@zosmaai/pi-llm-wiki 0.11.8 → 0.12.1

package/dist/extensions/llm-wiki/lib/dashboard-command.js

@@ -1,4 +1,4 @@
-import { Container, matchesKey, Text } from "@mariozechner/pi-tui";
+import { Container, matchesKey, Text } from "@earendil-works/pi-tui";
 import { collectDashboardStats } from "./dashboard.js";
 const TYPE_ORDER = [
     "concept",

package/dist/extensions/llm-wiki/lib/guardrails.js

@@ -1,4 +1,4 @@
-import { isToolCallEventType } from "@mariozechner/pi-coding-agent";
+import { isToolCallEventType } from "@earendil-works/pi-coding-agent";
 import { scheduleReindex } from "./indexing.js";
 import { rebuildMetadataLight } from "./metadata.js";
 import { isPathWithin, isProtectedPath, resolveVaultPaths } from "./utils.js";

package/dist/extensions/llm-wiki/lib/host.js

@@ -1,6 +1,6 @@
 import { existsSync } from "node:fs";
 import { join } from "node:path";
-import { getAgentDir } from "@mariozechner/pi-coding-agent";
+import { getAgentDir } from "@earendil-works/pi-coding-agent";
 /** Project config directory name per host. */
 const CONFIG_DIR = { pi: ".pi", omp: ".omp" };
 /** Settings file names inside a config directory, lowest → highest precedence. */

package/dist/extensions/llm-wiki/lib/knowledge-document.js

@@ -383,7 +383,14 @@ export function serializeKnowledgeDocument(document) {
     const body = document.body.replace(/\r\n?/g, "\n").replace(/\n*$/, "");
     return body ? `---\n${yaml}---\n\n${body}\n` : `---\n${yaml}---\n`;
 }
-/** Escape wikilink alias pipes so generated content remains valid in Markdown tables. */
+const TABLE_ROW = /^\s*\|.*\|\s*$/;
+/** Escape wikilink alias pipes only inside Markdown table rows.
+ *
+ * A bare `|` inside `[[target|alias]]` would be read as a table cell
+ * delimiter when the row renders, so table rows need the pipe escaped as
+ * `[[target\|alias]]`. Prose, lists, headings, and fenced code keep their
+ * pipes literal, so the written file stays valid for external readers
+ * (Obsidian, VS Code Wiki Links) that don't understand the escaped form. */
 function escapeWikilinkAliasPipes(body) {
     let inFence = false;
     return body
@@ -395,7 +402,9 @@ function escapeWikilinkAliasPipes(body) {
         }
         if (inFence)
             return line;
-        return line.replace(/\[\[([^\]\n]*?)(?<!\\)\|([^\]\n]*?)\]\]/g, "[[$1\\|$2]]");
+        return TABLE_ROW.test(line)
+            ? line.replace(/\[\[([^\]\n]*?)(?<!\\)\|([^\]\n]*?)\]\]/g, "[[$1\\|$2]]")
+            : line;
     })
         .join("\n");
 }

package/dist/extensions/llm-wiki/lib/model-command.js

@@ -1,4 +1,4 @@
-import { Container, matchesKey, SelectList, Spacer, Text, } from "@mariozechner/pi-tui";
+import { Container, matchesKey, SelectList, Spacer, Text, } from "@earendil-works/pi-tui";
 import { parseModelRef, persistTaskModel } from "./task-config.js";
 /** Words that clear the override and revert to the session model. */
 const CLEAR_WORDS = new Set(["session", "default", "reset", "clear", "none", "unset"]);

package/dist/extensions/llm-wiki/lib/settings-command.js

@@ -1,5 +1,5 @@
 import { homedir } from "node:os";
-import { Container, Input, SettingsList, Spacer, Text, } from "@mariozechner/pi-tui";
+import { Container, Input, SettingsList, Spacer, Text, } from "@earendil-works/pi-tui";
 import { loadTaskConfig, loadTaskConfigSources, parseModelRef, persistSetting, trajectoriesEnabled, } from "./task-config.js";
 const SETTINGS = [
     {

