agent-bios 0.18.0 → 0.19.1

package/compose/corpus_setup_cli.py

@@ -0,0 +1,585 @@
+"""JSON setup adapter with read-only reviews and durable, non-replaying receipts."""
+from __future__ import annotations
+
+import argparse
+import contextlib
+import hashlib
+import json
+import os
+from pathlib import Path
+import platform
+import re
+import shutil
+import socket
+import subprocess
+import sys
+import tempfile
+import time
+from typing import Any, Callable
+
+if __name__ == "__main__":
+    sys.dont_write_bytecode = True
+
+try:
+    from corpus_install import CorpusInstaller
+    from corpus_setup import SetupController, SetupError, format_setup_result, review_summary
+    from corpus_setup_i18n import LANGUAGES, choice_label, dependency_display, detect_language, translate
+    from corpus_transaction import confirmed_release, reject_symlink_ancestors, transaction_lock, try_transaction_lock
+except ImportError:
+    from .corpus_install import CorpusInstaller
+    from .corpus_setup import SetupController, SetupError, format_setup_result, review_summary
+    from .corpus_setup_i18n import LANGUAGES, choice_label, dependency_display, detect_language, translate
+    from .corpus_transaction import confirmed_release, reject_symlink_ancestors, transaction_lock, try_transaction_lock
+
+
+SCHEMA_VERSION = 1
+IDENTIFIER = re.compile(r"[0-9a-f]{64}\Z")
+LANGUAGE_IDS = {identifier for _label, identifier in LANGUAGES}
+INCIDENTAL_ENV = {
+    **dict.fromkeys(("_", "SHLVL"), "shell command bookkeeping does not select setup effects"),
+    **dict.fromkeys(("PWD", "OLDPWD"), "the actual working directory is bound separately in the review context"),
+    **dict.fromkeys(("TERM", "COLORTERM", "TERM_PROGRAM", "TERM_PROGRAM_VERSION", "TERM_SESSION_ID", "SHELL_SESSION_ID",
+                     "COLUMNS", "LINES", "NO_COLOR", "FORCE_COLOR"),
+                    "terminal presentation and terminal-session identity are not installation authority"),
+    **dict.fromkeys(("LC_ALL", "LC_MESSAGES", "LC_CTYPE", "LC_NUMERIC", "LC_TIME", "LC_COLLATE", "LC_MONETARY", "LANG", "LANGUAGE"),
+                    "display locale may change between calls; the chosen review language is bound explicitly"),
+    **dict.fromkeys(("TMPDIR", "TMP", "TEMP"),
+                    "scratch allocation may change between calls; package and private destinations are bound separately"),
+    **dict.fromkeys(("PYTHONDONTWRITEBYTECODE", "PYTHONUNBUFFERED"),
+                    "Python cache and output policy do not select installation targets or recipes"),
+    **dict.fromkeys(("CODEX_THREAD_ID", "CODEX_TASK_ID", "CLAUDE_CODE_SESSION_ID", "CLAUDE_SESSION_ID"),
+                    "setup does not activate a task and may continue from another task on the same machine and private roots"),
+}
+
+
+def _canonical(value: Any) -> bytes:
+    return json.dumps(value, sort_keys=True, ensure_ascii=False, separators=(",", ":")).encode("utf-8")
+
+
+def _digest(value: Any) -> str:
+    return hashlib.sha256(_canonical(value)).hexdigest()
+
+
+def _identity() -> dict[str, Any]:
+    hardware = ""
+    method = "host-filesystem"
+    if sys.platform.startswith("linux"):
+        for path in (Path("/etc/machine-id"), Path("/var/lib/dbus/machine-id")):
+            try:
+                candidate = path.read_text(encoding="ascii").strip()
+            except (OSError, UnicodeError):
+                continue
+            if re.fullmatch(r"[a-fA-F0-9]{32}", candidate):
+                hardware, method = candidate, "machine-id"
+                break
+    elif sys.platform == "darwin":
+        try:
