@zigrivers/scaffold 3.5.0 → 3.5.2

package/dist/cli/commands/run.js

@@ -4,19 +4,15 @@ import { StateManager } from '../../state/state-manager.js';
 import { acquireLock, releaseLock } from '../../state/lock-manager.js';
 import { analyzeCrash } from '../../state/completion.js';
 import { AssemblyEngine } from '../../core/assembly/engine.js';
-import { discoverAllMetaPrompts } from '../../core/assembly/meta-prompt-loader.js';
-import { getPackagePipelineDir, getPackageMethodologyDir, getPackageKnowledgeDir, getPackageToolsDir, } from '../../utils/fs.js';
+import { getPackageKnowledgeDir } from '../../utils/fs.js';
 import { buildIndexWithOverrides, loadEntries } from '../../core/assembly/knowledge-loader.js';
 import { loadInstructions } from '../../core/assembly/instruction-loader.js';
 import { resolveDepth } from '../../core/assembly/depth-resolver.js';
 import { detectUpdateMode } from '../../core/assembly/update-mode.js';
 import { detectMethodologyChange } from '../../core/assembly/methodology-change.js';
-import { loadAllPresets } from '../../core/assembly/preset-loader.js';
-import { resolveOverlayState } from '../../core/assembly/overlay-state-resolver.js';
-import { loadConfig } from '../../config/loader.js';
-import { buildGraph } from '../../core/dependency/graph.js';
 import { detectCycles, topologicalSort } from '../../core/dependency/dependency.js';
-import { computeEligible } from '../../core/dependency/eligibility.js';
+import { loadPipelineContext } from '../../core/pipeline/context.js';
+import { resolvePipeline } from '../../core/pipeline/resolver.js';
 import { findProjectRoot } from '../../cli/middleware/project-root.js';
 import { createOutputContext } from '../../cli/output/context.js';
 import { displayErrors } from '../../cli/output/error-display.js';
@@ -60,15 +56,18 @@ const runCommand = {
         const outputMode = resolveOutputMode(argv);
         const output = createOutputContext(outputMode);
         // -----------------------------------------------------------------------
-        // Step 2: Discover meta-prompts and pipeline (before config so we have
-        //         real step names for Phase-6 custom.steps validation)
+        // Step 2: Load pipeline context and resolve overlay/graph
         // -----------------------------------------------------------------------
-        const pipelineDir = getPackagePipelineDir(projectRoot);
-        const toolsDir = getPackageToolsDir(projectRoot);
-        const metaPrompts = discoverAllMetaPrompts(pipelineDir, toolsDir);
-        const metaPrompt = metaPrompts.get(step);
+        const context = loadPipelineContext(projectRoot, { includeTools: true });
+        if (!context.config) {
+            displayErrors(context.configErrors, context.configWarnings, output);
+            process.exit(1);
+            return;
+        }
+        const pipeline = resolvePipeline(context, { output });
+        const metaPrompt = context.metaPrompts.get(step);
         if (!metaPrompt) {
-            const candidates = [...metaPrompts.keys()];
+            const candidates = [...context.metaPrompts.keys()];
             const suggestion = findClosestMatch(step, candidates, 3);
             const suggestionText = suggestion ? ` Did you mean '${suggestion}'?` : '';
             output.error({
@@ -79,35 +78,6 @@ const runCommand = {
             });
             process.exit(1);
         }
-        const knownSteps = [...metaPrompts.keys()];
-        const { config, errors: configErrors } = loadConfig(projectRoot, knownSteps);
-        if (!config) {
-            displayErrors(configErrors, [], output);
-            process.exit(1);
-        }
-        const methodologyDir = getPackageMethodologyDir(projectRoot);
-        const presets = loadAllPresets(methodologyDir, [...metaPrompts.keys()]);
-        const preset = config.methodology === 'mvp'
-            ? presets.mvp
-            : config.methodology === 'custom'
-                ? presets.custom ?? presets.deep
-                : presets.deep;
-        const resolvedPreset = preset ?? {
-            name: 'deep',
-            description: 'Default deep methodology',
-            default_depth: 3,
-            steps: {},
-        };
-        // -----------------------------------------------------------------------
-        // Step 2b: Load and apply project-type overlay (if configured)
-        // -----------------------------------------------------------------------
-        const overlayState = resolveOverlayState({
-            config,
