agenr 0.9.24 → 0.9.25

package/CHANGELOG.md

@@ -1,5 +1,18 @@
 # Changelog
 
+## 0.9.25 (2026-02-28)
+
+### Bug Fixes
+- Health command now reads conflict data from conflict_log table instead of
+  the never-incremented entries.contradictions column. Shows total conflicts,
+  breakdown by relation type, pending count, and auto-resolved count. (#334)
+- High-confidence coexists conflicts (>0.8) now auto-resolve instead of being
+  flagged for review. Previously, any coexists involving decision or lesson
+  types was flagged regardless of confidence, creating a false backlog. (#335)
+- OpenClaw plugin: system messages (e.g. subagent completions) now classify
+  as trivial for mid-session recall, preventing wasted embedding API calls
+  on garbage queries containing session IDs and boilerplate text.
+
 ## 0.9.24 (2026-02-28)
 
 ### Bug Fixes

package/dist/cli-main.js

@@ -5486,6 +5486,38 @@ async function getConflictStats(db) {
     userResolved: Number.isFinite(userResolvedRaw) ? userResolvedRaw : 0
   };
 }
+async function getConflictLogSummary(db) {
+  const result = await db.execute({
+    sql: `
+      SELECT relation, resolution, COUNT(*) as cnt
+      FROM conflict_log
+      GROUP BY relation, resolution
+    `
+  });
+  const byRelation = {};
+  const byResolution = {};
+  let total = 0;
+  for (const row of result.rows) {
+    const record = row;
+    const relation = toStringValue(record.relation);
+    const resolution = toStringValue(record.resolution);
+    const countRaw = toNumber(record.cnt);
+    const count = Number.isFinite(countRaw) ? countRaw : 0;
+    total += count;
+    if (relation) {
+      byRelation[relation] = (byRelation[relation] ?? 0) + count;
+    }
+    if (resolution) {
+      byResolution[resolution] = (byResolution[resolution] ?? 0) + count;
+    }
+  }
+  return {
+    total,
+    byRelation,
+    byResolution,
+    pending: byResolution.pending ?? 0
+  };
+}
 
 // src/db/contradiction.ts
 var CONTRADICTION_JUDGE_SYSTEM_PROMPT = [
@@ -5805,6 +5837,20 @@ async function resolveConflict(db, newEntryId, newEntry, conflict, subjectIndex,
       reason: "temporal type with high confidence supersession"
     };
   }
+  if (conflict.result.relation === "coexists" && conflict.result.confidence > 0.8) {
+    await logConflict(
+      db,
+      newEntryId,
+      conflict.existingEntryId,
+      "coexists",
+      conflict.result.confidence,
+      "coexist"
+    );
+    console.error(
+      `[contradiction] resolution: coexist (high-confidence) entry=${conflict.existingEntryId.slice(0, 8)} (confidence=${conflict.result.confidence.toFixed(2)})`
+    );
+    return { action: "coexist", reason: "high-confidence coexistence" };
+  }
   if (conflict.result.relation === "contradicts" || conflict.result.confidence <= 0.75 || conflict.existingType === "decision" || conflict.existingType === "lesson") {
     await logConflict(
       db,
@@ -17711,7 +17757,6 @@ async function collectHealthStats(db, now, fileSizeBytes, forgettingThreshold, f
   let recalledFivePlus = 0;
   let forgettingCandidates = 0;
   let forgettingProtected = 0;
-  let contradictionFlags = 0;
   let staleTodos = 0;
   let qualityHigh = 0;
   let qualityMedium = 0;
@@ -17749,9 +17794,6 @@ async function collectHealthStats(db, now, fileSizeBytes, forgettingThreshold, f
     } else {
       recalledFivePlus += 1;
     }
-    if (entry.contradictions > 0) {
-      contradictionFlags += 1;
-    }
     if (entry.type === "todo" && ageDays2 > 30 && entry.recall_count <= 0) {
       staleTodos += 1;
     }
@@ -17810,6 +17852,7 @@ async function collectHealthStats(db, now, fileSizeBytes, forgettingThreshold, f
   const totalPending = pendingByReason.reduce((sum, item) => sum + item.count, 0);
   const oldestPendingCreatedAt = await getOldestPendingReviewCreatedAt(db);
   const oldestPendingAgeDays = oldestPendingCreatedAt && totalPending > 0 ? parseDaysBetween(now, oldestPendingCreatedAt) : null;
+  const conflictLog = await getConflictLogSummary(db);
   return {
     total,
     todos,
@@ -17834,10 +17877,8 @@ async function collectHealthStats(db, now, fileSizeBytes, forgettingThreshold, f
       estimatedFreedBytes: estimateFreedBytes2(forgettingCandidates, total, fileSizeBytes),
       threshold: forgettingThreshold
     },
-    consolidation: {
-      contradictionFlags,
-      staleTodos
-    },
+    staleTodos,
+    conflictLog,
     quality: {
       high: qualityHigh,
       medium: qualityMedium,
@@ -17871,6 +17912,12 @@ function formatAgeDays(ageDays2) {
 function renderHealthOutput(stats, now) {
   const overTarget = (stats.fileSizeBytes ?? 0) > 200 * MB2;
   const fileSizeNote = overTarget ? " (\u26A0 over 200MB target)" : "";
+  const conflictByRelation = `coexists=${stats.conflictLog.byRelation.coexists ?? 0}, supersedes=${stats.conflictLog.byRelation.supersedes ?? 0}, contradicts=${stats.conflictLog.byRelation.contradicts ?? 0}`;
+  const autoResolvedCoexist = stats.conflictLog.byResolution.coexist ?? 0;
+  const autoResolvedSuperseded = stats.conflictLog.byResolution["auto-superseded"] ?? 0;
+  const autoResolvedKeepBoth = stats.conflictLog.byResolution["keep-both"] ?? 0;
+  const autoResolvedKeepNew = stats.conflictLog.byResolution["keep-new"] ?? 0;
+  const autoResolvedTotal = autoResolvedCoexist + autoResolvedSuperseded + autoResolvedKeepBoth + autoResolvedKeepNew;
   const lines = [
     "DB Health \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500",
     `Entries: ${formatInt(stats.total)} total | ${formatInt(stats.todos)} todos | ${formatInt(stats.preferences)} preferences`,
@@ -17892,9 +17939,14 @@ function renderHealthOutput(stats, now) {
     `- score < ${stats.forgetting.threshold}:  ${formatInt(stats.forgetting.candidates)} entries (would free ~${formatFileSize(stats.forgetting.estimatedFreedBytes)})`,
     `- Protected:      ${formatInt(stats.forgetting.protected)} entries`,
     "",
-    "Consolidation Health",
-    `- Contradiction flags: ${formatInt(stats.consolidation.contradictionFlags)} entries`,
-    `- Stale todos (>30d old, not recalled): ${formatInt(stats.consolidation.staleTodos)}`,
+    "Conflict Log",
+    `- Total conflicts:       ${formatInt(stats.conflictLog.total)}`,
+    `- By relation:           ${conflictByRelation}`,
+    `- Pending resolution:    ${formatInt(stats.conflictLog.pending)}`,
+    `- Auto-resolved:         ${formatInt(autoResolvedTotal)} (coexist=${autoResolvedCoexist}, auto-superseded=${autoResolvedSuperseded}, keep-both=${autoResolvedKeepBoth}, keep-new=${autoResolvedKeepNew})`,
+    "",
+    "Stale Todos",
+    `- Over 30d old, not recalled: ${formatInt(stats.staleTodos)}`,
     "",
     "Quality Score Distribution",
     `- High (>= 0.7):      ${formatInt(stats.quality.high)} entries`,

