@zenalexa/unicli 0.221.0 → 0.222.0

package/dist/adapters/pmlr/proceedings.js

@@ -0,0 +1,139 @@
+/**
+ * @owner       src::adapters::pmlr::proceedings
+ * @does        Registers Proceedings of Machine Learning Research volume search using official citeproc.yaml metadata.
+ * @needs       proceedings.mlr.press citeproc.yaml files, js-yaml, src/registry.ts
+ * @feeds       src/commands/scholar.ts via scholar.search, scholar.get, scholar.pdf, and scholar.venue
+ * @breaks      Missing volume metadata or citeproc drift surfaces as explicit adapter errors.
+ * @invariants  Volume is explicit; rows are filtered locally from official YAML metadata, not scraped from rendered cards.
+ * @side-effects HTTPS egress to proceedings.mlr.press only
+ * @perf        O(N) over one proceedings volume
+ * @concurrency safe
+ * @test        tests/unit/adapters/scholar-sources.test.ts
+ * @stability   experimental
+ * @since       2026-05-19
+ */
+import yaml from "js-yaml";
+import { cli, Strategy } from "../../registry.js";
+function str(value) {
+    return typeof value === "string" ? value.trim() : "";
+}
+function authors(value) {
+    if (!Array.isArray(value))
+        return undefined;
+    const out = value
+        .map((person) => [person.given, person.family].map(str).filter(Boolean).join(" "))
+        .filter(Boolean);
+    return out.length > 0 ? out : undefined;
+}
+function issuedYear(entry) {
+    const first = entry.issued?.["date-parts"]?.[0];
+    return typeof first === "number" && Number.isFinite(first)
+        ? first
+        : undefined;
+}
+export function parsePmlrCiteproc(text) {
+    const parsed = yaml.load(text);
+    return Array.isArray(parsed) ? parsed : [];
+}
+export function mapPmlrEntry(entry, source) {
+    const id = str(entry.id);
+    if (!id)
+        throw new Error("PMLR entry did not include id.");
+    return {
+        id,
+        title: str(entry.title),
+        abstract: str(entry.abstract) || undefined,
+        authors: authors(entry.author),
+        year: issuedYear(entry),
+        venue: str(entry["container-title"]) || undefined,
+        type: entry.volume ? `pmlr:${String(entry.volume)}` : "pmlr",
+        pdf_url: str(entry.PDF) || undefined,
+        source_adapter: source,
+        source_url: str(entry.URL) || undefined,
+        retrieved_at: new Date().toISOString(),
+    };
+}
+function requireVolume(value) {
+    const raw = String(value ?? "")
+        .trim()
+        .replace(/^v/i, "");
+    if (!/^\d+$/.test(raw))
+        throw new Error(`pmlr volume "${String(value)}" is not valid.`);
+    return raw;
+}
+async function fetchVolume(volume) {
+    const response = await fetch(`https://proceedings.mlr.press/v${volume}/assets/bib/citeproc.yaml`, {
+        headers: {
+            Accept: "application/x-yaml,text/yaml,text/plain",
+            "User-Agent": "unicli-pmlr/1.0 (https://github.com/olo-dot-io/Uni-CLI)",
+        },
+    });
+    if (response.status === 404)
+        throw new Error(`PMLR volume v${volume} returned no metadata.`);
+    if (!response.ok)
+        throw new Error(`PMLR volume v${volume} returned HTTP ${response.status}.`);
+    return parsePmlrCiteproc(await response.text());
+}
+cli({
+    site: "pmlr",
+    name: "search",
+    description: "Search a PMLR proceedings volume (e.g. v235 for ICML 2024)",
+    domain: "proceedings.mlr.press",
+    strategy: Strategy.PUBLIC,
+    args: [
+        { name: "query", type: "str", required: true, positional: true },
+        { name: "volume", type: "str", default: "235" },
+        { name: "limit", type: "int", default: 20 },
+    ],
+    columns: ["id", "title", "authors", "year", "venue", "pdf_url", "source_url"],
+    capabilities: [
+        "http.fetch",
+        "scholar.search",
+        "scholar.venue",
+        "scholar.pdf",
+    ],
+    func: async (_page, kwargs) => {
+        const query = String(kwargs.query ?? "")
+            .trim()
+            .toLowerCase();
+        if (!query)
+            throw new Error("pmlr search query cannot be empty.");
+        const volume = requireVolume(kwargs.volume);
+        const limit = Math.min(Math.max(Number(kwargs.limit ?? 20), 1), 200);
+        const rows = (await fetchVolume(volume))
+            .map((entry) => mapPmlrEntry(entry, "pmlr"))
+            .filter((row) => `${row.title} ${row.abstract ?? ""} ${row.authors?.join(" ") ?? ""}`
+            .toLowerCase()
+            .includes(query))
+            .slice(0, limit);
+        if (rows.length === 0)
+            throw new Error(`No PMLR v${volume} papers matched "${query}".`);
+        return rows;
+    },
+});
+cli({
+    site: "pmlr",
+    name: "paper",
+    description: "Fetch a PMLR paper by id inside a proceedings volume",
+    domain: "proceedings.mlr.press",
+    strategy: Strategy.PUBLIC,
+    args: [
+        { name: "id", type: "str", required: true, positional: true },
+        { name: "volume", type: "str", default: "235" },
+    ],
+    columns: ["id", "title", "authors", "year", "venue", "pdf_url", "source_url"],
+    capabilities: ["http.fetch", "scholar.get", "scholar.pdf"],
+    func: async (_page, kwargs) => {
+        const id = String(kwargs.id ?? kwargs.ref ?? "").trim();
+        if (!id)
+            throw new Error("pmlr paper id is required.");
+        const volume = requireVolume(kwargs.volume);
+        const row = (await fetchVolume(volume))
+            .map((entry) => mapPmlrEntry(entry, "pmlr"))
+            .find((entry) => entry.id === id);
+        if (!row)
+            throw new Error(`No PMLR v${volume} paper found with id "${id}".`);
+        return [row];
+    },
+});
+//# sourceMappingURL=proceedings.js.map