+            result = subprocess.run(["/usr/sbin/ioreg", "-rd1", "-c", "IOPlatformExpertDevice"],
+                                    stdin=subprocess.DEVNULL, capture_output=True, text=True, timeout=5)
+            match = re.search(r'"IOPlatformUUID"\s*=\s*"([A-Fa-f0-9-]+)"', result.stdout)
+            if result.returncode == 0 and match:
+                hardware, method = match[1], "platform-uuid"
+        except (OSError, subprocess.SubprocessError):
+            pass
+    host = socket.gethostname()
+    if not hardware:
+        root = Path("/").stat()
+        hardware = f"{host}:{root.st_dev}:{root.st_ino}"
+    return {"machine_id": hashlib.sha256(hardware.encode()).hexdigest(), "identity_method": method,
+            "hostname": host, "platform": platform.system(), "architecture": platform.machine(),
+            "uid": os.getuid() if hasattr(os, "getuid") else None}
+
+
+def _process_identity(pid: int) -> str | None:
+    if sys.platform.startswith("linux"):
+        try:
+            fields = (Path("/proc") / str(pid) / "stat").read_text().rsplit(")", 1)[1].split()
+            return fields[19]
+        except (OSError, IndexError):
+            return None
+    try:
+        result = subprocess.run(["/bin/ps", "-p", str(pid), "-o", "lstart="], stdin=subprocess.DEVNULL,
+                                capture_output=True, text=True, timeout=3,
+                                env={**os.environ, "LC_ALL": "C", "TZ": "UTC"})
+        return result.stdout.strip() if result.returncode == 0 and result.stdout.strip() else None
+    except (OSError, subprocess.SubprocessError):
+        return None
+
+
+def _read_json(path: Path) -> dict[str, Any]:
+    reject_symlink_ancestors(path)
+    if not path.is_file() or path.stat().st_size > 8 * 1024 * 1024:
+        raise SetupError(f"missing, unsafe, or oversized setup JSON: {path}")
+    try:
+        value = json.loads(path.read_text(encoding="utf-8"))
+    except (OSError, ValueError) as exc:
+        raise SetupError(f"cannot read setup JSON: {path}: {exc}") from exc
+    if not isinstance(value, dict):
+        raise SetupError("setup JSON must be an object")
+    return value
+
+
+def _write_json(path: Path, value: dict[str, Any]) -> None:
+    reject_symlink_ancestors(path)
+    path.parent.mkdir(parents=True, exist_ok=True, mode=0o700)
+    descriptor, raw = tempfile.mkstemp(prefix=".setup-receipt-", dir=path.parent)
+    temporary = Path(raw)
+    try:
+        with os.fdopen(descriptor, "wb") as output:
+            output.write(_canonical(value) + b"\n")
+            output.flush()
+            os.fsync(output.fileno())
+        temporary.chmod(0o600)
+        os.replace(temporary, path)
+        directory = os.open(path.parent, os.O_RDONLY)
+        try:
+            os.fsync(directory)
+        finally:
+            os.close(directory)
+    finally:
+        temporary.unlink(missing_ok=True)
+
+
+def _review_identity(review: dict[str, Any]) -> str:
+    return _digest({key: value for key, value in review.items() if key != "review_id"})
+
+
+def _file_identity(path: Path) -> dict[str, Any]:
+    resolved = path.resolve()
+    if not resolved.is_file():
+        raise SetupError(f"reviewed dependency executable is unavailable: {path}")
+    digest = hashlib.sha256()
+    with resolved.open("rb") as source:
+        for chunk in iter(lambda: source.read(1024 * 1024), b""):
+            digest.update(chunk)
+    return {"path": str(resolved), "sha256": digest.hexdigest(), "size_bytes": resolved.stat().st_size}
+
+
+class SetupService:
+    """Bind shared-engine reviews to a machine, then record every effect boundary."""
