function writeWorkflow(\n  repoRoot: string,\n  workflow: WorkflowFile,\n  versionRef: string,\n  config: WorkflowConfig,\n): Promise<void> {\n  await ensureWorkflowsDir(repoRoot);\n  const filePath = getWorkflowPath(repoRoot, workflow.filename);\n  const content = generateWorkflow(workflow, versionRef, config);\n  await fs.writeFile(filePath, content, \"utf-8\");\n}\n\n/**\n * Updates the version ref in an existing workflow file.\n */\nexport async function updateWorkflowVersion(\n  repoRoot: string,\n  workflow: WorkflowFile,\n  newRef: string,\n  config: WorkflowConfig,\n): Promise<boolean> {\n  const filePath = getWorkflowPath(repoRoot, workflow.filename);\n\n  try {\n    const content = await fs.readFile(filePath, \"utf-8\");\n    const currentRef = extractWorkflowRef(content, workflow.reusableWorkflow, config.sourceRepo);\n\n    if (currentRef === newRef) {\n      return false; // No change needed\n    }\n\n    const updatedContent = updateWorkflowRef(\n      content,\n      workflow.reusableWorkflow,\n      newRef,\n      config.sourceRepo,\n    );\n    await fs.writeFile(filePath, updatedContent, \"utf-8\");\n    return true;\n  } catch {\n    // File doesn't exist, create it\n    await writeWorkflow(repoRoot, workflow, newRef, config);\n    return true;\n  }\n}\n\n/**\n * Result of syncing all workflow files.\n */\nexport interface WorkflowSyncResult {\n  created: string[];\n  updated: string[];\n  unchanged: string[];\n}\n\n/**\n * Syncs all workflow files to a specific version.\n * Always overwrites existing workflow files if they differ from the expected content.\n */\nexport async function syncWorkflows(\n  repoRoot: string,\n  versionRef: string,\n  sourceRepo: string,\n  resolvedConfig?: Partial<ResolvedConfig>,\n): Promise<WorkflowSyncResult> {\n  const config = getWorkflowConfig(sourceRepo, resolvedConfig);\n  const workflowFiles = getWorkflowFiles(config);\n\n  const result: WorkflowSyncResult = {\n    created: [],\n    updated: [],\n    unchanged: [],\n  };\n\n  for (const workflow of workflowFiles) {\n    const filePath = getWorkflowPath(repoRoot, workflow.filename);\n    const expectedContent = generateWorkflow(workflow, versionRef, config);\n\n    let existingContent: string | null = null;\n    try {\n      existingContent = await fs.readFile(filePath, \"utf-8\");\n    } catch {\n      // File doesn't exist\n    }\n\n    if (existingContent === null) {\n      // File doesn't exist, create it\n      await writeWorkflow(repoRoot, workflow, versionRef, config);\n      result.created.push(workflow.filename);\n    } else if (existingContent !== expectedContent) {\n      // File exists but differs from expected content, overwrite it\n      await writeWorkflow(repoRoot, workflow, versionRef, config);\n      result.updated.push(workflow.filename);\n    } else {\n      // File exists and matches expected content\n      result.unchanged.push(workflow.filename);\n    }\n  }\n\n  return result;\n}\n\n/**\n * Gets the current version ref from workflow files.\n * Returns the ref if all workflows have the same version, or undefined if mixed/missing.\n */\nexport async function getCurrentWorkflowVersion(\n  repoRoot: string,\n  sourceRepo: string,\n  resolvedConfig?: Partial<ResolvedConfig>,\n): Promise<string | undefined> {\n  const config = getWorkflowConfig(sourceRepo, resolvedConfig);\n  const workflowFiles = getWorkflowFiles(config);\n  const refs: (string | undefined)[] = [];\n\n  for (const workflow of workflowFiles) {\n    const status = await getWorkflowStatus(repoRoot, workflow, config);\n    refs.push(status.currentRef);\n  }\n\n  // Check if all refs are the same and defined\n  const uniqueRefs = [...new Set(refs.filter(Boolean))];\n  if (uniqueRefs.length === 1) {\n    return uniqueRefs[0];\n  }\n\n  return undefined;\n}\n\n/**\n * Formats a version for use as a workflow ref.\n * For version tags, uses the full tag (v1.2.0).\n * For branches, uses the branch name as-is.\n */\nexport function formatWorkflowRef(ref: string, isVersion: boolean): string {\n  if (isVersion) {\n    return formatTag(ref);\n  }\n  return ref;\n}\n\n/**\n * Escape special regex characters in a string.\n */\nfunction escapeRegex(str: string): string {\n  return str.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n}\n","import * as fs from \"node:fs/promises\";\nimport * as os from \"node:os\";\nimport * as path from \"node:path\";\n\nexport async function ensureDir(dirPath: string): Promise<void> {\n  await fs.mkdir(dirPath, { recursive: true });\n}\n\nexport async function fileExists(filePath: string): Promise<boolean> {\n  try {\n    await fs.access(filePath);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\nexport async function directoryExists(dirPath: string): Promise<boolean> {\n  try {\n    const stat = await fs.stat(dirPath);\n    return stat.isDirectory();\n  } catch {\n    return false;\n  }\n}\n\nexport async function createTempDir(prefix: string = \"agent-conf-\"): Promise<string> {\n  const tmpDir = os.tmpdir();\n  return fs.mkdtemp(path.join(tmpDir, prefix));\n}\n\nexport async function removeTempDir(dirPath: string): Promise<void> {\n  try {\n    await fs.rm(dirPath, { recursive: true, force: true });\n  } catch {\n    // Ignore errors during cleanup\n  }\n}\n\nexport function resolvePath(inputPath: string): string {\n  if (inputPath.startsWith(\"~\")) {\n    return path.join(os.homedir(), inputPath.slice(1));\n  }\n  return path.resolve(inputPath);\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport { type SimpleGit, simpleGit } from \"simple-git\";\n\n/**\n * Check if a directory exists.