package/dist/adapters/pmlr/proceedings.js.map

@@ -0,0 +1 @@
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package/dist/adapters/pubmed/articles.js

@@ -222,6 +222,7 @@ cli({
         { name: "limit", type: "int", default: 20, description: "Max results" },
     ],
     columns: SUMMARY_COLUMNS,
+    capabilities: ["http.fetch", "scholar.search"],
     func: async (_page, kwargs) => {
         const query = requirePubMedText(kwargs.query, "query");
         const limit = requirePubMedLimit(kwargs.limit);
@@ -260,6 +261,7 @@ cli({
         },
     ],
     columns: ["field", "value"],
+    capabilities: ["http.fetch", "scholar.get"],
     func: async (_page, kwargs) => {
         const pmid = requirePmid(kwargs.pmid);
         const xml = String(await eutilsFetch("efetch", { id: pmid, rettype: "abstract" }, "xml"));
@@ -283,6 +285,7 @@ cli({
         { name: "limit", type: "int", default: 20, description: "Max results" },
     ],
     columns: SUMMARY_COLUMNS,
+    capabilities: ["http.fetch", "scholar.author", "scholar.search"],
     func: async (_page, kwargs) => {
         const name = requirePubMedText(kwargs.name, "author");
         const limit = requirePubMedLimit(kwargs.limit);
@@ -323,6 +326,7 @@ cli({
         { name: "limit", type: "int", default: 20, description: "Max results" },
     ],
     columns: SUMMARY_COLUMNS,
+    capabilities: ["http.fetch", "scholar.citations", "scholar.references"],
     func: async (_page, kwargs) => {
         const pmid = requirePmid(kwargs.pmid);
         const direction = requireChoice(kwargs.direction, ["citedby", "references"], "direction", "citedby");
@@ -358,6 +362,7 @@ cli({
         { name: "limit", type: "int", default: 20, description: "Max results" },
     ],
     columns: RELATED_COLUMNS,
+    capabilities: ["http.fetch", "scholar.search"],
     func: async (_page, kwargs) => {
         const pmid = requirePmid(kwargs.pmid);
         const limit = requirePubMedLimit(kwargs.limit);

package/dist/adapters/pubmed/articles.js.map

@@ -1 +1 @@
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package/dist/adapters/semantic-scholar/papers.d.ts

