@zakodium/nmrium-core 0.7.0 → 0.7.1

package/dist/nmrium-core.d.ts

@@ -197,24 +197,11 @@ export declare interface ContourItem {
     numberOfLayers: number;
 }
 
-export declare interface ContourOptions {
+export declare interface ContourLevel {
     positive: ContourItem;
     negative: ContourItem;
 }
 
-declare interface ContourOptions_2 {
-    positive: {
-        contourLevels: [number, number];
-        numberOfLayers: number;
-    };
-    negative: {
-        contourLevels: [number, number];
-        numberOfLayers: number;
-    };
-}
-
-export declare type ContoursLevels = Record<string, Level>;
-
 export declare interface CoreReadReturn {
     /**
      * Common state representation between NMRium component and NMRium apps
@@ -237,7 +224,7 @@ export declare interface CoreReadReturn {
     containsNmrium: boolean;
 }
 
-export declare const CURRENT_EXPORT_VERSION: 13;
+export declare const CURRENT_EXPORT_VERSION: 14;
 
 export declare type CustomWorkspaces = Record<string, InnerWorkspace>;
 
@@ -311,7 +298,6 @@ export declare interface Display1D extends Display {
 export declare interface Display2D extends Color2D, Display {
     isPositiveVisible: boolean;
     isNegativeVisible: boolean;
-    contourOptions: ContourOptions_2;
 }
 
 declare interface DisplayPreferences {
@@ -459,11 +445,6 @@ export declare type Layout = 'portrait' | 'landscape';
 
 export declare type LegendField = JpathLegendField | PredefinedLegendField;
 
-export declare interface Level {
-    positive: ContourItem;
-    negative: ContourItem;
-}
-
 declare interface LoadersPreferences {
     general: GeneralLoadersSelector;
     bruker: BrukerLoaderSelector;
@@ -526,7 +507,7 @@ export declare interface MultipleSpectraAnalysisPreferences {
 
 export declare class NMRiumCore {
     #private;
-    readonly version: 13;
+    readonly version: 14;
     registerPlugin(plugin: NMRiumPlugin): void;
     registerPlugins(plugins: NMRiumPlugin[]): void;
     private getPlugin;
@@ -1206,6 +1187,8 @@ export declare interface SpectraColors {
     indicatorLineColor: string;
 }
 
+export declare type SpectraContourLevels = Record<string, ContourLevel>;
+
 declare type SpectraPredictionOptions = Record<Experiment, boolean>;
 
 export declare interface SpectraPreferences {
@@ -1415,9 +1398,7 @@ export declare interface ViewState {
          */
         showSimilarityTree: boolean;
     };
-    zoom: {
-        levels: ContoursLevels;
-    };
+    spectraContourLevels: SpectraContourLevels;
     /**
      * options to control spectra vertical alignment
      * @default  'bottom'
@@ -1435,8 +1416,8 @@ export declare interface ViewState {
 
 export declare interface WheelOptions {
     shiftKey: boolean;
-    contourOptions: ContourOptions;
-    currentLevel: Level;
+    contourLevel: ContourLevel;
+    currentContourLevel: ContourLevel;
 }
 
 export declare type Workspace = WorkspaceMeta & Required<WorkspacePreferences>;

