agent-bios 0.19.0 → 0.19.2

package/compose/instructions_install.py

@@ -0,0 +1,1866 @@
+#!/usr/bin/env python3
+"""Private instructions installation and explicit legacy migration.
+
+This command owns package-at-rest installation.  It deliberately has no host
+activation path: installed instructions are stored and verifiable, while a launcher
+activation creates the per-session snapshot and pin.
+"""
+from __future__ import annotations
+
+import argparse
+import base64
+import contextlib
+import hashlib
+import importlib
+import importlib.util
+import json
+import os
+from pathlib import Path, PurePosixPath
+import re
+import shlex
+import shutil
+import sys
+import tempfile
+import time
+import tomllib
+import uuid
+from typing import Any
+
+if __name__ == "__main__":
+    sys.dont_write_bytecode = True
+
+from instructions_transaction import (
+    environment_value,
+    _valid_release,
+    TransactionError,
+    guard_pending,
+    operation_scope,
+    operation_scope_active,
+    pending_status,
+    reject_symlink_ancestors,
+    transaction_lock,
+)
+
+
+SCHEMA_VERSION = 1
+PRIVATE_RECORD = "private-install.json"
+CENTRAL_START = "<!-- agent-bios:central:start -->"
+CENTRAL_END = "<!-- agent-bios:central:end -->"
+PERSONAL_START = "<!-- agent-bios:personal-learnings:start -->"
+PERSONAL_END = "<!-- agent-bios:personal-learnings:end -->"
+CLAUDE_IMPORTS = frozenset(("@central/bundle.md", "@personal/learnings.md"))
+ZSH_HOOK = '[ -r "$HOME/.config/agent-launch/shell.zsh" ] && source "$HOME/.config/agent-launch/shell.zsh"'
+LEARNING_ID = re.compile(r"^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$")
+
+
+class InstallError(RuntimeError):
+    pass
+
+
+def _serialized(method):
+    """Keep installer metadata and its owned paths one transaction at a time."""
+    def wrapped(self, *args, **kwargs):
+        name = method.__name__
+        dry = bool(kwargs.get("dry_run", False))
+        if name == "install" and len(args) >= 2:
+            dry = dry or bool(args[1])
+        elif name in {"uninstall"} and args:
+            dry = dry or bool(args[0])
+        apply = bool(args[0]) if args and name in {"migrate", "reset"} else bool(kwargs.get("apply", False))
+        if name == "status" or dry or (name in {"migrate", "reset"} and not apply):
+            return method(self, *args, **kwargs)
+        with self._installer_lock():
+            if name in {"install", "uninstall", "reset"} and not operation_scope_active(self.state_root):
+                if any(row["kind"] == "migrate" for row in pending_status(self.state_root)["transactions"]):
+                    raise InstallError("pending migration requires agent-bios migrate --apply --yes before other writes")
+            return method(self, *args, **kwargs)
+    return wrapped
+
+
+def _sha256(path: Path) -> str:
+    digest = hashlib.sha256()
+    with path.open("rb") as source:
+        for chunk in iter(lambda: source.read(1024 * 1024), b""):
+            digest.update(chunk)
+    return digest.hexdigest()
+
+
+def _canonical(value: Any) -> bytes:
+    return json.dumps(value, ensure_ascii=False, sort_keys=True, separators=(",", ":")).encode("utf-8")
+
+
+def _atomic_bytes(path: Path, data: bytes, mode: int | None = None) -> None:
+    path.parent.mkdir(parents=True, exist_ok=True, mode=0o700)
+    if path.is_symlink():
+        raise InstallError(f"refusing symlink output: {path}")
+    descriptor, raw = tempfile.mkstemp(prefix=f".{path.name}.", dir=path.parent)
+    temporary = Path(raw)
+    try:
+        with os.fdopen(descriptor, "wb") as target:
+            target.write(data)
+            target.flush()
+            os.fsync(target.fileno())
+        if mode is not None:
+            temporary.chmod(mode)
+        elif path.exists():
+            temporary.chmod(path.stat().st_mode & 0o777)
+        os.replace(temporary, path)
+    finally:
+        temporary.unlink(missing_ok=True)
+
+
+def _atomic_json(path: Path, value: Any) -> None:
+    _atomic_bytes(path, _canonical(value) + b"\n", 0o600)
+
+
+def _read_json(path: Path) -> dict[str, Any]:
+    if path.is_symlink() or not path.is_file():
+        raise InstallError(f"missing or unsafe JSON record: {path}")
+    try:
+        data = json.loads(path.read_text(encoding="utf-8"))
+    except (OSError, ValueError) as exc:
+        raise InstallError(f"cannot read JSON record {path}: {exc}") from exc
+    if not isinstance(data, dict):
+        raise InstallError(f"JSON record must be an object: {path}")
+    return data
+
+
+def _relative(value: str, label: str) -> str:
+    if not isinstance(value, str) or not value:
+        raise InstallError(f"{label} must be a non-empty relative path")
+    path = PurePosixPath(value.rstrip("/"))
+    if path.is_absolute() or not path.parts or any(part in {"", ".", ".."} for part in path.parts):
+        raise InstallError(f"unsafe {label}: {value!r}")
+    return path.as_posix()
+
+
+def _inside(path: Path, root: Path) -> bool:
+    try:
+        path.absolute().relative_to(root.absolute())
+        return True
+    except ValueError:
+        return False
+
+
+def _active_import_lines(body: str) -> list[int]:
+    """Line numbers of real import directives, excluding fenced examples."""
+    result: list[int] = []
+    fenced = False
+    for index, line in enumerate(body.splitlines(keepends=True)):
+        stripped = line.strip()
+        if stripped.startswith(("```", "~~~")):
+            fenced = not fenced
+            continue
+        if not fenced and stripped in CLAUDE_IMPORTS:
+            result.append(index)
+    return result
+
+
+def _remove_claude_imports(body: str) -> tuple[str, list[str]]:
+    lines = body.splitlines(keepends=True)
+    indexes = set(_active_import_lines(body))
+    removed = [lines[index].strip() for index in sorted(indexes)]
+    return "".join(line for index, line in enumerate(lines) if index not in indexes), removed
+
+
+def _remove_spans(body: str) -> tuple[str | None, list[str]]:
+    """Strip exact, non-overlapping managed marker spans or report ambiguity."""
+    spans = ((CENTRAL_START, CENTRAL_END, "central"), (PERSONAL_START, PERSONAL_END, "personal-learnings"))
+    found: list[tuple[int, int, str]] = []
+    for start, end, label in spans:
+        starts = [index for index in range(len(body)) if body.startswith(start, index)]
+        ends = [index for index in range(len(body)) if body.startswith(end, index)]
+        if not starts and not ends:
+            continue
+        if len(starts) != 1 or len(ends) != 1 or starts[0] >= ends[0]:
+            return None, [f"malformed {label} marker span"]
+        found.append((starts[0], ends[0] + len(end), label))
+    if len(found) == 2 and not (found[0][1] <= found[1][0] or found[1][1] <= found[0][0]):
+        return None, ["overlapping managed marker spans"]
+    text = body
+    removed: list[str] = []
+    for start, end, label in sorted(found, reverse=True):
+        text = text[:start] + text[end:]
+        removed.append(label)
+    return text.lstrip("\n"), list(reversed(removed))
+
+
+def _strip_codex_config_additions(body: str) -> tuple[str | None, bool]:
+    """Remove only the exact legacy config block and tagged feature line."""
+    begin, end, tag = "# >>> agent-bios additions >>>", "# <<< agent-bios additions <<<", "# agent-bios"
+    starts = body.count(begin)
+    ends = body.count(end)
+    if starts != ends or starts > 1:
+        return None, False
+    skipping = False
+    changed = False
+    lines: list[str] = []
+    for line in body.splitlines(keepends=True):
+        stripped = line.strip()
+        if stripped == begin:
+            skipping, changed = True, True
+            continue
+        if stripped == end:
+            skipping = False
+            continue
+        if skipping:
+            continue
+        if stripped.endswith(tag) and "multi_agent" in stripped:
+            changed = True
+            continue
+        lines.append(line)
+    result = "".join(lines)
+    if changed:
+        try:
+            tomllib.loads(result)
+        except tomllib.TOMLDecodeError:
+            return None, False
+    return result, changed
+
+
+class InstructionsInstaller:
+    """Private install state plus carefully scoped legacy cleanup."""
+
+    def __init__(self, repo: Path, environ: dict[str, str] | None = None):
+        self.repo = Path(repo).resolve()
+        self.env = dict(os.environ if environ is None else environ)
+        home = Path(self.env.get("HOME", str(Path.home()))).expanduser()
+        self.state_root = Path(self.env.get("AGENT_BIOS_STATE_DIR", str(home / ".local/share/agent-bios"))).expanduser()
+        self.user_root = Path(environment_value(self.env, "AGENT_BIOS_INSTRUCTIONS_DIR", "AGENT_BIOS_CORPUS_DIR", str(home / ".config/agent-bios/corpus"))).expanduser()
+        self.claude_root = Path(self.env.get("CLAUDE_CONFIG_DIR", str(home / ".claude"))).expanduser()
+        self.codex_root = Path(self.env.get("CODEX_HOME", str(home / ".codex"))).expanduser()
+        self.zdotdir = Path(self.env.get("ZDOTDIR", str(home))).expanduser()
+        self.launch_root = home / ".config" / "agent-launch"
+        self.bin_root = home / ".local" / "bin"
+        self._installer_lock_depth = 0
+
+    @property
+    def runtime(self) -> Path:
+        return self.state_root / "runtime"
+
+    @property
+    def record_path(self) -> Path:
+        return self.runtime / PRIVATE_RECORD
+
+    @contextlib.contextmanager
+    def _installer_lock(self):
+        """Use the store's lock; lock ordering cannot diverge by caller."""
+        try:
+            with transaction_lock(self.state_root):
+                yield
+        except TransactionError as exc:
+            raise InstallError(str(exc)) from exc
+
+    def _package_manifest(self) -> dict[str, Any]:
+        return _read_json(self.repo / "package.json")
+
+    def _package_files(self) -> list[str]:
+        manifest = self._package_manifest()
+        listed = manifest.get("files")
+        if not isinstance(listed, list) or not listed:
+            raise InstallError("package.json files must declare the private runtime payload")
+        paths: set[str] = {"package.json"}  # npm includes this manifest even when files[] omits it.
+        prohibited = ("gates/", "design/", "benchmarks/", "research/", "packages/", "session-distill/")
+        for raw in listed:
+            relative = _relative(raw, "package files entry")
+            if relative.startswith(prohibited):
+                raise InstallError(f"author-only path is not a private runtime payload: {relative}")
+            source = self.repo / relative
+            # npm's prepack stamps this author-side provenance receipt.  A
+            # checkout after postpack legitimately lacks it and no private
+            # runtime path consumes it, so it is not an installation blocker.
