@zenalexa/unicli 0.221.0 → 0.221.1

package/dist/commands/scholar.d.ts

@@ -0,0 +1,33 @@
+/**
+ * @owner       src::commands::scholar
+ * @does        Top-level `unicli scholar` meta-command for academic source discovery: searches, retrieves, PDF availability, citation/reference traversal, and doctor output across adapters tagged with `scholar.*` capabilities.
+ * @needs       src/registry.ts, src/types/scholarly.ts, src/engine/kernel/execute.ts, src/output/formatter.ts
+ * @feeds       src/cli.ts, MCP/agent command discovery via list/search/do
+ * @breaks      Missing capability tags make scholarly sources invisible to the meta-command; weak reference routing can send DOI/arXiv/PMID lookups to the wrong first source.
+ * @invariants  --sources default is a conservative first-source set; --sources all is registry capability discovery; DOI is the primary dedupe key; no non-scholarly adapter is invoked as fallback.
+ * @side-effects Executes adapter commands through the engine kernel; writes stdout/stderr only.
+ * @perf        Fan-out is sequential today, O(S * R), where S is source count and R is rows per source.
+ * @concurrency safe — Commander handlers run one at a time per process
+ * @test        tests/unit/commands/scholar.test.ts
+ * @stability   experimental
+ * @since       2026-05-19
+ */
+import type { Command } from "commander";
+import type { AdapterCommand, AdapterManifest } from "../types.js";
+import type { ScholarlyReferenceRoute, ScholarlyWorkRecord } from "../types/scholarly.js";
+export declare const DEFAULT_SCHOLAR_SOURCES: readonly ["semantic-scholar", "openalex", "crossref", "arxiv", "dblp", "pubmed"];
+export declare const SCHOLAR_CAPABILITIES: readonly ["scholar.search", "scholar.get", "scholar.pdf", "scholar.citations", "scholar.references", "scholar.venue", "scholar.author", "scholar.datasets", "scholar.code", "scholar.review"];
+export type ScholarCapability = (typeof SCHOLAR_CAPABILITIES)[number];
+export declare function listScholarAdapters(): AdapterManifest[];
+export declare function resolveScholarSources(sourcesArg: string | undefined, fallback?: readonly string[]): string[];
+export declare function findScholarCommandByCapability(adapter: AdapterManifest, capability: ScholarCapability): {
+    name: string;
+    command: AdapterCommand;
+} | undefined;
+export declare function resolveScholarReference(ref: string): ScholarlyReferenceRoute;
+export declare function reciprocalRankFusion(rankedLists: ScholarlyWorkRecord[][], options?: {
+    k?: number;
+    topN?: number;
+}): ScholarlyWorkRecord[];
+export declare function registerScholarCommand(program: Command): void;
+//# sourceMappingURL=scholar.d.ts.map

package/dist/commands/scholar.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/scholar.js