\n */\nasync function directoryExistsForGit(dir: string): Promise<boolean> {\n  try {\n    const stat = await fs.stat(dir);\n    return stat.isDirectory();\n  } catch {\n    return false;\n  }\n}\n\nexport interface GitInfo {\n  isGitRepo: boolean;\n  branch?: string;\n  commitSha?: string;\n  isDirty?: boolean;\n}\n\nexport async function getGitInfo(dir: string): Promise<GitInfo> {\n  const git: SimpleGit = simpleGit(dir);\n\n  try {\n    const isRepo = await git.checkIsRepo();\n    if (!isRepo) {\n      return { isGitRepo: false };\n    }\n\n    const [branch, log, status] = await Promise.all([\n      git\n        .branch()\n        .then((b) => b.current)\n        .catch(() => undefined),\n      git\n        .log({ maxCount: 1 })\n        .then((l) => l.latest?.hash)\n        .catch(() => undefined),\n      git\n        .status()\n        .then((s) => !s.isClean())\n        .catch(() => undefined),\n    ]);\n\n    const result: GitInfo = { isGitRepo: true };\n    if (branch !== undefined) result.branch = branch;\n    if (log !== undefined) result.commitSha = log;\n    if (status !== undefined) result.isDirty = status;\n    return result;\n  } catch {\n    return { isGitRepo: false };\n  }\n}\n\nexport async function isGitRepo(dir: string): Promise<boolean> {\n  const git: SimpleGit = simpleGit(dir);\n  try {\n    return await git.checkIsRepo();\n  } catch {\n    return false;\n  }\n}\n\nexport async function getGitRoot(dir: string): Promise<string | null> {\n  if (!(await directoryExistsForGit(dir))) {\n    return null;\n  }\n  try {\n    const git: SimpleGit = simpleGit(dir);\n    const isRepo = await git.checkIsRepo();\n    if (!isRepo) {\n      return null;\n    }\n    // Get the root directory of the git repository\n    const root = await git.revparse([\"--show-toplevel\"]);\n    return root.trim();\n  } catch {\n    return null;\n  }\n}\n\n/**\n * Get the git project name (basename of the git root directory).\n * Returns null if not in a git repository or directory doesn't exist.\n */\nexport async function getGitProjectName(dir: string): Promise<string | null> {\n  const gitRoot = await getGitRoot(dir);\n  if (!gitRoot) {\n    return null;\n  }\n  return path.basename(gitRoot);\n}\n\n/**\n * Check if the given directory is the root of a git repository.\n * Returns false if directory doesn't exist.\n */\nexport async function isGitRoot(dir: string): Promise<boolean> {\n  if (!(await directoryExistsForGit(dir))) {\n    return false;\n  }\n  const gitRoot = await getGitRoot(dir);\n  if (!gitRoot) {\n    return false;\n  }\n  // Resolve real paths to handle symlinks (e.g., macOS /var -> /private/var)\n  try {\n    const realDir = await fs.realpath(dir);\n    const realGitRoot = await fs.realpath(gitRoot);\n    return realDir === realGitRoot;\n  } catch {\n    // Fallback to simple comparison if realpath fails\n    return path.resolve(dir) === path.resolve(gitRoot);\n  }\n}\n\n/**\n * Get git config value.\n * Returns undefined if directory doesn't exist, not in a git repo, or config not set.\n */\nexport async function getGitConfig(dir: string, key: string): Promise<string | undefined> {\n  if (!(await directoryExistsForGit(dir))) {\n    return undefined;\n  }\n  try {\n    const git: SimpleGit = simpleGit(dir);\n    const isRepo = await git.checkIsRepo();\n    if (!isRepo) {\n      return undefined;\n    }\n    const value = await git.getConfig(key);\n    return value.value ?? undefined;\n  } catch {\n    return undefined;\n  }\n}\n\n/**\n * Get organization name from git config or remote URL.\n * Returns undefined if directory doesn't exist or not in a git repo.\n * Tries to extract org from remote origin URL first, then falls back to user.name.\n */\nexport async function getGitOrganization(dir: string): Promise<string | undefined> {\n  if (!(await directoryExistsForGit(dir))) {\n    return undefined;\n  }\n  try {\n    const git: SimpleGit = simpleGit(dir);\n    const isRepo = await git.checkIsRepo();\n    if (!isRepo) {\n      return undefined;\n    }\n\n    // Try to extract organization from remote origin URL\n    const remotes = await git.getRemotes(true);\n    const origin = remotes.find((r) => r.name === \"origin\");\n    if (origin?.refs.fetch) {\n      const url = origin.refs.fetch;\n      // Match patterns like:\n      // https://github.com/org/repo.git\n      // git@github.com:org/repo.git\n      const httpsMatch = url.match(/github\\.com\\/([^/]+)\\//);\n      const sshMatch = url.match(/github\\.com:([^/]+)\\//);\n      const org = httpsMatch?.