+            if relative == "provenance.json" and not source.exists():
+                continue
+            if source.is_symlink() or not source.exists():
+                raise InstallError(f"declared package file is missing or symlinked: {relative}")
+            if source.is_file():
+                paths.add(relative)
+                continue
+            if not source.is_dir():
+                raise InstallError(f"declared package entry is not file or directory: {relative}")
+            for child in sorted(source.rglob("*")):
+                if child.is_symlink():
+                    raise InstallError(f"package payload contains symlink: {child}")
+                if child.is_file():
+                    child_relative = child.relative_to(self.repo).as_posix()
+                    if "/test_" in child_relative or child_relative.startswith("tests/"):
+                        raise InstallError(f"test file is not a runtime payload: {child_relative}")
+                    paths.add(child_relative)
+        return sorted(paths)
+
+    def _release_digest(self, files: list[str]) -> str:
+        digest = hashlib.sha256()
+        for relative in files:
+            source = self.repo / relative
+            digest.update(relative.encode("utf-8") + b"\0" + source.read_bytes() + b"\0")
+        return digest.hexdigest()
+
+    def _copy_release(self, files: list[str], dry_run: bool) -> tuple[Path, list[dict[str, str]], str]:
+        digest = self._release_digest(files)
+        release = self.runtime / "releases" / digest
+        entries = [{"path": relative, "sha256": _sha256(self.repo / relative)} for relative in files]
+        if dry_run:
+            return release, entries, digest
+        if release.exists():
+            if release.is_symlink() or not release.is_dir():
+                raise InstallError(f"immutable release path is unsafe: {release}")
+            self._verify_release(release, entries)
+            return release, entries, digest
+        release.parent.mkdir(parents=True, exist_ok=True, mode=0o700)
+        staging = Path(tempfile.mkdtemp(prefix=f".{digest}.", dir=release.parent))
+        try:
+            for entry in entries:
+                source = self.repo / entry["path"]
+                target = staging / entry["path"]
+                target.parent.mkdir(parents=True, exist_ok=True)
+                shutil.copy2(source, target)
+            self._verify_release(staging, entries)
+            os.replace(staging, release)
+        except BaseException:
+            shutil.rmtree(staging, ignore_errors=True)
+            raise
+        return release, entries, digest
+
+    def _verify_release(self, release: Path, entries: list[dict[str, str]]) -> None:
+        for entry in entries:
+            target = release / _relative(entry.get("path", ""), "installed file")
+            if target.is_symlink() or not target.is_file() or _sha256(target) != entry.get("sha256"):
+                raise InstallError(f"private package release drifted: {target}")
+
+    def _private_module(self, package_root: Path, stem: str):
+        # An old store must participate in this manager's reentrant transaction,
+        # not load a second copy of the old module-local lock/operation scope.
+        import instructions_transaction
+        sys.modules["corpus_transaction"] = instructions_transaction
+        compose = str(package_root / "compose")
+        if compose not in sys.path:
+            sys.path.insert(0, compose)
+        path = package_root / "compose" / f"{stem}.py"
+        if not path.exists() and stem.startswith("instructions"):
+            path = package_root / "compose" / f"{stem.replace('instructions', 'corpus', 1)}.py"
+        if not path.is_file() or path.is_symlink():
+            raise InstallError(f"private package lacks compose/{stem}.py")
+        name = f"agent_bios_private_{stem}_{hashlib.sha256(str(package_root).encode()).hexdigest()[:12]}"
+        spec = importlib.util.spec_from_file_location(name, path)
+        if spec is None or spec.loader is None:
+            raise InstallError(f"cannot load private {stem}")
+        module = importlib.util.module_from_spec(spec)
+        sys.modules[name] = module
+        spec.loader.exec_module(module)
+        return module
+
+    def _store(self, package_root: Path):
+        module = self._private_module(package_root, "instructions_store")
+        store_type = getattr(module, "InstructionsStore", None) or module.CorpusStore
+        store = store_type(package_root, self.state_root, self.user_root)
+        # InstructionsStore delegates compile/load to a module name for normal package
+        # execution. Bind this instance to the release's exact catalog so a
+        # long-lived manager cannot retain an older release through sys.modules.
+        catalog = self._private_module(package_root, "instructions_catalog")
+        store._catalog_module = lambda: catalog
+        return store
+
+    def _catalog(self, package_root: Path) -> dict[str, Any]:
+        """Load the catalog from the immutable release being verified."""
+        module = self._private_module(package_root, "instructions_catalog")
+        return module.load_catalog(package_root)
+
+    def _normalized_domains(self, raw: str | None) -> list[str]:
+        if raw is None or raw.strip() in {"", "all"}:
+            return ["all"]
+        catalog_path = self.repo / "compose" / "domains.json"
+        manifest = _read_json(catalog_path)
+        package_id = manifest.get("package_id", "@agent-bios/core")
+        known = set((manifest.get("domains") or {}).keys())
+        names = [value.strip() for value in raw.split(",") if value.strip()]
+        if names == ["none"]:
+            return []
+        if "none" in names:
+            raise InstallError("--domains none must be the only selection value")
+        unknown = sorted(set(names) - known)
+        if unknown:
+            raise InstallError(f"unknown domains: {', '.join(unknown)}")
+        return [f"{package_id}/{name}" for name in sorted(set(names))]
+
+    def _write_launcher_status(self, package_root: Path, selection: list[str]) -> None:
+        """Keep the legacy launcher panel readable without claiming activation."""
+        manifest = _read_json(package_root / "compose" / "domains.json")
+        available = sorted((manifest.get("domains") or {}).keys())
+        package_id = manifest.get("package_id", "@agent-bios/core")
+        applied = available if "all" in selection or package_id in selection else [
+            name for name in available if f"{package_id}/{name}" in selection]
+        _atomic_json(self.state_root / "corpus-status.json", {
+            "repo": str(package_root), "current_version": None, "latest_version": None,
+            "rolled_back_to": None, "versions": None, "summary": None,
+            "domains": {"available": available, "applied": applied}, "last_apply": None,
+            "deployed_corpus": None, "generated": int(time.time()),
+            "mode": "private-session-scoped",
+        })
+
+    def _launcher_status_bytes(self, package_root: Path, selection: list[str], generated: int | None = None) -> bytes:
+        """The status projection is part of the same publication as its record."""
+        manifest = _read_json(package_root / "compose" / "domains.json")
+        available = sorted((manifest.get("domains") or {}).keys())
+        package_id = manifest.get("package_id", "@agent-bios/core")
+        applied = available if "all" in selection or package_id in selection else [
+            name for name in available if f"{package_id}/{name}" in selection]
+        return _canonical({
+            "repo": str(package_root), "current_version": None, "latest_version": None,
+            "rolled_back_to": None, "versions": None, "summary": None,
+            "domains": {"available": available, "applied": applied}, "last_apply": None,
+            "deployed_corpus": None, "generated": int(time.time()) if generated is None else generated,
+            "mode": "private-session-scoped",
+        }) + b"\n"
+
+    @staticmethod
+    def _safe_transaction_target(path: Path) -> None:
+        try:
+            reject_symlink_ancestors(path)
+        except TransactionError as exc:
+            raise InstallError(str(exc)) from exc
+
+    @staticmethod
+    def _file_version(path: Path, *, allow_bytes: bool = True) -> dict[str, Any]:
+        """A journaled exact-state predicate; secrets use hash-only predicates."""
+        InstructionsInstaller._safe_transaction_target(path)
+        if not path.exists():
+            return {"exists": False}
+        if not path.is_file():
+            raise InstallError(f"transaction target is not a regular file: {path}")
+        data = path.read_bytes()
+        result: dict[str, Any] = {"exists": True, "sha256": hashlib.sha256(data).hexdigest()}
+        if allow_bytes:
+            result["bytes_b64"] = base64.b64encode(data).decode("ascii")
+        return result
+
+    @staticmethod
+    def _planned_version(data: bytes | None) -> dict[str, Any]:
+        if data is None:
+            return {"exists": False}
+        return {"exists": True, "sha256": hashlib.sha256(data).hexdigest(),
+                "bytes_b64": base64.b64encode(data).decode("ascii")}
+
+    @staticmethod
+    def _matches_version(path: Path, version: dict[str, Any]) -> bool:
+        try:
+            InstructionsInstaller._safe_transaction_target(path)
+        except InstallError:
+            return False
+        if not version.get("exists"):
+            return not path.exists()
+        return path.is_file() and _sha256(path) == version.get("sha256")
+
+    def _transaction_path(self, transaction_id: str) -> Path:
+        if not re.fullmatch(r"[A-Za-z0-9._-]+", transaction_id):
+            raise InstallError("unsafe transaction id")
+        # Store keeps its source-only candidate at ``transactions/<id>``.
+        # The installer must never overwrite that source journal.
+        return self.runtime / "installer-transactions" / transaction_id / "journal.json"
+
+    def _journal_write(self, journal: Path, value: dict[str, Any]) -> None:
+        _atomic_json(journal, value)
+
+    def _write_planned(self, path: Path, version: dict[str, Any], mode: int) -> None:
+        self._safe_transaction_target(path)
+        encoded = version.get("bytes_b64")
+        if not isinstance(encoded, str):
+            if not version.get("exists"):
+                path.unlink(missing_ok=True)
+                return
+            raise InstallError(f"journal has no replay bytes for {path}")
+        _atomic_bytes(path, base64.b64decode(encoded.encode("ascii"), validate=True), mode)
+
+    def _assert_preflight_paths(self, paths: list[dict[str, Any]]) -> None:
+        for entry in paths:
+            self._safe_transaction_target(Path(entry["path"]))
+        conflicts = [entry["path"] for entry in paths
+                     if not self._matches_version(Path(entry["path"]), entry["before"])
+                     and not self._matches_version(Path(entry["path"]), entry["after"])]
+        if conflicts:
+            raise InstallError("owned path changed during transaction preflight: " + ", ".join(conflicts))
+
+    def _projection_matches(self, entry: dict[str, Any]) -> bool:
+        path, after = Path(entry["path"]), entry["after"]
+        return self._matches_version(path, after) and (
+            not after.get("exists") or path.stat().st_mode & 0o777 == int(entry["mode"]))
+
+    def _old_record(self) -> dict[str, Any] | None:
+        return _read_json(self.record_path) if self.record_path.exists() else None
+
+    def _safe_owned_path(self, path: Path, root: Path) -> None:
+        """An ownership record cannot redirect writes through a symlinked parent."""
+        if not _inside(path, root):
+            raise InstallError(f"owned path is outside its private destination: {path}")
+        current = root.absolute()
+        if current.is_symlink():
+            raise InstallError(f"owned destination root is symlinked: {current}")
+        relative = path.absolute().relative_to(current)
+        for part in relative.parts:
+            current = current / part
+            if current.is_symlink():
+                raise InstallError(f"owned destination has symlink ancestor: {current}")
+
+    def _expected_owned(self, release: Path) -> dict[str, str]:
+        expected = {str(self.bin_root / "agent-launch"): hashlib.sha256(self._launcher_body(release)).hexdigest(),
+                    str(self.launch_root / "profiles.toml"): _sha256(release / "launch" / "agent-launch.toml")}
+        i18n = release / "launch" / "i18n"
+        for source in sorted(i18n.glob("*.toml")):
+            expected[str(self.launch_root / "i18n" / source.name)] = _sha256(source)
+        return expected
+
+    def _validate_owned_record(self, record: dict[str, Any], release: Path) -> None:
+        expected = self._expected_owned(release)
+        launcher = record.get("launcher")
+        if launcher is not None:
+            if not isinstance(launcher, dict) or launcher.get("path") != str(self.bin_root / "agent-launch") \
+                    or launcher.get("sha256") != expected[str(self.bin_root / "agent-launch")]:
+                raise InstallError("private install record has an invalid launcher ownership claim")
+            self._safe_owned_path(Path(launcher["path"]), self.bin_root)
+        seen: set[str] = set()
+        for entry in record.get("config_files") or []:
+            if not isinstance(entry, dict) or not isinstance(entry.get("path"), str) or entry["path"] in seen:
+                raise InstallError("private install record has invalid config ownership entries")
+            seen.add(entry["path"])
+            if entry["path"] not in expected or entry.get("sha256") != expected[entry["path"]]:
+                raise InstallError(f"private install record has an invalid config ownership claim: {entry['path']}")
+            self._safe_owned_path(Path(entry["path"]), self.launch_root)
+
+    def _owned_hash(self, record: dict[str, Any] | None, path: Path) -> str | None:
+        if not record:
+            return None
+        for entry in [record.get("launcher"), *(record.get("config_files") or [])]:
+            if isinstance(entry, dict) and entry.get("path") == str(path):
+                value = entry.get("sha256")
+                return value if isinstance(value, str) else None
+        return None
+
+    def _write_owned(self, path: Path, content: bytes, old: dict[str, Any] | None, mode: int) -> dict[str, str] | None:
+        root = self.bin_root if path == self.bin_root / "agent-launch" else self.launch_root
+        self._safe_owned_path(path, root)
+        expected = self._owned_hash(old, path)
+        if path.exists() and (path.is_symlink() or (expected is None and _sha256(path) != hashlib.sha256(content).hexdigest())
+                            or (expected is not None and _sha256(path) != expected)):
+            return None
+        _atomic_bytes(path, content, mode)
+        return {"path": str(path), "sha256": hashlib.sha256(content).hexdigest()}
+
+    def _launcher_body(self, package_root: Path) -> bytes:
+        quoted = shlex.quote(str(package_root))
+        # Verify historical ownership using the exact released launcher vocabulary.