@@ -0,0 +1,494 @@
+/**
+ * @owner       src::commands::scholar
+ * @does        Top-level `unicli scholar` meta-command for academic source discovery: searches, retrieves, PDF availability, citation/reference traversal, and doctor output across adapters tagged with `scholar.*` capabilities.
+ * @needs       src/registry.ts, src/types/scholarly.ts, src/engine/kernel/execute.ts, src/output/formatter.ts
+ * @feeds       src/cli.ts, MCP/agent command discovery via list/search/do
+ * @breaks      Missing capability tags make scholarly sources invisible to the meta-command; weak reference routing can send DOI/arXiv/PMID lookups to the wrong first source.
+ * @invariants  --sources default is a conservative first-source set; --sources all is registry capability discovery; DOI is the primary dedupe key; no non-scholarly adapter is invoked as fallback.
+ * @side-effects Executes adapter commands through the engine kernel; writes stdout/stderr only.
+ * @perf        Fan-out is sequential today, O(S * R), where S is source count and R is rows per source.
+ * @concurrency safe — Commander handlers run one at a time per process
+ * @test        tests/unit/commands/scholar.test.ts
+ * @stability   experimental
+ * @since       2026-05-19
+ */
+import { commandStrategy, getAllAdapters, resolveCommand, } from "../registry.js";
+import { buildInvocation, execute } from "../engine/kernel/execute.js";
+import { makeCtx } from "../output/envelope.js";
+import { detectFormat, format } from "../output/formatter.js";
+import { ExitCode, Strategy } from "../types.js";
+export const DEFAULT_SCHOLAR_SOURCES = [
+    "semantic-scholar",
+    "openalex",
+    "crossref",
+    "arxiv",
+    "dblp",
+    "pubmed",
+];
+export const SCHOLAR_CAPABILITIES = [
+    "scholar.search",
+    "scholar.get",
+    "scholar.pdf",
+    "scholar.citations",
+    "scholar.references",
+    "scholar.venue",
+    "scholar.author",
+    "scholar.datasets",
+    "scholar.code",
+    "scholar.review",
+];
+function hasAnyScholarCapability(adapter) {
+    return Object.values(adapter.commands).some((command) => (command.capabilities ?? []).some((cap) => cap.startsWith("scholar.")));
+}
+export function listScholarAdapters() {
+    return getAllAdapters()
+        .filter(hasAnyScholarCapability)
+        .sort((a, b) => a.name.localeCompare(b.name));
+}
+export function resolveScholarSources(sourcesArg, fallback = DEFAULT_SCHOLAR_SOURCES) {
+    if (!sourcesArg || sourcesArg.trim().length === 0)
+        return [...fallback];
+    if (sourcesArg.trim() === "all")
+        return listScholarAdapters().map((a) => a.name);
+    return sourcesArg
+        .split(",")
+        .map((source) => source.trim())
+        .filter(Boolean);
+}
+export function findScholarCommandByCapability(adapter, capability) {
+    for (const [name, command] of Object.entries(adapter.commands)) {
+        if ((command.capabilities ?? []).includes(capability))
+            return { name, command };
+    }
+    return undefined;
+}
+function bareDoi(value) {
+    return value
+        .trim()
+        .replace(/^doi:/i, "")
+        .replace(/^https?:\/\/(?:dx\.)?doi\.org\//i, "");
+}
+function bareArxiv(value) {
+    return value
+        .trim()
+        .replace(/^arxiv:/i, "")
+        .replace(/^https?:\/\/arxiv\.org\/(?:abs|pdf)\//i, "")
+        .replace(/\.pdf$/i, "")
+        .replace(/v\d+$/i, "");
+}
+export function resolveScholarReference(ref) {
+    const raw = ref.trim();
+    const doi = bareDoi(raw);
+    if (/^10\.\S+\/\S+/i.test(doi)) {
+        return {
+            kind: "doi",
+            value: doi,
+            preferredSources: ["openalex", "crossref", "semantic-scholar"],
+        };
+    }
+    if (/^(?:arxiv:|https?:\/\/arxiv\.org\/(?:abs|pdf)\/|\d{4}\.\d{4,5})/i.test(raw)) {
+        return {
+            kind: "arxiv",
+            value: bareArxiv(raw),
+            preferredSources: ["arxiv", "semantic-scholar", "openalex"],
+        };
+    }
+    const pmid = raw.match(/^pmid:\s*(\d+)$/i);
+    if (pmid) {
+        return {
+            kind: "pmid",
+            value: pmid[1],
+            preferredSources: ["pubmed", "semantic-scholar", "openalex"],
+        };
+    }
+    const openReview = raw.match(/^openreview:\s*([A-Za-z0-9_-]{6,20})$/i);
+    if (openReview) {
+        return {
+            kind: "openreview",
+            value: openReview[1],
+            preferredSources: ["openreview", "semantic-scholar", "openalex"],
+        };
+    }
+    const openAlex = raw.match(/^(?:https?:\/\/(?:api\.)?openalex\.org\/)?(?:works\/)?(W\d{4,})$/i);
+    if (openAlex) {
+        return {
+            kind: "openalex",
+            value: openAlex[1].toUpperCase(),
+            preferredSources: ["openalex", "semantic-scholar", "crossref"],
+        };
+    }
+    if (/^[a-f0-9]{40}$/i.test(raw)) {
+        return {
+            kind: "semantic-scholar",