-            methodologyDir,
-            metaPrompts,
-            presetSteps: resolvedPreset.steps,
-            output,
-        });
         // -----------------------------------------------------------------------
         // Step 3: Acquire lock
         // -----------------------------------------------------------------------
@@ -133,11 +103,7 @@ const runCommand = {
         // -----------------------------------------------------------------------
         // Step 4: Load and validate state
         // -----------------------------------------------------------------------
-        const computeEligibleFn = (steps) => {
-            const graph = buildGraph([...metaPrompts.values()].map(m => m.frontmatter), new Map(Object.entries(overlayState.steps)));
-            return computeEligible(graph, steps);
-        };
-        const stateManager = new StateManager(projectRoot, computeEligibleFn);
+        const stateManager = new StateManager(projectRoot, pipeline.computeEligible);
         let state = stateManager.loadState();
         // Crash recovery: in_progress is non-null from a previous run
         if (state.in_progress !== null) {
@@ -183,8 +149,7 @@ const runCommand = {
         // -----------------------------------------------------------------------
         // Step 5: Check dependencies
         // -----------------------------------------------------------------------
-        const presetStepsMap = new Map(Object.entries(overlayState.steps));
-        const graph = buildGraph([...metaPrompts.values()].map(m => m.frontmatter), presetStepsMap);
+        const { graph } = pipeline;
         const cycles = detectCycles(graph);
         if (cycles.length > 0) {
             displayErrors(cycles, [], output);
@@ -196,7 +161,8 @@ const runCommand = {
         // Tools (category: 'tool') are not in the dependency graph — skip dep checking
         const isTool = metaPrompt.frontmatter.category === 'tool';
         const stepNode = isTool ? undefined : graph.nodes.get(step);
-        const deps = overlayState.dependencies[step] ?? stepNode?.dependencies ?? metaPrompt.frontmatter.dependencies ?? [];
+        const deps = pipeline.overlay.dependencies[step]
+            ?? stepNode?.dependencies ?? metaPrompt.frontmatter.dependencies ?? [];
         if (!isTool) {
             const unmetDeps = deps.filter(dep => {
                 // Overlay-disabled deps are treated as satisfied (matches eligibility.ts)
@@ -222,7 +188,7 @@ const runCommand = {
         // Step 6: Check update mode and depth downgrade
         // -----------------------------------------------------------------------
         const cliDepth = argv.depth !== undefined ? argv.depth : undefined;
-        const { depth, provenance } = resolveDepth(step, config, resolvedPreset, cliDepth);
+        const { depth, provenance } = resolveDepth(step, context.config, pipeline.preset, cliDepth);
         const updateModeResult = detectUpdateMode({ step, state, currentDepth: depth, projectRoot });
         if (updateModeResult.isUpdateMode) {
             if (!argv.force) {
@@ -257,7 +223,7 @@ const runCommand = {
             }
         }
         // Check methodology change
-        const methodologyChangeResult = detectMethodologyChange({ state, config });
+        const methodologyChangeResult = detectMethodologyChange({ state, config: context.config });
         for (const w of methodologyChangeResult.warnings) {
             output.warn(w);
         }
@@ -276,7 +242,7 @@ const runCommand = {
             // -----------------------------------------------------------------------
             const { instructions } = loadInstructions(projectRoot, step, argv.instructions);
             const kbIndex = buildIndexWithOverrides(projectRoot, getPackageKnowledgeDir(projectRoot));
-            const { entries: knowledgeEntries, warnings: kbWarnings } = loadEntries(kbIndex, overlayState.knowledge[step] ?? metaPrompt.frontmatter.knowledgeBase ?? []);
+            const { entries: knowledgeEntries, warnings: kbWarnings } = loadEntries(kbIndex, pipeline.overlay.knowledge[step] ?? metaPrompt.frontmatter.knowledgeBase ?? []);
             for (const w of kbWarnings) {
                 output.warn(w);
             }
@@ -307,7 +273,7 @@ const runCommand = {
             // Gather artifacts from reads (optional cross-cutting references)
             // Note: graph defaults missing steps to enabled:true, which may not reflect
             // custom config overrides. This is a pre-existing graph builder limitation.