+
+    def __init__(self, installer: Any, *, controller_factory: Callable | None = None,
+                 identity: Callable[[], dict[str, Any]] = _identity,
+                 progress_hook: Callable[[dict[str, Any]], None] | None = None):
+        self.installer = installer
+        self.controller_factory = controller_factory or (lambda: SetupController(installer))
+        self.identity = identity
+        self.progress_hook = progress_hook
+
+    def context(self) -> dict[str, Any]:
+        env = self.installer.env
+        home = Path(env.get("HOME", str(Path.home()))).expanduser().resolve()
+        state = Path(getattr(self.installer, "state_root", env.get("AGENT_BIOS_STATE_DIR", home / ".local/share/agent-bios"))).expanduser().resolve()
+        user = Path(getattr(self.installer, "user_root", env.get("AGENT_BIOS_CORPUS_DIR", home / ".config/agent-bios/corpus"))).expanduser().resolve()
+        return {**self.identity(), "home": str(home), "state_dir": str(state), "user_dir": str(user),
+                "codex_dir": str(Path(env.get("CODEX_HOME", home / ".codex")).expanduser().resolve()),
+                "claude_dir": str(Path(env.get("CLAUDE_CONFIG_DIR", home / ".claude")).expanduser().resolve()),
+                "package_root": str(Path(self.installer.repo).resolve()), "cwd": str(Path.cwd().resolve()),
+                "python": {"executable": str(Path(sys.executable).resolve()), "version": platform.python_version()},
+                "environment_digest": _digest({key: value for key, value in env.items() if key not in INCIDENTAL_ENV})}
+
+    def _language(self, language: str | None) -> str:
+        value = language or detect_language(self.installer.env)
+        if value not in LANGUAGE_IDS:
+            raise SetupError("language must be en, ko, or ja")
+        return value
+
+    def _assert_owner(self, review: dict[str, Any]) -> None:
+        current = self.context()
+        if any(review["context"].get(key) != current.get(key) for key in ("machine_id", "uid", "home", "state_dir", "user_dir")):
+            raise SetupError("review receipt belongs to another machine or private root context")
+
+    def start(self, language: str | None = None) -> dict[str, Any]:
+        package = Path(self.installer.repo).resolve()
+        cli = ["/bin/bash", str(package / "install.sh")]
+        return {"schema_version": SCHEMA_VERSION, "kind": "agent-bios-setup-start",
+                "languages": [{"label": label, "id": identifier} for label, identifier in LANGUAGES],
+                "suggested_language": detect_language(self.installer.env), "language": self._language(language),
+                "context": self.context(), "guide_path": str(package / "compose/setup/START.md"),
+                "cli_argv": cli, "setup_argv": [*cli, "setup"]}
+
+    def inspect(self, language: str | None = None) -> dict[str, Any]:
+        language = self._language(language)
+        controller = self.controller_factory()
+        retained = getattr(controller, "retained_corpus", [])
+        return {"schema_version": SCHEMA_VERSION, "kind": "agent-bios-setup-inspection", "context": self.context(),
+                "language": language, "dependencies": controller.dependencies, "choices": controller.choices,
+                "retained_corpus": retained,
+                "default_plan": controller.default_plan(),
+                "display": {"dependencies": [dependency_display(language, row) for row in controller.dependencies],
+                            "retained_corpus": [{**row, "label": translate(language, row["label"])} for row in retained],
+                            "choices": [{**row, "label": choice_label(language, row)} for row in controller.choices]}}
+
+    def discover(self, roots: list[str]) -> dict[str, Any]:
+        if not isinstance(roots, list) or not all(isinstance(root, str) and Path(root).is_absolute() and Path(root).is_dir() for root in roots):
+            raise SetupError("project roots must be existing absolute directories")
+        found = self.installer.setup_discover(roots)
+        return {"schema_version": SCHEMA_VERSION, "kind": "agent-bios-setup-discovery", "context": self.context(),
+                "sources": found["sources"], "omitted": found.get("omitted", [])}
+
+    def _actions(self, preview: dict[str, Any]) -> list[dict[str, Any]]:
+        identities = []
+        for action in preview["plan"]["dependency_actions"]:
+            command = action["argv"][0]
+            path = shutil.which(command, path=self.installer.env.get("PATH", os.defpath))
+            if not path:
+                raise SetupError(f"reviewed dependency executable is unavailable: {command}")
+            identities.append({"id": action["id"], **_file_identity(Path(path))})