+        canonical = (package_root / "compose/instructions_store.py").is_file()
+        activation = ("unset AGENT_BIOS_PRIVATE_CORPUS\nexport AGENT_BIOS_PRIVATE_INSTRUCTIONS=1\n"
+                      if canonical else "export AGENT_BIOS_PRIVATE_CORPUS=1\n")
+        return ("#!/bin/sh\n"
+                + activation
+                + f"export AGENT_BIOS_PACKAGE_ROOT={quoted}\n"
+                "exec python3 \"$AGENT_BIOS_PACKAGE_ROOT/launch/agent-launch.py\" \"$@\"\n").encode("utf-8")
+
+    def _shell_manager(self):
+        path = Path(__file__).resolve().parent.parent / "launch/shell_integration.py"
+        spec = importlib.util.spec_from_file_location("agent_bios_shell_integration", path)
+        if spec is None or spec.loader is None:
+            raise InstallError("shell connection manager is unavailable")
+        module = importlib.util.module_from_spec(spec)
+        spec.loader.exec_module(module)
+        return module.ShellIntegration(self.env, self.repo)
+
+    def setup_catalog(self) -> dict[str, Any]:
+        return self._catalog(self.repo)
+
+    def setup_local_instructions(self) -> list[dict[str, Any]]:
+        """Describe existing private content independently of installation choices."""
+        try:
+            counts = self._store(self.repo).local_item_counts()
+        except (OSError, RuntimeError, ValueError) as exc:
+            raise InstallError(str(exc)) from exc
+        rows = []
+        for package_id, label in (("@local/personal", "Personal instructions"),
+                                  ("@local/learnings-claude", "Claude learning records"),
+                                  ("@local/learnings-codex", "Codex learning records")):
+            if counts.get(package_id):
+                rows.append({"target": package_id, "label": label, "item_count": counts[package_id]})
+        return rows
+
+    def setup_discover(self, project_roots=None) -> dict[str, Any]:
+        try:
+            from .instructions_import import discover
+        except ImportError:
+            from instructions_import import discover
+        return discover(environ=self.env, project_roots=project_roots)
+
+    def setup_revision(self) -> str:
+        """Bind an installation review to the current private selection and authoring."""
+        paths = (self.record_path, self.runtime / "state.json", self.user_root / "state.json")
+        return hashlib.sha256(_canonical({str(path): self._file_version(path) for path in paths})).hexdigest()
+
+    def _app_manager(self):
+        try:
+            from .instructions_app import AppBridge
+        except ImportError:
+            from instructions_app import AppBridge
+        return AppBridge(self.repo, self.env)
+
+    def _app_lifecycle(self, action: str, dry_run: bool = False) -> dict[str, Any]:
+        try:
+            manager = self._app_manager()
+            if action == "remove":
+                return (manager.unregister(dry_run) if manager.has_owned_registration()
+                        else manager.managed_status())
+            return manager.refresh_registration()
+        except (OSError, RuntimeError) as exc:
+            return {"changed": False, "needs_action": [str(exc)]}
+
+    def setup_extras(self, plan: dict[str, Any], dry_run: bool = False) -> dict[str, Any]:
+        try:
+            from .instructions_import import capture
+        except ImportError:
+            from instructions_import import capture
+        result: dict[str, Any] = {}
+        if plan.get("app_bridge"):
+            bridge = self._app_manager()
+            status = bridge.status()
+            if status.get("needs_action"):
+                raise InstallError("; ".join(status["needs_action"]))
+            result["app_bridge"] = ({"requested": True, "dry_run": True} if dry_run
+                                    else bridge.register())
+        paths = plan.get("import_paths") or []
+        if paths:
+            discovered = self.setup_discover(plan.get("project_roots"))
+            allowed = {row["path"] for row in discovered["sources"]}
+            if not set(paths) <= allowed:
+                raise InstallError("instruction import selection is not in the reviewed discovery set")
+            if dry_run:
+                result["import"] = {"paths": paths, "classification": "requires model review", "dry_run": True}
+            else:
+                record = self._old_record()
+                if record is None:
+                    raise InstallError("install the private runtime before capturing instructions")
+                try:
+                    captured = capture(self._store(Path(record["package_root"])), paths,
+                                       environ=self.env, project_roots=plan.get("project_roots"),
+                                       expected_source_digests=plan.get("_expected_source_digests"))
+                except (OSError, RuntimeError, ValueError) as exc:
+                    failure = InstallError(str(exc))
+                    failure.completed_extras = result
+                    raise failure from exc
+                result["import"] = {"capture_id": captured["capture_id"], "source_count": len(captured["sources"]),
+                                    "classification": "requires model review",
+                                    "next_command": "agent-bios import prompt " + captured["capture_id"],
+                                    "app_request": "Use $agent-bios to import capture " + captured["capture_id"]}
+        return result
+
+    def _shell_paths(self, action: str) -> list[dict[str, Any]]:
+        try:
+            manager = self._shell_manager()
+            # A receipt-less managed script may survive an interrupted opt-in.
+            # With neither, do not inspect or claim the user's startup file.
+            if not manager.has_connection():
+                return []
+            # Install owns and validates the upcoming launcher projection; it
+            # must also be able to repair a missing/non-executable entrypoint.
+            changes = manager.plan(action, installing=action == "restore")["changes"]
+        except (OSError, RuntimeError) as exc:
+            raise InstallError(str(exc)) from exc
+        return [{"path": str(row["path"]), "before": self._planned_version(row["before"]),
+                 "after": self._planned_version(row["after"]), "mode": row["mode"], "archive": False}
+                for row in changes]
+
+    @_serialized
+    def install(self, domains: str | None = None, dry_run: bool = False, *,
+                selection_mode: str | None = None, targets: list[str] | None = None) -> dict[str, Any]:
+        files = self._package_files()
+        explicit_selection = domains is not None or selection_mode is not None or targets is not None
+        if domains is not None and selection_mode is None:
+            selection_mode = "default"
+        if selection_mode not in {None, "default", "selected", "none"}:
+            raise InstallError("selection_mode must be default, selected, or none")
+        if targets is not None and (not isinstance(targets, list) or not all(isinstance(x, str) for x in targets)):
+            raise InstallError("instructions targets must be a list of qualified names")
+        if domains is not None and targets is not None:
+            raise InstallError("use domain flags or instructions targets, not both")
+        if domains is not None and selection_mode == "none":
+            raise InstallError("no-instructions installation cannot include domain flags")
+        requested = list(targets) if targets is not None else ([] if selection_mode == "none" else self._normalized_domains(domains))
+        if selection_mode == "none" and requested:
+            raise InstallError("no-instructions installation cannot include targets")
+        if selection_mode == "selected" and not requested:
+            raise InstallError("selected instructions installation needs at least one target")
+        prior = self._old_record()
+        # An update without an explicit selection must not broaden a saved
+        # core-only or domain-limited environment back to every domain.
+        if domains is None and not explicit_selection and isinstance((prior or {}).get("selection"), list):
+            requested = prior["selection"]
+            selection_mode = prior.get("selection_mode")
+        if selection_mode is not None:
+            preview_store = self._store(self.repo)
+            catalog = self.setup_catalog()
+            try:
+                available = list(catalog["items"])
+                runtime = preview_store._runtime_state()
+                if runtime.get("selected_baseline_ref"):
+                    user = preview_store._user_state()
+                    for host in ("claude", "codex"):
+                        available.extend(item for item in preview_store._effective_items(runtime, user, host=host)[0]
+                                         if item["package_id"].startswith("@local/") and item.get("active", True))
+                preview_store._validate_snapshot_selection(requested, catalog, available)
+            except (ValueError, RuntimeError) as exc:
+                raise InstallError(str(exc)) from exc
+        # A preview is strictly read-only.  A real install first refuses an
+        # unrelated reset, then finishes only its own pending install before
+        # creating an immutable release directory.
+        if not dry_run:
+            pending = pending_status(self.state_root)["transactions"]
+            if any(row["owner"] == "installer" and row["kind"] == "reset" for row in pending):
+                raise InstallError("pending reset requires recovery before install")
+            with operation_scope(self.state_root):
+                self._recover_pending_transactions()
+        release, entries, digest = self._copy_release(files, dry_run)
+        if dry_run:
+            return {"dry_run": True, "release": str(release), "release_digest": digest,
+                    "files": len(entries), "selection": requested, "selection_mode": selection_mode or "default",
+                    "corpus_storage": "packaged library retained privately; selection controls delivery"}
+        shell_paths = self._shell_paths("restore")
+        # Stage the immutable baseline before publishing either source pointers
+        # or launcher projections.  Store owns those source pointers; this
+        # coordinator owns all cross-owner ordering.