package/dist/extensions/llm-wiki/lib/source-packet.js

@@ -1,6 +1,6 @@
 import { mkdirSync, writeFileSync } from "node:fs";
 import { copyFile } from "node:fs/promises";
-import { extname, join } from "node:path";
+import { basename, extname, join } from "node:path";
 import { createKnowledgeDocument, serializeKnowledgeDocument } from "./knowledge-document.js";
 import { appendEvent } from "./metadata.js";
 import { binaryExtractionFailureMessage, detectBinaryMagicBytes, extractUrlContent, fileExtractorFor, } from "./source-extractors.js";
@@ -47,7 +47,7 @@ function urlCaptureSource(pi, url, signal) {
     };
 }
 function fileCaptureSource(pi, filePath, signal) {
-    const fileName = filePath.split("/").pop() || "unknown";
+    const fileName = originalFileNameForPath(filePath);
     const extractor = fileExtractorFor(filePath);
     const content = extractor.shouldReadText ? readText(filePath) : "";
     return {
@@ -168,6 +168,14 @@ function originalFileNameForUrl(url) {
     }
     return "source.html";
 }
+/**
+ * Original-artifact name for a local file capture. Uses platform basename so
+ * Windows absolute paths (drive colon + backslashes) cannot leak into the
+ * packet/original file name (issue #204).
+ */
+export function originalFileNameForPath(filePath) {
+    return basename(filePath) || "unknown";
+}
 function contentExtractionFailureMessage(source) {
     return `_Content could not be extracted from ${source}_\n`;
 }

package/dist/extensions/llm-wiki/lib/subagent.js

@@ -1,4 +1,4 @@
-import { agentLoop, } from "@mariozechner/pi-agent-core";
+import { agentLoop, } from "@earendil-works/pi-agent-core";
 /**
  * Run a sub-agent loop to completion.
  *

package/dist/extensions/llm-wiki/lib/tools.js

@@ -871,6 +871,9 @@ function runWikiLint(paths, autoFix) {
     // The gap snapshot is generated discovery metadata consumed by wiki_status:
     // persist it on every successful lint so status never reports a stale count.
     // Corrective actions below (report, event, meta rebuild) stay autoFix-only.
+    // mkdir mirrors the autoFix report write below: on a fresh checkout the
+    // gitignored .discoveries dir does not exist yet (issue #203).
+    mkdirSync(paths.discoveries, { recursive: true });
     writeJson(join(paths.discoveries, "gaps.json"), {
         gaps,
         generated: new Date().toISOString(),

package/docs/superpowers/plans/2026-09-02-wiki-lint-fresh-vault-and-windows-capture-fixes.md