package/dist/nmrium-core.js

@@ -1,6 +1,6 @@
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lt(e){let{info:t}=e;return t?.dimension===2}function E(e){let{nmriumState:t,plugins:o,options:r}=e;for(let i of o.values()){let n=i.onReadProcess?.onProcessing;n&&n(t,r)}}async function L(e,t,o={}){let{selector:r,converter:i,logger:n}=o,c=[],s=[];for(let u of t.values()){let{onReadProcess:f}=u;f&&(f?.onFiles&&c.push(u),f?.supportedExtensions?.length&&f?.onFile&&s.push(u))}let l=await Promise.allSettled(c.map(u=>u.onReadProcess.onFiles(e,o))),a=[],p=await Promise.allSettled(e.files.flatMap(u=>{let f=w(u.name).toLowerCase();return s.flatMap(d=>{let{supportedExtensions:g,onFile:S}=d.onReadProcess;return g.includes(f)?(a.push({file:u,plugin:d}),S(u,{logger:n,selector:r,converter:i})):[]})})),m={spectra:[],molecules:[]};for(let u=0;u<l.length;u++){let f=l[u];switch(f.status){case"fulfilled":{let{spectra:d=[],molecules:g=[]}=f.value||{};m.spectra.push(...d),m.molecules.push(...g);break}case"rejected":{let d=f.reason,g=c[u];o.logger?.error(`Load file collection with plugin 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p={data:{...s,spectra:[],molecules:[]},...l},m=p.data,{sources:u=[],spectra:f,molecules:d}=m,g=await Promise.all(u.map(async P=>{let h=await ge.fromSource(P,{unzip:{zipExtensions:["zip","nmredata"]}},n);if(!P.baseURL)for(let R of P.entries)R.baseURL||(R.baseURL=n?.baseURL);return[P.id,h]})),S=new Map(g),y=[];for(let P of s.spectra){let h=P.selector?.root??"",R=S.get(h);if(!R){k({spectrum:P,spectraResult:f,logger:o.logger});continue}y.push(z({input:R,spectraResult:f,unserializedSpectrum:P,migrator:r,plugins:i,options:o}))}for(let P of s.molecules??[]){let h=P.selector?.root??"",R=S.get(h);if(!R){V({molecule:P,moleculesResult:d,logger:o.logger});continue}y.push(U({input:R,unserializedMolecule:P,moleculesResult:d,migrator:r,plugins:i,options:o}))}await Promise.allSettled(y);for(let[P,h]of S.entries())a.appendFileCollection(h,P);return{state:p,aggregator:a,containsNmrium:!0}}async function _(e){let{file:t,options:o={},migrator:r,plugins:i,fromSourceOptions:n}=e,c="byteLength"in t?t:await 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e.version!="number"||Number.isNaN(e.version))throw new Error("Not a valid NMRium archive, no version specified");if(e.version===0)throw new Error("NMRium Archive generated behind experimental flag are not supported.");if(!e.state)throw new Error("NMRium Archive corrupted, state.json is missing")}function he(e){return e.filter(t=>!yt(t.relativePath))}function yt(e){return e.startsWith("META-INF/")||e==="state.json"||e==="index.txt"}async function Ne(e){let{options:t,plugins:o,migrator:r}=e,i=await Pt.fromIum(e.input),n=await Pe(i);xe(n);let c=he(i),s=r(n.state),l={...s,data:{...s.data,spectra:[],molecules:[]}},a=l.data.spectra,p=l.data.molecules,m=s.data?.spectra??[],u=s.data?.molecules??[],f=xt(i),d=[];for(let g of m)d.push(ht({subRoots:f,unserializedSpectrum:g,spectraResult:a,options:t,plugins:o,migrator:r}));for(let g of u)d.push(Nt({subRoots:f,unserializedMolecule:g,moleculesResult:p,options:t,plugins:o,migrator:r}));return await 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function Ie(e){let{source:t,plugins:o,options:r={}}=e,{converter:i,...n}=r,{selectorRoot:c=x()}=r,s={...t,id:c},l={spectra:[],molecules:[]},a=await Oe.fromSource(s,{unzip:{zipExtensions:["zip","nmredata"]}}),{spectra:p=[],molecules:m=[]}=await L(a,o,{converter:{...i,bruker:{keepFiles:!0,...Reflect.get(i??{},"bruker")}},...n});l.spectra.push(...p),l.molecules.push(...m);for(let S of l.spectra)S.selector??={root:c},S.selector.root=c;for(let S of l.molecules)S.selector??={root:c},S.selector.root=c;l.sources??=[],l.sources.push(s);let u=T({version:14,data:l},r?.selector?.general),{onLoadProcessing:f}=n,d={filters:f?.filters,autoProcessing:f?.autoProcessing??!1,experimentalFeatures:r.experimentalFeatures};E({nmriumState:u,plugins:o,options:d});let g=new Oe().appendFileCollection(a,c);return{state:u,aggregator:g,containsNmrium:!1}}function D(e,t){let o={};for(let r in e)t.includes(r)||(o[r]=e[r]);return o}var 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f=c.get(u.sourceUUID),d=p.get(u.sourceUUID),g=f?.baseURL?.startsWith("ium:/")?"embedded":"linked",y=i.paths[u.sourceUUID]?.replace(m,""),P=u.relativePath.replace(d?.relativePath??"",""),h=y?y+P:u.relativePath;s.push(`	${h}	(${g})`)}s.push(`