+        store = self._store(release)
+        prepare = getattr(store, "prepare_install", None)
+        if not callable(prepare):
+            raise InstallError("private instructions store does not support staged install recovery")
+        candidate = (prepare(requested, selection_mode=selection_mode, replace_selection=explicit_selection)
+                     if selection_mode is not None else prepare(requested))
+        if not isinstance(candidate, dict) or not isinstance(candidate.get("details"), dict):
+            raise InstallError("private instructions store returned an invalid install candidate")
+        details = candidate["details"]
+        baseline_ref = details.get("baseline_ref")
+        if not isinstance(baseline_ref, str):
+            raise InstallError("private instructions store candidate has no baseline ref")
+        owned: list[tuple[Path, bytes, int]] = [
+            (self.bin_root / "agent-launch", self._launcher_body(release), 0o755),
+            (self.launch_root / "profiles.toml", (release / "launch" / "agent-launch.toml").read_bytes(), 0o644),
+        ]
+        owned.extend((self.launch_root / "i18n" / source.name, source.read_bytes(), 0o644)
+                     for source in sorted((release / "launch" / "i18n").glob("*.toml")))
+        conflicts: list[str] = []
+        for path, content, _mode in owned:
+            current = self._file_version(path)
+            expected = self._owned_hash(prior, path)
+            if current["exists"] and current.get("sha256") != hashlib.sha256(content).hexdigest() and \
+                    (expected is None or current.get("sha256") != expected):
+                conflicts.append(str(path))
+        if conflicts:
+            raise InstallError("private install cannot replace user-owned paths: " + ", ".join(conflicts))
+        launcher = {"path": str(owned[0][0]), "sha256": hashlib.sha256(owned[0][1]).hexdigest()}
+        config = [{"path": str(path), "sha256": hashlib.sha256(content).hexdigest()}
+                  for path, content, _mode in owned[1:]]
+        record = {
+            "schema_version": SCHEMA_VERSION, "package_root": str(release), "release_digest": digest,
+            "installed_files": entries, "selection": requested, "baseline_ref": baseline_ref,
+            "launcher": launcher, "config_files": config, "created_at": int(time.time()),
+            "mode": "private-session-scoped", "needs_action": [],
+        }
+        if selection_mode is not None:
+            record["selection_mode"] = selection_mode
+        paths = [{"path": str(path), "before": self._file_version(path),
+                  "after": self._planned_version(content), "mode": mode}
+                 for path, content, mode in owned]
+        paths.extend(shell_paths)
+        paths.extend([
+            {"path": str(self.record_path), "before": self._file_version(self.record_path),
+             "after": self._planned_version(_canonical(record) + b"\n"), "mode": 0o600},
+            {"path": str(self.state_root / "corpus-status.json"),
+             "before": self._file_version(self.state_root / "corpus-status.json"),
+             "after": self._planned_version(self._launcher_status_bytes(release, requested)), "mode": 0o600},
+        ])
+        transaction_id = str(candidate.get("transaction_id") or uuid.uuid4().hex)
+        journal = self._transaction_path(transaction_id)
+        # Source candidates are persisted by InstructionsStore under the transaction
+        # id.  Keep only hashes here: personal source text is free-form and
+        # must never be accidentally archived by the installer journal.
+        association = {"transaction_id": transaction_id, "baseline_ref": baseline_ref,
+                       "selected_baseline_ref": details.get("selected_baseline_ref"),
+                       "items": details.get("items"),
+                       "source_before_sha256": hashlib.sha256(_canonical(candidate.get("before"))).hexdigest(),
+                       "source_after_sha256": hashlib.sha256(_canonical(candidate.get("after"))).hexdigest()}
+        journal_data = {"schema_version": SCHEMA_VERSION, "owner": "installer", "kind": "install", "state": "PREPARED",
+                        "phase": "preflight", "candidate": association, "paths": paths,
+                        "created_at": int(time.time())}
+        self._journal_write(journal, journal_data)
+        try:
+            with operation_scope(self.state_root):
+                self._finish_install_transaction(journal, journal_data, store, candidate)
+            return {"dry_run": False, "stored": True, "activation": "unverified", "record": record,
+                    "app_bridge": self._app_lifecycle("refresh")}
+        except BaseException as exc:
+            journal_data["state"] = "NEEDS_RECOVERY"
+            journal_data["error"] = type(exc).__name__
+            self._journal_write(journal, journal_data)
+            raise
+
+    def _finish_install_transaction(self, journal: Path, data: dict[str, Any], store: Any,
+                                    candidate: dict[str, Any] | None) -> None:
+        self._assert_preflight_paths(data["paths"])
+        data["state"], data["phase"] = "APPLYING", "projections"
+        self._journal_write(journal, data)
+        # Write candidate projections before source publication.  A crash here
+        # is harmless to readers because the journal guard is already durable.
+        for entry in data["paths"]:
+            path = Path(entry["path"])
+            if not self._projection_matches(entry):
+                self._write_planned(path, entry["after"], int(entry["mode"]))
+        data["phase"] = "source"
+        self._journal_write(journal, data)
+        commit = getattr(store, "commit_install", None)
+        if not callable(commit):
+            raise InstallError("private instructions store does not support staged install commit")
+        if candidate is None:
+            # The store persists the complete source candidate under this id;
+            # passing only it prevents installer journals from duplicating user
+            # authoring bytes (which could include sensitive free text).
+            commit({"transaction_id": data["candidate"]["transaction_id"]})
+        else:
+            commit(candidate)
+        data["phase"] = "verify"
+        self._journal_write(journal, data)
+        # The record/status are included in paths and now exact.  Verify the
+        # installed source and every owned projection before success is visible.
+        self._verify_transaction_install(data)
+        data["state"], data["phase"], data["committed_at"] = "COMMITTED", "complete", int(time.time())
+        self._journal_write(journal, data)
+
+    def _verify_transaction_install(self, data: dict[str, Any]) -> None:
+        for entry in data["paths"]:
+            if not self._projection_matches(entry):
+                raise InstallError(f"transaction projection did not verify: {entry['path']}")
+        record = _read_json(self.record_path)
+        release = Path(record["package_root"])
+        self._verify_release(release, record["installed_files"])
+        self._validate_owned_record(record, release)
+        source = _read_json(self.runtime / "state.json")
+        if source.get("last_successful_install_ref") != record.get("baseline_ref"):
+            raise InstallError("staged instructions baseline was not published")
+
+    def _recover_pending_transactions(self) -> None:
+        root = self.runtime / "installer-transactions"
+        if not root.exists():
+            return
+        for journal in sorted(root.glob("*/journal.json")):
+            data = _read_json(journal)
+            if data.get("state") not in {"PREPARED", "APPLYING", "NEEDS_RECOVERY"}:
+                continue
+            if data.get("kind") != "install" or not isinstance(data.get("candidate"), dict) \
+                    or not isinstance(data.get("paths"), list):
+                raise InstallError(f"unrecoverable transaction journal: {journal}")
+            association = data["candidate"]
+            release_record = next((entry for entry in data["paths"] if entry.get("path") == str(self.record_path)), None)
+            if not isinstance(release_record, dict):
+                raise InstallError(f"transaction journal lacks install record: {journal}")
+            encoded = release_record.get("after", {}).get("bytes_b64")
+            if not isinstance(encoded, str):
+                raise InstallError(f"transaction journal lacks record bytes: {journal}")
+            record = json.loads(base64.b64decode(encoded.encode("ascii"), validate=True))
+            release = Path(record.get("package_root", ""))
+            if not release.is_dir() or release.is_symlink():
+                raise InstallError(f"transaction release is unavailable: {journal}")
+            try:
+                with operation_scope(self.state_root):
+                    self._finish_install_transaction(journal, data, self._store(release), None)
+            except BaseException as exc:
+                data["state"], data["error"] = "NEEDS_RECOVERY", type(exc).__name__
+                self._journal_write(journal, data)
+                raise InstallError(f"pending install requires recovery: {journal}") from exc
+
+    @_serialized
+    def verify(self) -> dict[str, Any]:
+        try:
+            guard_pending(self.state_root)
+        except TransactionError as exc:
+            raise InstallError(str(exc)) from exc
+        record = self._old_record()
+        if record is None:
+            raise InstallError("no private install record")
+        if record.get("schema_version") != SCHEMA_VERSION:
+            raise InstallError("private install record schema mismatch")
+        if record.get("needs_action"):
+            raise InstallError("private install is incomplete; resolve owned-path conflicts: "
+                               + ", ".join(str(path) for path in record["needs_action"]))
+        release = Path(record.get("package_root", ""))
+        releases = self.runtime / "releases"
+        if not _inside(release, releases) or release.is_symlink() or not release.is_dir():
+            raise InstallError("private install record has unsafe package root")
+        entries = record.get("installed_files")
+        if not isinstance(entries, list) or not entries:
+            raise InstallError("private install record has no installed files")
+        self._verify_release(release, entries)
+        self._validate_owned_record(record, release)
+        catalog = self._catalog(release)
+        if not catalog.get("items"):
+            raise InstallError("private catalog is empty")
+        source_state = _read_json(self.runtime / "state.json")
+        if source_state.get("last_successful_install_ref") != record.get("baseline_ref"):
+            raise InstallError("private baseline does not match install record")
+        for entry in [record.get("launcher"), *(record.get("config_files") or [])]:
+            if not isinstance(entry, dict):
+                continue
+            path = Path(entry.get("path", ""))
+            if path.is_symlink() or not path.is_file() or _sha256(path) != entry.get("sha256"):
+                raise InstallError(f"private owned file drifted: {path}")
+        launcher_status = _read_json(self.state_root / "corpus-status.json")
+        domains = launcher_status.get("domains")
+        if launcher_status.get("repo") != str(release) or not isinstance(domains, dict) or \
+                not isinstance(domains.get("available"), list) or not isinstance(domains.get("applied"), list):
+            raise InstallError("launcher instructions-status projection is missing or malformed")
+        return {"stored": True, "catalog_items": len(catalog["items"]), "baseline_ref": record["baseline_ref"],
+                "activation": "unverified"}
+
+    @_serialized
+    def status(self) -> dict[str, Any]:
+        try:
+            pending = pending_status(self.state_root)
+        except TransactionError as exc:
+            raise InstallError(str(exc)) from exc
+        record = self._old_record()
+        if not record:
+            return {"installed": False, "activation": "unverified", **pending}
+        return {"installed": True, "package_root": record.get("package_root"),
+                "baseline_ref": record.get("baseline_ref"), "needs_action": record.get("needs_action", []),
+                "activation": "unverified", **pending}
+
+    def _active_intents(self) -> list[Path]:
+        root = self.runtime / "activations"
+        if not root.is_dir():
+            return []
+        active = []
+        for journal in root.glob("*/journal.json"):
+            with contextlib.suppress(InstallError):
+                data = _read_json(journal)
+                if data.get("state") in {"PREPARED", "HOST_OBSERVED"}:
+                    active.append(journal)
+        return active
+
+    @_serialized
+    def uninstall(self, dry_run: bool = False) -> dict[str, Any]:
+        record = self._old_record()
+        if record is not None:
+            release = Path(record.get("package_root", ""))
+            if not _inside(release, self.runtime / "releases") or release.is_symlink() or not release.is_dir():
+                raise InstallError("private install record has unsafe package root")
+            self._validate_owned_record(record, release)
+        shell_removed: list[str] = []
+        try:
+            manager = self._shell_manager()
+            if manager.has_connection():
+                shell_removed = manager.apply("remove", dry_run)["changed_paths"]
+        except (OSError, RuntimeError) as exc:
+            raise InstallError(str(exc)) from exc
+        if record is None:
+            app = self._app_lifecycle("remove", dry_run)
+            return {"removed": shell_removed, "preserved": ["no private install record"], "app_bridge": app}
+        removed: list[str] = list(shell_removed)
+        preserved: list[str] = []
+        for entry in [record.get("launcher"), *(record.get("config_files") or [])]:
+            if not isinstance(entry, dict):
+                continue
+            path = Path(entry.get("path", ""))
+            expected = entry.get("sha256")
+            if path.is_file() and not path.is_symlink() and isinstance(expected, str) and _sha256(path) == expected:
+                if not dry_run:
+                    path.unlink()
+                removed.append(str(path))
+            elif path.exists():
+                preserved.append(str(path))
+        intents = self._active_intents()
+        if intents:
+            preserved.extend(str(path) for path in intents)
+        elif _inside(release, self.runtime / "releases") and release.is_dir() and not release.is_symlink():
+            if not dry_run:
+                shutil.rmtree(release)
+            removed.append(str(release))
+        else:
+            preserved.append(str(release))
+        if not intents and not dry_run:
+            self.record_path.unlink(missing_ok=True)
+        # User package/overlays/learnings and session snapshots/pins are purposely
+        # not enumerated or deleted here.  No whole state-root removal occurs.