+        return identities
+
+    def plan(self, value: dict[str, Any], language: str | None = None, *, continuation: dict[str, Any] | None = None) -> dict[str, Any]:
+        language = self._language(language)
+        controller = self.controller_factory()
+        if not isinstance(value, dict) or set(value) != controller.FIELDS:
+            raise SetupError("plan input must contain exactly the six setup choice fields; derived commands are not input")
+        preview = controller.preview(value)
+        review = {"schema_version": SCHEMA_VERSION, "kind": "agent-bios-setup-review", "context": self.context(),
+                  "language": language, "preview": preview, "action_inputs": self._actions(preview),
+                  "summary": review_summary(preview["plan"], controller.dependencies, controller.choices, language)}
+        if continuation is not None:
+            review["continuation"] = continuation
+        review["review_id"] = _review_identity(review)
+        return review
+
+    def _receipt_path(self, identifier: str) -> Path:
+        if not isinstance(identifier, str) or not IDENTIFIER.fullmatch(identifier):
+            raise SetupError("review id must be an engine-issued 64-character identifier")
+        return Path(self.context()["state_dir"]) / "setup/receipts" / f"{identifier}.json"
+
+    def _receipt(self, identifier: str) -> dict[str, Any] | None:
+        path = self._receipt_path(identifier)
+        reject_symlink_ancestors(path)
+        if not path.exists():
+            return None
+        receipt = _read_json(path)
+        fingerprint = _digest({key: value for key, value in receipt.items() if key != "receipt_revision"})
+        if receipt.get("schema_version") != SCHEMA_VERSION or receipt.get("review_id") != identifier \
+                or receipt.get("receipt_revision") != fingerprint or not isinstance(receipt.get("operations"), dict) \
+                or receipt.get("state") not in {"running", "complete", "partial", "unknown"}:
+            raise SetupError("setup receipt integrity check failed")
+        self._validate_envelope(receipt.get("review"), identifier)
+        return receipt
+
+    def _save(self, receipt: dict[str, Any]) -> None:
+        receipt["updated_at"] = time.time()
+        receipt["receipt_revision"] = _digest({key: value for key, value in receipt.items() if key != "receipt_revision"})
+        _write_json(self._receipt_path(receipt["review_id"]), receipt)
+
+    @staticmethod
+    def _validate_envelope(review: Any, expected: str) -> None:
+        fields = {"schema_version", "kind", "context", "language", "preview", "action_inputs", "summary", "review_id"}
+        if not isinstance(review, dict) or set(review) not in (fields, fields | {"continuation"}) \
+                or review.get("schema_version") != SCHEMA_VERSION or review.get("kind") != "agent-bios-setup-review":
+            raise SetupError("apply requires the entire engine-issued review envelope")
+        if not isinstance(review["context"], dict) or not isinstance(review["preview"], dict) \
+                or not isinstance(review["language"], str) or review["language"] not in LANGUAGE_IDS \
+                or not isinstance(review["summary"], str) or not isinstance(review["action_inputs"], list):
+            raise SetupError("review envelope fields have invalid types")
+        if not isinstance(expected, str) or not IDENTIFIER.fullmatch(expected) or review.get("review_id") != expected \
+                or _review_identity(review) != expected:
+            raise SetupError("review identity does not match the exact reviewed envelope")
+
+    def _current_review(self, review: dict[str, Any]) -> dict[str, Any]:
+        if "continuation" in review:
+            continuation = review["continuation"]
+            if not isinstance(continuation, dict) or set(continuation) != {"review_id", "receipt_revision", "reuse_installation"}:
+                raise SetupError("invalid setup continuation")
+            resumed = self.resume(continuation["review_id"], review["language"])
+            if resumed.get("review") is None:
+                raise SetupError("setup continuation requires inspection of prior effects")
+            return resumed["review"]
+        value = review.get("preview", {}).get("plan", {})
+        plan = {key: value[key] for key in SetupController.FIELDS if key in value}
+        return self.plan(plan, review["language"])
+
+    def handoff(self) -> dict[str, Any]:
+        context = self.context()
+        result = {"verification": "deferred", "runtime_verified": None, "package_verified": None, "package_root": None, "release_digest": None, "cli_argv": None, "setup_argv": None,
