@zakodium/nmrium-core 0.2.0 → 0.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/nmrium-core.d.ts +4 -2
- package/dist/nmrium-core.js +2 -2
- package/package.json +2 -2
package/dist/nmrium-core.d.ts
CHANGED
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@@ -19,7 +19,7 @@ import type { ReactNode } from 'react';
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import type { Source } from 'file-collection';
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import type { Zones } from '@zakodium/nmr-types';
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-
declare interface ACSExportOptions {
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export declare interface ACSExportOptions {
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/**
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* Filters ranges for generation
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* If signalKind is "all", include all ranges.
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@@ -62,6 +62,8 @@ declare interface ACSExportOptions {
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couplingFormat: string;
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}
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export declare type ACSExportSettings = Record<string, ACSExportOptions>;
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+
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export declare interface ActiveSpectrum {
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id: string;
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index: number;
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@@ -1228,7 +1230,7 @@ export declare interface WorkspacePreferences {
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externalAPIs?: ExternalAPI[];
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export?: ExportPreferences;
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peaksLabel?: PeaksLabel;
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-
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+
acsExportSettings?: ACSExportSettings;
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}
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/**
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package/dist/nmrium-core.js
CHANGED
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@@ -1,4 +1,4 @@
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1
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-
var ue={NORMAL:"NORMAL",FORMULA:"FORMULA"};var me={RELATIVE:"relative",ABSOLUTE:"absolute",MIN:"min",MAX:"max"};var fe=[{name:"pixels",unit:"px"},{name:"inches",unit:"in"},{name:"feet",unit:"ft"},{name:"yards",unit:"yd"},{name:"centimeters",unit:"cm"},{name:"millimeters",unit:"mm"},{name:"meters",unit:"m"},{name:"points",unit:"pt"},{name:"picas",unit:"pc"}];var
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1
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+
