@zosmaai/pi-llm-wiki 0.11.7 → 0.12.0

package/extensions/llm-wiki/lib/observation.ts

@@ -1,11 +1,11 @@
 import { join } from "node:path";
-import type { ExtensionAPI, ExtensionContext } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { Type } from "typebox";
 import { scheduleReindex } from "./indexing.js";
 import { createKnowledgeDocument, writeKnowledgeDocumentFile } from "./knowledge-document.js";
 import { appendEvent, rebuildMetadataLight } from "./metadata.js";
 import type { Runtime } from "./runtime.js";
-import { type VaultPaths, fmtDate, resolveVaultPaths } from "./utils.js";
+import { fmtDate, resolveVaultPaths, type VaultPaths } from "./utils.js";
 import { assertWritableVault, inspectWritableVault } from "./vault-format.js";
 
 // ─── Types ─────────────────────────────────────────────

package/extensions/llm-wiki/lib/recall.ts

@@ -1,11 +1,11 @@
 import { existsSync, readFileSync } from "node:fs";
 import { join } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { Type } from "typebox";
 import {
+  cosineSimilarity,
   type Embedder,
   type EmbeddingStore,
-  cosineSimilarity,
   normalizeVector,
   readEmbeddingStore,
   resolveEmbedder,
@@ -15,11 +15,11 @@ import type { Registry } from "./metadata.js";
 import type { Runtime } from "./runtime.js";
 import type { TaskConfig } from "./task-config.js";
 import {
-  type VaultPaths,
   getPersonalWikiPaths,
   isPersonalVault,
   readJson,
   resolveVaultPaths,
+  type VaultPaths,
 } from "./utils.js";
 import { inspectVaultFormat } from "./vault-format.js";
 
@@ -111,7 +111,7 @@ function normalizeText(value: unknown): string {
   return flattenSearchValue(value)
     .toLowerCase()
     .normalize("NFKC")
-    .replace(/[\-_./\\]+/g, " ")
+    .replace(/[-_./\\]+/g, " ")
     .replace(/[\p{P}\p{S}]+/gu, " ")
     .replace(/\s+/g, " ")
     .trim();
@@ -333,7 +333,7 @@ function chunkPreview(heading: string, content: string): string {
 function extractExpansionTerms(
   scored: Scored[],
   originalQuery: string,
-  paths: VaultPaths,
+  _paths: VaultPaths,
   maxTerms = 6,
 ): string[] {
   const topResults = scored.slice(0, Math.min(3, scored.length));

package/extensions/llm-wiki/lib/retro.ts

@@ -1,5 +1,5 @@
 import { dirname, join, resolve } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { Type } from "typebox";
 import { scheduleReindex } from "./indexing.js";
 import { createKnowledgeDocument, writeKnowledgeDocumentFile } from "./knowledge-document.js";
@@ -7,7 +7,7 @@ import { applyWikilinkGate, buildWikilinkIndex } from "./knowledge-links.js";
 import { appendEvent, rebuildMetadataLight } from "./metadata.js";
 import type { Runtime } from "./runtime.js";
 import { loadTaskConfig, resolveWikilinkValidation } from "./task-config.js";
-import { type VaultPaths, fmtDate, readJson, resolveVaultPaths } from "./utils.js";
+import { fmtDate, readJson, resolveVaultPaths, type VaultPaths } from "./utils.js";
 import { assertWritableVault, inspectWritableVault } from "./vault-format.js";
 
 // ─── Public API ────────────────────────────────────────

package/extensions/llm-wiki/lib/runtime.ts

@@ -1,5 +1,5 @@
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
-import { TASK_DEFAULTS, type TaskConfig, loadTaskConfig, noticesEnabled } from "./task-config.js";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
+import { loadTaskConfig, noticesEnabled, TASK_DEFAULTS, type TaskConfig } from "./task-config.js";
 
 /**
  * Background-task runtime for the LLM Wiki (issue #64, part of #63).