[1] ?? sshMatch?.[1];\n      if (org) {\n        return org;\n      }\n    }\n\n    // Fallback to user.name from git config\n    const userName = await git.getConfig(\"user.name\");\n    return userName.value ?? undefined;\n  } catch {\n    return undefined;\n  }\n}\n","import * as fs from \"node:fs/promises\";\nimport * as path from \"node:path\";\nimport * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { stringify as stringifyYaml } from \"yaml\";\nimport { directoryExists, ensureDir, fileExists } from \"../utils/fs.js\";\nimport { getGitOrganization, getGitProjectName, isGitRoot } from \"../utils/git.js\";\nimport { createLogger, formatPath } from \"../utils/logger.js\";\n\nexport interface InitCanonicalRepoOptions {\n  /** Canonical repo name */\n  name?: string | undefined;\n  /** Organization name */\n  org?: string | undefined;\n  /** Target directory (default: cwd) */\n  dir?: string | undefined;\n  /** Marker prefix (default: \"agent-conf\") */\n  markerPrefix?: string | undefined;\n  /** Include example skill (default: true) */\n  includeExamples?: boolean | undefined;\n  /** Non-interactive mode */\n  yes?: boolean | undefined;\n}\n\ninterface ResolvedOptions {\n  name: string;\n  organization?: string | undefined;\n  targetDir: string;\n  markerPrefix: string;\n  includeExamples: boolean;\n}\n\n/**\n * Generates the agent-conf.yaml configuration file content.\n */\nfunction generateConfigYaml(options: ResolvedOptions): string {\n  const config: Record<string, unknown> = {\n    version: \"1\",\n    meta: {\n      name: options.name,\n    },\n    content: {\n      instructions: \"instructions/AGENTS.md\",\n      skills_dir: \"skills\",\n    },\n    targets: [\"claude\"],\n    markers: {\n      prefix: options.markerPrefix,\n    },\n    merge: {\n      preserve_repo_content: true,\n    },\n  };\n\n  if (options.organization) {\n    (config.meta as Record<string, unknown>).organization = options.organization;\n  }\n\n  return stringifyYaml(config, { lineWidth: 0 });\n}\n\n/**\n * Generates a template AGENTS.md file.\n */\nfunction generateAgentsMd(options: ResolvedOptions): string {\n  const orgName = options.organization ?? \"Your Organization\";\n  return `# ${orgName} Engineering Standards for AI Agents\n\nThis document defines company-wide engineering standards that all AI coding agents must follow.\n\n## Purpose\n\nThese standards ensure consistency, maintainability, and operational excellence across all engineering projects.\n\n---\n\n## Development Principles\n\n### Code Quality\n\n- Write clean, readable code with meaningful names\n- Follow existing patterns in the codebase\n- Keep functions small and focused\n- Add comments only when the \"why\" isn't obvious\n\n### Testing\n\n- Write tests for new functionality\n- Ensure tests are deterministic and fast\n- Use descriptive test names\n\n---\n\n## Getting Started\n\nAdd your organization's specific engineering standards below.\n\n---\n\n**Version**: 1.0\n**Last Updated**: ${new Date().toISOString().split(\"T\")[0]}\n`;\n}\n\n/**\n * Generates an example skill SKILL.md file.\n */\nfunction generateExampleSkillMd(): string {\n  return `---\nname: example-skill\ndescription: An example skill demonstrating the skill format\n---\n\n# Example Skill\n\nThis is an example skill that demonstrates the skill format.\n\n## When to Use\n\nUse this skill when you need an example of how skills are structured.\n\n## Instructions\n\n1. Skills are defined in their own directories under \\`skills/\\`\n2. Each skill has a \\`SKILL.md\\` file with frontmatter\n3. The frontmatter must include \\`name\\` and \\`description\\`\n4. Optional: Include a \\`references/\\` directory for additional files\n\n## Example\n\n\\`\\`\\`\nskills/\n  example-skill/\n    SKILL.md\n    references/\n      .gitkeep\n\\`\\`\\`\n`;\n}\n\n/**\n * Generates the sync workflow file content.\n */\nfunction generateSyncWorkflow(repoFullName: string, prefix: string): string {\n  return `# ${prefix} Auto-Sync Workflow (Reusable)\n# This workflow is called by downstream repositories.\n#\n# Downstream repos will reference this workflow like:\n#   uses: ${repoFullName}/.github/workflows/sync-reusable.yml@v1.0.0\n#\n# TOKEN: Requires a token with read access to the canonical repository.\n# The default GITHUB_TOKEN is used for operations on the downstream repo.