+        app = self._app_lifecycle("remove", dry_run)
+        return {"removed": removed, "preserved": preserved, "app_bridge": app,
+                "retained": [str(self.user_root), str(self.state_root / "sessions")]}
+
+    def _reset_layout(self, record: dict[str, Any], release: Path) -> tuple[list[Path], Path, Path, list[tuple[Path, bytes, int]]]:
+        local = [self.launch_root / name for name in ("presets.local.toml", "review-methods.local.toml", "launcher.local.toml")]
+        connections = self.launch_root.parent / "agent-bios"
+        cleanup = [*local, connections / "ingest-url", self.user_root / "understand" / "state.json"]
+        owned = [(self.bin_root / "agent-launch", self._launcher_body(release), 0o755),
+                 (self.launch_root / "profiles.toml", (release / "launch" / "agent-launch.toml").read_bytes(), 0o644)]
+        owned.extend((self.launch_root / "i18n" / p.name, p.read_bytes(), 0o644)
+                     for p in sorted((release / "launch" / "i18n").glob("*.toml")))
+        return cleanup, connections / "token", connections, owned
+
+    def _learning_versions(self) -> dict[str, dict[str, Any]]:
+        """Learning events are authoring input, not reset-owned cleanup."""
+        return {host: self._file_version(self.user_root / "learnings" / host / "events.jsonl")
+                for host in ("claude", "codex")}
+
+    def _reset_preview(self) -> dict[str, Any]:
+        record = self._old_record()
+        if record is None:
+            raise InstallError("cannot reset before private install")
+        release = Path(record.get("package_root", ""))
+        if not _inside(release, self.runtime / "releases") or release.is_symlink() or not release.is_dir():
+            raise InstallError("private install record has unsafe package root")
+        self._validate_owned_record(record, release)
+        cleanup, secret, _connections, owned = self._reset_layout(record, release)
+        targets = [{"path": str(path), "before": self._file_version(path), "after": {"exists": False}, "mode": 0o600,
+                    "archive": True} for path in cleanup]
+        targets.extend(self._shell_paths("remove"))
+        targets.extend({"path": str(path), "before": self._file_version(path), "after": self._planned_version(body),
+                        "mode": mode, "archive": False} for path, body, mode in owned)
+        status_path = self.state_root / "corpus-status.json"
+        targets.append({"path": str(status_path), "before": self._file_version(status_path),
+                        "after": self._planned_version(self._launcher_status_bytes(
+                            release, record["selection"], record.get("created_at") if isinstance(record.get("created_at"), int) else 0)),
+                        "mode": 0o600, "archive": False})
+        secret_before = self._file_version(secret, allow_bytes=False)
+        pending = pending_status(self.state_root)
+        learning = self._learning_versions()
+        fingerprint = hashlib.sha256(_canonical({"record": _sha256(self.record_path), "runtime": self._file_version(self.runtime / "state.json"),
+                                                 "user": self._file_version(self.user_root / "state.json"), "targets": targets,
+                                                 "secret": secret_before, "learning": learning, "pending": pending["transactions"]})).hexdigest()
+        return {"preview": True, "expected_revision": fingerprint, "pending": pending,
+                "archive": [entry["path"] for entry in targets if entry["archive"] and entry["before"]["exists"]],
+                "delete_without_archive": [str(secret)] if secret_before["exists"] else [],
+                "restore_defaults": [entry["path"] for entry in targets if not entry["archive"]],
+                "retained": [str(self.state_root / "sessions"), str(self.user_root / "learnings")],
+                "record": record, "release": release, "targets": targets, "secret_before": secret_before,
+                "learning_before": learning}
+
+    @_serialized
+    def reset(self, apply: bool = False, yes: bool = False, expected_revision: str | None = None) -> dict[str, Any]:
+        """Preview first; an apply accepts exactly that observed generation."""
+        preview = self._reset_preview()
+        if not apply:
+            return {key: value for key, value in preview.items() if key not in {"record", "release", "targets", "secret_before", "learning_before"}}
+        if not yes or not isinstance(expected_revision, str):
+            raise InstallError("reset apply requires --yes and preview expected_revision")
+        pending = [row for row in preview["pending"]["transactions"] if row["owner"] == "installer"]
+        if any(row["kind"] == "install" for row in pending):
+            raise InstallError("pending install requires recovery before reset")
+        for row in pending:
+            data = _read_json(Path(row["path"]))
+            if data.get("owner") != "installer" or data.get("kind") != "reset":
+                raise InstallError(f"pending reset requires fresh preview: {row['path']}")
+            if data.get("intent", {}).get("accepted_revision") == expected_revision:
+                return self._recover_reset(Path(row["path"]), data)
+        if preview["expected_revision"] != expected_revision:
+            raise InstallError("reset preview is stale; preview again before applying")
+        record, release, targets = preview["record"], preview["release"], preview["targets"]
+        with operation_scope(self.state_root):
+            plan = self._store(release).plan({"operation": "reset"})
+        reset_id = f"{int(time.time())}-{uuid.uuid4().hex[:12]}"
+        journal = self.runtime / "resets" / reset_id / "journal.json"
+        archive = self.user_root / "history" / reset_id / "launcher-config"
+        data = {"schema_version": SCHEMA_VERSION, "owner": "installer", "kind": "reset", "state": "PREPARED", "phase": "preflight",
+                "archive": str(archive), "targets": targets, "secret_before": preview["secret_before"], "learning_before": preview["learning_before"],
+                "intent": {"plan_id": plan["plan_id"], "expected_revision": plan["expected_revision"],
+                           "accepted_revision": expected_revision, "record_sha256": _sha256(self.record_path)},
+                "retained": preview["retained"], "created_at": int(time.time())}
+        _atomic_json(journal, data)
+        # Keep the old publication guard until the replacement intent is durable.
+        for row in pending:
+            prior = _read_json(Path(row["path"]))
+            prior["state"] = "SUPERSEDED"
+            _atomic_json(Path(row["path"]), prior)
+        return self._recover_reset(journal, data)
+
+    def _source_pair_ok(self, data: dict[str, Any]) -> bool:
+        plan_path = self.runtime / "transactions" / data["intent"]["plan_id"] / "journal.json"
+        plan = _read_json(plan_path).get("plan", {})
+        before, after = plan.get("before", {}), plan.get("after", {})
+        runtime, user = _read_json(self.runtime / "state.json"), _read_json(self.user_root / "state.json")
+        return runtime in (before.get("runtime"), after.get("runtime")) and user in (before.get("user"), after.get("user"))
+
+    def _recover_reset(self, journal: Path, data: dict[str, Any]) -> dict[str, Any]:
+        """Preflight every target and source pair before changing one byte."""
+        try:
+            if data["intent"].get("record_sha256") != _sha256(self.record_path) or not self._source_pair_ok(data):
+                raise InstallError("reset state changed; obtain a fresh preview")
+            if data.get("learning_before") != self._learning_versions():
+                raise InstallError("reset learning source changed; obtain a fresh preview")
+            targets = data.get("targets")
+            if not isinstance(targets, list):
+                raise InstallError("pending reset requires fresh preview")
+            for entry in targets:
+                if not (self._matches_version(Path(entry["path"]), entry["before"]) or self._matches_version(Path(entry["path"]), entry["after"])):
+                    raise InstallError(f"reset target changed; obtain a fresh preview: {entry['path']}")
+            secret = self.launch_root.parent / "agent-bios" / "token"; prior = data.get("secret_before", {"exists": False})
+            if not (self._matches_version(secret, prior) or not secret.exists()):
+                raise InstallError("reset token changed; obtain a fresh preview")
+            release = Path(self._old_record()["package_root"])
+            archive = Path(data["archive"])
+            data.update({"state": "APPLYING", "phase": "archive"}); _atomic_json(journal, data)
+            for entry in targets:
+                path = Path(entry["path"])
+                if entry.get("archive") and entry["before"].get("exists"):
+                    target = archive / path.name
+                    if not target.exists(): self._write_planned(target, entry["before"], 0o600)
+                if entry.get("archive") and not self._matches_version(path, entry["after"]): self._write_planned(path, entry["after"], int(entry["mode"]))
+            data["phase"] = "source"; _atomic_json(journal, data)
+            with operation_scope(self.state_root):
+                result = self._store(release).apply(data["intent"]["plan_id"], data["intent"]["expected_revision"])
+            data["result"] = result; data["phase"] = "projections"; _atomic_json(journal, data)
+            for entry in targets:
+                if not entry.get("archive") and not self._projection_matches(entry): self._write_planned(Path(entry["path"]), entry["after"], int(entry["mode"]))
+            if prior.get("exists"):
+                if self._matches_version(secret, prior):
+                    secret.unlink()
+                elif secret.exists():
+                    raise InstallError("reset token changed; obtain a fresh preview")
+            data.update({"state": "COMMITTED", "phase": "complete", "committed_at": int(time.time())}); _atomic_json(journal, data)
+            return {"preview": False, "reset": data["result"], "archive": data["archive"], "retained": data["retained"], "recovered": True}
+        except BaseException as exc:
+            data.update({"state": "NEEDS_RECOVERY", "error": type(exc).__name__}); _atomic_json(journal, data); raise
+
+    def _legacy_manifest_files(self, needs_action: list[str], read=None) -> list[Path]:
+        manifest = self.state_root / "manifest.txt"
+        if manifest.is_symlink():
+            needs_action.append(f"unsafe legacy manifest symlink: {manifest}")
+            return []
+        content = read(manifest) if read else manifest.read_bytes() if manifest.is_file() else None
+        if content is None:
+            return []
+        private = self._old_record()
+        protected: set[str] = set()
+        if private is not None:
+            self._validate_owned_record(private, Path(private.get("package_root", "")))
+            protected = {str(entry["path"]) for entry in
+                         [private["launcher"], *private.get("config_files", [])]}
+        owned = self._legacy_manifest_destinations()
+        paths: list[Path] = []
+        body = content.decode("utf-8")
+        for raw in body.splitlines():
+            if not raw.strip():
+                continue
+            path = Path(raw.strip())
+            if str(path) in protected:
+                continue
+            if not path.is_absolute() or path in {self.claude_root / "CLAUDE.md", self.codex_root / "AGENTS.md"}:
+                needs_action.append(f"unowned legacy manifest target: {path}")
+                continue
+            if path.is_symlink():
+                needs_action.append(f"unsafe legacy manifest target: {path}")
+                continue
+            try:
+                self._migration_target_root(path)
+            except InstallError as exc:
+                needs_action.append(str(exc))
+                continue
+            if path not in owned:
+                # A prior installer wrote broad directory walks into its manifest.
+                # Root containment proves only where a file lives, never who wrote it.
+                # A stale absent entry is harmless; an existing unknown file is not.
+                if path.exists():
+                    needs_action.append(f"unowned legacy manifest target: {path}")
+                continue
+            if path.exists() and not path.is_file():
+                needs_action.append(f"legacy manifest target is not a regular file: {path}")
+                continue
+            paths.append(path)
+        return paths
+
+    def _legacy_manifest_destinations(self, package_root: Path | None = None) -> set[Path]:
+        """Return only paths a legacy installer could derive from this source.
+
+        The old manifest included a recursive scan of ``central``.  This map is
+        deliberately source-derived instead of treating a shared native root as
+        a claim of ownership, so a same-directory user file remains protected.
