@zakodium/nmrium-core 0.0.2 → 0.1.1

package/README.md

@@ -19,6 +19,7 @@ Provide state and migrate it for different version of NMRium.
 Delegate loading and processing state to plugins.
 
 It contains the following features:
+
 - **read**: read a file and return a data structure with the spectra and molecules for `.nmrium` files
 - **plugin system**: allow to register plugins to handle different file formats
 - **serialize**: Serialize the state
@@ -48,7 +49,7 @@ console.log(result);
 //   molecules: [],
 // }
 
-// readSource function accept a partial FileCollectionItems and a baseURL to generate a 
+// readSource function accept a partial FileCollectionItems and a baseURL to generate a
 // data structure with a source object inside with { files, filter, baseURL }
 
 const nmriumObject = await core.readFromWebSource(
@@ -63,7 +64,6 @@ const nmriumObject = await core.readFromWebSource(
   },
   {},
 );
-
 ```
 
 ## License
@@ -77,5 +77,7 @@ This package is based on MIT-licensed code that can be found here: https://doi.o
 [download-image]: https://img.shields.io/npm/dm/@zakodium/nmrium-core.svg
 [download-url]: https://www.npmjs.com/package/@zakodium/nmrium-core
 [doi-image]: https://zenodo.org/badge/DOI/10.5281/zenodo.7101438.svg
+
 <!-- TODO: fix doi-url for nmrium-core package -->
-[doi-url]: https://doi.org/10.5281/zenodo.7101438
+
+[doi-url]: https://doi.org/10.5281/zenodo.7101438

package/dist/nmrium-core.d.ts

@@ -16,7 +16,6 @@ import type { NmrData2D } from 'cheminfo-types';
 import type { Peaks } from 'nmr-processing';
 import type { Ranges } from 'nmr-processing';
 import { SerializedNmriumState } from './core_serialize.js';
-import { UUID } from 'crypto';
 import type { WebSource } from 'filelist-utils';
 import type { Zones } from 'nmr-processing';
 
@@ -295,7 +294,7 @@ declare interface GeneralPreferences {
     invertScroll: boolean;
 }
 
-export declare const generateID: () => UUID;
+export declare const generateID: () => `${string}-${string}-${string}-${string}-${string}`;
 
 /**
  * It returns an element if the input is an array otherwise it returns the input.

package/package.json

@@ -1,68 +1,43 @@
 {
   "name": "@zakodium/nmrium-core",
-  "version": "0.0.2",
+  "version": "0.1.1",
   "description": "The core of NMRium: types, state, state migration and plugin system.",
+  "author": "Zakodium Sàrl",
+  "license": "CC-BY-NC-SA-4.0",
   "type": "module",
-  "exports": {
-    ".": {
-      "types": "./dist/nmrium-core.d.ts",
-      "require": "./dist/nmrium-core.cjs",
-      "default": "./dist/nmrium-core.mjs"
-    }
-  },
+  "exports": "./dist/nmrium-core.js",
   "files": [
-    "dist/nmrium-core.d.ts",
-    "dist/nmrium-core.cjs",
-    "dist/nmrium-core.mjs"
+    "dist"
   ],
   "scripts": {
     "api-extractor": "api-extractor run --local",
-    "bundle": "npm run bundle-cjs && npm run bundle-esm && npm run bundle-types",
-    "bundle-common": "esbuild src/index.ts --bundle --packages=external --minify",
-    "bundle-cjs": "npm run bundle-common -- --format=cjs --outfile=./dist/nmrium-core.cjs",
-    "bundle-esm": "npm run bundle-common -- --format=esm --outfile=./dist/nmrium-core.mjs",
+    "bundle": "node scripts/esbuild.js && npm run bundle-types",
     "bundle-types": "npm run tsc && npm run api-extractor",
-    "check-types": "tsc --noEmit",
-    "clean": "rimraf types",
-    "eslint": "eslint src --cache",
-    "eslint-fix": "npm run eslint -- --fix",
+    "clean": "rimraf types dist coverage",
     "dev:eslint-fix": "eslint --cache --fix $(git diff --name-only --relative) --quiet",
-    "prepack": "npm run bundle",
-    "prettier": "prettier --check src",
-    "prettier-write": "prettier --write src",