var ue={NORMAL:"NORMAL",FORMULA:"FORMULA"};var me={RELATIVE:"relative",ABSOLUTE:"absolute",MIN:"min",MAX:"max"};var fe=[{name:"pixels",unit:"px"},{name:"inches",unit:"in"},{name:"feet",unit:"ft"},{name:"yards",unit:"yd"},{name:"centimeters",unit:"cm"},{name:"millimeters",unit:"mm"},{name:"meters",unit:"m"},{name:"points",unit:"pt"},{name:"picas",unit:"pc"}];var P=9;var ge=[{key:"CT",description:"CT from NMR Solutions"}];import{isAnyArray as Se}from"is-any-array";import{xMultiply as j}from"ml-spectra-processing";var de=crypto.randomUUID.bind(crypto),b=de;function N(e){let{id:t=b(),meta:o,peaks:r={},filters:n=[],info:i={},ranges:p={},integrals:s={},selector:a,dependentVariables:l=[],...u}=e,c={id:t,meta:o,filters:n},{data:d=ye(l[0].components)}=e;if(Array.isArray(i.nucleus)&&(i.nucleus=i.nucleus[0]),c.data={x:[],re:[],im:[],...d},"scaleFactor"in i){let{scaleFactor:m}=i,{re:g,im:S}=c.data;j(g,m,{output:g}),S&&j(S,m,{output:S})}a&&(c.selector=a);let f=Se(d.im);if(c.info={phc0:0,phc1:0,nucleus:"1H",isFid:!1,isComplex:f,dimension:1,name:i?.name||t,...i},i.isFid&&i.reverse&&f){let{im:m}=c.data;j(m,-1,{output:m}),c.info.reverse=!1}return c.display={isVisible:!0,isPeaksMarkersVisible:!0,isRealSpectrumVisible:!0,isVisibleInDomain:!0,...e.display},c.peaks={values:[],options:{},...r},c.ranges={values:[],options:{sum:null,isSumConstant:!0,sumAuto:!0},...p},c.integrals={values:[],options:{},...s},{...u,...c}}function ye(e){let t=e[0]?.data?.x||[],o=e[0]?.data?.re||e[0]?.data?.y||[],r=e[0]?.data?.im||e[1]?.data?.y||null;return t.length>0&&t[0]>t[1]&&(t.reverse(),o.reverse(),r&&r.reverse()),{x:t,re:o,im:r}}import{matrixToArray as Pe,xMinMaxValues as xe,xNoiseSanPlot as be}from"ml-spectra-processing";var L={z:[[]],minX:0,minY:0,maxX:0,maxY:0},Ne={re:L,im:L},he={rr:L};function O(e){let{id:t=b(),meta:o={},dependentVariables:r=[],info:n={},filters:i=[],zones:p=[],...s}=e,a={id:t,meta:o,filters:i};a.info={nucleus:["1H","1H"],isFid:!1,isComplex:!1,name:n?.name||b(),...n},a.originalInfo=structuredClone(a.info),a.display={isPositiveVisible:!0,isNegativeVisible:!0,isVisible:!0,dimension:2,...e.display,...e.display};let{data:l=r[0].components}=e;if(a.data={...a.info.isFid?Ne:he,...l},a.originalData=structuredClone(a.data),!("spectrumSize"in n)){let u=n.isFid?"re":"rr",c=a.data[u].z.length,d=c>0?a.data[u].z[0].length:0;a.info.spectrumSize=[d,c]}if(!n.isFid){let u=a.data.rr,c=Pe(u.z),{positive:d,negative:f}=be(c),{min:m,max:g}=xe(c);a.data.rr={...u,minZ:m,maxZ:g},a.info.noise={positive:d,negative:f}}return a.zones={values:[],options:{},...p},{...s,...a}}import{xSequentialFillFromTo as Oe}from"ml-spectra-processing";import{isAnyArray as De}from"is-any-array";function U(e,t=0){if(De(e)){let o=e.at(t);if(o!==void 0)return o;throw new RangeError("An array with a index out of boundaries")}return e}var Re=new Set(["t1ir","T1"]);function J(e){let t=[];for(let o of e){let{info:{pulseSequence:r,isFid:n}}=o,{data:i,info:p,meta:{vdlistValues:s=[]}}=o;if(!(r&&Re.has(r))||s.length===0){t.push(o);continue}let l=n?"re":"rr",u={};for(let y in p)u[y]=U(p[y]);let{z:c,maxX:d,minX:f}=i[l],m=Oe({from:f,to:d,size:c[0].length}),[g,S]=Ie(o);for(let y=0;y<s.length;y++){let h={re:m,x:m};for(let D in i)h[Ce(D)]=i[D].z.at(g*(y+S));t.push(N({data:h,info:{...u,name:`${u.name}_${s[y]}`,dimension:1,vd:s[y]}}))}}return t}function Ce(e){return["rr","re"].includes(e)?"re":["im","ri","ir","ii"].includes(e)?"im":"x"}function Ie(e){let{meta:{PAGE:t}}=e,o=!0;if(t){let r=n=>Number.parseFloat(n.replace(/[F|T]1=/,""));o=r(t[0])>r(t[2])}return o?