+        """
+        source_root = (package_root or self.repo).resolve()
+        owned: set[Path] = {
+            self.state_root / "version.json",
+            self.claude_root / "central" / "bundle.md",
+            self.claude_root / "personal" / "learnings.jsonl",
+            self.codex_root / "personal" / "learnings.jsonl",
+        }
+
+        def source_file(relative: str) -> Path | None:
+            path = source_root / relative
+            return path if path.is_file() and not path.is_symlink() else None
+
+        native = (
+            ("wrappers/codex-run.sh", self.codex_root / "bin" / "codex-run"),
+            ("wrappers/codex-helm.sh", self.codex_root / "bin" / "codex-helm"),
+            ("wrappers/claude-run.sh", self.claude_root / "bin" / "claude-run"),
+            ("launch/agent-launch.py", self.bin_root / "agent-launch"),
+            ("launch/agent-launch.toml", self.launch_root / "profiles.toml"),
+            ("launch/agent-launch.zsh", self.launch_root / "shell.zsh"),
+        )
+        owned.update(destination for source, destination in native if source_file(source) is not None)
+        i18n = source_root / "launch" / "i18n"
+        if i18n.is_dir() and not i18n.is_symlink():
+            owned.update(self.launch_root / "i18n" / source.name
+                         for source in i18n.glob("*.toml") if source.is_file() and not source.is_symlink())
+
+        catalog = self._catalog(source_root)
+        for item in catalog.get("items", []):
+            if not isinstance(item, dict):
+                continue
+            kind = item.get("kind")
+            origin = item.get("origin")
+            source = origin.get("source_path") if isinstance(origin, dict) else None
+            members = item.get("members")
+            if not isinstance(source, str) or not isinstance(members, dict):
+                continue
+            for member in members:
+                if not isinstance(member, str):
+                    continue
+                relative = PurePosixPath(member)
+                if relative.is_absolute() or ".." in relative.parts or len(relative.parts) < 2:
+                    continue
+                tail = Path(*relative.parts[1:])
+                if kind == "guide" and source.startswith("claude/guides/") and relative.parts[0] == "guides":
+                    owned.update({self.claude_root / "guides" / tail,
+                                  self.claude_root / "central" / "guides" / tail,
+                                  self.codex_root / "guides" / tail})
+                elif kind == "hook" and source.startswith("claude/hooks/") and relative.parts[0] == "hooks":
+                    owned.add(self.claude_root / "central" / "hooks" / tail)
+                elif kind == "agent" and source.startswith("claude/agents/") and relative.parts[0] == "agents":
+                    owned.add(self.claude_root / "central" / "agents" / tail)
+                elif kind == "skill" and source.startswith("claude/skills/") and relative.parts[0] == "skills":
+                    owned.update({self.claude_root / "skills" / tail,
+                                  self.codex_root / "skills" / tail})
+
+        agents = source_root / "codex" / "agents"
+        if agents.is_dir() and not agents.is_symlink():
+            owned.update(self.codex_root / "agents" / source.name
+                         for source in agents.glob("*.toml") if source.is_file() and not source.is_symlink())
+        return owned
+
+    def _migration_cleanup_destinations(self, release: Path) -> set[Path]:
+        """The pinned release plus bounded native edits define replay authority."""
+        return self._legacy_manifest_destinations(release) | {
+            self.state_root / "manifest.txt",
+            self.claude_root / "CLAUDE.md",
+            self.claude_root / "personal" / "learnings.md",
+            self.claude_root / "settings.json",
+            self.codex_root / "AGENTS.md",
+            self.codex_root / "config.toml",
+            self.zdotdir / ".zshrc",
+            self.zdotdir / ".zshenv",
+            self.zdotdir / ".zprofile",
+        }
+
+    def _has_legacy_learning_projection(self, host: str, prose: Path, read=None) -> bool:
+        if prose.is_symlink():
+            return True
+        body = read(prose) if read else prose.read_bytes() if prose.is_file() else None
+        if body is None:
+            return False
+        if host == "codex":
+            return PERSONAL_START.encode() in body or PERSONAL_END.encode() in body
+        # The published legacy installer seeds this exact empty automation-owned file.
+        assembler = self._private_module(self.repo, "assemble")
+        return body != assembler.PERSONAL_LEARNINGS_HEADER.encode("utf-8")
+
+    def _legacy_events(self, host: str, needs_action: list[str], read=None) -> tuple[list[dict[str, str]], Path | None]:
+        home = self.claude_root if host == "claude" else self.codex_root
+        source = home / "personal" / "learnings.jsonl"
+        prose = home / "personal" / "learnings.md" if host == "claude" else home / "AGENTS.md"
+        projection = self._has_legacy_learning_projection(host, prose, read)
+        if source.is_symlink():
+            needs_action.append(f"legacy {host} learning JSONL is symlinked: {source}")
+            return [], None
+        content = read(source) if read else source.read_bytes() if source.is_file() else None
+        if projection and content is None:
+            needs_action.append(f"legacy {host} learning projection has no immutable JSONL source: {prose}")
+            return [], None
+        if content is None:
+            return [], None
+        schema = _read_json(self.repo / "learn" / "learning.schema.json")
+        allowed = set((schema.get("properties") or {}).keys())
+        required = set(schema.get("required") or [])
+        events: list[dict[str, str]] = []
+        seen: dict[str, str] = {}
+        body = content.decode("utf-8")
+        for number, line in enumerate(body.splitlines(), 1):
+            if not line.strip():
+                continue
+            try:
+                raw = json.loads(line)
+            except ValueError:
+                needs_action.append(f"invalid legacy {host} learning JSONL at {source}:{number}")
+                continue
+            if (not isinstance(raw, dict) or set(raw) - allowed or required - set(raw)
+                    or raw.get("schema_version") != 1 or not isinstance(raw.get("learning_id"), str)
+                    or not LEARNING_ID.fullmatch(raw["learning_id"])
+                    or not isinstance(raw.get("lesson"), str) or not isinstance(raw.get("domain"), str)
+                    or not isinstance(raw.get("created"), str) or not isinstance(raw.get("supporting_sessions"), list)
+                    or not all(isinstance(value, str) for value in raw["supporting_sessions"])):
+                needs_action.append(f"invalid collector v1 {host} learning record at {source}:{number}")
+                continue
+            prior = seen.get(raw["learning_id"])
+            if prior is not None:
+                if prior != line:
+                    needs_action.append(f"same learning_id has different legacy bytes at {source}:{number}")
+                continue
+            seen[raw["learning_id"]] = line
+            events.append({"learning_id": raw["learning_id"], "raw": line})
+        return events, source
+
+    def _event_destination_conflicts(self, host: str, events: list[dict[str, str]], needs_action: list[str]) -> None:
+        target = self.user_root / "learnings" / host / "events.jsonl"
+        if not target.exists():
+            return
+        if target.is_symlink():
+            needs_action.append(f"unsafe private {host} learning event symlink: {target}")
+            return
+        existing: dict[str, str] = {}
+        for number, line in enumerate(target.read_text(encoding="utf-8").splitlines(), 1):
+            if not line.strip():
+                continue
+            try:
+                record = json.loads(line)
+            except ValueError:
+                needs_action.append(f"invalid private {host} learning JSONL at {target}:{number}")
+                continue
+            learning_id = record.get("learning_id") if isinstance(record, dict) else None
+            if not isinstance(learning_id, str):
+                needs_action.append(f"invalid private {host} learning record at {target}:{number}")
+                continue
+            previous = existing.get(learning_id)
+            if previous is not None and previous != line:
+                needs_action.append(f"same learning_id has different private bytes at {target}:{number}")
+            existing[learning_id] = line
+        for event in events:
+            current = existing.get(event["learning_id"])
+            if current is not None and current != event["raw"]:
+                needs_action.append(f"same learning_id has different source/private bytes: {event['learning_id']}")
+
+    def _legacy_hook_registration_needed(self, needs_action: list[str], read=None) -> bool:
+        """Use the assembler's exact command-ownership rule, after parse proof."""
+        settings = self.claude_root / "settings.json"
+        if settings.is_symlink():
+            needs_action.append(f"unsafe Claude settings symlink: {settings}")
+            return False
+        content = read(settings) if read else settings.read_bytes() if settings.is_file() else None
+        if content is None:
+            return False
+        try:
+            data = json.loads(content.decode("utf-8"))
+        except ValueError:
+            needs_action.append(f"unreadable Claude settings for legacy hook removal: {settings}")
+            return False
+        hooks = data.get("hooks") if isinstance(data, dict) else None
+        if not isinstance(hooks, dict):
+            return False
+        names = set((_read_json(self.repo / "compose" / "domains.json").get("hooks") or {}).keys())
+        for entries in hooks.values():
+            if not isinstance(entries, list):
+                continue
+            for entry in entries:
+                for hook in entry.get("hooks", []) if isinstance(entry, dict) else []:
+                    command = hook.get("command", "") if isinstance(hook, dict) else ""
+                    if isinstance(command, str) and any(f"/hooks/{name}" in command for name in names):
+                        return True
+        return False
+
+    def _legacy_hook_settings(self, release: Path, before: bytes) -> bytes:
+        """Plan the assembler's exact ownership-sensitive edit without touching the host."""
+        module = self._private_module(release, "assemble")
+        manifest = _read_json(release / "compose" / "domains.json")
+        with tempfile.TemporaryDirectory(prefix="instructions-hook-plan-") as raw:
+            root = Path(raw)
+            _atomic_bytes(root / "settings.json", before, 0o600)
+            module.merge_settings(root, [], release / "claude" / "settings.template.json",
+                                  owned_names=manifest.get("hooks", {}))
+            return (root / "settings.json").read_bytes()
+
+    def migration_plan(self) -> dict[str, Any]:
+        return self._plan_migration()[0]
+
+    def _plan_migration(self) -> tuple[dict[str, Any], dict[str, dict[str, Any]]]:
+        # A transformation and its version predicate must describe the same read.
+        inputs: dict[str, dict[str, Any]] = {}
+
+        def read(path: Path) -> bytes | None:
+            raw = str(path)
+            if raw not in inputs:
+                self._migration_target_root(path)
+                inputs[raw] = self._file_version(path)
+            if not inputs[raw]["exists"]:
+                return None
+            return base64.b64decode(inputs[raw]["bytes_b64"].encode("ascii"), validate=True)
+
+        needs_action: list[str] = []
+
+        def text(path: Path) -> str | None:
+            if path.is_symlink():
+                needs_action.append(f"unsafe native migration input symlink: {path}")
+                return None
+            content = read(path)
+            return content.decode("utf-8") if content is not None else None
+
+        writes: list[dict[str, str]] = []
+        claude_entry = self.claude_root / "CLAUDE.md"
+        body = text(claude_entry)
+        if body is not None:
+            new, removed = _remove_claude_imports(body)
+            if removed:
+                writes.append({"path": str(claude_entry), "content": new, "kind": "claude-imports"})
+        codex_entry = self.codex_root / "AGENTS.md"
+        body = text(codex_entry)
+        if body is not None:
+            new, outcome = _remove_spans(body)
+            if new is None:
+                needs_action.extend(f"{codex_entry}: {message}" for message in outcome)
+            elif outcome:
+                writes.append({"path": str(codex_entry), "content": new, "kind": "codex-markers"})
+        codex_config = self.codex_root / "config.toml"
+        body = text(codex_config)
+        if body is not None:
+            stripped, changed = _strip_codex_config_additions(body)
+            if stripped is None:
+                needs_action.append(f"cannot safely remove legacy Codex config additions: {codex_config}")
+            elif changed:
+                writes.append({"path": str(codex_config), "content": stripped, "kind": "codex-config-additions"})
+        for startup in (self.zdotdir / ".zshrc", self.zdotdir / ".zshenv", self.zdotdir / ".zprofile"):
+            body = text(startup)
+            if body is not None:
+                lines = body.splitlines(keepends=True)
+                changed = [line for line in lines if line.strip() == ZSH_HOOK]
+                if changed:
+                    writes.append({"path": str(startup), "content": "".join(line for line in lines if line.strip() != ZSH_HOOK), "kind": "zsh-hook"})
+        events: dict[str, list[dict[str, str]]] = {}
+        learning_sources: dict[str, Path] = {}
+        for host in ("claude", "codex"):
+            captured, source = self._legacy_events(host, needs_action, read)
+            if captured:
+                events[host] = captured
+                self._event_destination_conflicts(host, captured, needs_action)
+                if source is not None:
+                    learning_sources[host] = source
+        deletes = self._legacy_manifest_files(needs_action, read)
+        manifest = self.state_root / "manifest.txt"
+        if not manifest.is_symlink() and read(manifest) is not None:
+            deletes.append(manifest)
+        seed = self.claude_root / "personal" / "learnings.md"
+        if not seed.is_symlink() and read(seed) is not None and not self._has_legacy_learning_projection("claude", seed, read):
+            deletes.append(seed)
+        # Legacy learning projections are removed only when their immutable source
+        # was successfully parsed and is scheduled for the private event store.