+            value: raw,
+            preferredSources: ["semantic-scholar", "openalex", "crossref"],
+        };
+    }
+    if (/^[a-z]+(?:\/[A-Za-z0-9_.-]+)+$/.test(raw)) {
+        return {
+            kind: "dblp",
+            value: raw,
+            preferredSources: ["dblp", "semantic-scholar", "openalex"],
+        };
+    }
+    return {
+        kind: "unknown",
+        value: raw,
+        preferredSources: [...DEFAULT_SCHOLAR_SOURCES],
+    };
+}
+function dedupeKey(record) {
+    if (record.doi)
+        return `doi:${record.doi.toLowerCase()}`;
+    if (record.arxiv_id)
+        return `arxiv:${record.arxiv_id.toLowerCase()}`;
+    if (record.pmid)
+        return `pmid:${record.pmid}`;
+    return `${record.source_adapter}:${record.id}`;
+}
+export function reciprocalRankFusion(rankedLists, options = {}) {
+    const k = options.k ?? 60;
+    const buckets = new Map();
+    let order = 0;
+    for (const list of rankedLists) {
+        for (let rank = 0; rank < list.length; rank += 1) {
+            const record = list[rank];
+            const key = dedupeKey(record);
+            const increment = 1 / (k + rank + 1);
+            const existing = buckets.get(key);
+            if (existing) {
+                existing.score += increment;
+            }
+            else {
+                buckets.set(key, { score: increment, record, firstSeen: order });
+                order += 1;
+            }
+        }
+    }
+    const fused = [...buckets.values()].sort((a, b) => b.score - a.score || a.firstSeen - b.firstSeen);
+    return (options.topN ? fused.slice(0, options.topN) : fused).map((bucket) => bucket.record);
+}
+function numberOpt(raw, fallback, max) {
+    if (raw === undefined || raw === "")
+        return fallback;
+    const n = Number(raw);
+    if (!Number.isInteger(n) || n < 1 || n > max) {
+        throw new Error(`limit must be an integer in [1, ${max}].`);
+    }
+    return n;
+}
+function coerceStringArray(value) {
+    if (!Array.isArray(value))
+        return undefined;
+    const out = value.map((item) => String(item ?? "").trim()).filter(Boolean);
+    return out.length > 0 ? out : undefined;
+}
+function coerceNumber(value) {
+    if (typeof value === "number" && Number.isFinite(value))
+        return value;
+    if (typeof value === "string" && value.length > 0) {
+        const n = Number(value);
+        return Number.isFinite(n) ? n : undefined;
+    }
+    return undefined;
+}
+function coerceToScholarlyRecords(rows, source) {
+    if (!Array.isArray(rows))
+        return [];
+    const out = [];
+    for (const row of rows) {
+        if (!row || typeof row !== "object")
+            continue;
+        const record = row;
+        if (typeof record.id !== "string" || typeof record.title !== "string") {
+            continue;
+        }
+        const work = {
+            id: record.id,
+            title: record.title,
+            source_adapter: typeof record.source_adapter === "string"
+                ? record.source_adapter
+                : source,
+            retrieved_at: typeof record.retrieved_at === "string" &&
+                record.retrieved_at.length > 0
+                ? record.retrieved_at
+                : new Date().toISOString(),
+        };
+        const authors = coerceStringArray(record.authors);
+        if (authors)
+            work.authors = authors;
+        const year = coerceNumber(record.year);
+        if (year !== undefined)
+            work.year = year;
+        for (const field of [
+            "date",
+            "venue",
+            "type",
+            "abstract",
+            "doi",
+            "arxiv_id",
+            "pmid",
+            "openalex_id",
+            "semantic_scholar_id",
+            "dblp_key",
+            "openreview_id",
+            "oa_status",
+            "pdf_url",
+            "landing_url",
+            "code_url",
+            "dataset_url",
+            "source_url",
+        ]) {
+            if (typeof record[field] === "string" && record[field].length > 0) {
+                work[field] = record[field];
+            }
+        }
+        for (const [sourceField, targetField] of [
+            ["cited_by_count", "cited_by_count"],
+            ["references_count", "references_count"],
+        ]) {
+            const n = coerceNumber(record[sourceField]);
+            if (n !== undefined)
+                work[targetField] = n;
+        }
+        if (typeof record.is_open_access === "boolean") {
+            work.is_open_access = record.is_open_access;
+        }
+        if (record.raw !== undefined)
+            work.raw = record.raw;
+        out.push(work);
+    }
+    return out;
+}
+async function runAdapterCommand(source, capability, args) {
+    const adapter = getAllAdapters().find((candidate) => candidate.name === source);