@@ -0,0 +1,36 @@
+/**
+ * @owner       src::adapters::semantic-scholar::papers
+ * @does        Registers Semantic Scholar Graph API paper search, detail, citations, references, and PDF discovery commands.
+ * @needs       api.semanticscholar.org Graph v1, optional SEMANTIC_SCHOLAR_API_KEY, src/registry.ts
+ * @feeds       src/commands/scholar.ts via scholar.* capability tags
+ * @breaks      Graph API rate limits or response-shape drift surface as explicit adapter errors; no cached fallback is used.
+ * @invariants  Paper references are normalized to Semantic Scholar's accepted DOI:/ARXIV:/paperId formats; output maps to ScholarlyWorkRecord.
+ * @side-effects HTTPS egress to api.semanticscholar.org only
+ * @perf        O(limit) JSON mapping per command
+ * @concurrency safe
+ * @test        tests/unit/adapters/scholar-sources.test.ts
+ * @stability   experimental
+ * @since       2026-05-19
+ */
+import type { ScholarlyWorkRecord } from "../../types/scholarly.js";
+interface S2Paper {
+    paperId?: unknown;
+    title?: unknown;
+    abstract?: unknown;
+    year?: unknown;
+    authors?: Array<{
+        name?: unknown;
+    }>;
+    citationCount?: unknown;
+    referenceCount?: unknown;
+    venue?: unknown;
+    url?: unknown;
+    openAccessPdf?: {
+        url?: unknown;
+    };
+    externalIds?: Record<string, unknown>;
+}
+export declare function requireSemanticScholarPaperRef(value: unknown): string;
+export declare function mapSemanticScholarPaper(paper: S2Paper, source: string): ScholarlyWorkRecord;
+export {};
+//# sourceMappingURL=papers.d.ts.map

package/dist/adapters/semantic-scholar/papers.d.ts.map

@@ -0,0 +1 @@
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package/dist/adapters/semantic-scholar/papers.js