package/extensions/llm-wiki/lib/settings-command.ts

@@ -1,5 +1,5 @@
 import { homedir } from "node:os";
-import type { ExtensionAPI, Theme } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI, Theme } from "@earendil-works/pi-coding-agent";
 import {
   Container,
   Input,
@@ -8,14 +8,14 @@ import {
   type SettingsListTheme,
   Spacer,
   Text,
-} from "@mariozechner/pi-tui";
+} from "@earendil-works/pi-tui";
 import type { Runtime } from "./runtime.js";
 import {
-  type SettingScope,
   loadTaskConfig,
   loadTaskConfigSources,
   parseModelRef,
   persistSetting,
+  type SettingScope,
   trajectoriesEnabled,
 } from "./task-config.js";
 
@@ -49,6 +49,7 @@ interface Ui {
       keybindings: unknown,
       done: (result?: unknown) => void,
     ) => unknown,
+    options?: { overlay?: boolean; overlayOptions?: Record<string, unknown> },
   ): Promise<unknown>;
 }
 
@@ -363,6 +364,12 @@ function scopeTitle(scope: SettingScope): string {
   return `\u{1F9E0} LLM Wiki Settings \u2014 ${scope === "global" ? "Global" : "Project"} (Esc to close)`;
 }
 
+// ponytail: overlay options matching pi-blackhole's config modal style
+const OVERLAY_OPTS = {
+  overlay: true,
+  overlayOptions: { anchor: "center", width: "92%", maxHeight: "95%" },
+};
+
 async function showSettingsTui(ui: Ui, cwd: string, scope: SettingScope): Promise<void> {
   if (typeof ui.custom !== "function") {
     ui.notify(
@@ -445,7 +452,7 @@ async function showSettingsTui(ui: Ui, cwd: string, scope: SettingScope): Promis
     );
     screenRef = new SettingsScreen(scopeTitle(writeScope), list);
     return screenRef;
-  });
+  }, OVERLAY_OPTS);
 }
 
 /**

package/extensions/llm-wiki/lib/source-extractors.ts

@@ -1,5 +1,4 @@
 import { open } from "node:fs/promises";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
 import { NodeHtmlMarkdown } from "node-html-markdown";
 import { type ExecApi, exec } from "./utils.js";
 
@@ -270,8 +269,8 @@ async function extractWithMarkItDown(
     if (!(await hasMarkItDown(pi, signal))) return "";
     const mdResult = await exec(
       pi,
-      "sh",
-      ["-c", `uvx --from 'markitdown[docx,pdf]' markitdown "${source}" 2>/dev/null || echo ""`],
+      "uvx",
+      ["--from", "markitdown[docx,pdf]", "markitdown", source],
       { signal, timeout: markitdownTimeoutMs() },
     );
     return mdResult.stdout.trim() ? mdResult.stdout : "";
@@ -281,13 +280,21 @@ async function extractWithMarkItDown(
 }
 
 async function hasMarkItDown(pi: ExecApi, signal?: AbortSignal): Promise<boolean> {
-  const markitdown = await exec(
-    pi,
-    "sh",
-    ["-c", `which uvx >/dev/null 2>&1 && echo "yes" || echo "no"`],
-    { signal },
-  );
-  return markitdown.stdout.trim() === "yes";
+  // Probe without shell to avoid CWE-78; try which/where then uvx --version
+  try {
+    await exec(pi, "which", ["uvx"], { signal });
+    return true;
+  } catch {}
+  try {
+    await exec(pi, "where", ["uvx"], { signal });
+    return true;
+  } catch {}
+  try {
+    await exec(pi, "uvx", ["--version"], { signal });
+    return true;
+  } catch {
+    return false;
+  }
 }
 
 async function fetchTextUrl(pi: ExecApi, url: string, signal?: AbortSignal): Promise<string> {
@@ -350,7 +357,8 @@ function decodeHtmlEntities(text: string): string {
     };
     const lower = entity.toLowerCase();
     if (map[lower]) return map[lower];
-    if (lower.startsWith("&#")) return String.fromCodePoint(Number.parseInt(entity.slice(2, -1)));
+    if (lower.startsWith("&#"))
+      return String.fromCodePoint(Number.parseInt(entity.slice(2, -1), 10));
     return entity;
   });
 }
@@ -369,7 +377,7 @@ function xmlToMarkdown(xml: string): string {
   let prev = "";
   while (prev !== text) {
     prev = text;
-    text = text.replace(/<[a-zA-Z\/!?][^>]*>/g, "");
+    text = text.replace(/<[a-zA-Z/!?][^>]*>/g, "");
   }
   text = text.replace(/</g, "");
 