+    if (!adapter) {
+        return {
+            source,
+            records: [],
+            error: {
+                code: "adapter_not_found",
+                message: `unknown source: ${source}`,
+            },
+        };
+    }
+    const found = findScholarCommandByCapability(adapter, capability);
+    if (!found) {
+        return {
+            source,
+            records: [],
+            error: {
+                code: "capability_unsupported",
+                message: `${source} does not expose ${capability}`,
+            },
+        };
+    }
+    const invocation = buildInvocation("cli", source, found.name, { args, source: "internal" }, { approved: true });
+    if (!invocation) {
+        return {
+            source,
+            records: [],
+            error: {
+                code: "build_invocation_failed",
+                message: `could not build invocation for ${source}.${found.name}`,
+            },
+        };
+    }
+    const result = await execute(invocation);
+    if (result.error) {
+        return {
+            source,
+            records: [],
+            error: {
+                code: result.error.code ?? "execution_error",
+                message: result.error.message ?? "adapter command failed",
+            },
+        };
+    }
+    return {
+        source,
+        records: coerceToScholarlyRecords(result.results, source),
+    };
+}
+function columns(detailed = false) {
+    return detailed
+        ? [
+            "id",
+            "title",
+            "authors",
+            "year",
+            "venue",
+            "type",
+            "doi",
+            "arxiv_id",
+            "pmid",
+            "cited_by_count",
+            "references_count",
+            "is_open_access",
+            "oa_status",
+            "pdf_url",
+            "source_adapter",
+            "source_url",
+        ]
+        : ["id", "title", "year", "venue", "doi", "pdf_url", "source_adapter"];
+}
+async function runSearch(program, query, opts) {
+    const startedAt = Date.now();
+    const fmt = detectFormat(program.opts().format);
+    const ctx = makeCtx("scholar.search", startedAt);
+    const limit = numberOpt(opts.limit, 20, 100);
+    const sources = resolveScholarSources(opts.sources);
+    const outcomes = [];
+    for (const source of sources) {
+        outcomes.push(await runAdapterCommand(source, "scholar.search", { query, limit }));
+    }
+    const fused = reciprocalRankFusion(outcomes.map((outcome) => outcome.records), { topN: limit });
+    ctx.duration_ms = Date.now() - startedAt;
+    ctx.surface = "web";
+    if (fused.length === 0) {
+        const errors = outcomes.filter((outcome) => outcome.error);
+        ctx.error = {
+            code: "SCHOLAR_NOT_FOUND",
+            message: `no scholarly works returned for "${query}" across [${sources.join(", ")}]`,
+            suggestion: errors.length > 0
+                ? `Per-source errors: ${errors.map((outcome) => `${outcome.source}: ${outcome.error?.code}`).join("; ")}`
+                : "Try --sources all or a more specific query.",
+            retryable: errors.some((outcome) => outcome.error?.code === "rate_limit"),
+        };
+        console.error(format(null, undefined, fmt, ctx));
+        process.exit(ExitCode.EMPTY_RESULT);
+    }
+    console.log(format(fused, columns(opts.detailed), fmt, ctx));
+}
+async function runSingle(program, capability, ref, opts) {
+    const startedAt = Date.now();
+    const fmt = detectFormat(program.opts().format);
+    const ctx = makeCtx(capability, startedAt);
+    const route = resolveScholarReference(ref);
+    const sourceList = opts.source
+        ? [opts.source]
+        : resolveScholarSources(opts.sources, route.preferredSources);
+    const outcomes = [];
+    for (const source of sourceList) {
+        outcomes.push(await runAdapterCommand(source, capability, {
+            ref: route.value,
+            id: route.value,
+            doi: route.kind === "doi" ? route.value : undefined,
+            arxiv_id: route.kind === "arxiv" ? route.value : undefined,
+            pmid: route.kind === "pmid" ? route.value : undefined,
+        }));
+    }
+    const fused = reciprocalRankFusion(outcomes.map((outcome) => outcome.records), { topN: capability === "scholar.pdf" ? 10 : 50 });
+    ctx.duration_ms = Date.now() - startedAt;
+    ctx.surface = "web";
+    if (fused.length === 0) {
+        const errors = outcomes.filter((outcome) => outcome.error);
+        ctx.error = {
+            code: "SCHOLAR_NOT_FOUND",
+            message: `no scholarly records returned for "${ref}" across [${sourceList.join(", ")}]`,
+            suggestion: errors.length > 0
+                ? `Per-source errors: ${errors.map((outcome) => `${outcome.source}: ${outcome.error?.code}`).join("; ")}`
+                : "Run `unicli scholar doctor` to inspect available scholarly sources.",
