@zenalexa/unicli 0.218.1 → 0.220.0

package/dist/adapters/openalex/works.d.ts

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+/**
+ * @owner   src/adapters/openalex/works.ts
+ * @does    Register agent-facing OpenAlex work search and detail commands.
+ * @needs   Public OpenAlex API, TypeScript adapter loader, work id/DOI normalization.
+ * @feeds   surface coverage ledger, scholarly work command surface, agent-readable OpenAlex rows.
+ * @breaks  OpenAlex API envelope drift, weak DOI/id parsing, or abstract reconstruction errors degrade research lookup.
+ */
+interface OpenAlexWork {
+    id?: unknown;
+    doi?: unknown;
+    title?: unknown;
+    publication_year?: unknown;
+    publication_date?: unknown;
+    cited_by_count?: unknown;
+    authorships?: Array<{
+        author?: {
+            display_name?: unknown;
+        };
+    }>;
+    primary_location?: {
+        source?: {
+            display_name?: unknown;
+        };
+    };
+    open_access?: {
+        is_oa?: unknown;
+        oa_url?: unknown;
+    };
+    type?: unknown;
+    referenced_works?: unknown[];
+    language?: unknown;
+    abstract_inverted_index?: Record<string, number[]>;
+}
+export declare function requireOpenAlexString(value: unknown, label: string): string;
+export declare function requireOpenAlexLimit(value: unknown, fallback?: number): number;
+export declare function bareOpenAlexId(value: unknown): string;
+export declare function bareDoi(value: unknown): string;
+export declare function requireOpenAlexWorkRef(value: unknown): string;
+export declare function reconstructOpenAlexAbstract(index: unknown): string;
+export declare function mapOpenAlexSearchRows(works: OpenAlexWork[], limit: number): Array<Record<string, unknown>>;
+export declare function mapOpenAlexWorkRow(work: OpenAlexWork): Record<string, unknown>;
+export {};
+//# sourceMappingURL=works.d.ts.map

package/dist/adapters/openalex/works.d.ts.map

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package/dist/adapters/openalex/works.js