\n\nname: Sync Reusable\n\non:\n  workflow_call:\n    inputs:\n      force:\n        description: 'Force sync even if no updates detected'\n        required: false\n        default: false\n        type: boolean\n      commit_strategy:\n        description: 'How to commit changes: \"pr\" (create pull request) or \"direct\" (commit to current branch)'\n        required: false\n        default: 'pr'\n        type: string\n      pr_branch_prefix:\n        description: 'Branch prefix for PR branches'\n        required: false\n        default: '${prefix}/sync'\n        type: string\n      pr_title:\n        description: 'Pull request title'\n        required: false\n        default: 'chore(${prefix}): sync agent configuration'\n        type: string\n      reviewers:\n        description: 'PR reviewers (comma-separated GitHub usernames)'\n        required: false\n        type: string\n      commit_message:\n        description: 'Commit message for direct commits'\n        required: false\n        default: 'chore(${prefix}): sync agent configuration'\n        type: string\n    secrets:\n      token:\n        description: 'GitHub token with read access to the canonical repository'\n        required: true\n    outputs:\n      changes_detected:\n        description: 'Whether changes were detected after sync'\n        value: \\${{ jobs.sync.outputs.changes_detected }}\n      pr_number:\n        description: 'Pull request number (if PR strategy and changes detected)'\n        value: \\${{ jobs.sync.outputs.pr_number }}\n      pr_url:\n        description: 'Pull request URL (if PR strategy and changes detected)'\n        value: \\${{ jobs.sync.outputs.pr_url }}\n\njobs:\n  sync:\n    runs-on: ubuntu-latest\n    permissions:\n      contents: write\n      pull-requests: write\n    outputs:\n      changes_detected: \\${{ steps.check-changes.outputs.changes_detected }}\n      pr_number: \\${{ steps.create-pr.outputs.pr_number }}\n      pr_url: \\${{ steps.create-pr.outputs.pr_url }}\n    steps:\n      - name: Checkout\n        uses: actions/checkout@v4\n        with:\n          fetch-depth: 0\n\n      - name: Setup Node.js\n        uses: actions/setup-node@v4\n        with:\n          node-version: '20'\n\n      - name: Install agent-conf CLI\n        run: npm install -g agent-conf\n\n      - name: Run sync\n        run: agent-conf sync --yes\n        env:\n          GITHUB_TOKEN: \\${{ secrets.token }}\n\n      - name: Check for changes\n        id: check-changes\n        run: |\n          if [ -n \"\\$(git status --porcelain)\" ]; then\n            echo \"changes_detected=true\" >> \\$GITHUB_OUTPUT\n            echo \"Changes detected after sync\"\n            git status --short\n          else\n            echo \"changes_detected=false\" >> \\$GITHUB_OUTPUT\n            echo \"No changes detected after sync\"\n          fi\n\n      - name: Configure git\n        if: steps.check-changes.outputs.changes_detected == 'true'\n        run: |\n          git config user.name \"github-actions[bot]\"\n          git config user.email \"github-actions[bot]@users.noreply.github.com\"\n\n      - name: Create PR branch and commit\n        if: steps.check-changes.outputs.changes_detected == 'true' && inputs.commit_strategy == 'pr'\n        run: |\n          BRANCH_NAME=\"\\${{ inputs.pr_branch_prefix }}-\\$(date +%Y%m%d-%H%M%S)\"\n          git checkout -b \"\\$BRANCH_NAME\"\n          git add -A\n          git commit -m \"\\${{ inputs.pr_title }}\"\n          git push -u origin \"\\$BRANCH_NAME\"\n          echo \"BRANCH_NAME=\\$BRANCH_NAME\" >> \\$GITHUB_ENV\n\n      - name: Create pull request\n        id: create-pr\n        if: steps.check-changes.outputs.changes_detected == 'true' && inputs.commit_strategy == 'pr'\n        env:\n          GH_TOKEN: \\${{ github.token }}\n        run: |\n          PR_BODY=\"This PR was automatically created by the ${prefix} sync workflow.\n\n          ## Changes\n          - Synced agent configuration from canonical repository\n\n          ---\n          *This is an automated PR. Review the changes and merge when ready.*\"\n\n          REVIEWERS_ARG=\"\"\n          if [ -n \"\\${{ inputs.reviewers }}\" ]; then\n            REVIEWERS_ARG=\"--reviewer \\${{ inputs.reviewers }}\"\n          fi\n\n          PR_URL=\\$(gh pr create \\\\\n            --title \"\\${{ inputs.pr_title }}\" \\\\\n            --body \"\\$PR_BODY\" \\\\\n            \\$REVIEWERS_ARG)\n\n          PR_NUMBER=\\$(gh pr view --json number -q .number)\n          echo \"pr_url=\\$PR_URL\" >> \\$GITHUB_OUTPUT\n          echo \"pr_number=\\$PR_NUMBER\" >> \\$GITHUB_OUTPUT\n          echo \"Created PR #\\$PR_NUMBER: \\$PR_URL\"\n\n      - name: Commit directly to branch\n        if: steps.check-changes.outputs.changes_detected == 'true' && inputs.commit_strategy == 'direct'\n        run: |\n          git add -A\n          git commit -m \"\\${{ inputs.commit_message }}\"\n          git push\n          echo \"Changes committed directly to \\$(git branch --show-current)\"\n`;\n}\n\n/**\n * Generates the check workflow file content.\n */\nfunction generateCheckWorkflow(repoFullName: string, prefix: string): string {\n  return `# ${prefix} File Integrity Check (Reusable)\n# This workflow is called by downstream repositories.\n#\n# Downstream repos will reference this workflow like:\n#   uses: ${repoFullName}/.github/workflows/check-reusable.yml@v1.0.0\n#\n# TOKEN: Requires a token with read access to the canonical repository.