-            const reads = overlayState.reads[step] ?? metaPrompt.frontmatter.reads ?? [];
+            const reads = pipeline.overlay.reads[step] ?? metaPrompt.frontmatter.reads ?? [];
             for (const readStep of reads) {
                 // Check dependency graph for enablement (overlay-disabled steps)
                 const readNode = graph?.nodes.get(readStep);
@@ -356,7 +322,7 @@ const runCommand = {
             // -----------------------------------------------------------------------
             const engine = new AssemblyEngine();
             const assemblyResult = engine.assemble(step, {
-                config,
+                config: context.config,
                 state,
                 metaPrompt,
                 knowledgeEntries,
@@ -394,7 +360,7 @@ const runCommand = {
                     else {
                         // Reload state for next eligible
                         const stateForEligible = stateManager.loadState();
-                        const nextSteps = computeEligible(graph, stateForEligible.steps);
+                        const nextSteps = pipeline.computeEligible(stateForEligible.steps);
                         output.result({
                             step,
                             status: 'in_progress',
@@ -449,7 +415,7 @@ const runCommand = {
             // Step 12: Show next eligible steps
             // -----------------------------------------------------------------------
             const finalState = stateManager.loadState();
-            const nextSteps = computeEligible(graph, finalState.steps);
+            const nextSteps = pipeline.computeEligible(finalState.steps);
             if (outputMode === 'interactive') {
                 if (nextSteps.length > 0) {
                     output.info(`Next eligible: ${nextSteps.join(', ')}`);

package/dist/cli/commands/run.js.map

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package/dist/cli/commands/run.test.js

@@ -25,6 +25,7 @@ vi.mock('../../core/assembly/engine.js', () => {
     return { AssemblyEngine: AssemblyEngineMock };
 });
 vi.mock('../../core/assembly/meta-prompt-loader.js', () => ({
+    discoverMetaPrompts: vi.fn(),
     discoverAllMetaPrompts: vi.fn(),
     loadMetaPrompt: vi.fn(),
 }));
@@ -59,6 +60,14 @@ vi.mock('../../core/assembly/overlay-loader.js', () => ({
 vi.mock('../../core/assembly/overlay-resolver.js', () => ({
     applyOverlay: vi.fn(),
 }));
+vi.mock('../../core/assembly/overlay-state-resolver.js', () => ({
+    resolveOverlayState: vi.fn(({ presetSteps }) => ({
+        steps: presetSteps,
+        knowledge: {},
+        reads: {},
+        dependencies: {},
+    })),
+}));
 vi.mock('node:fs', async () => {
     const actual = await vi.importActual('node:fs');
     return {
@@ -103,7 +112,7 @@ import { StateManager } from '../../state/state-manager.js';
 import { acquireLock, releaseLock } from '../../state/lock-manager.js';
 import { analyzeCrash } from '../../state/completion.js';
 import { AssemblyEngine } from '../../core/assembly/engine.js';
-import { discoverAllMetaPrompts } from '../../core/assembly/meta-prompt-loader.js';
+import { discoverMetaPrompts, discoverAllMetaPrompts } from '../../core/assembly/meta-prompt-loader.js';
 import { buildIndexWithOverrides, loadEntries } from '../../core/assembly/knowledge-loader.js';
 import { loadInstructions } from '../../core/assembly/instruction-loader.js';
 import { resolveDepth } from '../../core/assembly/depth-resolver.js';
@@ -111,7 +120,7 @@ import { detectUpdateMode } from '../../core/assembly/update-mode.js';
 import { detectMethodologyChange } from '../../core/assembly/methodology-change.js';
 import { loadAllPresets } from '../../core/assembly/preset-loader.js';
 import { loadOverlay } from '../../core/assembly/overlay-loader.js';