[-1,1]:[1,0]}var ve=2,Ae=1;function Te(e){let{spectra:t=[],molecules:o}=e,r=[];for(let n of t){let{info:i}=n;switch(i.dimension){case Ae:r.push(N(n));break;case ve:r.push(O(n));break;default:throw new Error("dimension does not supported")}}return{molecules:o,spectra:J(r)}}function we(e){return e}function R(e,t){e.plugins||(e.plugins={});let o=e.plugins;for(let r of t.values())o[r.id]||(o[r.id]={id:r.id,version:r.version}),o[r.id].id=r.id,o[r.id].version=r.version}function x(e,t){return JSON.parse(JSON.stringify(e),function(r,n){if(r in t){this[t[r]]=n;return}return n})}function V(e){if(e?.version===1)return e;let t={...e,version:1},o={j:"js",signal:"signals",integral:"integration",peak:"peaks",diaID:"diaIDs"};for(let r of t.spectra){if(r.ranges){let n=x(r.ranges,o);r.ranges=Array.isArray(n)?{values:n}:n}else if(r.zones){let n=x(r.zones,o);r.zones=Array.isArray(n)?{values:n}:n}r.peaks&&(r.peaks=Array.isArray(r.peaks)?{values:r.peaks}:r.peaks),r.integrals&&(r.integrals=Array.isArray(r.integrals)?{values:r.integrals}:r.integrals)}return t}function _(e){if(e?.version===2)return e;let t={...e,version:2},o={peaks:{delta:"x",originDelta:"originalX",intensity:"y"},ranges:{atomIDs:"atoms",intensity:"y"}};for(let r of t.spectra)r.peaks?r.peaks=x(r.peaks,o.peaks):r.ranges?r.ranges=x(r.ranges,o.ranges):r.zones&&(r.zones.values=Ee(r.zones.values));return t}function Ee(e){return e.map(t=>(t.signals&&(t.signals=t.signals.map(o=>{if(o.x&&o.y){let{x:{fromTo:r,...n},y:{fromTo:i,...p}}=o;o={...o,x:{...n,...r},y:{...p,...i}}}else{let{fromTo:r,deltaX:n,resolutionX:i,nucleusX:p,deltaY:s,resolutionY:a,nucleusY:l,shiftX:u,shiftY:c,...d}=o;o={...d,x:{from:r[0].from,to:r[0].to,delta:n,resolution:i,nucleus:p},y:{from:r[1].from,to:r[1].to,delta:s,resolution:a,nucleus:l}}}return o},[])),t),[])}var Me={name:"apodization",label:"Apodization",value:{lineBroadening:1,gaussBroadening:0,lineBroadeningCenter:0}};function z(e){if(e?.version===3)return e;let t={...e,version:3};for(let o of t.spectra)if(Array.isArray(o?.filters)&&o?.filters.length>0){let r=o.filters.findIndex(n=>n.name==="lineBroadening");if(r!==-1){let n={...o.filters[r],...Me};o.filters[r]=o.filters[r-1],o.filters[r-1]=n}}return t}function B(e){if(e?.version===4)return e;let{version:t,...o}=e,r=[],n={};for(let{source:s,...a}of o.spectra){let l={},{info:u={},display:c={}}=a;if(u?.dimension===2&&!s?.jcampURL)if(u.isFt)l.data={rr:a.data};else continue;if(s?.jcampURL){let{jcampURL:m,jcampSpectrumIndex:g}=s,S=m.match(/(?<baseURL>^\w+:\/{2}\w+\/)(?<relativePath>.*)/);n[m]||(n[m]={baseURL:S?.groups.baseURL||"",relativePath:S?.groups.relativePath||m.replace(/^\.\//,"")}),l.sourceSelector={files:[n[m].relativePath]},g!==void 0&&(l.sourceSelector.jcamp={index:g})}l.filters=Fe(a.filters);let{name:d,...f}=c;d&&(l.info={...u,name:d}),l.display=f,r.push({...a,...l})}let i={data:{...o,spectra:r},version:4},p={entries:Object.values(n)};return p.entries.length>0&&(i.data.source=p),i}function Fe(e=[]){let t=[];for(let o of e){let{name:r,value:n}=o;switch(r){case"zeroFilling":t.push({...o,value:{nbPoints:n}});break;case"shiftX":case"shift2DX":case"shift2DY":t.push({...o,value:{shift:n}});break;default:t.push({...o})}}return t}function K(e){if(e?.version===5)return e;let t={...e,version:5},o={originFrom:"originalFrom",originTo:"originalTo",originDelta:"originalDelta",originX:"originalX",originY:"originalY",originZ:"originalZ"};for(let r of t?.data?.spectra||[])for(let n of["peaks","ranges","zones"])r?.