package/extensions/llm-wiki/lib/source-packet.ts

@@ -1,23 +1,22 @@
 import { mkdirSync, writeFileSync } from "node:fs";
 import { copyFile } from "node:fs/promises";
-import { extname, join } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import { basename, extname, join } from "node:path";
 import { createKnowledgeDocument, serializeKnowledgeDocument } from "./knowledge-document.js";
 import { appendEvent } from "./metadata.js";
 import {
-  type ExtractedContent,
   binaryExtractionFailureMessage,
   detectBinaryMagicBytes,
+  type ExtractedContent,
   extractUrlContent,
   fileExtractorFor,
 } from "./source-extractors.js";
 import {
   type ExecApi,
-  type VaultPaths,
   exec,
   fmtDate,
   nextSourceId,
   readText,
+  type VaultPaths,
   writeJson,
 } from "./utils.js";
 import { assertWritableVault } from "./vault-format.js";
@@ -112,7 +111,7 @@ function urlCaptureSource(pi: ExecApi, url: string, signal?: AbortSignal): Captu
 }
 
 function fileCaptureSource(pi: ExecApi, filePath: string, signal?: AbortSignal): CaptureSource {
-  const fileName = filePath.split("/").pop() || "unknown";
+  const fileName = originalFileNameForPath(filePath);
   const extractor = fileExtractorFor(filePath);
   const content = extractor.shouldReadText ? readText(filePath) : "";
 
@@ -256,6 +255,15 @@ function originalFileNameForUrl(url: string): string {
   return "source.html";
 }
 
+/**
+ * Original-artifact name for a local file capture. Uses platform basename so
+ * Windows absolute paths (drive colon + backslashes) cannot leak into the
+ * packet/original file name (issue #204).
+ */
+export function originalFileNameForPath(filePath: string): string {
+  return basename(filePath) || "unknown";
+}
+
 function contentExtractionFailureMessage(source: string): string {
   return `_Content could not be extracted from ${source}_\n`;
 }

package/extensions/llm-wiki/lib/subagent.ts

@@ -3,8 +3,8 @@ import {
   type AgentLoopConfig,
   type AgentTool,
   agentLoop,
-} from "@mariozechner/pi-agent-core";
-import type { Api, Message, Model } from "@mariozechner/pi-ai";
+} from "@earendil-works/pi-agent-core";
+import type { Api, Message, Model } from "@earendil-works/pi-ai";
 
 /**
  * Thin sub-agent runner for the LLM Wiki background lane (issue #64, part of #63).

package/extensions/llm-wiki/lib/task-config.ts

@@ -2,8 +2,8 @@ import { mkdirSync, readFileSync, writeFileSync } from "node:fs";
 import { dirname } from "node:path";
 import { parse as parseYaml } from "yaml";
 import {
-  type HostKind,
   detectHost,
+  type HostKind,
   listGlobalSettingsFiles,
   listProjectSettingsFiles,
   resolveGlobalSettingsPath,