\n\nname: Check Reusable\n\non:\n  workflow_call:\n    secrets:\n      token:\n        description: 'GitHub token with read access to the canonical repository'\n        required: true\n\njobs:\n  check:\n    runs-on: ubuntu-latest\n    steps:\n      - name: Checkout\n        uses: actions/checkout@v4\n\n      - name: Setup Node.js\n        uses: actions/setup-node@v4\n        with:\n          node-version: '20'\n\n      - name: Install agent-conf CLI\n        run: npm install -g agent-conf\n\n      - name: Check file integrity\n        run: agent-conf check\n        env:\n          GITHUB_TOKEN: \\${{ secrets.token }}\n`;\n}\n\nexport async function initCanonicalRepoCommand(options: InitCanonicalRepoOptions): Promise<void> {\n  const logger = createLogger();\n\n  console.log();\n  prompts.intro(pc.bold(\"agent-conf init-canonical-repo\"));\n\n  // Determine target directory\n  const targetDir = options.dir ? path.resolve(options.dir) : process.cwd();\n  const dirName = path.basename(targetDir);\n  const cwd = process.cwd();\n\n  // Compute smart defaults for name and organization\n  // Check both target dir and cwd for git info\n  // If target dir exists and is at git root, use that\n  // Otherwise, if cwd is at git root and target is cwd or a new subdir, use cwd's git info\n  let isAtGitRoot = await isGitRoot(targetDir);\n  let gitProjectName = await getGitProjectName(targetDir);\n  let gitOrganization = await getGitOrganization(targetDir);\n\n  // If target dir doesn't have git info, try cwd (useful when creating new dir inside git repo)\n  if (!gitProjectName) {\n    const cwdIsGitRoot = await isGitRoot(cwd);\n    const cwdGitProjectName = await getGitProjectName(cwd);\n    const cwdGitOrganization = await getGitOrganization(cwd);\n\n    // If cwd is a git root and target is cwd, use cwd's info\n    if (cwdIsGitRoot && path.resolve(targetDir) === path.resolve(cwd)) {\n      isAtGitRoot = true;\n      gitProjectName = cwdGitProjectName;\n      gitOrganization = cwdGitOrganization;\n    } else if (cwdGitOrganization && !gitOrganization) {\n      // At least use the organization from cwd if available\n      gitOrganization = cwdGitOrganization;\n    }\n  }\n\n  // Determine the default name suggestion\n  let defaultName: string;\n  let nameHint: string;\n  if (isAtGitRoot && gitProjectName) {\n    defaultName = gitProjectName;\n    nameHint = \" (from current git project)\";\n  } else {\n    defaultName = dirName;\n    nameHint = \"\";\n  }\n\n  // Check if directory exists and has content\n  const dirExists = await directoryExists(targetDir);\n  if (dirExists) {\n    const configExists = await fileExists(path.join(targetDir, \"agent-conf.yaml\"));\n    if (configExists && !options.yes) {\n      const shouldContinue = await prompts.confirm({\n        message: \"This directory already has an agent-conf.yaml. Overwrite?\",\n        initialValue: false,\n      });\n\n      if (prompts.isCancel(shouldContinue) || !shouldContinue) {\n        prompts.cancel(\"Operation cancelled\");\n        process.exit(0);\n      }\n    }\n  }\n\n  // Gather options (interactive or from CLI)\n  let resolvedOptions: ResolvedOptions;\n\n  if (options.yes) {\n    // Non-interactive mode: use defaults or provided values\n    resolvedOptions = {\n      name: options.name ?? defaultName,\n      organization: options.org ?? gitOrganization,\n      targetDir,\n      markerPrefix: options.markerPrefix ?? \"agent-conf\",\n      includeExamples: options.includeExamples !== false,\n    };\n  } else {\n    // Interactive mode: prompt for values\n    const name = await prompts.text({\n      message: `Canonical repository name${nameHint}:`,\n      placeholder: defaultName,\n      defaultValue: options.name ?? defaultName,\n      validate: (value) => {\n        if (!value.trim()) return \"Name is required\";\n        if (!/^[a-z0-9-]+$/.test(value)) return \"Name must be lowercase alphanumeric with hyphens\";\n        return undefined;\n      },\n    });\n\n    if (prompts.isCancel(name)) {\n      prompts.cancel(\"Operation cancelled\");\n      process.exit(0);\n    }\n\n    // Determine organization suggestion\n    const orgDefault = options.org ?? gitOrganization;\n    const orgHint = gitOrganization && !options.org ? \" (from git)\" : \"\";\n\n    const organization = await prompts.text({\n      message: `Organization name${orgHint} (optional):`,\n      placeholder: orgDefault ?? \"ACME Corp\",\n      ...(orgDefault ? { defaultValue: orgDefault } : {}),\n    });\n\n    if (prompts.isCancel(organization)) {\n      prompts.cancel(\"Operation cancelled\");\n      process.exit(0);\n    }\n\n    const markerPrefix = await prompts.text({\n      message: \"Marker prefix for managed content:\",\n      placeholder: \"agent-conf\",\n      defaultValue: options.markerPrefix ?? \"agent-conf\",\n      validate: (value) => {\n        if (!value.trim()) return \"Prefix is required\";\n        if (!/^[a-z0-9-]+$/.test(value))\n          return \"Prefix must be lowercase alphanumeric with hyphens\";\n        return undefined;\n      },\n    });\n\n    if (prompts.isCancel(markerPrefix)) {\n      prompts.cancel(\"Operation cancelled\");\n      process.exit(0);\n    }\n\n    const includeExamples = await prompts.confirm({\n      message: \"Include example skill?\",\n      initialValue: options.includeExamples !