@@ -0,0 +1,214 @@
+/**
+ * @owner       src::adapters::semantic-scholar::papers
+ * @does        Registers Semantic Scholar Graph API paper search, detail, citations, references, and PDF discovery commands.
+ * @needs       api.semanticscholar.org Graph v1, optional SEMANTIC_SCHOLAR_API_KEY, src/registry.ts
+ * @feeds       src/commands/scholar.ts via scholar.* capability tags
+ * @breaks      Graph API rate limits or response-shape drift surface as explicit adapter errors; no cached fallback is used.
+ * @invariants  Paper references are normalized to Semantic Scholar's accepted DOI:/ARXIV:/paperId formats; output maps to ScholarlyWorkRecord.
+ * @side-effects HTTPS egress to api.semanticscholar.org only
+ * @perf        O(limit) JSON mapping per command
+ * @concurrency safe
+ * @test        tests/unit/adapters/scholar-sources.test.ts
+ * @stability   experimental
+ * @since       2026-05-19
+ */
+import { cli, Strategy } from "../../registry.js";
+const API = "https://api.semanticscholar.org/graph/v1";
+const FIELDS = [
+    "paperId",
+    "title",
+    "abstract",
+    "year",
+    "authors",
+    "citationCount",
+    "referenceCount",
+    "venue",
+    "publicationVenue",
+    "url",
+    "openAccessPdf",
+    "externalIds",
+].join(",");
+function str(value) {
+    return typeof value === "string" ? value.trim() : "";
+}
+function num(value) {
+    return typeof value === "number" && Number.isFinite(value)
+        ? value
+        : undefined;
+}
+function bareDoi(value) {
+    return str(value)
+        .replace(/^doi:/i, "")
+        .replace(/^https?:\/\/(?:dx\.)?doi\.org\//i, "");
+}
+function bareArxiv(value) {
+    return str(value)
+        .replace(/^arxiv:/i, "")
+        .replace(/^https?:\/\/arxiv\.org\/(?:abs|pdf)\//i, "")
+        .replace(/\.pdf$/i, "")
+        .replace(/v\d+$/i, "");
+}
+export function requireSemanticScholarPaperRef(value) {
+    const raw = String(value ?? "").trim();
+    if (!raw)
+        throw new Error("semantic-scholar paper reference is required.");
+    const doi = bareDoi(raw);
+    if (/^10\.\S+\/\S+/.test(doi))
+        return `DOI:${doi}`;
+    if (/^(?:arxiv:|https?:\/\/arxiv\.org\/(?:abs|pdf)\/|\d{4}\.\d{4,5})/i.test(raw)) {
+        return `ARXIV:${bareArxiv(raw)}`;
+    }
+    if (/^[a-f0-9]{40}$/i.test(raw))
+        return raw;
+    throw new Error(`semantic-scholar paper reference "${raw}" is not recognised.`);
+}
+function headers() {
+    const out = {
+        Accept: "application/json",
+        "User-Agent": "unicli-semantic-scholar/1.0 (https://github.com/olo-dot-io/Uni-CLI)",
+    };
+    const key = process.env.SEMANTIC_SCHOLAR_API_KEY?.trim();
+    if (key)
+        out["x-api-key"] = key;
+    return out;
+}
+async function fetchS2(path, label) {
+    const response = await fetch(`${API}${path}`, { headers: headers() });
+    if (response.status === 404)
+        throw new Error(`${label} returned no result.`);
+    if (response.status === 429) {
+        throw new Error(`${label} returned HTTP 429; set SEMANTIC_SCHOLAR_API_KEY or retry later.`);
+    }
+    if (!response.ok)
+        throw new Error(`${label} returned HTTP ${response.status}.`);
+    const json = (await response.json());
+    if (json.error || json.message) {
+        throw new Error(`${label} returned API error: ${String(json.error ?? json.message)}.`);
+    }
+    return json;
+}
+export function mapSemanticScholarPaper(paper, source) {
+    const id = str(paper.paperId);
+    if (!id)
+        throw new Error("Semantic Scholar returned a paper without paperId.");
+    const doi = bareDoi(paper.externalIds?.DOI);
+    const arxiv = bareArxiv(paper.externalIds?.ArXiv);
+    return {
+        id,
+        title: str(paper.title),
+        abstract: str(paper.abstract) || undefined,
+        authors: Array.isArray(paper.authors)
+            ? paper.authors.map((author) => str(author.name)).filter(Boolean)
+            : undefined,
+        year: num(paper.year),
+        venue: str(paper.venue) || undefined,
+        doi: doi || undefined,
+        arxiv_id: arxiv || undefined,
+        semantic_scholar_id: id,
+        cited_by_count: num(paper.citationCount),
+        references_count: num(paper.referenceCount),
+        pdf_url: str(paper.openAccessPdf?.url) || undefined,
+        source_adapter: source,
+        source_url: str(paper.url) || `https://www.semanticscholar.org/paper/${id}`,
+        retrieved_at: new Date().toISOString(),
+    };
+}
+function rows(papers, source = "semantic-scholar") {
+    const list = Array.isArray(papers) ? papers : [];
+    return list.map((paper) => mapSemanticScholarPaper(paper, source));
+}
+cli({
+    site: "semantic-scholar",
+    name: "search",
+    description: "Search Semantic Scholar papers",
+    domain: "api.semanticscholar.org",
+    strategy: Strategy.PUBLIC,
+    args: [
+        { name: "query", type: "str", required: true, positional: true },
+        { name: "limit", type: "int", default: 20 },
+    ],
+    columns: [
+        "id",
+        "title",
+        "authors",
+        "year",
+        "venue",
+        "doi",
+        "pdf_url",
+        "source_url",
+    ],
+    capabilities: ["http.fetch", "scholar.search"],
+    func: async (_page, kwargs) => {
+        const query = String(kwargs.query ?? "").trim();
+        if (!query)
+            throw new Error("semantic-scholar search query cannot be empty.");
+        const limit = Math.min(Math.max(Number(kwargs.limit ?? 20), 1), 100);
+        const body = (await fetchS2(`/paper/search?query=${encodeURIComponent(query)}&limit=${limit}&fields=${encodeURIComponent(FIELDS)}`, "semantic-scholar search"));
+        const out = rows(body.data);
+        if (out.length === 0)
+            throw new Error(`No Semantic Scholar papers matched "${query}".`);
+        return out;
+    },
+});
+cli({
+    site: "semantic-scholar",
+    name: "paper",
+    description: "Fetch one Semantic Scholar paper by paperId, DOI, or arXiv id",
+    domain: "api.semanticscholar.org",
+    strategy: Strategy.PUBLIC,
+    args: [{ name: "id", type: "str", required: true, positional: true }],
+    columns: [
+        "id",
+        "title",
+        "authors",
+        "year",
+        "venue",
+        "doi",
+        "pdf_url",
+        "source_url",
+    ],
+    capabilities: ["http.fetch", "scholar.get", "scholar.pdf"],
+    func: async (_page, kwargs) => {
+        const ref = requireSemanticScholarPaperRef(kwargs.id ?? kwargs.ref ?? kwargs.doi ?? kwargs.arxiv_id);
+        const paper = (await fetchS2(`/paper/${encodeURIComponent(ref)}?fields=${encodeURIComponent(FIELDS)}`, `semantic-scholar paper ${ref}`));
+        return [mapSemanticScholarPaper(paper, "semantic-scholar")];
+    },
+});
+for (const [name, path, cap] of [
+    ["citations", "citations", "scholar.citations"],
+    ["references", "references", "scholar.references"],
+]) {
+    cli({
+        site: "semantic-scholar",
+        name,
+        description: `List Semantic Scholar paper ${name}`,
+        domain: "api.semanticscholar.org",
+        strategy: Strategy.PUBLIC,
+        args: [
+            { name: "id", type: "str", required: true, positional: true },
+            { name: "limit", type: "int", default: 20 },
+        ],
+        columns: [
+            "id",
+            "title",
+            "authors",
+            "year",
+            "venue",
+            "doi",
+            "pdf_url",
+            "source_url",
+        ],
+        capabilities: ["http.fetch", cap],
+        func: async (_page, kwargs) => {
+            const ref = requireSemanticScholarPaperRef(kwargs.id ?? kwargs.ref);
+            const limit = Math.min(Math.max(Number(kwargs.limit ?? 20), 1), 100);
+            const body = (await fetchS2(`/paper/${encodeURIComponent(ref)}/${path}?limit=${limit}&fields=${encodeURIComponent(FIELDS)}`, `semantic-scholar ${name} ${ref}`));
+            const papers = (body.data ?? []).map((item) => name === "citations" ? item.citingPaper : item.citedPaper);
+            const out = rows(papers);
+            if (out.length === 0)
+                throw new Error(`No Semantic Scholar ${name} found for ${ref}.`);
+            return out;
+        },
+    });
+}
+//# sourceMappingURL=papers.js.map