[n]&&(r[n]=x(r[n],o));return t}function X(e){if(e?.version===6)return e;let t={...e,version:6};for(let o of t?.data?.spectra||[]){let{digitalFilter:r,fft:n,phaseCorrection:i}=ke(o);n?.flag&&r?.flag&&i&&Math.floor(r.value.digitalFilterValue)%2>0&&(i.value.ph0-=180)}return t}function ke(e,t=["phaseCorrection","fft","digitalFilter"]){let{filters:o=[]}=e,r={};for(let n of t)r[n]=o.find(i=>i.name===n);return r}function C(e,t="localStorage"){if(e?.version===7)return e;if(t==="nmrium")return H(e);let o={...e,version:7};for(let r in e.workspaces)o.workspaces[r]=H(o.workspaces[r]);return o}function H(e){let{formatting:{nuclei:t,panels:o}={nuclei:null,panels:null},version:r,...n}=e,i={...n};return t&&(i.nuclei=je(t)),o&&(i.panels=o),i}function je(e){let t=[],o={name:"nucleus",ppm:"ppmFormat",hz:"hzFormat"};for(let r in e)t.push(x(e[r],o));return t}function Y(e){if(e?.version===7)return e;let t={...e,version:7};return t?.settings&&(t.settings=C(t.settings,"nmrium")),t}function I(e,t="localStorage"){if(e?.version===8)return e;if(t==="nmrium")return Q(e);let o={...e,version:8};for(let r in e.workspaces)o.workspaces[r]=Q(o.workspaces[r]);return o}function Q(e){let{version:t,...o}=e,r={...o};return r.display.panels=Le(e),r}function Le(e){let t={},o=e.display.panels;for(let r of Object.keys(o)){let{display:n,open:i}=o[r];t[r]={display:n,visible:n,open:i}}return t}function W(e){if(e?.version===8)return e;let t={...e,version:8};t?.settings&&(t.settings=I(t.settings,"nmrium"));for(let o of t?.data?.spectra||[]){let{filters:r=[]}=o;for(let s=0;s<r.length;s++){let{flag:a,isDeleteAllow:l,label:u,...c}=r[s];r[s]={...c,enabled:a}}let n=r.findIndex(s=>s.name==="apodization");if(n!==-1){let s=r[n],{lineBroadening:a,gaussBroadening:l,lineBroadeningCenter:u}=s.value;s.value={exponential:{apply:!0,options:{lineBroadening:l>0?-a:a}}},l>0&&(s.value.gaussian={apply:!0,options:{lineBroadening:.6*l,lineBroadeningCenter:u}}),r[n]=s}let i=r.findIndex(s=>s.name==="apodizationDimension1"),p=r.findIndex(s=>s.name==="apodizationDimension2");if(i!==-1){let s=r[i],{shapes:a}=s.value.compose;s.value=ee(a)}if(p!==-1){let s=r[p],{shapes:a}=s.value.compose;s.value=ee(a)}}return t}function ee(e){let t={};for(let{shape:o}of e){let{kind:r,options:n}=o;if(r==="sineBell"){let{exponent:i,offset:p}=n,s=i===2?"sineSquare":"sineBell";t[s]={apply:!0,options:{offset:p}}}}return t}function $(e){let{version:t,plugins:o,...r}=e;return t===9?e:{version:9,plugins:{},...r}}var Ue=[V,_,z,B,K,X,Y,W,$];function te(e,t,o){let r=structuredClone(e),n=Object.entries(e?.plugins??{});for(let[s,{version:a}]of n){let l=o.get(s);if(!(l&&l.version>=a)){if(l){console.warn(`Plugin "${l.id}" is loaded with a version older (${l.version}) than the one used to save the state (${a}).
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NMRium may fail to load the state.
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Please update the plugin to the latest version.`);continue}console.warn(`Plugin "${s}@${a}" is not registered. NMRium may fail to load the state.