@@ -0,0 +1,267 @@
+/**
+ * @owner   src/adapters/openalex/works.ts
+ * @does    Register agent-facing OpenAlex work search and detail commands.
+ * @needs   Public OpenAlex API, TypeScript adapter loader, work id/DOI normalization.
+ * @feeds   surface coverage ledger, scholarly work command surface, agent-readable OpenAlex rows.
+ * @breaks  OpenAlex API envelope drift, weak DOI/id parsing, or abstract reconstruction errors degrade research lookup.
+ */
+import { cli, Strategy } from "../../registry.js";
+const OPENALEX_BASE = "https://api.openalex.org";
+const WORK_ID_RE = /^W\d{4,}$/;
+const DOI_RE = /^10\.\S+$/;
+const SEARCH_SELECT = [
+    "id",
+    "doi",
+    "title",
+    "publication_year",
+    "cited_by_count",
+    "authorships",
+    "primary_location",
+    "open_access",
+    "type",
+].join(",");
+const WORK_SELECT = [
+    "id",
+    "doi",
+    "title",
+    "publication_year",
+    "publication_date",
+    "cited_by_count",
+    "authorships",
+    "primary_location",
+    "open_access",
+    "type",
+    "referenced_works",
+    "language",
+    "abstract_inverted_index",
+].join(",");
+function stringField(value) {
+    return typeof value === "string" ? value : "";
+}
+function numberField(value) {
+    return typeof value === "number" && Number.isFinite(value) ? value : null;
+}
+export function requireOpenAlexString(value, label) {
+    const text = String(value ?? "").trim();
+    if (!text)
+        throw new Error(`openalex ${label} cannot be empty.`);
+    return text;
+}
+export function requireOpenAlexLimit(value, fallback = 20) {
+    if (value === undefined || value === null || value === "")
+        return fallback;
+    const n = Number(value);
+    if (!Number.isInteger(n) || n < 1 || n > 200) {
+        throw new Error(`openalex limit must be an integer in [1, 200]. Got: ${String(value)}`);
+    }
+    return n;
+}
+export function bareOpenAlexId(value) {
+    return stringField(value)
+        .trim()
+        .replace(/^https?:\/\/(?:api\.)?openalex\.org\//i, "")
+        .replace(/^works\//i, "");
+}
+export function bareDoi(value) {
+    return stringField(value)
+        .trim()
+        .replace(/^https?:\/\/(?:dx\.)?doi\.org\//i, "");
+}
+export function requireOpenAlexWorkRef(value) {
+    const raw = String(value ?? "").trim();
+    if (!raw)
+        throw new Error("openalex work id is required.");
+    const openAlexUrl = raw.match(/^https?:\/\/(?:api\.)?openalex\.org\/(?:works\/)?([A-Za-z]\d+)/i);
+    if (openAlexUrl) {
+        const id = openAlexUrl[1].toUpperCase();
+        if (!id.startsWith("W"))
+            throw new Error(`openalex id must be a Work id, got ${id}.`);
+        return id;
+    }
+    const upper = raw.toUpperCase();
+    if (WORK_ID_RE.test(upper))
+        return upper;
+    if (/^doi:/i.test(raw)) {
+        const doi = raw.replace(/^doi:/i, "").trim();
+        if (DOI_RE.test(doi))
+            return `doi:${doi}`;
+    }
+    const doiUrl = raw.match(/^https?:\/\/(?:dx\.)?doi\.org\/(.+)$/i);
+    if (doiUrl && DOI_RE.test(doiUrl[1]))
+        return `doi:${doiUrl[1]}`;
+    if (DOI_RE.test(raw))
+        return `doi:${raw}`;
+    throw new Error(`openalex work id "${raw}" is not recognised.`);
+}
+export function reconstructOpenAlexAbstract(index) {
+    if (!index || typeof index !== "object")
+        return "";
+    const positions = [];
+    for (const [token, values] of Object.entries(index)) {
+        if (!Array.isArray(values))
+            continue;
+        for (const pos of values) {
+            if (Number.isInteger(pos) && pos >= 0 && pos < 100_000) {
+                positions[pos] = token;
+            }
+        }
+    }
+    return positions.filter(Boolean).join(" ").replace(/\s+/g, " ").trim();
+}
+function appendMailto(url) {
+    const mailto = process.env.OPENALEX_MAILTO?.trim();
+    if (!mailto)
+        return url;
+    return `${url}${url.includes("?") ? "&" : "?"}mailto=${encodeURIComponent(mailto)}`;
+}
+function firstAuthor(work) {
+    return Array.isArray(work.authorships) && work.authorships.length > 0
+        ? stringField(work.authorships[0]?.author?.display_name).trim()
+        : "";
+}
+function authors(work) {
+    return Array.isArray(work.authorships)
+        ? work.authorships
+            .map((item) => stringField(item.author?.display_name).trim())
+            .filter(Boolean)
+            .join(", ")
+        : "";
+}
+function venue(work) {
+    return stringField(work.primary_location?.source?.display_name).trim();