package/dist/adapters/semantic-scholar/papers.js.map

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package/dist/adapters/unpaywall/works.d.ts

@@ -0,0 +1,33 @@
+/**
+ * @owner       src::adapters::unpaywall::works
+ * @does        Registers Unpaywall DOI open-access lookup for PDF availability.
+ * @needs       api.unpaywall.org v2, UNPAYWALL_EMAIL or --email, src/registry.ts
+ * @feeds       src/commands/scholar.ts via scholar.pdf and scholar.get
+ * @breaks      Missing email is an explicit invalid-input error; Unpaywall drift surfaces as adapter error, never as a fabricated PDF.
+ * @invariants  Only DOI-shaped references are accepted; best_oa_location is preferred for PDF and landing URLs.
+ * @side-effects HTTPS egress to api.unpaywall.org only
+ * @perf        O(1) per DOI
+ * @concurrency safe
+ * @test        tests/unit/adapters/scholar-sources.test.ts
+ * @stability   experimental
+ * @since       2026-05-19
+ */
+import type { ScholarlyWorkRecord } from "../../types/scholarly.js";
+interface OaLocation {
+    url_for_pdf?: unknown;
+    url_for_landing_page?: unknown;
+    host_type?: unknown;
+    version?: unknown;
+    license?: unknown;
+}
+interface UnpaywallWork {
+    doi?: unknown;
+    title?: unknown;
+    is_oa?: unknown;
+    oa_status?: unknown;
+    best_oa_location?: OaLocation | null;
+}
+export declare function requireUnpaywallDoi(value: unknown): string;
+export declare function mapUnpaywallWork(work: UnpaywallWork, source: string): ScholarlyWorkRecord;
+export {};
+//# sourceMappingURL=works.d.ts.map

package/dist/adapters/unpaywall/works.d.ts.map

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