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Please consider open this file with the plugin installed.`)}}let i=new Set,p=()=>{let s=r.version;for(let a of o.values())for(let l of a.migrations){if(i.has(l)||s<l.minCore||l.maxCore&&s>l.maxCore)continue;if((r.plugins?.[a.id]?.version||0)===a.version)break;r=l.up(r),i.add(l)}};for(let s=e?.version||0;s<t;s++){let a=Ue[s];r=a(r),p()}return p(),R(r,o),r}import{FileCollection as $e}from"file-collection";var re={SDF:"sdf",MOL:"mol",NMRIUM:"nmrium",JSON:"json",JCAMP:"jcamp",DX:"dx",JDX:"jdx",JDF:"jdf",NMREDATA:"nmredata",SMILES:"smiles",SMI:"smi"};function v(e){return e.includes(".")?e.replace(/^.*\./,"").toLowerCase():""}function
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+
Please consider open this file with the plugin installed.`)}}let i=new Set,p=()=>{let s=r.version;for(let a of o.values())for(let l of a.migrations){if(i.has(l)||s<l.minCore||l.maxCore&&s>l.maxCore)continue;if((r.plugins?.[a.id]?.version||0)===a.version)break;r=l.up(r),i.add(l)}};for(let s=e?.version||0;s<t;s++){let a=Ue[s];r=a(r),p()}return p(),R(r,o),r}import{FileCollection as $e}from"file-collection";var re={SDF:"sdf",MOL:"mol",NMRIUM:"nmrium",JSON:"json",JCAMP:"jcamp",DX:"dx",JDX:"jdx",JDF:"jdf",NMREDATA:"nmredata",SMILES:"smiles",SMI:"smi"};function v(e){return e.includes(".")?e.replace(/^.*\./,"").toLowerCase():""}function T(e,t={},o){let{data:r,...n}=e;if(!r)return e;let{spectra:i=[]}=r,{keep1D:p=!0,keep2D:s=!0,onlyReal:a}=t,l=a?"ft":t.dataSelection||"both",u=[];for(let c of i){if(!c.info){u.push(c);continue}let{isFid:d,dimension:f,name:m}=c.info;if(!A(f===1&&!p,m,o)&&!A(f===2&&!s,m,o)&&!A(d&&l==="ft",m,o)&&!A(!d&&l==="fid",m,o))if(a&&!d)if(c.info.isComplex=!1,Ve(c)){let{rr:g}=c.data;u.push({...c,data:{rr:g}})}else{let{re:g,x:S}=c.data;u.push({...c,data:{re:g,x:S}})}else u.push(c)}return{data:{...r,spectra:u},...n}}function A(e,t,o){return e?(o?.warn(`Skipping ${t} because it didn't match the import filters.`),!0):!1}function Ve(e){let{info:t}=e;return t?.dimension===2}function w(e){let{nmriumState:t,plugins:o,options:r}=e;for(let n of o.values()){let i=n.onReadProcess?.onProcessing;i&&i(t,r)}}async function E(e,t,o={}){let{sourceSelector:r,converter:n,keepSource:i,logger:p}=o,s=[],a=[];for(let f of t.values()){let{onReadProcess:m}=f;m&&(m?.onFiles&&s.push(f),m?.supportedExtensions?.length&&m?.onFile&&a.push(f))}let l=await Promise.allSettled(s.map(f=>f.onReadProcess.onFiles(e,o))),u=[],c=await Promise.allSettled(e.files.flatMap(f=>{let m=v(f.name).toLowerCase();return a.flatMap(g=>{let{supportedExtensions:S,onFile:y}=g.onReadProcess;return S.includes(m)?(u.push({file:f,plugin:g}),y(f,{logger:p,sourceSelector:r,converter:n,keepSource:i})):[]})})),d={spectra:[],molecules:[]};for(let f=0;f<l.length;f++){let m=l[f];switch(m.status){case"fulfilled":{let{spectra:g=[],molecules:S=[]}=m.value||{};d.spectra.push(...g),d.molecules.push(...S);break}case"rejected":{let g=m.reason,S=s[f];o.logger?.error(`Load file collection with plugin ${S.id}@${S.version} fails with: ${g}`);break}}}for(let f=0;f<c.length;f++){let m=c[f];switch(m.status){case"fulfilled":{let{spectra:g=[],molecules:S=[]}=m.value||{};d.spectra.push(...g),d.molecules.push(...S);break}case"rejected":{let g=m.reason,{file:S,plugin:y}=u[f];o.logger?.error(`Load