+}
+export function mapOpenAlexSearchRows(works, limit) {
+    return works.slice(0, limit).map((work, index) => {
+        const id = bareOpenAlexId(work.id);
+        return {
+            rank: index + 1,
+            id,
+            title: stringField(work.title).trim(),
+            year: numberField(work.publication_year),
+            citations: numberField(work.cited_by_count),
+            firstAuthor: firstAuthor(work),
+            venue: venue(work),
+            openAccess: Boolean(work.open_access?.is_oa),
+            type: stringField(work.type).trim(),
+            doi: bareDoi(work.doi),
+            url: id ? `https://openalex.org/${id}` : "",
+        };
+    });
+}
+export function mapOpenAlexWorkRow(work) {
+    const id = bareOpenAlexId(work.id);
+    if (!id)
+        throw new Error("OpenAlex returned no work record.");
+    return {
+        id,
+        title: stringField(work.title).trim(),
+        type: stringField(work.type).trim(),
+        year: numberField(work.publication_year),
+        date: stringField(work.publication_date).trim(),
+        language: stringField(work.language).trim(),
+        authors: authors(work),
+        venue: venue(work),
+        citations: numberField(work.cited_by_count),
+        openAccess: Boolean(work.open_access?.is_oa),
+        openAccessUrl: stringField(work.open_access?.oa_url).trim(),
+        referencedCount: Array.isArray(work.referenced_works)
+            ? work.referenced_works.length
+            : null,
+        doi: bareDoi(work.doi),
+        abstract: reconstructOpenAlexAbstract(work.abstract_inverted_index),
+        url: `https://openalex.org/${id}`,
+    };
+}
+async function fetchOpenAlex(url, label) {
+    const response = await fetch(appendMailto(url), {
+        headers: {
+            "User-Agent": "unicli (https://github.com/olo-dot-io/Uni-CLI)",
+            Accept: "application/json",
+        },
+    });
+    if (response.status === 404)
+        throw new Error(`${label} returned no result.`);
+    if (response.status === 429)
+        throw new Error(`${label} returned HTTP 429.`);
+    if (!response.ok)
+        throw new Error(`${label} returned HTTP ${response.status}.`);
+    return response.json();
+}
+cli({
+    site: "openalex",
+    name: "search",
+    description: "Search OpenAlex Works by keyword",
+    domain: "api.openalex.org",
+    strategy: Strategy.PUBLIC,
+    args: [
+        {
+            name: "query",
+            type: "str",
+            required: true,
+            positional: true,
+            description: "Search text",
+        },
+        { name: "limit", type: "int", default: 20, description: "Max works" },
+    ],
+    columns: [
+        "rank",
+        "id",
+        "title",
+        "year",
+        "citations",
+        "firstAuthor",
+        "venue",
+        "openAccess",
+        "type",
+        "doi",
+        "url",
+    ],
+    func: async (_page, kwargs) => {
+        const query = requireOpenAlexString(kwargs.query, "query");
+        const limit = requireOpenAlexLimit(kwargs.limit);
+        const body = (await fetchOpenAlex(`${OPENALEX_BASE}/works?search=${encodeURIComponent(query)}&per-page=${limit}&select=${SEARCH_SELECT}`, "openalex search"));
+        const rows = mapOpenAlexSearchRows(Array.isArray(body.results) ? body.results : [], limit);
+        if (rows.length === 0)
+            throw new Error(`No OpenAlex works matched "${query}".`);
+        return rows;
+    },
+});
+cli({
+    site: "openalex",
+    name: "work",
+    description: "Fetch a single OpenAlex Work",
+    domain: "api.openalex.org",
+    strategy: Strategy.PUBLIC,
+    args: [
+        {
+            name: "id",
+            type: "str",
+            required: true,
+            positional: true,
+            description: "OpenAlex Work id or DOI",
+        },
+    ],
+    columns: [
+        "id",
+        "title",
+        "type",
+        "year",
+        "date",
+        "language",
+        "authors",
+        "venue",
+        "citations",
+        "openAccess",
+        "openAccessUrl",
+        "referencedCount",
+        "doi",
+        "abstract",
+        "url",
+    ],
+    func: async (_page, kwargs) => {
+        const ref = requireOpenAlexWorkRef(kwargs.id);
+        const work = (await fetchOpenAlex(`${OPENALEX_BASE}/works/${encodeURIComponent(ref)}?select=${WORK_SELECT}`, "openalex work"));
+        return [mapOpenAlexWorkRow(work)];
+    },
+});
+//# sourceMappingURL=works.js.map