@@ -0,0 +1,284 @@
+# Wiki Lint Fresh-Vault + Windows Capture Fixes Implementation Plan
+
+> **For agentic workers:** REQUIRED SUB-SKILL: Use /skill:executing-plans to implement this plan task-by-task. Steps use checkbox (`- [ ]`) syntax for tracking.
+
+**Goal:** Fix two one-line bugs — `wiki_lint` crashing with ENOENT on fresh checkouts (issue #203) and `wiki_capture_source` corrupting the `original/` artifact name on Windows absolute paths (issue #204) — each with a regression test.
+
+**Architecture:** Both fixes slot into existing code with no new modules. #203: `runWikiLint` (private in `tools.ts`) persists the gap snapshot via `writeJson` without ensuring `.llm-wiki/.discoveries/` exists; it gets the same `mkdirSync(recursive)` treatment the `autoFix` report write in the same function already uses. #204: `fileCaptureSource` derives the artifact name with `filePath.split("/").pop()`, which is a no-op on Windows paths; replace with a small exported, platform-aware `originalFileNameForPath()` helper modeled on the existing `originalFileNameForUrl()` sibling so the behavior is unit-testable cross-platform.
+
+**Tech Stack:** TypeScript (ES2022, ESM), Vitest, Biome, pnpm.
+
+**Roadmap:** None
+
+**Phase:** Single-plan implementation (two independent one-line fixes, one branch, one PR)
+
+---
+
+## Background (what the engineer must know)
+
+- Repo: `@zosmaai/pi-llm-wiki`. Two bugs, both confirmed present on current `main`:
+  - **#203** — `runWikiLint()` (`extensions/llm-wiki/lib/tools.ts:879`) unconditionally writes `gaps.json` to `paths.discoveries` at ~line 1018. `ensureVaultStructure` (`lib/utils.ts:262`) does create `.discoveries` — but only when bootstrapping a vault. A fresh git checkout/worktree of an existing vault has `.discoveries` gitignored → absent → `writeJson` → `writeFileSync` throws ENOENT → the whole lint run is discarded and no report is ever delivered.
+  - **#204** — `fileCaptureSource()` (`extensions/llm-wiki/lib/source-packet.ts:114`) computes `const fileName = filePath.split("/").pop() || "unknown"`. On Windows an absolute path like `D:\any\dir\doc.md` contains no `/`, so `fileName` becomes the whole string; `preserveFileOriginal` then writes `join(packetPath, "original", "D:\any\dir\doc.md")` — a drive colon inside a filename segment, illegal on Windows → capture fails, empty packet left behind.
+- Test harness facts (verified, so the tests below compile as-is):
+  - `test/lint-okf.test.ts` drives the tool via `registerWikiLint({ registerTool: ... } as unknown as ExtensionAPI)` and `tool.execute("test", params, undefined, undefined, { cwd: root, hasUI: false })`. It imports `existsSync`, `rmSync`, `writeFileSync`, `readFileSync` from `node:fs` and `getVaultPaths`, `ensureVaultStructure` from `lib/utils.js` — everything this plan's test needs is already imported.
+  - Without a `Runtime` (the test case), `dispatchReported` (`tools.ts:82`) runs `work()` inline with **no catch** — so the ENOENT rejection propagates out of `tool.execute()`. That is why the failing test below fails by throwing.
+  - `test/source-capture.test.ts` already imports `{ captureFile, captureText, captureUrl }` from `lib/source-packet.js` and has a `makePaths()` helper + `mockPi()` from `./helpers.js`.
+- Commands: `pnpm test` (vitest), `pnpm typecheck`, `pnpm lint` (biome). Node/pnpm available; `pnpm --version` = 9.15.4.
+- Issue #171 is explicitly out of scope.
+
+## File Structure
+
+| File | Change | Responsibility in this plan |
+|---|---|---|
+| `extensions/llm-wiki/lib/tools.ts` | Modify (~line 1015, inside `runWikiLint`) | One-line `mkdirSync(paths.discoveries, { recursive: true })` before the gaps write |
+| `extensions/llm-wiki/lib/source-packet.ts` | Modify (line 3 import, line 114, new helper after `originalFileNameForUrl` at ~line 256) | Export `originalFileNameForPath(filePath)`; use it in `fileCaptureSource` |
+| `test/lint-okf.test.ts` | Modify (append one `it(...)` after the "refreshes a stale gap snapshot to empty on audit-only lint" test, ~line 183) | Regression test: lint on a vault without `.discoveries` completes and persists `gaps.json` |
+| `test/source-capture.test.ts` | Modify (extend the `source-packet.js` import; add one `it(...)` after the "should copy local non-PDF file content to extracted.md" test) | Unit test: `originalFileNameForPath` strips the platform's directory prefix |
+