+        for host, source in learning_sources.items():
+            deletes.append(Path(source))
+            if host == "claude":
+                projection = self.claude_root / "personal" / "learnings.md"
+                if not projection.is_symlink() and read(projection) is not None:
+                    deletes.append(projection)
+        remove_hooks = self._legacy_hook_registration_needed(needs_action, read)
+        if not needs_action:
+            for path in deletes:
+                read(path)
+        plan = {"schema_version": SCHEMA_VERSION, "writes": writes, "deletes": sorted({str(p) for p in deletes}),
+                "events": events, "remove_hook_registrations": remove_hooks, "needs_action": needs_action}
+        return plan, inputs
+
+    def _backup(self, root: Path, path: Path) -> Path:
+        target = root / "files" / str(path).lstrip("/")
+        _atomic_bytes(target, path.read_bytes(), 0o600)
+        return target
+
+    def _migration_target_root(self, path: Path) -> Path:
+        if not path.is_absolute() or ".." in path.parts:
+            raise InstallError(f"unsafe migration target: {path}")
+        roots = (self.claude_root, self.codex_root, self.launch_root, self.bin_root)
+        if path in {self.state_root / name for name in ("manifest.txt", "version.json")}:
+            root = self.state_root
+        elif path in {self.zdotdir / name for name in (".zshrc", ".zshenv", ".zprofile")}:
+            root = self.zdotdir
+        else:
+            root = next((r for r in roots if path != r and _inside(path, r)), None)
+        if root is None:
+            raise InstallError(f"migration target is outside owned roots: {path}")
+        self._safe_owned_path(path, root)
+        return root
+
+    def _migration_paths(self, plan: dict[str, Any], release: Path,
+                         inputs: dict[str, dict[str, Any]]) -> list[dict[str, Any]]:
+        changes: dict[str, bytes | None] = {raw: None for raw in plan["deletes"]}
+        for item in plan["writes"]:
+            if item["path"] in changes:
+                raise InstallError(f"migration both rewrites and deletes {item['path']}")
+            changes[item["path"]] = item["content"].encode("utf-8")
+        if plan["remove_hook_registrations"]:
+            path = str(self.claude_root / "settings.json")
+            if path in changes:
+                raise InstallError("legacy manifest conflicts with managed hook settings")
+            before = base64.b64decode(inputs[path]["bytes_b64"].encode("ascii"), validate=True)
+            changes[path] = self._legacy_hook_settings(release, before)
+        result = []
+        for raw, content in sorted(changes.items()):
+            path = Path(raw)
+            self._migration_target_root(path)
+            before = {key: value for key, value in inputs[raw].items() if key != "bytes_b64"}
+            result.append({"path": raw, "before": before,
+                           "after": self._planned_version(content),
+                           "mode": (path.stat().st_mode & 0o777) if path.exists() else 0o600})
+        return result
+
+    def _validate_migration(self, journal: Path, data: dict[str, Any]) -> Path:
+        self._safe_owned_path(journal, self.runtime / "migrations")
+        phases = {"preflight", "cleanup", "install", "verify", "complete"}
+        if data.get("kind") != "migrate" or data.get("phase") not in phases or \
+                not isinstance(data.get("paths"), list) or not isinstance(data.get("plan"), dict) or \
+                not isinstance(data.get("inputs"), dict):
+            raise InstallError(f"legacy migration journal has no safe replay plan; recover its backup first: {journal}")
+        release_record = data.get("release")
+        if not isinstance(release_record, dict):
+            raise InstallError(f"migration journal lacks its pinned release: {journal}")
+        try:
+            release = _valid_release(self.state_root, release_record)
+        except TransactionError as exc:
+            raise InstallError(f"invalid migration release: {journal}: {exc}") from exc
+        self._safe_owned_path(release, self.runtime / "releases")
+        if data.get("backup_root") != str(journal.parent / "backup"):
+            raise InstallError(f"unsafe migration backup root: {journal}")
+        self._safe_owned_path(Path(data["backup_root"]), journal.parent)
+        cleanup_destinations = self._migration_cleanup_destinations(release)
+        seen = set()
+        path_names = {entry.get("path") for entry in data["paths"] if isinstance(entry, dict)}
+        for raw, version in data["inputs"].items():
+            self._migration_target_root(Path(raw))
+            if not isinstance(version, dict) or not isinstance(version.get("exists"), bool):
+                raise InstallError(f"invalid migration input version: {journal}")
+            encoded = version.get("bytes_b64")
+            if encoded is not None:
+                if raw in path_names:
+                    raise InstallError(f"migration target input retains duplicate replay bytes: {journal}")
+                if not version["exists"] or not isinstance(encoded, str):
+                    raise InstallError(f"invalid retained migration input bytes: {journal}")
+                try:
+                    body = base64.b64decode(encoded.encode("ascii"), validate=True)
+                except (ValueError, AttributeError) as exc:
+                    raise InstallError(f"invalid retained migration input bytes: {journal}") from exc
+                if hashlib.sha256(body).hexdigest() != version.get("sha256"):
+                    raise InstallError(f"retained migration input digest mismatch: {journal}")
+        for entry in data["paths"]:
+            if not isinstance(entry, dict) or not isinstance(entry.get("path"), str) or entry["path"] in seen:
+                raise InstallError(f"invalid migration path entries: {journal}")
+            seen.add(entry["path"])
+            if data["inputs"].get(entry["path"]) != entry.get("before"):
+                raise InstallError(f"migration input and target versions disagree: {journal}")
+            path = Path(entry["path"])
+            self._migration_target_root(path)
+            if path not in cleanup_destinations:
+                raise InstallError(f"migration target is not a pinned legacy cleanup destination: {path}")
+            if not all(isinstance(entry.get(k), dict) for k in ("before", "after")):
+                raise InstallError(f"migration path lacks exact state: {journal}")
+            for key in ("before", "after"):
+                version = entry[key]
+                if not isinstance(version.get("exists"), bool):
+                    raise InstallError(f"invalid migration file state: {journal}")
+                if version["exists"]:
+                    if not re.fullmatch(r"[0-9a-f]{64}", str(version.get("sha256", ""))):
+                        raise InstallError(f"invalid migration file digest: {journal}")
+                    if key == "after":
+                        try:
+                            body = base64.b64decode(version["bytes_b64"].encode("ascii"), validate=True)
+                        except (KeyError, TypeError, ValueError, AttributeError) as exc:
+                            raise InstallError(f"invalid migration replay bytes: {journal}") from exc
+                        if hashlib.sha256(body).hexdigest() != version["sha256"]:
+                            raise InstallError(f"migration replay digest mismatch: {journal}")
+                elif set(version) != {"exists"}:
+                    raise InstallError(f"absent migration file carries replay data: {journal}")
+        return release
+
+    def _verify_transferred_events(self, plan: dict[str, Any]) -> None:
+        """Keep every planned legacy event byte-for-byte present until commit."""
+        for host, events in plan.get("events", {}).items():
+            target = self.user_root / "learnings" / host / "events.jsonl"
+            self._safe_owned_path(target, self.user_root)
+            if target.is_symlink() or not target.is_file():
+                raise InstallError(f"legacy learning transfer changed: {target}")
+            conflicts: list[str] = []
+            self._event_destination_conflicts(host, events, conflicts)
+            if conflicts:
+                raise InstallError("legacy learning transfer changed: " + "; ".join(conflicts))
+            lines = set(target.read_text(encoding="utf-8").splitlines())
+            missing = [event["learning_id"] for event in events if event["raw"] not in lines]
+            if missing:
+                raise InstallError(f"legacy learning transfer changed: {target}: " + ", ".join(missing))
+
+    def _verify_migration_native_state(self, release: Path, data: dict[str, Any], *, child_required: bool) -> None:
+        """Check cleanup outputs and untouched native inputs before a resume commits.
+
+        The private child owns only its recorded launcher/config projections.
+        Those exact paths may move from the migration's retired state to the
+        child state; every other native path must remain at the journaled state.
+        """
+        child = InstructionsInstaller(release, self.env)
+        child_owned = set(child._expected_owned(release))
+        targets = {entry["path"]: entry for entry in data["paths"]}
+        changed_inputs = [raw for raw, before in data["inputs"].items()
+                          if raw not in targets and not self._matches_version(Path(raw), before)]
+        if changed_inputs:
+            raise InstallError("migration input changed after cleanup: " + ", ".join(changed_inputs))
+
+        child_needs_verification = False
+        for raw, entry in targets.items():
+            path = Path(raw)
+            if raw in child_owned:
+                if not self._matches_version(path, entry["after"]):
+                    child_needs_verification = True
+                continue
+            if not self._matches_version(path, entry["after"]):
+                raise InstallError(f"migration target changed after cleanup: {path}")
+
+        if not child_required and not child_needs_verification:
+            return
+        child_pending = any(row["kind"] == "install" for row in pending_status(self.state_root)["transactions"])
+        if child_pending:
+            if child_required:
+                raise InstallError("pending private install prevents migration verification")
+            # ``install`` below owns replaying this child journal.  Its preflight
+            # validates its exact projections before it writes any of them.