package/dist/adapters/openalex/works.js.map

@@ -0,0 +1 @@
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package/dist/adapters/openfda/records.d.ts

@@ -0,0 +1,18 @@
+/**
+ * @owner   src/adapters/openfda/records.ts
+ * @does    Register agent-facing openFDA drug label and food recall commands.
+ * @needs   openFDA public API, bounded limits, explicit query encoding.
+ * @feeds   surface coverage ledger, FDA drug label rows, FDA food recall rows.
+ * @breaks  openFDA API drift, malformed Lucene filters, or silent empty rows hide FDA records.
+ */
+export declare function requireOpenfdaLimit(value: unknown, fallback: number, max: number): number;
+export declare function firstOpenfdaValue(value: unknown): unknown;
+export declare function joinOpenfdaValues(value: unknown, max?: number): string | null;
+export declare function buildFoodRecallSearch(filters: {
+    classification?: unknown;
+    query?: unknown;
+    status?: unknown;
+}): string;
+export declare function mapDrugLabelRows(rows: Array<Record<string, unknown>>): Array<Record<string, unknown>>;
+export declare function mapFoodRecallRows(rows: Array<Record<string, unknown>>): Array<Record<string, unknown>>;
+//# sourceMappingURL=records.d.ts.map

package/dist/adapters/openfda/records.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"records.d.ts","sourceRoot":"","sources":["../../../src/adapters/openfda/records.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAYH,wBAAgB,mBAAmB,CACjC,KAAK,EAAE,OAAO,EACd,QAAQ,EAAE,MAAM,EAChB,GAAG,EAAE,MAAM,GACV,MAAM,CAQR;AAED,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,OAAO,GAAG,OAAO,CAIzD;AAED,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,OAAO,EAAE,GAAG,SAAI,GAAG,MAAM,GAAG,IAAI,CAGxE;AAYD,wBAAgB,qBAAqB,CAAC,OAAO,EAAE;IAC7C,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB,GAAG,MAAM,CAQT;AAED,wBAAgB,gBAAgB,CAC9B,IAAI,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,GACnC,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAyBhC;AAED,wBAAgB,iBAAiB,CAC/B,IAAI,EAAE,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,GACnC,KAAK,CAAC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAmBhC"}