+No new files. No config, docs, or schema changes.
+
+---
+
+### Task 1: Fix #203 — `wiki_lint` ENOENT on fresh vault
+
+**Files:**
+- Modify: `extensions/llm-wiki/lib/tools.ts` (inside `runWikiLint`, the gaps write at ~lines 1015-1020)
+- Test: `test/lint-okf.test.ts`
+
+- [x] **Step 1: Write the failing test**
+
+Append this `it(...)` to `test/lint-okf.test.ts`, immediately after the closing `});` of the test named `"refreshes a stale gap snapshot to empty on audit-only lint"` (that test ends with `expect(status.content[0].text).toContain("Gaps: 0");` + `});`, ~line 183). All symbols used are already imported in this file:
+
+```ts
+it("completes on a fresh checkout where .discoveries is not yet created (issue #203)", async () => {
+  const paths = getVaultPaths(root);
+  ensureVaultStructure(paths);
+  // Fresh checkouts / worktrees of an existing vault do not have the
+  // gitignored .discoveries directory — simulate that.
+  rmSync(paths.discoveries, { recursive: true, force: true });
+  writeFileSync(join(paths.dotWiki, "config.json"), JSON.stringify({ name: "Fresh lint" }));
+  writeFileSync(
+    join(paths.wiki, "concepts", "valid.md"),
+    "---\ntype: concept\n---\n\nValid.\n",
+  );
+
+  let tool: TestTool | undefined;
+  registerWikiLint({
+    registerTool: (definition: unknown) => {
+      tool = definition as TestTool;
+    },
+  } as unknown as ExtensionAPI);
+  if (!tool) throw new Error("wiki_lint was not registered");
+  const result = await tool.execute("test", { auto_fix: false }, undefined, undefined, {
+    cwd: root,
+    hasUI: false,
+  });
+
+  expect(result.isError).not.toBe(true);
+  // auto_fix:false returns the run summary (not the reportLines file content).
+  expect(result.content[0].text).toContain("LLM Wiki lint complete");
+  expect(existsSync(join(paths.discoveries, "gaps.json"))).toBe(true);
+  const snapshot = JSON.parse(readFileSync(join(paths.discoveries, "gaps.json"), "utf8"));
+  expect(snapshot.gaps).toEqual([]);
+});
+```
+
+- [x] **Step 2: Run the test to verify it fails**
+
+Run: `pnpm vitest run test/lint-okf.test.ts -t "fresh checkout"`
+
+Expected: FAIL — the `await tool.execute(...)` line throws `Error: ENOENT: no such file or directory, open '<root>/.llm-wiki/.discoveries/gaps.json'` (rejection propagates because `dispatchReported` has no runtime in tests).
+
+- [x] **Step 3: Write the minimal implementation**
+
+In `extensions/llm-wiki/lib/tools.ts`, inside `runWikiLint`, change this block (~lines 1015-1020):
+
+```ts
+  // The gap snapshot is generated discovery metadata consumed by wiki_status:
+  // persist it on every successful lint so status never reports a stale count.
+  // Corrective actions below (report, event, meta rebuild) stay autoFix-only.
+  writeJson(join(paths.discoveries, "gaps.json"), {
+    gaps,
+    generated: new Date().toISOString(),
+  });
+```
+
+to:
+
+```ts
+  // The gap snapshot is generated discovery metadata consumed by wiki_status:
+  // persist it on every successful lint so status never reports a stale count.
+  // Corrective actions below (report, event, meta rebuild) stay autoFix-only.
+  // mkdir mirrors the autoFix report write below: on a fresh checkout the
+  // gitignored .discoveries dir does not exist yet (issue #203).
+  mkdirSync(paths.discoveries, { recursive: true });
+  writeJson(join(paths.discoveries, "gaps.json"), {
+    gaps,
+    generated: new Date().toISOString(),
+  });
+```
+
+`mkdirSync` is already imported at the top of `tools.ts` (line 1: `import { existsSync, mkdirSync, readdirSync, readFileSync, writeFileSync } from "node:fs";`) — no import change.
+
+- [x] **Step 4: Run the test to verify it passes**
+
+Run: `pnpm vitest run test/lint-okf.test.ts`
+
+Expected: PASS — all tests in the file green, including the new one.
+
+- [x] **Step 5: Run the full gate**
+
+Run: `pnpm test && pnpm typecheck && pnpm lint`
+
+Expected: all green (no unrelated breakage).
+
+- [x] **Step 6: Commit**
+
+```bash
+git add test/lint-okf.test.ts extensions/llm-wiki/lib/tools.ts
+git commit -m "fix: ensure .discoveries exists before lint persists the gap snapshot (#203)"
+```
+
+---
+
+### Task 2: Fix #204 — Windows drive colon in captured file name
+
+**Files:**
+- Modify: `extensions/llm-wiki/lib/source-packet.ts` (line 3 import; line 114 in `fileCaptureSource`; new exported helper after `originalFileNameForUrl`, which ends ~line 256)