file ${S.relativePath} with plugin ${y.id}@${y.version} fails with: ${g}`);break}}}return d}import{FileCollection as Xe}from"file-collection";import{FileCollection as _e}from"file-collection";import oe from"lodash.merge";import{xIsEquallySpaced as ze}from"ml-spectra-processing";async function M(e){let{nmriumObjectInput:t,options:o={},migrator:r,plugins:n}=e,i=r(t),{data:p,...s}=i;if(!p)return{...s};let a={data:{...p,spectra:[]},...s},l=a.data,{source:u,spectra:c,molecules:d}=l,f;u&&(f=await _e.fromSource(u,{unzip:{zipExtensions:["zip","nmredata"]}}));let m=[];for(let g of p.spectra)if(f){let{sourceSelector:S}=g,y=F({input:f,migrator:r,plugins:n,options:{...o,sourceSelector:S}}).then(h=>{let{nmriumState:{data:D}}=h,{spectra:pe=[],molecules:q=[]}=D||{};q.length>0&&d.length===0&&d.push(...q);for(let ce of pe)c.push(Be(g,Ke(ce)))});m.push(y)}else{let{dimension:S}=g.info;if(S===1){if(!ze(g.data)){o.logger?.error('The ".nmrium" file is corrupted; the X-axis values are not equally distant.');continue}c.push(N(g))}else S===2&&c.push(O(g))}return await Promise.allSettled(m),a}function Be(e,t){let{data:o,...r}=e;if("ranges"in t){let{data:n,...i}=t;return{...oe(i,r),data:n}}else if("zones"in t){let{data:n,...i}=t;return{...oe(i,r),data:n}}else return t}function Ke(e){return{...e,id:b()}}async function ne(e){let{file:t,options:o={},migrator:r,plugins:n}=e,i=await t.arrayBuffer(),p=await(We(i)?Ye(i):t.text());return M({nmriumObjectInput:JSON.parse(p),plugins:n,migrator:r,options:o})}async function Ye(e){let t=await Xe.fromZip(e);if(t.files.length===0)throw new Error("compressed nmrium file is corrupted");return t.files[0].text()}function We(e){if(e.byteLength<4)return!1;let t=new Uint8Array(e);return t[0]===80&&t[1]===75&&(t[2]===3||t[2]===5||t[2]===7)&&(t[3]===4||t[3]===6||t[3]===8)}async function F(e){let{options:t={},input:o,migrator:r,plugins:n}=e,i=qe(await Ge(o),t.sourceSelector?.files),p=Je(i);if(p)return{nmriumState:await ne({file:p,migrator:r,plugins:n,options:t}),containsNmrium:!0};let s=await E(i,n,t),a=T({version:9,data:s},t?.sourceSelector?.general,t.logger),{onLoadProcessing:l,experimentalFeatures:u}=t,c={...l,autoProcessing:l?.autoProcessing??!1,experimentalFeatures:u};return w({nmriumState:a,plugins:n,options:c}),{nmriumState:a,containsNmrium:!1}}function Ge(e){return Array.isArray(e)?Promise.reject(new Error("For a set of fileCollectionItems pass a FileCollection instance")):Ze(e)?Promise.resolve(e):new $e().appendExtendedSource({...e,uuid:crypto.randomUUID()})}function Ze(e){return typeof e=="object"&&"files"in e}function qe(e,t){if(!t)return e;let o=new Set(t);return e.filter(r=>o.has(r.relativePath))}function Je(e){return e.files.find(t=>v(t.name).toLowerCase()===re.NMRIUM)}function k(e,t){let o={};for(let r in e)t.includes(r)||(o[r]=e[r]);return o}var He=["data","originalData","info","originalInfo","meta","customInfo"],Qe=["sourceSelector","originalData","originalInfo"];function ie(e,t,o={}){let{version:r,data:n}=e;if(n.actionType)return e;let i={version:r,plugins:e.plugins},{includeData:p}=o;p!