package/dist/adapters/openfda/records.js

@@ -0,0 +1,209 @@
+/**
+ * @owner   src/adapters/openfda/records.ts
+ * @does    Register agent-facing openFDA drug label and food recall commands.
+ * @needs   openFDA public API, bounded limits, explicit query encoding.
+ * @feeds   surface coverage ledger, FDA drug label rows, FDA food recall rows.
+ * @breaks  openFDA API drift, malformed Lucene filters, or silent empty rows hide FDA records.
+ */
+import { cli, Strategy } from "../../registry.js";
+const API_BASE = "https://api.fda.gov";
+function requireNonEmpty(value, label) {
+    const text = String(value ?? "").trim();
+    if (!text)
+        throw new Error(`openfda ${label} cannot be empty.`);
+    return text;
+}
+export function requireOpenfdaLimit(value, fallback, max) {
+    const raw = value === undefined || value === null || value === "" ? fallback : value;
+    const limit = Number(raw);
+    if (!Number.isInteger(limit) || limit < 1 || limit > max) {
+        throw new Error(`openfda limit must be an integer in [1, ${max}].`);
+    }
+    return limit;
+}
+export function firstOpenfdaValue(value) {
+    if (!Array.isArray(value) || value.length === 0)
+        return null;
+    const first = value[0];
+    return typeof first === "string" ? first.trim() || null : (first ?? null);
+}
+export function joinOpenfdaValues(value, max = 5) {
+    if (!Array.isArray(value) || value.length === 0)
+        return null;
+    return value.slice(0, max).map(String).join(", ");
+}
+function objectField(value) {
+    return value && typeof value === "object"
+        ? value
+        : {};
+}
+function stringOrNull(value) {
+    return typeof value === "string" && value.trim() ? value.trim() : null;
+}
+export function buildFoodRecallSearch(filters) {
+    const parts = [];
+    if (filters.query)
+        parts.push(String(filters.query).trim());
+    if (filters.status)
+        parts.push(`status:"${String(filters.status).trim()}"`);
+    if (filters.classification) {
+        parts.push(`classification:"${String(filters.classification).trim()}"`);
+    }
+    return parts.map((part) => encodeURIComponent(part)).join("+AND+");
+}
+export function mapDrugLabelRows(rows) {
+    return rows.map((row, index) => {
+        const openfda = objectField(row.openfda);
+        const pharmClass = firstOpenfdaValue(openfda.pharm_class_epc) ??
+            firstOpenfdaValue(openfda.pharm_class_moa) ??
+            firstOpenfdaValue(openfda.pharm_class_cs) ??
+            firstOpenfdaValue(openfda.pharm_class_pe);
+        return {
+            rank: index + 1,
+            id: stringOrNull(row.id),
+            brandName: firstOpenfdaValue(openfda.brand_name),
+            genericName: firstOpenfdaValue(openfda.generic_name),
+            manufacturer: firstOpenfdaValue(openfda.manufacturer_name),
+            productType: firstOpenfdaValue(openfda.product_type),
+            route: joinOpenfdaValues(openfda.route),
+            productNdc: firstOpenfdaValue(openfda.product_ndc),
+            pharmClass,
+            purpose: firstOpenfdaValue(row.purpose),
+            indications: firstOpenfdaValue(row.indications_and_usage),
+            warnings: firstOpenfdaValue(row.warnings),
+            dosage: firstOpenfdaValue(row.dosage_and_administration),
+            effectiveTime: stringOrNull(row.effective_time),
+        };
+    });
+}
+export function mapFoodRecallRows(rows) {
+    return rows.map((row, index) => ({
+        rank: index + 1,
+        recallNumber: stringOrNull(row.recall_number),
+        status: stringOrNull(row.status),
+        classification: stringOrNull(row.classification),
+        voluntary: stringOrNull(row.voluntary_mandated),
+        recallingFirm: stringOrNull(row.recalling_firm),
+        city: stringOrNull(row.city),
+        state: stringOrNull(row.state),
+        country: stringOrNull(row.country),
+        productDescription: stringOrNull(row.product_description),
+        reasonForRecall: stringOrNull(row.reason_for_recall),
+        productQuantity: stringOrNull(row.product_quantity),
+        distributionPattern: stringOrNull(row.distribution_pattern),
+        reportDate: stringOrNull(row.report_date),
+        recallInitiationDate: stringOrNull(row.recall_initiation_date),
+        terminationDate: stringOrNull(row.termination_date),
+    }));
+}
+async function fetchJson(url, label) {
+    const response = await fetch(url, {
+        headers: {
+            accept: "application/json",
+            "user-agent": "unicli-openfda (https://github.com/olo-dot-io/Uni-CLI)",
+        },
+    });
+    if (response.status === 404)
+        throw new Error(`${label} returned no result.`);
+    if (response.status === 429)
+        throw new Error(`${label} returned HTTP 429.`);
+    if (!response.ok)
+        throw new Error(`${label} returned HTTP ${response.status}.`);
+    return response.json();
+}
+cli({
+    site: "openfda",
+    name: "drug-label",
+    description: "Search FDA drug labels by brand or generic name",
+    domain: "fda.gov",
+    strategy: Strategy.PUBLIC,
+    args: [
+        {
+            name: "query",
+            type: "str",
+            required: true,
+            positional: true,
+            description: "Brand or generic drug name",
+        },
+        { name: "limit", type: "int", default: 5, description: "Max rows" },
+    ],
+    columns: [
+        "rank",
+        "id",
+        "brandName",
+        "genericName",
+        "manufacturer",
+        "productType",
+        "route",
+        "productNdc",
+        "pharmClass",
+        "purpose",
+        "indications",
+        "warnings",
+        "dosage",
+        "effectiveTime",
+    ],
+    func: async (_page, kwargs) => {
+        const query = requireNonEmpty(kwargs.query, "query");
+        const limit = requireOpenfdaLimit(kwargs.limit, 5, 25);
+        const brand = encodeURIComponent(`openfda.brand_name:"${query}"`);
+        const generic = encodeURIComponent(`openfda.generic_name:"${query}"`);
+        const body = (await fetchJson(`${API_BASE}/drug/label.json?search=${brand}+OR+${generic}&limit=${limit}`, "openfda drug-label"));
+        const rows = mapDrugLabelRows(Array.isArray(body.results)
+            ? body.results
+            : []);
+        if (rows.length === 0) {
+            throw new Error(`openfda drug-label returned no rows for "${query}".`);
+        }
+        return rows;
+    },
+});
+cli({
+    site: "openfda",
+    name: "food-recall",
+    description: "Search FDA food recall and enforcement actions",
+    domain: "fda.gov",
+    strategy: Strategy.PUBLIC,
+    args: [
+        { name: "query", type: "str", description: "Free-text Lucene query" },
+        { name: "status", type: "str", description: "Recall status" },
+        {
+            name: "classification",
+            type: "str",
+            description: "Recall classification",
+        },
+        { name: "limit", type: "int", default: 10, description: "Max rows" },
+    ],
+    columns: [
+        "rank",
+        "recallNumber",
+        "status",
+        "classification",
+        "voluntary",
+        "recallingFirm",
+        "city",
+        "state",
+        "country",
+        "productDescription",
+        "reasonForRecall",
+        "productQuantity",
+        "distributionPattern",
+        "reportDate",
+        "recallInitiationDate",
+        "terminationDate",
+    ],
+    func: async (_page, kwargs) => {
+        const limit = requireOpenfdaLimit(kwargs.limit, 10, 100);
+        const search = buildFoodRecallSearch(kwargs);
+        const qs = search ? `search=${search}&limit=${limit}` : `limit=${limit}`;
+        const body = (await fetchJson(`${API_BASE}/food/enforcement.json?${qs}`, "openfda food-recall"));
+        const rows = mapFoodRecallRows(Array.isArray(body.results)
+            ? body.results
+            : []);
+        if (rows.length === 0) {
+            throw new Error("openfda food-recall returned no rows for the filter.");
+        }
+        return rows;
+    },
+});
+//# sourceMappingURL=records.js.map