+- Test: `test/source-capture.test.ts`
+
+- [x] **Step 1: Write the failing test**
+
+First, extend the existing import at line 5 of `test/source-capture.test.ts`:
+
+```ts
+import { captureFile, captureText, captureUrl } from "../extensions/llm-wiki/lib/source-packet.js";
+```
+
+becomes:
+
+```ts
+import {
+  captureFile,
+  captureText,
+  captureUrl,
+  originalFileNameForPath,
+} from "../extensions/llm-wiki/lib/source-packet.js";
+```
+
+Then append this `it(...)` inside the `describe("source packet capture", ...)` block, immediately after the test named `"should copy local non-PDF file content to extracted.md"` (ends with `expect(existsSync(join(result.packetPath, "original", "notes.md"))).toBe(true);` + `});`):
+
+```ts
+it("derives the original artifact name with platform basename so drive letters stay out of file names (issue #204)", () => {
+  const absPath =
+    process.platform === "win32" ? "D:\\any\\dir\\doc.md" : "/home/user/any/dir/doc.md";
+  expect(originalFileNameForPath(absPath)).toBe("doc.md");
+});
+```
+
+- [x] **Step 2: Run the test to verify it fails**
+
+Run: `pnpm vitest run test/source-capture.test.ts -t "drive letters"`
+
+Expected: FAIL — module load error: `No export named "originalFileNameForPath"` (the named ESM import does not exist yet).
+
+- [x] **Step 3: Write the minimal implementation**
+
+In `extensions/llm-wiki/lib/source-packet.ts`, make three edits:
+
+1. Line 3 import — change:
+
+```ts
+import { extname, join } from "node:path";
+```
+
+to:
+
+```ts
+import { basename, extname, join } from "node:path";
+```
+
+2. After `originalFileNameForUrl` (the function ending `return "source.html";` + `});`/`}`, ~line 256), add:
+
+```ts
+/**
+ * Original-artifact name for a local file capture. Uses platform basename so
+ * Windows absolute paths (drive colon + backslashes) cannot leak into the
+ * packet/original file name (issue #204).
+ */
+export function originalFileNameForPath(filePath: string): string {
+  return basename(filePath) || "unknown";
+}
+```
+
+3. Inside `fileCaptureSource` (~line 114) — change:
+
+```ts
+  const fileName = filePath.split("/").pop() || "unknown";
+```
+
+to:
+
+```ts
+  const fileName = originalFileNameForPath(filePath);
+```
+
+`fileName` flows into `preserveFileOriginal(packetPath, filePath, fileName, content)` and the manifest `title` — both now get the clean basename.
+
+- [x] **Step 4: Run the test to verify it passes**
+
+Run: `pnpm vitest run test/source-capture.test.ts`
+
+Expected: PASS — all tests in the file green, including the new one.
+
+Note (honest ceiling): on Linux, POSIX `basename("D:\\any\\dir\\doc.md")` returns the string unchanged, so this assertion only has teeth on `win32` — it pins the operation choice (platform basename vs. slash-split) rather than reproducing Windows. Full Windows coverage needs a Windows CI leg or manual repro.
+
+- [x] **Step 5: Run the full gate**
+
+Run: `pnpm test && pnpm typecheck && pnpm lint`
+
+Expected: all green.
+
+- [x] **Step 6: Commit**
+
+```bash
+git add test/source-capture.test.ts extensions/llm-wiki/lib/source-packet.ts
+git commit -m "fix: use platform basename for file capture artifact names (#204)"
+```
+
+---
+
+### Task 3: Push branch, open PR
+
+**Files:** none (git/gh only)
+
+- [x] **Step 1: Push and open the PR**
+
+```bash
+git push -u origin fix/lint-fresh-vault-and-windows-basename
+gh pr create \
+  --title "fix: lint ENOENT on fresh vaults (#203) + Windows capture basename (#204)" \
+  --body "Fixes #203. Fixes #204.
+
+Two one-line fixes with regression tests:
+- wiki_lint: mkdirSync the gitignored .discoveries dir before persisting the gap snapshot (mirrors the autoFix report write in the same function).
+- wiki_capture_source: derive the original artifact name with platform basename instead of split('/').pop() so Windows absolute paths no longer embed a drive colon in the file name."
+```
+
+Expected: PR created; `Fixes #203` / `Fixes #204` auto-close the issues on merge.
+
+---
+
+## Setup (before Task 1)
+
+- [x] **Step 0: Branch from main**
+
+Working tree is clean (verified 2026-09-02); current branch is `qmd-phase-1` — do the work on a dedicated branch off `main`:
+
+```bash
+git checkout main
+git pull --ff-only
+git checkout -b fix/lint-fresh-vault-and-windows-basename
+```
+
+Expected: `Switched to a new branch 'fix/lint-fresh-vault-and-windows-basename'`.