== false,\n    });\n\n    if (prompts.isCancel(includeExamples)) {\n      prompts.cancel(\"Operation cancelled\");\n      process.exit(0);\n    }\n\n    resolvedOptions = {\n      name: name as string,\n      organization: (organization as string) || undefined,\n      targetDir,\n      markerPrefix: markerPrefix as string,\n      includeExamples: includeExamples as boolean,\n    };\n  }\n\n  // Create directory structure\n  const spinner = logger.spinner(\"Creating canonical repository structure...\");\n  spinner.start();\n\n  try {\n    // Ensure target directory exists\n    await ensureDir(resolvedOptions.targetDir);\n\n    // Create directories\n    const instructionsDir = path.join(resolvedOptions.targetDir, \"instructions\");\n    const skillsDir = path.join(resolvedOptions.targetDir, \"skills\");\n    const workflowsDir = path.join(resolvedOptions.targetDir, \".github\", \"workflows\");\n\n    await ensureDir(instructionsDir);\n    await ensureDir(skillsDir);\n    await ensureDir(workflowsDir);\n\n    // Write agent-conf.yaml\n    const configPath = path.join(resolvedOptions.targetDir, \"agent-conf.yaml\");\n    await fs.writeFile(configPath, generateConfigYaml(resolvedOptions), \"utf-8\");\n\n    // Write AGENTS.md\n    const agentsMdPath = path.join(instructionsDir, \"AGENTS.md\");\n    await fs.writeFile(agentsMdPath, generateAgentsMd(resolvedOptions), \"utf-8\");\n\n    // Write example skill if requested\n    if (resolvedOptions.includeExamples) {\n      const exampleSkillDir = path.join(skillsDir, \"example-skill\");\n      const referencesDir = path.join(exampleSkillDir, \"references\");\n      await ensureDir(referencesDir);\n\n      const skillMdPath = path.join(exampleSkillDir, \"SKILL.md\");\n      await fs.writeFile(skillMdPath, generateExampleSkillMd(), \"utf-8\");\n\n      const gitkeepPath = path.join(referencesDir, \".gitkeep\");\n      await fs.writeFile(gitkeepPath, \"\", \"utf-8\");\n    }\n\n    // Write workflow files\n    const syncWorkflowPath = path.join(workflowsDir, \"sync-reusable.yml\");\n    const checkWorkflowPath = path.join(workflowsDir, \"check-reusable.yml\");\n\n    // Build repo full name for workflow references (org/name or just name if no org)\n    const repoFullName = resolvedOptions.organization\n      ? `${resolvedOptions.organization}/${resolvedOptions.name}`\n      : resolvedOptions.name;\n\n    await fs.writeFile(\n      syncWorkflowPath,\n      generateSyncWorkflow(repoFullName, resolvedOptions.markerPrefix),\n      \"utf-8\",\n    );\n    await fs.writeFile(\n      checkWorkflowPath,\n      generateCheckWorkflow(repoFullName, resolvedOptions.markerPrefix),\n      \"utf-8\",\n    );\n\n    spinner.succeed(\"Canonical repository structure created\");\n\n    // Summary\n    console.log();\n    console.log(pc.bold(\"Created:\"));\n    console.log(`  ${pc.green(\"+\")} ${formatPath(configPath)}`);\n    console.log(`  ${pc.green(\"+\")} ${formatPath(agentsMdPath)}`);\n    if (resolvedOptions.includeExamples) {\n      console.log(\n        `  ${pc.green(\"+\")} ${formatPath(path.join(skillsDir, \"example-skill/SKILL.md\"))}`,\n      );\n    }\n    console.log(`  ${pc.green(\"+\")} ${formatPath(syncWorkflowPath)}`);\n    console.log(`  ${pc.green(\"+\")} ${formatPath(checkWorkflowPath)}`);\n\n    console.log();\n    console.log(pc.dim(`Name: ${resolvedOptions.name}`));\n    if (resolvedOptions.organization) {\n      console.log(pc.dim(`Organization: ${resolvedOptions.organization}`));\n    }\n    console.log(pc.dim(`Marker prefix: ${resolvedOptions.markerPrefix}`));\n\n    console.log();\n    console.log(pc.bold(\"Next steps:\"));\n    console.log(`  1. Edit ${pc.cyan(\"instructions/AGENTS.md\")} with your engineering standards`);\n    console.log(`  2. Add skills to ${pc.cyan(\"skills/\")} directory`);\n    console.log(`  3. Commit and push to create your canonical repository`);\n    console.log();\n    console.log(\n      pc.dim(\n        `See https://github.com/julian-pani/agent-conf/blob/master/cli/docs/CANONICAL_REPOSITORY_SETUP.md for detailed setup instructions.`,\n      ),\n    );\n\n    prompts.outro(pc.green(\"Done!\"));\n  } catch (error) {\n    spinner.fail(\"Failed to create canonical repository\");\n    logger.error(error instanceof Error ? error.message : String(error));\n    process.exit(1);\n  }\n}\n","import * as path from \"node:path\";\nimport pc from \"picocolors\";\nimport { checkAllManagedFiles } from \"../core/skill-metadata.js\";\nimport { formatSourceString } from \"../core/source.js\";\nimport { getSyncStatus } from \"../core/sync.js\";\nimport { formatPath } from \"../utils/logger.js\";\n\nexport interface StatusOptions {\n  check?: boolean;\n}\n\nexport async function statusCommand(options: StatusOptions = {}): Promise<void> {\n  const targetDir = process.cwd();\n  const status = await getSyncStatus(targetDir);\n\n  console.log();\n  console.log(pc.bold(\"agent-conf sync status\"));\n  console.log();\n\n  if (!status.hasSynced) {\n    console.log(pc.yellow(\"Not synced\"));\n    console.log();\n    console.log(pc.dim(\"Run `agent-conf init` to sync engineering standards to this repository.