package/dist/adapters/openfda/records.js.map

@@ -0,0 +1 @@
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package/dist/adapters/openreview/papers.d.ts

@@ -0,0 +1,34 @@
+/**
+ * @owner   src/adapters/openreview/papers.ts
+ * @does    Register agent-facing OpenReview search, paper, author, venue, and reviews commands.
+ * @needs   Public api2.openreview.net notes API, forum/profile id validation, note content normalization.
+ * @feeds   surface coverage ledger, scholarly review workflow, agent-readable paper/review rows.
+ * @breaks  OpenReview API envelope drift, content.value parsing, or silent empty threads hide paper review state.
+ */
+interface OpenReviewContentValue {
+    value?: unknown;
+}
+type OpenReviewContent = Record<string, OpenReviewContentValue | undefined>;
+interface OpenReviewNote {
+    id?: unknown;
+    forum?: unknown;
+    cdate?: unknown;
+    pdate?: unknown;
+    invitations?: unknown;
+    signatures?: unknown;
+    content?: OpenReviewContent;
+}
+export declare function coerceOpenReviewInt(value: unknown): number;
+export declare function requireOpenReviewLimit(value: unknown, fallback: number, max: number): number;
+export declare function requireOpenReviewOffset(value: unknown, fallback?: number): number;
+export declare function requireForumId(value: unknown, label?: string): string;
+export declare function requireProfileId(value: unknown): string;
+export declare function readContent(content: OpenReviewContent | undefined, key: string): unknown;
+export declare function formatOpenReviewDate(value: unknown): string;
+export declare function absoluteOpenReviewPdf(value: unknown): string;
+export declare function mapOpenReviewNoteRow(note: OpenReviewNote): Record<string, unknown>;
+export declare function classifyReviewNote(note: OpenReviewNote, isRoot: boolean): string;
+export declare function authorFromSignatures(signatures: unknown): string;
+export declare function mapReviewThreadRows(root: OpenReviewNote, replies: OpenReviewNote[], forum: string, maxLength: number): Array<Record<string, unknown>>;
+export {};
+//# sourceMappingURL=papers.d.ts.map

package/dist/adapters/openreview/papers.d.ts.map

@@ -0,0 +1 @@
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