package/extensions/llm-wiki/index.ts

@@ -1,6 +1,6 @@
 import { existsSync, readFileSync } from "node:fs";
 import { basename, join } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { bootstrapVault } from "./lib/bootstrap.js";
 import { registerWikiDashboardCommand } from "./lib/dashboard-command.js";
 import { installGuardrails } from "./lib/guardrails.js";

package/extensions/llm-wiki/lib/dashboard-command.ts

@@ -6,8 +6,8 @@
  * from on-disk vault state (see lib/dashboard.ts) and rendered as plain
  * text through a Container + Text.
  */
-import type { ExtensionAPI, ExtensionCommandContext } from "@mariozechner/pi-coding-agent";
-import { Container, matchesKey, Text } from "@mariozechner/pi-tui";
+import type { ExtensionAPI, ExtensionCommandContext } from "@earendil-works/pi-coding-agent";
+import { Container, matchesKey, Text } from "@earendil-works/pi-tui";
 import { collectDashboardStats, type DashboardStats } from "./dashboard.js";
 import type { Runtime } from "./runtime.js";
 

package/extensions/llm-wiki/lib/guardrails.ts

@@ -1,5 +1,5 @@
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
-import { isToolCallEventType } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
+import { isToolCallEventType } from "@earendil-works/pi-coding-agent";
 import { scheduleReindex } from "./indexing.js";
 import { rebuildMetadataLight } from "./metadata.js";
 import type { Runtime } from "./runtime.js";

package/extensions/llm-wiki/lib/host.ts

@@ -1,14 +1,14 @@
 import { existsSync } from "node:fs";
 import { join } from "node:path";
-import { getAgentDir } from "@mariozechner/pi-coding-agent";
+import { getAgentDir } from "@earendil-works/pi-coding-agent";
 
 /**
  * Host adapter for the two coding agents that can load this extension:
  *
- *  - **pi**   — `@mariozechner/pi-coding-agent`, config dir `.pi`
+ *  - **pi**   — `@earendil-works/pi-coding-agent`, config dir `.pi`
  *  - **omp**  — oh-my-pi (`@oh-my-pi/pi-coding-agent`), config dir `.omp`
  *
- * omp rewrites `@mariozechner/pi-*` (and bare `typebox`) imports onto its own
+ * omp rewrites `@earendil-works/pi-*` (and bare `typebox`) imports onto its own
  * bundled packages at load time (its `legacy-pi-compat.ts`), so the *module
  * graph* needs no changes. What does differ is the on-disk config layout:
  *

package/extensions/llm-wiki/lib/ingest-worker.ts

@@ -1,7 +1,7 @@
 import { existsSync, mkdirSync } from "node:fs";
 import { join } from "node:path";
-import type { AgentTool } from "@mariozechner/pi-agent-core";
-import type { Api, Model } from "@mariozechner/pi-ai";
+import type { AgentTool } from "@earendil-works/pi-agent-core";
+import type { Api, Model } from "@earendil-works/pi-ai";
 import type { Static } from "typebox";
 import { Type } from "typebox";
 import {

package/extensions/llm-wiki/lib/knowledge-document.ts

@@ -589,7 +589,15 @@ export function serializeKnowledgeDocument(document: KnowledgeDocument): string
   return body ? `---\n${yaml}---\n\n${body}\n` : `---\n${yaml}---\n`;
 }
 
-/** Escape wikilink alias pipes so generated content remains valid in Markdown tables. */
+const TABLE_ROW = /^\s*\|.*\|\s*$/;
+
+/** Escape wikilink alias pipes only inside Markdown table rows.
+ *
+ * A bare `|` inside `[[target|alias]]` would be read as a table cell
+ * delimiter when the row renders, so table rows need the pipe escaped as
+ * `[[target\|alias]]`. Prose, lists, headings, and fenced code keep their
+ * pipes literal, so the written file stays valid for external readers
+ * (Obsidian, VS Code Wiki Links) that don't understand the escaped form. */
 function escapeWikilinkAliasPipes(body: string): string {
   let inFence = false;
   return body
@@ -600,7 +608,9 @@ function escapeWikilinkAliasPipes(body: string): string {
         return line;
       }
       if (inFence) return line;
-      return line.replace(/\[\[([^\]\n]*?)(?<!\\)\|([^\]\n]*?)\]\]/g, "[[$1\\|$2]]");
+      return TABLE_ROW.test(line)
+        ? line.replace(/\[\[([^\]\n]*?)(?<!\\)\|([^\]\n]*?)\]\]/g, "[[$1\\|$2]]")
+        : line;
     })
     .join("\n");
 }