+                  "guide_path": None, "helper_registered": None, "helper_verified": None, "helper_argv": None,
+                  "helper_usable": None,
+                  "native_discovery": "unverified", "task_activation": {"performed": False, "existing_tasks": "unchanged", "default": "not_requested"},
+                  "environment": {"HOME": context["home"], "AGENT_BIOS_STATE_DIR": context["state_dir"],
+                                  "AGENT_BIOS_CORPUS_DIR": context["user_dir"], "CODEX_HOME": context["codex_dir"],
+                                  "CLAUDE_CONFIG_DIR": context["claude_dir"]}, "needs_action": []}
+        try:
+            with try_transaction_lock(Path(context["state_dir"])) as acquired:
+                if not acquired:
+                    result["needs_action"].append("private state verification is deferred: another operation holds the lock or synchronization is unavailable; retry setup status")
+                    return result
+                result.update(verification="checked", runtime_verified=False, package_verified=False,
+                              helper_registered=False, helper_verified=False, helper_usable=False)
+                return self._verified_handoff(context, result)
+        except (OSError, RuntimeError, ValueError) as exc:
+            result["needs_action"].append(str(exc))
+            return result
+
+    def _verified_handoff(self, context: dict[str, Any], result: dict[str, Any]) -> dict[str, Any]:
+        record = Path(context["state_dir"]) / "runtime/private-install.json"
+        pending = False
+        if record.is_file():
+            try:
+                reject_symlink_ancestors(record)
+                release = confirmed_release(Path(context["state_dir"]))
+                result.update(package_verified=True, package_root=str(release), release_digest=release.name,
+                              cli_argv=["/bin/bash", str(release / "install.sh")],
+                              setup_argv=["/bin/bash", str(release / "install.sh"), "setup"], guide_path=str(release / "compose/setup/START.md"))
+                result["environment"].update(AGENT_BIOS_PACKAGE_ROOT=str(release), AGENT_BIOS_PRIVATE_CORPUS="1", AGENT_BIOS_LEGACY_INSTALL="0")
+            except (OSError, RuntimeError, ValueError) as exc:
+                result["needs_action"].append(str(exc))
+            try:
+                verification = self.installer.verify()
+                result["runtime_verified"] = verification.get("stored") is True
+                if not result["runtime_verified"]:
+                    result["needs_action"].append("private runtime verification did not confirm installation")
+            except (OSError, RuntimeError, ValueError) as exc:
+                result["needs_action"].append(str(exc))
+            try:
+                pending = bool(self.installer.status().get("transactions"))
+                if pending:
+                    result["needs_action"].append("private installation has a pending transaction")
+            except (OSError, RuntimeError, ValueError) as exc:
+                pending = True
+                result["needs_action"].append(str(exc))
+        try:
+            manager = self.installer._app_manager()
+            bridge = manager.managed_status()
+            result["helper_registered"] = bool(bridge.get("registered"))
+            result["needs_action"].extend(bridge.get("needs_action", []))
+            if bridge.get("registered") and not bridge.get("needs_action"):
+                helper = manager.target / "scripts/bridge.py"
+                result.update(helper_verified=True, helper_argv=[sys.executable, str(helper)])
+            if "AGENT_LAUNCH_VENV" in self.installer.env:
+                result["environment"]["AGENT_LAUNCH_VENV"] = self.installer.env["AGENT_LAUNCH_VENV"]
+        except (OSError, RuntimeError, ValueError) as exc:
+            result["needs_action"].append(str(exc))
+        result["helper_usable"] = result["helper_verified"] and result["package_verified"] and not pending
+        return result
+
+    def status(self, identifier: str, language: str | None = None, *, replayed: bool = False) -> dict[str, Any]:
+        receipt = self._receipt(identifier)
+        result = receipt.get("result") or {} if receipt else {}
+        language = self._language(language or (receipt or {}).get("review", {}).get("language"))
+        state = receipt["state"] if receipt else "missing"
+        if state == "running":
+            owner = receipt.get("owner", {})
+            token = _process_identity(owner.get("pid", -1)) if isinstance(owner.get("pid"), int) else None
+            same_machine = receipt["review"]["context"].get("machine_id") == self.context()["machine_id"]