+    "prepack": "npm run clean && npm run bundle",
     "dev:prettier-write": "prettier --write $(git diff --name-only --relative)",
-    "test": "npm run test-only && npm run eslint && npm run prettier && npm run check-types",
-    "test-only": "vitest run --coverage",
+    "test": "yarn g:test-only && yarn g:check-types && yarn g:eslint && yarn g:prettier",
     "tsc": "tsc --project tsconfig.types.json"
   },
-  "bugs": {
-    "url": "https://github.com/cheminfo/nmrium/issues/new?title=%5Bnmrium-core%5D"
-  },
-  "author": "",
-  "license": "CC-BY-NC-SA-4.0",
   "devDependencies": {
-    "@microsoft/api-extractor": "^7.52.1",
+    "@microsoft/api-extractor": "^7.52.7",
     "@types/lodash.merge": "^4.6.9",
-    "@types/node": "^22.13.11",
-    "@vitest/coverage-istanbul": "^3.0.9",
-    "esbuild": "^0.25.1",
-    "eslint": "^9.22.0",
-    "eslint-config-cheminfo-typescript": "^18.0.0",
+    "@types/node": "^22.15.16",
+    "esbuild": "^0.25.4",
     "jest-matcher-deep-close-to": "^3.0.2",
-    "prettier": "^3.5.3",
     "rimraf": "^6.0.1",
-    "typescript": "^5.8.2",
-    "vitest": "^3.0.9"
+    "vitest": "^3.1.3"
   },
   "dependencies": {
-    "brukerconverter": "^8.0.3",
+    "cheminfo-types": "^1.8.1",
     "fifo-logger": "^1.0.0",
     "filelist-utils": "^1.11.3",
     "is-any-array": "^2.0.1",
     "lodash.merge": "^4.6.2",
-    "ml-spectra-processing": "^14.11.0",
+    "ml-spectra-processing": "^14.12.0",
     "nmr-correlation": "^2.3.5",
-    "nmr-processing": "^18.0.1"
+    "nmr-processing": "^18.0.2"
   },
   "volta": {
     "extends": "../../../package.json"

package/dist/nmrium-core.cjs

@@ -1,4 +0,0 @@
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te=[{name:"pixels",unit:"px"},{name:"inches",unit:"in"},{name:"feet",unit:"ft"},{name:"yards",unit:"yd"},{name:"centimeters",unit:"cm"},{name:"millimeters",unit:"mm"},{name:"meters",unit:"m"},{name:"points",unit:"pt"},{name:"picas",unit:"pc"}];var P=9;var re=[{key:"CT",description:"CT from NMR Solutions"}];var ne=require("is-any-array"),v=require("ml-spectra-processing");var Ee=crypto.randomUUID.bind(crypto),b=Ee;function N(e){let{id:t=b(),meta:n,peaks:r={},filters:o=[],info:s={},ranges:u={},integrals:i={},selector:a,dependentVariables:c=[],...f}=e,l={id:t,meta:n,filters:o},{data:d=Ie(c[0].components)}=e;if(Array.isArray(s.nucleus)&&(s.nucleus=s.nucleus[0]),l.data={x:[],re:[],im:[],...d},"scaleFactor"in s){let{scaleFactor:p}=s,{re:g,im:y}=l.data;(0,v.xMultiply)(g,p,{output:g}),y&&(0,v.xMultiply)(y,p,{output:y})}a&&(l.selector=a);let 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i=r[o],{lineBroadening:a,gaussBroadening:c,lineBroadeningCenter:f}=i.value;i.value={exponential:{apply:!0,options:{lineBroadening:c>0?-a:a}}},c>0&&(i.value.gaussian={apply:!0,options:{lineBroadening:.6*c,lineBroadeningCenter:f}}),r[o]=i}let s=r.findIndex(i=>i.name==="apodizationDimension1"),u=r.findIndex(i=>i.name==="apodizationDimension2");if(s!==-1){let i=r[s],{shapes:a}=i.value.compose;i.value=ue(a)}if(u!==-1){let i=r[u],{shapes:a}=i.value.compose;i.value=ue(a)}}return t}function ue(e){let t={};for(let{shape:n}of e){let{kind:r,options:o}=n;if(r==="sineBell"){let{exponent:s,offset:u}=o,i=s===2?"sineSquare":"sineBell";t[i]={apply:!0,options:{offset:u}}}}return t}function $(e){let{version:t,plugins:n,...r}=e;return t===9?e:{version:9,plugins:{},...r}}var Ze=[_,U,K,W,X,Y,G,Z,$];function pe(e,t,n){let r=structuredClone(e),o=Object.entries(e?.plugins??{});for(let[i,{version:a}]of o){let c=n.get(i);if(!(c&&c.version>=a)){if(c){console.warn(`Plugin "${c.id}" is loaded with a version older (${c.version}) than the one used to save the state (${a}).
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