-import { applyOverlay } from '../../core/assembly/overlay-resolver.js';
+import { resolveOverlayState } from '../../core/assembly/overlay-state-resolver.js';
 import { loadConfig } from '../../config/loader.js';
 import { buildGraph } from '../../core/dependency/graph.js';
 import { detectCycles, topologicalSort } from '../../core/dependency/dependency.js';
@@ -257,7 +266,9 @@ beforeEach(() => {
     const config = makeConfig();
     vi.mocked(loadConfig).mockReturnValue({ config, errors: [], warnings: [] });
     const metaPrompt = makeMetaPrompt();
-    vi.mocked(discoverAllMetaPrompts).mockReturnValue(new Map([['create-prd', metaPrompt]]));
+    const defaultMetaPromptMap = new Map([['create-prd', metaPrompt]]);
+    vi.mocked(discoverMetaPrompts).mockReturnValue(defaultMetaPromptMap);
+    vi.mocked(discoverAllMetaPrompts).mockReturnValue(defaultMetaPromptMap);
     const preset = makePreset();
     vi.mocked(loadAllPresets).mockReturnValue({
         deep: preset,
@@ -349,15 +360,16 @@ describe('run command handler', () => {
     });
     describe('Step 2: discover pipeline', () => {
         it('exits 1 when step is not found in pipeline', async () => {
+            vi.mocked(discoverMetaPrompts).mockReturnValue(new Map());
             vi.mocked(discoverAllMetaPrompts).mockReturnValue(new Map());
             await expect(invokeHandler({ step: 'unknown-step', _: ['run'] }))
                 .rejects.toThrow('process.exit called');
             expect(exitSpy).toHaveBeenCalledWith(1);
         });
         it('includes fuzzy match suggestion in error when step not found', async () => {
-            vi.mocked(discoverAllMetaPrompts).mockReturnValue(new Map([
-                ['create-prd', makeMetaPrompt()],
-            ]));
+            const map = new Map([['create-prd', makeMetaPrompt()]]);
+            vi.mocked(discoverMetaPrompts).mockReturnValue(map);
+            vi.mocked(discoverAllMetaPrompts).mockReturnValue(map);
             await expect(invokeHandler({ step: 'create-pr', _: ['run'] }))
                 .rejects.toThrow('process.exit called');
             // Should have called output.error or displayErrors
@@ -420,10 +432,12 @@ describe('run command handler', () => {
                 frontmatter: makeFrontmatter({ name: 'create-arch', dependencies: ['create-prd'] }),
                 stepName: 'create-arch',
             });
-            vi.mocked(discoverAllMetaPrompts).mockReturnValue(new Map([
+            const depMap = new Map([
                 ['create-prd', makeMetaPrompt()],
                 ['create-arch', metaPrompt],
-            ]));
+            ]);
+            vi.mocked(discoverMetaPrompts).mockReturnValue(depMap);
+            vi.mocked(discoverAllMetaPrompts).mockReturnValue(depMap);
             const state = makeState({
                 'create-prd': { status: 'pending', source: 'pipeline', produces: [] },
                 'create-arch': { status: 'pending', source: 'pipeline', produces: [] },
@@ -765,10 +779,12 @@ describe('run command handler', () => {
                     outputs: ['docs/prd.md'],
                 }),
             });
-            vi.mocked(discoverAllMetaPrompts).mockReturnValue(new Map([
+            const artMap = new Map([
                 ['setup-project', setupMeta],
                 ['create-prd', prdMeta],
-            ]));
+            ]);
+            vi.mocked(discoverMetaPrompts).mockReturnValue(artMap);
+            vi.mocked(discoverAllMetaPrompts).mockReturnValue(artMap);
             // setup-project is completed with produces
             const state = makeState({
                 'setup-project': {
@@ -848,10 +864,12 @@ describe('run command handler', () => {
                     outputs: ['docs/prd.md'],
                 }),
             });