 `)}return s.join(`
-`)}var ne=class{version=13;#e=new Map;registerPlugin(t){if(this.#e.has(t.id)){console.warn(`Plugin ${t.id} is already registered. skip.`),console.debug("Plugin already registered:",this.#e.get(t.id)),console.debug("Plugin to register:",t);return}this.#e.set(t.id,t)}registerPlugins(t){for(let o of t)this.registerPlugin(o)}getPlugin(t){return this.#e.get(t)}migrate(t){return ue(t,this.version,this.#e)}read(t,o={},r){return D({input:t,options:o,fromSourceOptions:r,migrator:this.migrate.bind(this),plugins:this.#e})}readNMRiumArchive(t,o={}){return Ne({input:t,options:o,plugins:this.#e,migrator:this.migrate.bind(this)})}readNMRiumObject(t,o,r){return j({nmriumObjectInput:t,options:o,fromSourceOptions:r,plugins:this.#e,migrator:this.migrate.bind(this)})}readNMRiumFile(t,o={},r){return _({file:t,options:o,fromSourceOptions:r,plugins:this.#e,migrator:this.migrate.bind(this)})}readFromWebSource(t,o){return Oe({source:t,options:o,plugins:this.#e})}serializeNmriumState(t,o){return Ie(t,this.#e,o)}serializeNmriumArchive(t){let o=this.serializeNmriumState.bind(this);return ve(o,t)}serializePlugins(){let t={plugins:{}};return I(t,this.#e),t.plugins}slot(t){return pe({slot:t,plugins:this.#e})}};function Tt(e,t){if(t>13)return 0;let o=-1;for(let r=0;r<e.length;r++)if(e[r].version>t){o=r;break}return o}var Me=[{version:6,fun:C},{version:7,fun:A}];function Et(e){let{version:t}=e||{},o=Tt(Me,t);if(o===-1)return{...e,version:13};let r=Me.slice(o);for(let i of r)e=i.fun(e);return e}export{Ce as ANALYSIS_COLUMN_TYPES,Ae as ANALYSIS_COLUMN_VALUES_KEYS,N as CURRENT_EXPORT_VERSION,Fe as EXTERNAL_API_KEYS,ne as NMRiumCore,Ge as defineNMRiumPlugin,$e as formatSpectra,x as generateID,W as getOneIfArray,Et as migrateSettings,we as units};
+`)}var se=class{version=14;#e=new Map;registerPlugin(t){if(this.#e.has(t.id)){console.warn(`Plugin ${t.id} is already registered. skip.`),console.debug("Plugin already registered:",this.#e.get(t.id)),console.debug("Plugin to register:",t);return}this.#e.set(t.id,t)}registerPlugins(t){for(let o of t)this.registerPlugin(o)}getPlugin(t){return this.#e.get(t)}migrate(t){return pe(t,this.version,this.#e)}read(t,o={},r){return v({input:t,options:o,fromSourceOptions:r,migrator:this.migrate.bind(this),plugins:this.#e})}readNMRiumArchive(t,o={}){return Ne({input:t,options:o,plugins:this.#e,migrator:this.migrate.bind(this)})}readNMRiumObject(t,o,r){return j({nmriumObjectInput:t,options:o,fromSourceOptions:r,plugins:this.#e,migrator:this.migrate.bind(this)})}readNMRiumFile(t,o={},r){return _({file:t,options:o,fromSourceOptions:r,plugins:this.#e,migrator:this.migrate.bind(this)})}readFromWebSource(t,o){return Ie({source:t,options:o,plugins:this.#e})}serializeNmriumState(t,o){return ve(t,this.#e,o)}serializeNmriumArchive(t){let o=this.serializeNmriumState.bind(this);return Me(o,t)}serializePlugins(){let t={plugins:{}};return I(t,this.#e),t.plugins}slot(t){return me({slot:t,plugins:this.#e})}};function Et(e,t){if(t>14)return 0;let o=-1;for(let r=0;r<e.length;r++)if(e[r].version>t){o=r;break}return o}var Ce=[{version:6,fun:C},{version:7,fun:w}];function Lt(e){let{version:t}=e||{},o=Et(Ce,t);if(o===-1)return{...e,version:14};let r=Ce.slice(o);for(let i of r)e=i.fun(e);return e}export{we as ANALYSIS_COLUMN_TYPES,Ae as ANALYSIS_COLUMN_VALUES_KEYS,b as CURRENT_EXPORT_VERSION,Te as EXTERNAL_API_KEYS,se as NMRiumCore,Je as defineNMRiumPlugin,Ge as formatSpectra,x as generateID,W as getOneIfArray,Lt as migrateSettings,Fe as units};

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@zakodium/nmrium-core",
-  "version": "0.7.0",
+  "version": "0.7.1",
   "description": "The core of NMRium: types, state, state migration and plugin system.",
   "author": "Zakodium Sàrl",
   "license": "CC-BY-NC-SA-4.0",
@@ -47,5 +47,5 @@
   "volta": {
     "extends": "../../../package.json"
   },
-  "gitHead": "091cf59cbdda51c296d7442f9e84237ad94d0672"
+  "gitHead": "176a331e9d92d157e0f7cbdc11bf37c7f334c4dd"
 }