package/extensions/llm-wiki/lib/model-command.ts

@@ -1,4 +1,4 @@
-import type { ExtensionAPI, Theme } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI, Theme } from "@earendil-works/pi-coding-agent";
 import {
   Container,
   matchesKey,
@@ -7,7 +7,7 @@ import {
   type SelectListTheme,
   Spacer,
   Text,
-} from "@mariozechner/pi-tui";
+} from "@earendil-works/pi-tui";
 import type { Runtime } from "./runtime.js";
 import { parseModelRef, persistTaskModel, type TaskConfig } from "./task-config.js";
 

package/extensions/llm-wiki/lib/observation.ts

@@ -1,5 +1,5 @@
 import { join } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { Type } from "typebox";
 import { scheduleReindex } from "./indexing.js";
 import { createKnowledgeDocument, writeKnowledgeDocumentFile } from "./knowledge-document.js";

package/extensions/llm-wiki/lib/recall.ts

@@ -1,6 +1,6 @@
 import { existsSync, readFileSync } from "node:fs";
 import { join } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { Type } from "typebox";
 import {
   cosineSimilarity,

package/extensions/llm-wiki/lib/retro.ts

@@ -1,5 +1,5 @@
 import { dirname, join, resolve } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { Type } from "typebox";
 import { scheduleReindex } from "./indexing.js";
 import { createKnowledgeDocument, writeKnowledgeDocumentFile } from "./knowledge-document.js";

package/extensions/llm-wiki/lib/runtime.ts

@@ -1,4 +1,4 @@
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { loadTaskConfig, noticesEnabled, TASK_DEFAULTS, type TaskConfig } from "./task-config.js";
 
 /**

package/extensions/llm-wiki/lib/settings-command.ts

@@ -1,5 +1,5 @@
 import { homedir } from "node:os";
-import type { ExtensionAPI, Theme } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI, Theme } from "@earendil-works/pi-coding-agent";
 import {
   Container,
   Input,
@@ -8,7 +8,7 @@ import {
   type SettingsListTheme,
   Spacer,
   Text,
-} from "@mariozechner/pi-tui";
+} from "@earendil-works/pi-tui";
 import type { Runtime } from "./runtime.js";
 import {
   loadTaskConfig,

package/extensions/llm-wiki/lib/source-packet.ts

@@ -1,6 +1,6 @@
 import { mkdirSync, writeFileSync } from "node:fs";
 import { copyFile } from "node:fs/promises";
-import { extname, join } from "node:path";
+import { basename, extname, join } from "node:path";
 import { createKnowledgeDocument, serializeKnowledgeDocument } from "./knowledge-document.js";
 import { appendEvent } from "./metadata.js";
 import {
@@ -111,7 +111,7 @@ function urlCaptureSource(pi: ExecApi, url: string, signal?: AbortSignal): Captu
 }
 
 function fileCaptureSource(pi: ExecApi, filePath: string, signal?: AbortSignal): CaptureSource {
-  const fileName = filePath.split("/").pop() || "unknown";
+  const fileName = originalFileNameForPath(filePath);
   const extractor = fileExtractorFor(filePath);
   const content = extractor.shouldReadText ? readText(filePath) : "";
 
@@ -255,6 +255,15 @@ function originalFileNameForUrl(url: string): string {
   return "source.html";
 }
 
+/**
+ * Original-artifact name for a local file capture. Uses platform basename so
+ * Windows absolute paths (drive colon + backslashes) cannot leak into the
+ * packet/original file name (issue #204).
+ */
+export function originalFileNameForPath(filePath: string): string {
+  return basename(filePath) || "unknown";
+}
+
 function contentExtractionFailureMessage(source: string): string {
   return `_Content could not be extracted from ${source}_\n`;
 }

package/extensions/llm-wiki/lib/subagent.ts

@@ -3,8 +3,8 @@ import {
   type AgentLoopConfig,
   type AgentTool,
   agentLoop,
-} from "@mariozechner/pi-agent-core";
-import type { Api, Message, Model } from "@mariozechner/pi-ai";
+} from "@earendil-works/pi-agent-core";
+import type { Api, Message, Model } from "@earendil-works/pi-ai";
 