-            vi.mocked(discoverAllMetaPrompts).mockReturnValue(new Map([
+            const readsMap1 = new Map([
                 ['setup-project', setupMeta],
                 ['create-prd', prdMeta],
-            ]));
+            ]);
+            vi.mocked(discoverMetaPrompts).mockReturnValue(readsMap1);
+            vi.mocked(discoverAllMetaPrompts).mockReturnValue(readsMap1);
             const state = makeState({
                 'setup-project': {
                     status: 'completed',
@@ -920,10 +938,12 @@ describe('run command handler', () => {
                     outputs: ['docs/prd.md'],
                 }),
             });
-            vi.mocked(discoverAllMetaPrompts).mockReturnValue(new Map([
+            const readsMap2 = new Map([
                 ['setup-project', setupMeta],
                 ['create-prd', prdMeta],
-            ]));
+            ]);
+            vi.mocked(discoverMetaPrompts).mockReturnValue(readsMap2);
+            vi.mocked(discoverAllMetaPrompts).mockReturnValue(readsMap2);
             // setup-project is pending (not completed)
             const state = makeState({
                 'setup-project': { status: 'pending', source: 'pipeline', produces: ['docs/setup.md'] },
@@ -972,10 +992,12 @@ describe('run command handler', () => {
                     outputs: ['docs/prd.md'],
                 }),
             });
-            vi.mocked(discoverAllMetaPrompts).mockReturnValue(new Map([
+            const readsMap3 = new Map([
                 ['setup-project', setupMeta],
                 ['create-prd', prdMeta],
-            ]));
+            ]);
+            vi.mocked(discoverMetaPrompts).mockReturnValue(readsMap3);
+            vi.mocked(discoverAllMetaPrompts).mockReturnValue(readsMap3);
             const state = makeState({
                 'setup-project': {
                     status: 'completed', source: 'pipeline',
@@ -1025,10 +1047,12 @@ describe('run command handler', () => {
                     outputs: ['docs/prd.md'],
                 }),
             });
-            vi.mocked(discoverAllMetaPrompts).mockReturnValue(new Map([
+            const dedupMap = new Map([
                 ['setup-project', setupMeta],
                 ['create-prd', prdMeta],
-            ]));
+            ]);
+            vi.mocked(discoverMetaPrompts).mockReturnValue(dedupMap);
+            vi.mocked(discoverAllMetaPrompts).mockReturnValue(dedupMap);
             const state = makeState({
                 'setup-project': {
                     status: 'completed',
@@ -1097,10 +1121,12 @@ describe('run command handler', () => {
                     outputs: ['docs/arch.md'],
                 }),
             });
-            vi.mocked(discoverAllMetaPrompts).mockReturnValue(new Map([
+            const bypassMap = new Map([
                 ['create-prd', prdMeta],
                 ['create-arch', archMeta],
-            ]));
+            ]);
+            vi.mocked(discoverMetaPrompts).mockReturnValue(bypassMap);
+            vi.mocked(discoverAllMetaPrompts).mockReturnValue(bypassMap);
             const state = makeState({
                 'create-prd': { status: 'pending', source: 'pipeline', produces: [] },
                 'create-arch': { status: 'pending', source: 'pipeline', produces: [] },
@@ -1130,40 +1156,16 @@ describe('run command handler', () => {
         });
     });
     describe('overlay application', () => {
-        it('applies overlay when config has projectType, changing step enablement', async () => {
+        it('applies overlay when resolveOverlayState returns disabled steps', async () => {
             // Config with projectType: 'game'
             const config = makeConfig({
                 project: { projectType: 'game' },
             });