+            retryable: errors.some((outcome) => outcome.error?.code === "rate_limit"),
+        };
+        console.error(format(null, undefined, fmt, ctx));
+        process.exit(ExitCode.EMPTY_RESULT);
+    }
+    console.log(format(fused, columns(opts.detailed), fmt, ctx));
+}
+async function runDoctor(program, opts) {
+    const startedAt = Date.now();
+    const fmt = detectFormat(program.opts().format);
+    const ctx = makeCtx("scholar.doctor", startedAt);
+    const selected = resolveScholarSources(opts.sources, listScholarAdapters().map((adapter) => adapter.name));
+    const rows = listScholarAdapters()
+        .filter((adapter) => selected.includes(adapter.name))
+        .map((adapter) => {
+        const caps = new Set();
+        for (const command of Object.values(adapter.commands)) {
+            for (const cap of command.capabilities ?? []) {
+                if (cap.startsWith("scholar."))
+                    caps.add(cap);
+            }
+        }
+        const health = resolveCommand(adapter.name, "health");
+        const strategy = health
+            ? commandStrategy(adapter, health.command)
+            : undefined;
+        return {
+            source: adapter.name,
+            capabilities: [...caps].sort(),
+            health: !health
+                ? "skipped"
+                : strategy !== undefined && strategy !== Strategy.PUBLIC
+                    ? "blocked"
+                    : "available",
+            detail: !health
+                ? "no `health` command — adapter passes by capability introspection"
+                : strategy !== undefined && strategy !== Strategy.PUBLIC
+                    ? `health probe requires ${strategy} auth — skipped`
+                    : "health probe command is public",
+        };
+    });
+    ctx.duration_ms = Date.now() - startedAt;
+    ctx.surface = "web";
+    console.log(format(rows, ["source", "capabilities", "health", "detail"], fmt, ctx));
+}
+export function registerScholarCommand(program) {
+    const scholar = program
+        .command("scholar")
+        .description("Scholarly meta-command — search, retrieve, PDF, citations, references, and source audit across first-source academic adapters");
+    scholar
+        .command("search <query>")
+        .description("Fan-out scholarly paper search across first-source adapters")
+        .option("--sources <csv>", "comma-separated source list, or `all`")
+        .option("--limit <n>", "maximum fused result count", "20")
+        .option("-D, --detailed", "include richer metadata columns")
+        .action(async (query, opts) => {
+        await runSearch(program, query, opts);
+    });
+    scholar
+        .command("get <ref>")
+        .description("Retrieve one paper/work by DOI, arXiv id, PMID, OpenAlex id, Semantic Scholar id, dblp key, or OpenReview forum")
+        .option("--source <site>", "force one source")
+        .option("--sources <csv>", "override auto-routed source list")
+        .option("-D, --detailed", "include richer metadata columns")
+        .action(async (ref, opts) => {
+        await runSingle(program, "scholar.get", ref, opts);
+    });
+    scholar
+        .command("pdf <ref>")
+        .description("Find open-access PDF candidates for a DOI, arXiv id, PMID, or source id")
+        .option("--source <site>", "force one source")
+        .option("--sources <csv>", "override auto-routed source list")
+        .option("-D, --detailed", "include richer metadata columns")
+        .action(async (ref, opts) => {
+        await runSingle(program, "scholar.pdf", ref, opts);
+    });
+    scholar
+        .command("citations <ref>")
+        .description("List works citing this paper when the source supports it")
+        .option("--source <site>", "force one source")
+        .option("--sources <csv>", "override auto-routed source list")
+        .option("-D, --detailed", "include richer metadata columns")
+        .action(async (ref, opts) => {
+        await runSingle(program, "scholar.citations", ref, opts);
+    });
+    scholar
+        .command("references <ref>")
+        .description("List works referenced by this paper when the source supports it")
+        .option("--source <site>", "force one source")
+        .option("--sources <csv>", "override auto-routed source list")
+        .option("-D, --detailed", "include richer metadata columns")
+        .action(async (ref, opts) => {
+        await runSingle(program, "scholar.references", ref, opts);
+    });
+    scholar
+        .command("doctor")
+        .description("Inspect registered scholarly adapters and capability tags")
+        .option("--sources <csv>", "limit to a comma-separated source list")
+        .action(async (opts) => {
+        await runDoctor(program, opts);
+    });
+}
+//# sourceMappingURL=scholar.js.map