+            if not same_machine or token is None or token != owner.get("process_identity"):
+                state = "unknown"
+        return {"schema_version": SCHEMA_VERSION, "kind": "agent-bios-setup-status", "review_id": identifier,
+                "state": state, "receipt_path": str(self._receipt_path(identifier)), "receipt": receipt,
+                "result": result, "summary": format_setup_result(result, language, interface="conversation"), "handoff": self.handoff(),
+                "replayed": replayed, "context": self.context(), "language": language}
+
+    def resume(self, identifier: str, language: str | None = None) -> dict[str, Any]:
+        response = self.status(identifier, language)
+        response.update(remaining_plan=None, review=None, needs_action=[])
+        receipt = response["receipt"]
+        if receipt is None:
+            response["needs_action"] = ["setup receipt was not found"]
+            return response
+        self._assert_owner(receipt["review"])
+        chain = []
+        while receipt.get("continued_by"):
+            if receipt["review_id"] in chain or len(chain) >= 32:
+                raise SetupError("setup continuation chain is invalid")
+            chain.append(receipt["review_id"])
+            child = self._receipt(receipt["continued_by"])
+            if child is None or child["review"].get("continuation", {}).get("review_id") != receipt["review_id"]:
+                raise SetupError("setup continuation receipt is missing or inconsistent")
+            self._assert_owner(child["review"])
+            receipt = child
+            response = self.status(receipt["review_id"], language)
+            response.update(remaining_plan=None, review=None, needs_action=[], resumed_from=identifier)
+        if receipt["state"] == "complete":
+            return response
+        if receipt["state"] == "running":
+            response["needs_action"] = ["setup is running or its interruption is unconfirmed; inspect its recorded progress before retrying"]
+            return response
+        unsafe = [name for name, operation in receipt.get("operations", {}).items()
+                  if operation.get("state") in {"running", "failed", "unknown"}]
+        if unsafe or receipt["state"] == "unknown":
+            response["needs_action"] = ["inspect effects before retrying: " + ", ".join(unsafe or ["unknown operation"])]
+            response["inspection"] = self.inspect(response["language"])
+            return response
+        original = receipt["review"]["preview"]["plan"]
+        plan = {key: original[key] for key in SetupController.FIELDS}
+        completed = {name for name, operation in receipt.get("operations", {}).items() if operation.get("state") == "completed"}
+        controller = self.controller_factory()
+        inventory = {row["id"]: row for row in controller.dependencies}
+        remaining = []
+        for name in plan["dependencies"]:
+            row = inventory.get(name)
+            if row is None:
+                response["needs_action"].append(f"requested dependency is absent from the current inventory: {name}")
+            elif "dependency:" + name in completed:
+                if row.get("status") != "available":
+                    response["needs_action"].append(f"completed dependency is not currently available: {name}")
+            elif row.get("status") == "available":
+                continue
+            elif not row.get("install_argv"):
+                response["needs_action"].append(f"requested dependency is still missing and has no current installation recipe: {name}")
+            else:
+                remaining.append(name)
+        response["inspection"] = {"dependencies": controller.dependencies, "choices": controller.choices}
+        if response["needs_action"]:
+            return response
+        plan["dependencies"] = remaining
+        reuse = "install" in completed
+        if reuse:
+            if not response["handoff"]["runtime_verified"] or response["handoff"]["needs_action"]:
+                response["needs_action"] = ["verify the completed private installation before continuing"]
+                return response
+            plan["selection_mode"], plan["targets"] = None, None
+        if "extras" in completed:
+            plan["app_bridge"], plan["import_paths"], plan["project_roots"] = False, [], []
+        continuation = {"review_id": receipt["review_id"], "receipt_revision": receipt["receipt_revision"], "reuse_installation": reuse}
+        response["remaining_plan"] = plan
+        candidate = self.plan(plan, response["language"], continuation=continuation)
+        if reuse:
+            completed_install = receipt["operations"]["install"]["event"].get("installation", {})