=="noData"&&(i.data=et({...n},p));let{includeSettings:s,includeView:a}=o;return s&&(i.settings=e.settings),a&&(i.view=e.view),R(i,t),i}function et(e,t="rawData"){let{spectra:o}=e;switch(t){case"dataSource":return tt(e);case"rawData":return{...k(e,["source"]),spectra:o.map(ot)};default:return e}}function tt(e){let{spectra:t}=e;if(!e.source)throw new Error("source property should exists for dataSource serialization");return{...e,spectra:t.map(rt)}}function rt(e){return k(e,He)}function ot(e){let{data:t,info:o,originalData:r,originalInfo:n}=e,i=k(e,Qe);return i.data=r||t,i.info=n||o,i}var nt=["topbar.right","topbar.about_us.modal"],it=[],qr=[...nt,...it],st={},G={};{let e=st,t=G;for(let[o,r]of Object.entries(e))t[r]||(t[r]=[]),t[r]?.push(o)}function*se(e){let{slot:t,plugins:o,supportedToDeprecatedSlots:r=G}=e,n=r[t];for(let[i,p]of o.entries()){let s=p.ui;if(!s)continue;let a=s[t];if(a){yield[i,a];continue}if(n)for(let l of n){let u=p.ui?.[l];if(u){yield[i,u],console.warn(`Plugin ${p.id} used deprecated slot "${l}". Please update this plugin to use "${t}" instead.`);break}}}}import{FileCollection as at}from"file-collection";async function ae(e){let{source:t,plugins:o,options:r={}}=e,{keepSource:n=!0,converter:i,...p}=r,s={source:t,spectra:[],molecules:[]},a=await at.fromSource(t,{unzip:{zipExtensions:["zip","nmredata"]}}),{spectra:l=[],molecules:u=[]}=await E(a,o,{keepSource:n,converter:{...i,bruker:{keepFiles:!0,...Reflect.get(i??{},"bruker")}},...p});s.spectra.push(...l),s.molecules.push(...u);let c=T({version:9,data:s},r?.sourceSelector?.general),{onLoadProcessing:d}=p,f={filters:d?.filters,autoProcessing:d?.autoProcessing??!1,experimentalFeatures:r.experimentalFeatures};return w({nmriumState:c,plugins:o,options:f}),c}var Z=class{version=9;#e=new Map;registerPlugin(t){if(this.#e.has(t.id)){console.warn(`Plugin ${t.id} is already registered. skip.`),console.debug("Plugin already registered:",this.#e.get(t.id)),console.debug("Plugin to register:",t);return}this.#e.set(t.id,t)}registerPlugins(t){for(let o of t)this.registerPlugin(o)}migrate(t){return te(t,this.version,this.#e)}read(t,o={}){return F({input:t,migrator:this.migrate.bind(this),plugins:this.#e,options:o})}readNMRiumObject(t,o){return M({nmriumObjectInput:t,options:o,plugins:this.#e,migrator:this.migrate.bind(this)})}readFromWebSource(t,o){return ae({source:t,options:o,plugins:this.#e})}serializeNmriumState(t,o){return ie(t,this.#e,o)}slot(t){return se({slot:t,plugins:this.#e})}};function lt(e,t){if(t>9)return 0;let o=-1;for(let r=0;r<e.length;r++)if(e[r].version>t){o=r;break}return o}var le=[{version:6,fun:C},{version:7,fun:I}];function pt(e){let{version:t}=e||{},o=lt(le,t);if(o===-1)return{...e,version:9};let r=le.slice(o);for(let n of r)e=n.fun(e);return e}export{ue as ANALYSIS_COLUMN_TYPES,me as ANALYSIS_COLUMN_VALUES_KEYS,P as CURRENT_EXPORT_VERSION,ge as EXTERNAL_API_KEYS,Z as NMRiumCore,we as defineNMRiumPlugin,Te as formatSpectra,b as generateID,U as getOneIfArray,pt as migrateSettings,fe as units};
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@zakodium/nmrium-core",
|
|
3
|
-
"version": "0.2.
|
|
3
|
+
"version": "0.2.1",
|
|
4
4
|
"description": "The core of NMRium: types, state, state migration and plugin system.",
|
|
5
5
|
"author": "Zakodium Sàrl",
|
|
6
6
|
"license": "CC-BY-NC-SA-4.0",
|
|
@@ -44,5 +44,5 @@
|
|
|
44
44
|
"volta": {
|
|
45
45
|
"extends": "../../../package.json"
|
|
46
46
|
},
|
|
47
|
-
"gitHead": "
|
|
47
|
+
"gitHead": "3ae265679edc9e722d29dc66f3338d9fb8ab2062"
|
|
48
48
|
}
|