package/dist/commands/scholar.js.map

@@ -0,0 +1 @@
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package/dist/commands/search.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"search.d.ts","sourceRoot":"","sources":["../../src/commands/search.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAOpC,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CA6D5D"}
+{"version":3,"file":"search.d.ts","sourceRoot":"","sources":["../../src/commands/search.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAOpC,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CA2D5D"}

package/dist/commands/search.js

@@ -25,12 +25,9 @@ export function registerSearchCommand(program) {
             process.exitCode = 2;
             return;
         }
-        const effectiveQuery = opts.category
-            ? `${opts.category} ${query}`.trim()
-            : query;
-        const results = search(effectiveQuery, limit);
+        const results = search(query, limit, { category: opts.category });
         if (results.length === 0) {
-            console.error(chalk.yellow(`No commands found for: ${effectiveQuery}`));
+            console.error(chalk.yellow(`No commands found for: ${[opts.category, query].filter(Boolean).join(" ")}`));
             process.exitCode = 66; // EX_EMPTY
             return;
         }

package/dist/commands/search.js.map

@@ -1 +1 @@
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package/dist/discovery/aliases.d.ts

@@ -1,8 +1,8 @@
 /**
  * @owner   src/discovery/aliases.ts
- * @does    Define bilingual aliases, action synonyms, domain synonyms, and site categories.
+ * @does    Define bilingual aliases, action synonyms, domain synonyms, site categories, and scholarly discovery vocabulary.
  * @needs   Supported site ids, discovery search scoring rules
- * @feeds   src/discovery/search.ts, generated manifest categories
+ * @feeds   src/discovery/search.ts, src/registry.ts, generated manifest categories
  * @breaks  Missing aliases or categories degrade command discovery relevance.
  */
 export declare const SITE_ALIASES: ReadonlyMap<string, string>;

package/dist/discovery/aliases.d.ts.map

@@ -1 +1 @@
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