             vi.mocked(loadConfig).mockReturnValue({ config, errors: [], warnings: [] });
-            // fs.existsSync must return true for the overlay file so the resolver proceeds
-            vi.mocked(fs.existsSync).mockImplementation((p) => {
-                if (String(p).includes('game-overlay.yml'))
-                    return true;
-                return false;
-            });
-            const gameOverlay = {
-                name: 'game',
-                description: 'Game overlay',
-                projectType: 'game',
-                stepOverrides: {
-                    'create-prd': { enabled: false },
-                    'game-design-document': { enabled: true },
-                },
-                knowledgeOverrides: {},
-                readsOverrides: {},
-                dependencyOverrides: {},
-            };
-            vi.mocked(loadOverlay).mockReturnValue({
-                overlay: gameOverlay,
-                errors: [],
-                warnings: [],
-            });
-            // applyOverlay returns merged data with create-prd disabled
-            vi.mocked(applyOverlay).mockReturnValue({
+            // Mock resolveOverlayState to return overlay-merged data with create-prd disabled
+            vi.mocked(resolveOverlayState).mockReturnValue({
                 steps: {
                     'create-prd': { enabled: false },
-                    'game-design-document': { enabled: true },
                 },
                 knowledge: { 'create-prd': [] },
                 reads: { 'create-prd': [] },
@@ -1172,14 +1174,8 @@ describe('run command handler', () => {
             vi.mocked(resolveOutputMode).mockReturnValue('auto');
             await expect(invokeHandler({ step: 'create-prd', _: ['run'], auto: true }))
                 .rejects.toThrow('process.exit called');
-            // Verify loadOverlay was called
-            expect(loadOverlay).toHaveBeenCalledWith(expect.stringContaining('game-overlay.yml'));
-            // Verify applyOverlay was called with the overlay
-            expect(applyOverlay).toHaveBeenCalledWith(expect.any(Object), // preset steps
-            expect.any(Object), // knowledgeMap
-            expect.any(Object), // readsMap
-            expect.any(Object), // dependencyMap
-            gameOverlay);
+            // Verify resolveOverlayState was called (overlay resolution delegated to resolver)
+            expect(resolveOverlayState).toHaveBeenCalled();
             // Verify buildGraph received merged steps (with overlay applied)
             expect(buildGraph).toHaveBeenCalledWith(expect.any(Array), expect.any(Map));
             // The presetStepsMap passed to buildGraph should contain overlay-merged steps
@@ -1187,14 +1183,15 @@ describe('run command handler', () => {
             const stepsMap = buildGraphCall[1];
             expect(stepsMap.get('create-prd')).toEqual({ enabled: false });
         });
-        it('does not call loadOverlay when config has no projectType', async () => {
+        it('passes preset steps through when config has no projectType', async () => {
             const config = makeConfig(); // no project.projectType
             vi.mocked(loadConfig).mockReturnValue({ config, errors: [], warnings: [] });
             vi.mocked(resolveOutputMode).mockReturnValue('auto');
             await expect(invokeHandler({ step: 'create-prd', _: ['run'], auto: true }))
                 .rejects.toThrow('process.exit called');
-            expect(loadOverlay).not.toHaveBeenCalled();
-            expect(applyOverlay).not.toHaveBeenCalled();
+            // resolveOverlayState is still called (by the resolver) but with no projectType
+            // it returns the preset steps unchanged
+            expect(resolveOverlayState).toHaveBeenCalled();
         });
     });
 });