package/dist/openclaw-plugin/index.js

@@ -160,6 +160,9 @@ function normalizeBufferedMessage(text) {
     return "";
   }
   if (trimmed.length > MAX_BUFFERED_MESSAGE_CHARS) {
+    if (trimmed.startsWith("[System Message]")) {
+      return "trivial";
+    }
     return trimmed.slice(0, MAX_BUFFERED_MESSAGE_CHARS);
   }
   return trimmed;
@@ -230,6 +233,9 @@ function classifyMessage(text) {
   if (!trimmed) {
     return "trivial";
   }
+  if (trimmed.startsWith("[System Message]")) {
+    return "trivial";
+  }
   const words = trimmed.split(/\s+/).map((word) => word.replace(/^[.!?,;:]+|[.!?,;:]+$/g, "")).filter(Boolean);
   const wordCount = words.length;
   const lower = trimmed.toLowerCase();
@@ -272,6 +278,9 @@ function buildQuery(message) {
     return "";
   }
   return trimmed.slice(0, MAX_QUERY_CHARS);
+  if (trimmed.startsWith("[System Message]")) {
+    return "trivial";
+  }
 }
 function tokenizeForSimilarity(text) {
   const tokens = text.toLowerCase().split(/\s+/).map((token) => token.replace(/^[^a-z0-9]+|[^a-z0-9]+$/g, "")).filter((token) => token.length > 0);

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "agenr",
-  "version": "0.9.24",
+  "version": "0.9.25",
   "openclaw": {
     "extensions": [
       "dist/openclaw-plugin/index.js"
@@ -11,6 +11,13 @@
   "bin": {
     "agenr": "dist/cli.js"
   },
+  "scripts": {
+    "build": "tsup src/cli.ts src/cli-main.ts src/openclaw-plugin/index.ts --format esm --dts",
+    "dev": "tsup src/cli.ts src/cli-main.ts --format esm --watch",
+    "test": "vitest run",
+    "test:watch": "vitest",
+    "typecheck": "tsc --noEmit"
+  },
   "dependencies": {
     "@clack/prompts": "^1.0.1",
     "@libsql/client": "^0.17.0",
@@ -54,11 +61,9 @@
     "README.md"
   ],
   "author": "agenr-ai",
-  "scripts": {
-    "build": "tsup src/cli.ts src/cli-main.ts src/openclaw-plugin/index.ts --format esm --dts",
-    "dev": "tsup src/cli.ts src/cli-main.ts --format esm --watch",
-    "test": "vitest run",
-    "test:watch": "vitest",
-    "typecheck": "tsc --noEmit"
+  "pnpm": {
+    "overrides": {
+      "fast-xml-parser": "^5.3.6"
+    }
   }
-}
+}