+            completed_digest = completed_install.get("record", {}).get("release_digest") or completed_install.get("release_digest")
+            source_digest = candidate["preview"]["installation"].get("release_digest")
+            if source_digest != response["handoff"].get("release_digest") or completed_digest != source_digest:
+                response["needs_action"] = ["source or installed package changed after partial setup; create a fresh installation plan"]
+                return response
+        response["review"] = candidate
+        return response
+
+    def apply(self, review: dict[str, Any], expected_review_id: str, *, yes: bool = False) -> dict[str, Any]:
+        if yes is not True:
+            raise SetupError("apply requires explicit --yes acknowledgment of the exact reviewed plan")
+        review = json.loads(json.dumps(review, ensure_ascii=False))
+        self._validate_envelope(review, expected_review_id)
+        existing = self._receipt(expected_review_id)
+        if existing is not None:
+            if existing["review"] != review:
+                raise SetupError("review differs from the owned receipt")
+            self._assert_owner(review)
+            return self.status(expected_review_id, replayed=True)
+        if self._current_review(review) != review:
+            raise SetupError("review is stale or belongs to another execution context; create a fresh plan")
+        state_root = Path(self.context()["state_dir"])
+        with transaction_lock(state_root):
+            if self._receipt(expected_review_id) is not None:
+                return self.status(expected_review_id, replayed=True)
+            if self._current_review(review) != review:
+                raise SetupError("review changed while waiting for the setup lock; create a fresh plan")
+            receipt = {"schema_version": SCHEMA_VERSION, "kind": "agent-bios-setup-receipt", "review_id": expected_review_id,
+                       "review": review, "state": "running", "created_at": time.time(), "operations": {}, "progress": [], "result": None,
+                       "owner": {"pid": os.getpid(), "process_identity": _process_identity(os.getpid())}}
+            self._save(receipt)
+            if review.get("continuation"):
+                parent = self._receipt(review["continuation"]["review_id"])
+                if parent is None or parent["receipt_revision"] != review["continuation"]["receipt_revision"] or parent.get("continued_by"):
+                    raise SetupError("setup continuation was consumed or changed before execution")
+                parent["continued_by"] = expected_review_id
+                self._save(parent)
+            def progress(event: dict[str, Any]) -> None:
+                stage, phase = event.get("stage"), event.get("phase")
+                key = "dependency:" + str(event.get("dependency", event.get("id", ""))) if stage == "dependency" else stage
+                if phase == "started" and stage == "dependency":
+                    actual = self._actions({"plan": {"dependency_actions": [action for action in review["preview"]["plan"]["dependency_actions"] if action["id"] == event["dependency"]]}})
+                    expected = [row for row in review["action_inputs"] if row["id"] == event["dependency"]]
+                    if actual != expected:
+                        raise SetupError("dependency executable changed after review")
+                if stage in {"dependency", "install", "extras"}:
+                    receipt["operations"][key] = {"state": {"started": "running", "completed": "completed", "failed": "failed", "not_started": "not_started"}.get(phase, "not_started"),
+                                                  "event": event, "at": time.time()}
+                receipt["progress"].append(event)
+                self._save(receipt)
+                if self.progress_hook:
+                    self.progress_hook(event)
+            try:
+                controller = self.controller_factory()
+                plan = {key: review["preview"]["plan"][key] for key in SetupController.FIELDS}
+                result = controller.apply(plan, preview=review["preview"], progress=progress,
+                                          reuse_installation=bool(review.get("continuation", {}).get("reuse_installation")))
+                receipt["result"] = result
+                active = any(operation["state"] == "running" for operation in receipt["operations"].values())
+                receipt["state"] = "complete" if result.get("applied") else "unknown" if active else "partial"
+            except BaseException as exc:
+                active = any(operation["state"] == "running" for operation in receipt["operations"].values())