package/extensions/llm-wiki/lib/tools.ts

@@ -1,6 +1,6 @@
-import { existsSync, mkdirSync, readFileSync, readdirSync, writeFileSync } from "node:fs";
+import { existsSync, mkdirSync, readdirSync, readFileSync, writeFileSync } from "node:fs";
 import { join, relative } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { Type } from "typebox";
 import { bootstrapVault } from "./bootstrap.js";
 import { launchEmbedPages, reindexEmbeddings, resolveEmbedder } from "./embeddings.js";
@@ -17,18 +17,18 @@ import {
   buildWikilinkIndex,
 } from "./knowledge-links.js";
 import { repairLegacyKnowledgeDocuments } from "./legacy-repair.js";
-import { type Registry, appendEvent, rebuildMetadata, rebuildMetadataLight } from "./metadata.js";
+import { appendEvent, type Registry, rebuildMetadata, rebuildMetadataLight } from "./metadata.js";
 import type { Runtime } from "./runtime.js";
 import { captureFile, captureText, captureUrl } from "./source-packet.js";
 import { loadTaskConfig, parseModelRef, resolveWikilinkValidation } from "./task-config.js";
 import {
-  type VaultPaths,
   detectVaultFormat,
   fmtDate,
   getVaultPaths,
   readJson,
   resolveVaultPaths,
   slugify,
+  type VaultPaths,
   writeJson,
 } from "./utils.js";
 import {
@@ -1013,6 +1013,9 @@ function runWikiLint(paths: VaultPaths, autoFix: boolean): string {
   // The gap snapshot is generated discovery metadata consumed by wiki_status:
   // persist it on every successful lint so status never reports a stale count.
   // Corrective actions below (report, event, meta rebuild) stay autoFix-only.
+  // mkdir mirrors the autoFix report write below: on a fresh checkout the
+  // gitignored .discoveries dir does not exist yet (issue #203).
+  mkdirSync(paths.discoveries, { recursive: true });
   writeJson(join(paths.discoveries, "gaps.json"), {
     gaps,
     generated: new Date().toISOString(),

package/extensions/llm-wiki/lib/trajectories-command.ts

@@ -1,4 +1,4 @@
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { loadTaskConfig, persistTrajectoriesEnabled, trajectoriesEnabled } from "./task-config.js";
 
 /**

package/extensions/llm-wiki/lib/trajectory.ts

@@ -1,15 +1,15 @@
-import { existsSync, mkdirSync, readFileSync, readdirSync, writeFileSync } from "node:fs";
+import { existsSync, mkdirSync, readdirSync, readFileSync, writeFileSync } from "node:fs";
 import { join } from "node:path";
-import type { ExtensionAPI, ExtensionContext } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI, ExtensionContext } from "@earendil-works/pi-coding-agent";
 import { Type } from "typebox";
 import { appendEvent, rebuildMetadataLight } from "./metadata.js";
 import { searchWikiLayered } from "./recall.js";
 import {
-  type VaultPaths,
   fmtDate,
   nextTrajectoryId,
   readJson,
   resolveVaultPaths,
+  type VaultPaths,
   writeJson,
 } from "./utils.js";
 import { assertWritableVault, inspectWritableVault } from "./vault-format.js";

package/extensions/llm-wiki/lib/utils.ts

@@ -2,8 +2,8 @@ import {
   existsSync,
   lstatSync,
   mkdirSync,
-  readFileSync,
   readdirSync,
+  readFileSync,
   readlinkSync,
   realpathSync,
   renameSync,
@@ -12,7 +12,7 @@ import {
 } from "node:fs";
 import { homedir } from "node:os";
 import { basename, dirname, isAbsolute, join, relative, sep } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 
 /**
  * Vault utility functions for the LLM Wiki extension.

package/extensions/llm-wiki/lib/vault-format.ts

@@ -1,4 +1,4 @@
-import { existsSync, lstatSync, readFileSync, readdirSync } from "node:fs";
+import { existsSync, lstatSync, readdirSync, readFileSync } from "node:fs";
 import { isAbsolute, join, relative, sep } from "node:path";
 import {
   type KnowledgeDiagnostic,
@@ -6,7 +6,7 @@ import {
   parseKnowledgeDocument,
   parseMarkdownFrontmatter,
 } from "./knowledge-document.js";
-import { type VaultPaths, relativePhysicalPath } from "./utils.js";
+import { relativePhysicalPath, type VaultPaths } from "./utils.js";
 
 export type KnowledgeFormat = "legacy" | "okf-0.2";
 

package/extensions/llm-wiki/lib/visible-status.ts

@@ -1,4 +1,4 @@
-import { MODEL_STATUS_KEY, formatActiveModelLabel } from "./model-command.js";
+import { formatActiveModelLabel, MODEL_STATUS_KEY } from "./model-command.js";
 import type { Runtime } from "./runtime.js";
 import { noticesEnabled } from "./task-config.js";
 