 /**
  * Thin sub-agent runner for the LLM Wiki background lane (issue #64, part of #63).

package/extensions/llm-wiki/lib/tools.ts

@@ -1,6 +1,6 @@
 import { existsSync, mkdirSync, readdirSync, readFileSync, writeFileSync } from "node:fs";
 import { join, relative } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { Type } from "typebox";
 import { bootstrapVault } from "./bootstrap.js";
 import { launchEmbedPages, reindexEmbeddings, resolveEmbedder } from "./embeddings.js";
@@ -1013,6 +1013,9 @@ function runWikiLint(paths: VaultPaths, autoFix: boolean): string {
   // The gap snapshot is generated discovery metadata consumed by wiki_status:
   // persist it on every successful lint so status never reports a stale count.
   // Corrective actions below (report, event, meta rebuild) stay autoFix-only.
+  // mkdir mirrors the autoFix report write below: on a fresh checkout the
+  // gitignored .discoveries dir does not exist yet (issue #203).
+  mkdirSync(paths.discoveries, { recursive: true });
   writeJson(join(paths.discoveries, "gaps.json"), {
     gaps,
     generated: new Date().toISOString(),

package/extensions/llm-wiki/lib/trajectories-command.ts

@@ -1,4 +1,4 @@
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { loadTaskConfig, persistTrajectoriesEnabled, trajectoriesEnabled } from "./task-config.js";
 
 /**

package/extensions/llm-wiki/lib/trajectory.ts

@@ -1,6 +1,6 @@
 import { existsSync, mkdirSync, readdirSync, readFileSync, writeFileSync } from "node:fs";
 import { join } from "node:path";
-import type { ExtensionAPI, ExtensionContext } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI, ExtensionContext } from "@earendil-works/pi-coding-agent";
 import { Type } from "typebox";
 import { appendEvent, rebuildMetadataLight } from "./metadata.js";
 import { searchWikiLayered } from "./recall.js";

package/extensions/llm-wiki/lib/utils.ts

@@ -12,7 +12,7 @@ import {
 } from "node:fs";
 import { homedir } from "node:os";
 import { basename, dirname, isAbsolute, join, relative, sep } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 
 /**
  * Vault utility functions for the LLM Wiki extension.

package/mcp/operations.ts

@@ -7,7 +7,7 @@
  */
 
 import { join } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { bootstrapVault } from "../extensions/llm-wiki/lib/bootstrap.js";
 import {
   applyWikilinkGate,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@zosmaai/pi-llm-wiki",
-  "version": "0.11.8",
+  "version": "0.12.1",
   "description": "Self-maintaining LLM Wiki for Pi — Karpathy-pattern knowledge base with immutable source capture, automated ingestion, search, linting, and Obsidian-compatible vault. auto-updating personal & company wiki.",
   "keywords": [
     "pi",
@@ -75,14 +75,14 @@
     ]
   },
   "peerDependencies": {
-    "@mariozechner/pi-coding-agent": "*"
+    "@earendil-works/pi-coding-agent": ">=0.78.1"
   },
   "engines": {
     "node": ">=18"
   },
   "dependencies": {
     "@cfworker/json-schema": "^4.1.1",
-    "@mariozechner/pi-tui": "0.73.1",
+    "@earendil-works/pi-tui": "0.84.4",
     "@modelcontextprotocol/server": "^2.0.0",
     "mdast-util-from-markdown": "^2.0.3",
     "node-html-markdown": "^2.0.0",
@@ -93,9 +93,9 @@
   "devDependencies": {
     "@astrojs/starlight": "^0.41.10",
     "@biomejs/biome": "^2.5.11",
-    "@mariozechner/pi-agent-core": "^0.73.1",
-    "@mariozechner/pi-ai": "^0.73.1",
-    "@mariozechner/pi-coding-agent": "^0.70.2",
+    "@earendil-works/pi-agent-core": "^0.78.1",
+    "@earendil-works/pi-ai": "^0.78.1",
+    "@earendil-works/pi-coding-agent": "^0.78.1",
     "@mermaid-js/mermaid-cli": "^11.12.0",
     "@types/mdast": "^4.0.4",
     "@types/node": "^26",