+                receipt["state"] = "unknown" if active else "partial"
+                receipt["error"] = {"type": type(exc).__name__, "message": str(exc)}
+                receipt["result"] = {"applied": False, "installation_error": str(exc) or type(exc).__name__,
+                                     "dependency_results": [operation["event"] for key, operation in receipt["operations"].items() if key.startswith("dependency:") and "returncode" in operation["event"]]}
+            self._save(receipt)
+            return self.status(expected_review_id)
+
+
+class _Parser(argparse.ArgumentParser):
+    def error(self, message):
+        raise SetupError(message)
+
+
+def _input(source: str) -> dict[str, Any]:
+    if source != "-":
+        return _read_json(Path(source).expanduser())
+    if sys.stdin.isatty():
+        raise SetupError("--input - requires piped JSON; use a review file in a terminal")
+    body = sys.stdin.read(8 * 1024 * 1024 + 1)
+    if len(body) > 8 * 1024 * 1024:
+        raise SetupError("setup input is too large")
+    value = json.loads(body)
+    if not isinstance(value, dict):
+        raise SetupError("setup input must be a JSON object")
+    return value
+
+
+def main(argv: list[str] | None = None) -> int:
+    args = None
+    presentation_language = None
+    try:
+        parser = _Parser(prog="agent-bios setup", add_help=False)
+        parser.add_argument("--repo", type=Path, default=Path(__file__).resolve().parents[1])
+        parser.add_argument("--help", action="store_true")
+        sub = parser.add_subparsers(dest="command")
+        for name in ("start", "inspect"):
+            command = sub.add_parser(name, add_help=False)
+            command.add_argument("--language", choices=sorted(LANGUAGE_IDS))
+        discover = sub.add_parser("discover", add_help=False)
+        discover.add_argument("--project-root", action="append", default=[])
+        plan = sub.add_parser("plan", add_help=False)
+        plan.add_argument("--input", required=True)
+        plan.add_argument("--language", choices=sorted(LANGUAGE_IDS))
+        apply = sub.add_parser("apply", add_help=False)
+        apply.add_argument("--input", required=True)
+        apply.add_argument("--review-id", required=True)
+        apply.add_argument("--yes", action="store_true")
+        for name in ("status", "resume"):
+            command = sub.add_parser(name, add_help=False)
+            command.add_argument("--review-id", required=True)
+            command.add_argument("--language", choices=sorted(LANGUAGE_IDS))
+        raw = list(sys.argv[1:] if argv is None else argv)
+        args = parser.parse_args([value for value in raw if value != "--json"])
+        if args.help:
+            result = {"schema_version": SCHEMA_VERSION, "commands": ["start", "inspect", "discover", "plan", "apply", "status", "resume"], "format": "JSON"}
+        else:
+            service = SetupService(CorpusInstaller(args.repo))
+            command = args.command or "start"
+            with contextlib.redirect_stdout(sys.stderr):
+                if command == "start": result = service.start(getattr(args, "language", None))
+                elif command == "inspect": result = service.inspect(args.language)
+                elif command == "discover": result = service.discover(args.project_root)
+                elif command == "plan": result = service.plan(_input(args.input), args.language)
+                elif command == "apply":
+                    envelope = _input(args.input)
+                    selected_language = envelope.get("language")
+                    if isinstance(selected_language, str) and selected_language in LANGUAGE_IDS:
+                        presentation_language = selected_language
+                    result = service.apply(envelope, args.review_id, yes=args.yes)
+                elif command == "status": result = service.status(args.review_id, args.language)
+                else: result = service.resume(args.review_id, args.language)
+        print(json.dumps(result, ensure_ascii=False, indent=2, sort_keys=True))
+        return 1 if (args.command == "apply" and result.get("state") != "complete") else 0
+    except (OSError, RuntimeError, ValueError, TypeError, KeyError) as exc:
+        language = presentation_language or getattr(args, "language", None) or detect_language(os.environ)
+        print(json.dumps({"schema_version": SCHEMA_VERSION, "kind": "agent-bios-setup-error", "ok": False,
+                          "error": {"type": type(exc).__name__, "message": str(exc)},
+                          "summary": translate(language, "Setup could not finish. Details: {detail}", detail=str(exc))}, ensure_ascii=False))
+        return 2
+
+
+if __name__ == "__main__":
+    raise SystemExit(main())