package/extensions/llm-wiki/lib/wiki-service.ts

@@ -2,8 +2,8 @@ import { existsSync } from "node:fs";
 import { join } from "node:path";
 import type { KnowledgeDiagnostic } from "./knowledge-document.js";
 import type { Registry } from "./metadata.js";
-import { readJson } from "./utils.js";
 import type { VaultPaths } from "./utils.js";
+import { readJson } from "./utils.js";
 import type { KnowledgeFormat } from "./vault-format.js";
 import {
   compareCodePoint,

package/mcp/operations.ts

@@ -7,23 +7,23 @@
  */
 
 import { join } from "node:path";
-import type { ExtensionAPI } from "@mariozechner/pi-coding-agent";
+import type { ExtensionAPI } from "@earendil-works/pi-coding-agent";
 import { bootstrapVault } from "../extensions/llm-wiki/lib/bootstrap.js";
 import {
-  type WikilinkValidationMode,
   applyWikilinkGate,
   buildWikilinkIndex,
+  type WikilinkValidationMode,
 } from "../extensions/llm-wiki/lib/knowledge-links.js";
 import { type ProjectionResult, rebuildMetadata } from "../extensions/llm-wiki/lib/metadata.js";
 import { type RecallResult, searchWikiLayered } from "../extensions/llm-wiki/lib/recall.js";
 import { saveInsight } from "../extensions/llm-wiki/lib/retro.js";
 import { captureFile, captureText, captureUrl } from "../extensions/llm-wiki/lib/source-packet.js";
 import { resolveWikilinkValidation } from "../extensions/llm-wiki/lib/task-config.js";
-import { type VaultPaths, readJson } from "../extensions/llm-wiki/lib/utils.js";
+import { readJson, type VaultPaths } from "../extensions/llm-wiki/lib/utils.js";
 import {
-  VaultWriteError,
   inspectVaultFormat,
   inspectWritableVault,
+  VaultWriteError,
 } from "../extensions/llm-wiki/lib/vault-format.js";
 import { getWikiStatus, searchRegistry } from "../extensions/llm-wiki/lib/wiki-service.js";
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@zosmaai/pi-llm-wiki",
-  "version": "0.11.7",
+  "version": "0.12.0",
   "description": "Self-maintaining LLM Wiki for Pi — Karpathy-pattern knowledge base with immutable source capture, automated ingestion, search, linting, and Obsidian-compatible vault. auto-updating personal & company wiki.",
   "keywords": [
     "pi",
@@ -75,14 +75,14 @@
     ]
   },
   "peerDependencies": {
-    "@mariozechner/pi-coding-agent": "*"
+    "@earendil-works/pi-coding-agent": ">=0.78.1"
   },
   "engines": {
     "node": ">=18"
   },
   "dependencies": {
     "@cfworker/json-schema": "^4.1.1",
-    "@mariozechner/pi-tui": "0.70.6",
+    "@earendil-works/pi-tui": "0.84.4",
     "@modelcontextprotocol/server": "^2.0.0",
     "mdast-util-from-markdown": "^2.0.3",
     "node-html-markdown": "^2.0.0",
@@ -92,16 +92,16 @@
   },
   "devDependencies": {
     "@astrojs/starlight": "^0.41.10",
-    "@biomejs/biome": "^1.9.4",
-    "@mariozechner/pi-agent-core": "^0.70.2",
-    "@mariozechner/pi-ai": "^0.70.2",
-    "@mariozechner/pi-coding-agent": "^0.70.2",
+    "@biomejs/biome": "^2.5.11",
+    "@earendil-works/pi-agent-core": "^0.78.1",
+    "@earendil-works/pi-ai": "^0.78.1",
+    "@earendil-works/pi-coding-agent": "^0.78.1",
     "@mermaid-js/mermaid-cli": "^11.12.0",
     "@types/mdast": "^4.0.4",
-    "@types/node": "^22",
+    "@types/node": "^26",
     "@vitest/coverage-v8": "^3.2.4",
     "astro": "^7.2.9",
-    "typescript": "^5.7.0",
+    "typescript": "^7.0.2",
     "vitest": "^3.0.0"
   },
   "scripts": {