\"));\n    console.log();\n    return;\n  }\n\n  const lockfile = status.lockfile!;\n\n  console.log(`${pc.green(\"Synced\")}`);\n  console.log();\n\n  // Source info\n  console.log(pc.bold(\"Source:\"));\n  console.log(`  ${formatSourceString(lockfile.source)}`);\n  console.log();\n\n  // Sync timestamp\n  console.log(pc.bold(\"Last synced:\"));\n  const syncedAt = new Date(lockfile.synced_at);\n  console.log(`  ${syncedAt.toLocaleString()}`);\n  console.log();\n\n  // Content\n  console.log(pc.bold(\"Content:\"));\n  console.log(`  AGENTS.md: ${status.agentsMdExists ? pc.green(\"present\") : pc.red(\"missing\")}`);\n  console.log(`  Skills: ${lockfile.content.skills.length} synced`);\n  if (lockfile.content.skills.length > 0) {\n    for (const skill of lockfile.content.skills) {\n      console.log(`    - ${skill}`);\n    }\n  }\n  console.log();\n\n  // Check for modified files if --check flag is provided\n  if (options.check) {\n    const targets = lockfile.content.targets ?? [\"claude\"];\n    const allFiles = await checkAllManagedFiles(targetDir, targets);\n    const modifiedFiles = allFiles.filter((f) => f.hasChanges);\n\n    console.log(pc.bold(\"File integrity:\"));\n    if (modifiedFiles.length === 0) {\n      console.log(`  ${pc.green(\"✓\")} All managed files are unchanged`);\n    } else {\n      console.log(`  ${pc.yellow(\"!\")} ${modifiedFiles.length} file(s) manually modified:`);\n      for (const file of modifiedFiles) {\n        const label = file.type === \"agents\" ? \"(global block)\" : \"\";\n        console.log(`    ${pc.yellow(\"~\")} ${file.path} ${pc.dim(label)}`);\n      }\n      console.log();\n      console.log(pc.dim(\"  These files will be overwritten on next sync. To preserve changes,\"));\n      console.log(pc.dim(\"  copy them elsewhere before running `agent-conf sync`.\"));\n    }\n    console.log();\n  }\n\n  // Lockfile location\n  const lockfilePath = formatPath(path.join(targetDir, \".agent-conf\", \"agent-conf.lock\"));\n  console.log(pc.dim(`Lock file: ${lockfilePath}`));\n  console.log(pc.dim(`CLI version: ${lockfile.cli_version}`));\n  console.log();\n}\n","import * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { getSyncStatus } from \"../core/sync.js\";\nimport { compareVersions } from \"../core/version.js\";\nimport { createLogger } from \"../utils/logger.js\";\nimport {\n  checkModifiedFilesBeforeSync,\n  parseAndValidateTargets,\n  performSync,\n  promptMergeOrOverride,\n  resolveSource,\n  resolveTargetDirectory,\n  resolveVersion,\n  type SharedSyncOptions,\n} from \"./shared.js\";\n\nexport interface SyncOptions extends SharedSyncOptions {}\n\nexport async function syncCommand(options: SyncOptions): Promise<void> {\n  const logger = createLogger();\n\n  console.log();\n  prompts.intro(pc.bold(\"agent-conf sync\"));\n\n  // Validate mutually exclusive flags\n  if (options.pinned && options.ref) {\n    logger.error(\"Cannot use --pinned with --ref. Choose one.\");\n    process.exit(1);\n  }\n  if (options.pinned && options.local !== undefined) {\n    logger.error(\"Cannot use --pinned with --local.\");\n    process.exit(1);\n  }\n\n  // Resolve target directory to git root\n  const targetDir = await resolveTargetDirectory();\n\n  // Parse targets\n  const targets = await parseAndValidateTargets(options.target);\n\n  // Check current status (informational only, no confirmation prompt)\n  const status = await getSyncStatus(targetDir);\n\n  if (!status.hasSynced) {\n    logger.warn(\n      \"This repository has not been synced yet. Consider running 'agent-conf init' first.\",\n    );\n  }\n\n  // For sync command, try to get source from:\n  // 1. --source flag (highest priority)\n  // 2. Lockfile's recorded source\n  let sourceRepo = options.source;\n  if (!sourceRepo && status.lockfile?.source.type === \"github\") {\n    sourceRepo = status.lockfile.source.repository;\n  }\n\n  // Resolve version (fetches latest by default, unless --pinned or --ref)\n  const resolvedVersion = await resolveVersion(options, status, \"sync\", sourceRepo);\n\n  // Check if already up to date (when fetching latest, not --pinned or --ref)\n  if (!options.pinned && !options.ref && !options.local && status.lockfile?.pinned_version) {\n    const currentVersion = status.lockfile.pinned_version;\n\n    if (resolvedVersion.version) {\n      const comparison = compareVersions(currentVersion, resolvedVersion.version);\n\n      // Display version info\n      console.log();\n      console.log(`Canonical source: ${pc.cyan(sourceRepo)}`);\n      console.log(`Latest release: ${pc.cyan(resolvedVersion.version)}`);\n      console.log(`Pinned version: ${pc.cyan(currentVersion)}`);\n\n      if (comparison >= 0) {\n        // Current version is equal or newer\n        console.log(`  ${pc.green(\"✓\")} Up to date`);\n        console.log();\n        prompts.outro(pc.green(\"Already up to date!