+            return
+        record = child._old_record()
+        if record is None or record.get("package_root") != str(release):
+            raise InstallError("migration private install is missing its pinned release")
+        child.verify()
+
+    def _finish_migration(self, journal: Path, data: dict[str, Any]) -> dict[str, Any]:
+        release = self._validate_migration(journal, data)
+        plan, paths = data["plan"], data["paths"]
+        try:
+            with operation_scope(self.state_root):
+                if data["phase"] in {"preflight", "cleanup"}:
+                    self._assert_preflight_paths(paths)
+                    targets = {entry["path"] for entry in paths}
+                    for raw, before in data["inputs"].items():
+                        if raw not in targets and not self._matches_version(Path(raw), before):
+                            raise InstallError(f"migration input changed: {raw}")
+                    for entry in paths:
+                        path = Path(entry["path"])
+                        if not entry["before"].get("exists"):
+                            continue
+                        backup = Path(data["backup_root"]) / "files" / str(path).lstrip("/")
+                        self._safe_owned_path(backup, journal.parent)
+                        if not self._matches_version(backup, entry["before"]):
+                            if not self._matches_version(path, entry["before"]):
+                                raise InstallError(f"original migration backup is missing or changed: {path}")
+                            self._backup(Path(data["backup_root"]), path)
+                    for host, events in plan["events"].items():
+                        conflicts: list[str] = []
+                        self._event_destination_conflicts(host, events, conflicts)
+                        if conflicts:
+                            raise InstallError("; ".join(conflicts))
+                        target = self.user_root / "learnings" / host / "events.jsonl"
+                        self._safe_owned_path(target, self.user_root)
+                        prior = target.read_text(encoding="utf-8").splitlines() if target.is_file() else []
+                        known = {json.loads(line)["learning_id"] for line in prior if line.strip()}
+                        additions = [event["raw"] for event in events if event["learning_id"] not in known]
+                        if additions:
+                            _atomic_bytes(target, ("\n".join(prior + additions) + "\n").encode("utf-8"), 0o600)
+                    self._verify_transferred_events(plan)
+                    data["state"], data["phase"] = "APPLYING", "cleanup"
+                    self._journal_write(journal, data)
+                    for entry in paths:
+                        path = Path(entry["path"])
+                        if not self._matches_version(path, entry["after"]):
+                            if not self._matches_version(path, entry["before"]):
+                                raise InstallError(f"migration target changed: {path}")
+                            self._write_planned(path, entry["after"], int(entry["mode"]))
+                    # This durable boundary prevents any retry from deleting a new projection.
+                    data["phase"] = "install"
+                    self._journal_write(journal, data)
+                if data["phase"] == "install":
+                    self._verify_migration_native_state(release, data, child_required=False)
+                    self._verify_transferred_events(plan)
+                    installer = InstructionsInstaller(release, self.env)
+                    current = installer._old_record()
+                    child_pending = any(row["kind"] == "install" for row in
+                                        pending_status(self.state_root)["transactions"])
+                    if current is not None and current.get("package_root") == str(release) and not child_pending:
+                        # A lost parent receipt must not publish a second installation.
+                        installer.verify()
+                    else:
+                        installer.install()
+                    data["phase"] = "verify"
+                    self._journal_write(journal, data)
+                self._verify_migration_native_state(release, data, child_required=True)
+                self._verify_transferred_events(plan)
+                self.verify()
+                # The last pre-commit observation is deliberately repeated: a
+                # cooperative old collector or native writer can race a resume.
+                # It cannot make a noncooperating producer atomic after this check.
+                self._verify_migration_native_state(release, data, child_required=True)
+                self._verify_transferred_events(plan)
+                data.update(state="COMMITTED", phase="complete", committed_at=int(time.time()))
+                self._journal_write(journal, data)
+                return {"preview": False, "migration_id": journal.parent.name,
+                        "backup_root": data["backup_root"], "package_root": str(release), **plan}
+        except BaseException as exc:
+            data.update(state="NEEDS_RECOVERY", error=type(exc).__name__)
+            self._journal_write(journal, data)
+            raise
+
+    @_serialized
+    def migrate(self, apply: bool = False, yes: bool = False) -> dict[str, Any]:
+        pending = pending_status(self.state_root)["transactions"]
+        migrations = [item for item in pending if item["kind"] == "migrate"]
+        if len(migrations) > 1:
+            raise InstallError("multiple pending migration journals require explicit recovery")
+        if migrations:
+            journal = Path(migrations[0]["path"])
+            data = _read_json(journal)
+            self._validate_migration(journal, data)
+            if not apply:
+                return {"preview": True, **data["plan"], "recovery_journal": str(journal), "phase": data["phase"]}
+            if not yes:
+                raise InstallError("migration apply requires --yes")
+            return self._finish_migration(journal, data)
+        if apply:
+            try:
+                guard_pending(self.state_root)
+            except TransactionError as exc:
+                raise InstallError(str(exc)) from exc
+        plan, inputs = self._plan_migration()
+        if not apply:
+            return {"preview": True, **plan}
+        if not yes:
+            raise InstallError("migration apply requires --yes")
+        if plan["needs_action"]:
+            raise InstallError("legacy migration has unresolved ownership: " + "; ".join(plan["needs_action"]))
+        release, entries, digest = self._copy_release(self._package_files(), False)
+        paths = self._migration_paths(plan, release, inputs)
+        changed = [raw for raw, before in inputs.items() if not self._matches_version(Path(raw), before)]
+        if changed:
+            raise InstallError("migration input changed during planning; retry with a fresh plan: " + ", ".join(changed))
+        # Refuse an unlisted/user-edited shared destination before retiring anything.
+        prior = self._old_record()
+        retiring = set(plan["deletes"])
+        for raw, expected in self._expected_owned(release).items():
+            path = Path(raw)
+            self._safe_owned_path(path, self.bin_root if path.parent == self.bin_root else self.launch_root)
+            if raw not in retiring and path.exists() and _sha256(path) != expected and \
+                    _sha256(path) != self._owned_hash(prior, path):
+                raise InstallError(f"private install cannot replace user-owned paths: {path}")
+        migration_id = f"{int(time.time())}-{uuid.uuid4().hex[:12]}"
+        journal = self.runtime / "migrations" / migration_id / "journal.json"
+        backup_root = journal.parent / "backup"
+        path_inputs = {entry["path"] for entry in paths}
+        journal_data = {"schema_version": SCHEMA_VERSION, "owner": "installer", "kind": "migrate",
+                        "state": "PREPARED", "phase": "preflight", "plan": plan, "paths": paths,
+                        "inputs": {raw: ({k: v for k, v in before.items() if k != "bytes_b64"}
+                                          if raw in path_inputs else before)
+                                   for raw, before in inputs.items()},
+                        "prior_install": self._file_version(self.record_path),
+                        "release": {"package_root": str(release), "installed_files": entries, "release_digest": digest},
+                        "backup_root": str(backup_root), "created_at": int(time.time())}
+        self._journal_write(journal, journal_data)
+        return self._finish_migration(journal, journal_data)
+
+
+def main(argv: list[str] | None = None) -> int:
+    parser = argparse.ArgumentParser(prog="agent-bios")
+    parser.add_argument("--repo", help=argparse.SUPPRESS)
+    subparsers = parser.add_subparsers(dest="command", required=True)
+    install = subparsers.add_parser("install")
+    install.add_argument("--domains")
+    install.add_argument("--dry-run", action="store_true")
+    install.add_argument("--with", dest="with_capabilities")
+    onboard = subparsers.add_parser("onboard")
+    onboard.add_argument("--domains")
+    onboard.add_argument("--dry-run", action="store_true")
+    onboard.add_argument("--with", dest="with_capabilities")
+    for command in (install, onboard):
+        interaction = command.add_mutually_exclusive_group()
+        interaction.add_argument("--interactive", action="store_true", help="open the Textual installation wizard (default)")
+        interaction.add_argument("--non-interactive", action="store_true", help="run without the wizard and return JSON")
+        command.add_argument("--instructions", "--corpus", choices=("all", "none", "selected"),
+                             help="active instructions policy; none retains library assets privately but delivers no instructions")
+        command.add_argument("--select", action="append", default=[], metavar="TARGET",
+                             help="package/domain/item target; repeat for multiple targets")
+    subparsers.add_parser("verify")
+    subparsers.add_parser("status")
+    uninstall = subparsers.add_parser("uninstall")
+    uninstall.add_argument("--dry-run", action="store_true")
+    migrate = subparsers.add_parser("migrate")
+    migrate.add_argument("--dry-run", action="store_true")
+    migrate.add_argument("--apply", action="store_true")
+    migrate.add_argument("--yes", action="store_true")
+    reset = subparsers.add_parser("reset")
+    reset.add_argument("--dry-run", action="store_true")
+    reset.add_argument("--apply", action="store_true")
+    reset.add_argument("--yes", action="store_true")
+    reset.add_argument("--expected-revision", help="reset preview generation to accept")
+    args = parser.parse_args(argv)
+    installer = InstructionsInstaller(Path(args.repo) if args.repo else Path(__file__).resolve().parent.parent)
+    interactive = False
+    try:
+        if args.command in {"install", "onboard"}:
+            if args.with_capabilities:
+                raise InstallError("use --interactive to select dependency installation; --with is legacy-only")
+            interactive = not args.non_interactive
+            if args.select and args.instructions != "selected":
+                raise InstallError("--select requires --instructions selected")
+            if interactive and args.domains is not None:
+                raise InstallError("--domains is a compatibility selection flag; use --non-interactive or choose instructions in the wizard")
+            if interactive:
+                if not sys.stdin.isatty() or not sys.stdout.isatty():
+                    raise InstallError("interactive installation needs an input/output terminal; use --non-interactive for automation or app tool calls")
+                if os.environ.get("TERM") == "dumb":
+                    raise InstallError("this terminal cannot display the Textual wizard; use a capable terminal or --non-interactive")
+                try:
+                    from .instructions_ui_runtime import activate_ui_runtime
+                except ImportError:
+                    from instructions_ui_runtime import activate_ui_runtime
+                activate_ui_runtime(installer.repo)
+                try:
+                    from .instructions_setup_ui import run_setup_ui
+                except ImportError:
+                    from instructions_setup_ui import run_setup_ui
+                initial = None
+                if args.instructions is not None:
+                    mode = "none" if args.instructions == "none" else "selected"
+                    targets = ["all"] if args.instructions == "all" else list(args.select) if args.instructions == "selected" else []
+                    initial = {"selection_mode": mode, "targets": targets, "dependencies": [],
+                               "app_bridge": False, "import_paths": [], "project_roots": []}
+                result = run_setup_ui(installer, dry_run=args.dry_run, initial_plan=initial)
+            else:
+                mode = "none" if args.instructions == "none" else "selected" if args.instructions else None
+                targets = ["all"] if args.instructions == "all" else args.select if args.instructions == "selected" else None
+                result = installer.install(args.domains, args.dry_run, selection_mode=mode, targets=targets)
+        elif args.command == "verify":
+            result = installer.verify()
+        elif args.command == "status":
+            result = installer.status()
+        elif args.command == "uninstall":
+            result = installer.uninstall(args.dry_run)
+        elif args.command == "reset":
+            result = installer.reset(apply=args.apply and not args.dry_run, yes=args.yes,
+                                     expected_revision=args.expected_revision)
+        else:
+            result = installer.migrate(apply=args.apply and not args.dry_run, yes=args.yes)
+        if interactive:
+            try:
+                from .instructions_setup import format_setup_result
+            except ImportError:
+                from instructions_setup import format_setup_result
+            print(format_setup_result(result, language=result.get("ui_language", "en")))
+        else:
+            print(json.dumps(result, ensure_ascii=False, indent=2, sort_keys=True))
+        return 1 if result.get("dependency_failed") or result.get("extras_error") or result.get("installation_error") or result.get("error") else 0
+    except (InstallError, RuntimeError, ValueError, OSError) as exc:
+        message = str(exc)
+        language = getattr(exc, "ui_language", "en")
+        if interactive and language != "en":
+            try:
+                from .instructions_setup_i18n import translate
+            except ImportError:
+                from instructions_setup_i18n import translate
+            message = translate(language, "Setup could not finish. Details: {detail}", detail=message)
+        print(f"instructions-install: {message}", file=sys.stderr)
+        return 1
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())