\"));\n        return;\n      }\n\n      // Update available\n      console.log(\n        `  ${pc.yellow(\"→\")} Update available: ${currentVersion} → ${resolvedVersion.version}`,\n      );\n      console.log();\n\n      // Confirm update\n      if (!options.yes) {\n        const shouldUpdate = await prompts.confirm({\n          message: \"Proceed with update?\",\n          initialValue: true,\n        });\n\n        if (prompts.isCancel(shouldUpdate) || !shouldUpdate) {\n          prompts.cancel(\"Sync cancelled\");\n          process.exit(0);\n        }\n      }\n    }\n  }\n\n  // If --ref was specified, inform user about version change\n  if (options.ref && status.lockfile?.pinned_version) {\n    const currentVersion = status.lockfile.pinned_version;\n    if (resolvedVersion.version && currentVersion !== resolvedVersion.version) {\n      logger.info(`Updating version: ${currentVersion} → ${resolvedVersion.version}`);\n    }\n  }\n\n  // Pass the resolved source to options for resolveSource\n  const optionsWithSource: SyncOptions = sourceRepo ? { ...options, source: sourceRepo } : options;\n\n  // Resolve source using the determined version\n  const { resolvedSource, tempDir, repository } = await resolveSource(\n    optionsWithSource,\n    resolvedVersion,\n  );\n\n  // Determine merge behavior\n  const shouldOverride = await promptMergeOrOverride(status, options, tempDir);\n\n  // Check for modified skill files and warn\n  await checkModifiedFilesBeforeSync(targetDir, targets, options, tempDir);\n\n  // Perform sync (includes workflow files for release versions)\n  await performSync({\n    targetDir,\n    resolvedSource,\n    resolvedVersion,\n    shouldOverride,\n    targets,\n    context: {\n      commandName: \"sync\",\n      status,\n    },\n    tempDir,\n    yes: options.yes,\n    sourceRepo: repository,\n  });\n}\n","import { execSync } from \"node:child_process\";\nimport * as prompts from \"@clack/prompts\";\nimport pc from \"picocolors\";\nimport { getCliVersion } from \"../core/lockfile.js\";\nimport { compareVersions } from \"../core/version.js\";\nimport { createLogger } from \"../utils/logger.js\";\n\nconst NPM_PACKAGE_NAME = \"agent-conf\";\n\nexport interface UpgradeCliOptions {\n  yes?: boolean;\n}\n\n/**\n * Fetches the latest version from the npm registry.\n */\nasync function getLatestNpmVersion(): Promise<string> {\n  const response = await fetch(`https://registry.npmjs.org/${NPM_PACKAGE_NAME}/latest`);\n\n  if (!response.ok) {\n    throw new Error(`Failed to fetch package info: ${response.statusText}`);\n  }\n\n  const data = (await response.json()) as { version: string };\n  return data.version;\n}\n\nexport async function upgradeCliCommand(options: UpgradeCliOptions): Promise<void> {\n  const logger = createLogger();\n  const currentVersion = getCliVersion();\n\n  console.log();\n  prompts.intro(pc.bold(\"agent-conf upgrade-cli\"));\n\n  // Check for updates\n  const spinner = logger.spinner(\"Checking for CLI updates...\");\n  spinner.start();\n\n  let latestVersion: string;\n  try {\n    latestVersion = await getLatestNpmVersion();\n    spinner.stop();\n  } catch (error) {\n    spinner.fail(\"Failed to check for CLI updates\");\n    logger.error(error instanceof Error ? error.message : String(error));\n    process.exit(1);\n  }\n\n  // Display version info\n  console.log();\n  console.log(`Current version: ${pc.cyan(currentVersion)}`);\n  console.log(`Latest version:  ${pc.cyan(latestVersion)}`);\n\n  // Check if update is needed\n  const needsUpdate = compareVersions(currentVersion, latestVersion) < 0;\n\n  if (!needsUpdate) {\n    console.log();\n    prompts.outro(pc.green(\"CLI is already up to date!\"));\n    return;\n  }\n\n  console.log();\n  console.log(`${pc.yellow(\"→\")} Update available: ${currentVersion} → ${latestVersion}`);\n  console.log();\n\n  // Confirm update\n  if (!options.yes) {\n    const shouldUpdate = await prompts.confirm({\n      message: \"Proceed with CLI upgrade?\",\n      initialValue: true,\n    });\n\n    if (prompts.isCancel(shouldUpdate) || !shouldUpdate) {\n      prompts.cancel(\"Upgrade cancelled\");\n      process.exit(0);\n    }\n  }\n\n  // Perform upgrade\n  const installSpinner = logger.spinner(\"Upgrading CLI...\");\n  installSpinner.start();\n\n  try {\n    execSync(`npm install -g ${NPM_PACKAGE_NAME}@latest`, {\n      stdio: \"pipe\",\n    });\n    installSpinner.succeed(\"CLI upgraded\");\n\n    console.log();\n    prompts.outro(pc.green(`CLI upgraded to ${latestVersion}!`));\n  } catch (error) {\n    installSpinner.fail(\"Upgrade failed\");\n    logger.error(error instanceof Error ? error.message : String(error));\n    logger.info(`\\nYou can try manually: npm install -g ${NPM_PACKAGE_NAME}@latest`);\n    process.exit(1);\n  }\n}\n","import { createCli } from \"./cli.js\";\n\nconst cli = 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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agent-conf",
-  "version": "2.0.1",
+  "version": "2.0.2",
   "description": "CLI utility to sync AI agent configurations across repositories",
   "author": "Julian Pani",
   "type": "module",