@zakodium/nmrium-core-plugins 0.1.7 → 0.1.8

package/dist/nmrium-core-plugins.d.ts

@@ -46,9 +46,9 @@ declare interface FilterTreeByDataTypeDataClass {
 }
 
 /**
- * Init NMRiumCore with recommended plugins.
+ * Init NMRiumCore with recommended plugins and plugins passed as argument.
  */
-declare function init(): NMRiumCore;
+declare function init(plugins?: NMRiumPlugin[]): NMRiumCore;
 export default init;
 export { init }
 

package/dist/nmrium-core-plugins.js

@@ -15,4 +15,4 @@ var Yr=Object.defineProperty;var Nt=(e,t)=>{for(var n in t)Yr(e,n,{get:t[n],enum
 `);for(let a of s){let l=a.replaceAll(/;.*/g,"").replaceAll("\r",""),c=a.match(";")?a.replaceAll(/.*;+(.*)/g,"$1"):"";if(l.length===0){o.headComment||(o.headComment=[]),o.headComment.push(c);continue}let u=ir(l,r);o.data.push({comment:c,value:u})}}return n}function ys(e){let t=ft(e),n=Number.parseFloat(t.molecules[0].NMREDATA_VERSION),i={};for(let r of t.labels)if(r.toLowerCase().match("nmredata")){if(!t.molecules[0]?.[r])continue;let o=r.replace(/NMREDATA_/,""),s=String(t.molecules[0][r]);s=n>1?s.replaceAll(/\n*/g,""):s,s=s.replaceAll(/\\\n*/g,`
 `),i[o]=s}return i}function ft(e,t={}){if(typeof e=="string"){let{filename:n="nmredata.sdf",root:i=""}=t;return{...Ne(e,{mixedEOL:!0}),root:i,filename:n}}return e}import{generateID as mr}from"@zakodium/nmrium-core";import{generateID as cr}from"@zakodium/nmrium-core";import{xyIntegration as hs}from"ml-spectra-processing";function lr(e,t){let{x:n,re:i}=t.data;return e.map(r=>{let o=hs({x:n,y:i},{from:r.from,to:r.to}),s=[];for(let a of r.signals||[]){let{kind:l=null,id:c,js:u=[],diaIDs:f=[],...d}=a;s.push({...d,kind:l||"signal",js:u,id:c||cr(),diaIDs:f})}return{...r,id:r.id||cr(),kind:s?.[0].kind||"signal",absolute:o,signals:s}})}function ur(e,t){let n=[],{baseFrequency:i=500}=t.info;for(let r of e){let{delta:o,diaIDs:s=[],multiplicity:a="",integration:l=0}=r,c=r.jCoupling||[],u=bs({delta:o,js:c,frequency:i});if(c&&a&&c.length===a.length){c.sort((f,d)=>d.coupling-f.coupling);for(let f=0;f<c.length;f++)c[f].multiplicity=a[f]}n.push({id:mr(),...u,integration:l,signals:[{id:mr(),js:c,delta:o,diaIDs:s,multiplicity:a}]})}t.ranges.values=lr(H(n),t)}function bs(e){let{delta:t,js:n=[],frequency:i}=e,r=.5;for(let o of n)r+=o.coupling;return r/=i,{from:t-r,to:t+r}}import{generateID as pr}from"@zakodium/nmrium-core";var Fs=["x","y"],Ds={x:0,y:0};function fr(e,t,n={}){let i=[],{shift:r=Ds}=n,{originFrequency:o=[400,400]}=t.info,s={x:o[0],y:o[1]};for(let a of e){let l={x:{},y:{},id:pr(),kind:"signal"},c={id:pr(),kind:"signal",peaks:[]},u={x:10,y:10};for(let f of Fs){let{coupling:d=[],delta:g,diaIDs:h=[]}=a[f];for(let p of d)u[f]+=p.coupling;if(a.activeCoupling){let{activeCoupling:p=[]}=a;for(let b of p)u[f]+=b.coupling}u[f]/=s[f],l[f]={from:g-u[f],to:g+u[f]},c[f]={delta:g,diaIDs:h,originalDelta:g-r[f]}}i.push({...l,signals:[c]})}t.zones.values=i}function dr(e){return xs(e.data)}function xs(e){return"rr"in e||!("x"in e)&&"re"in e}async function gr(e,t,n={}){let i={spectra:[],molecules:[]},r=await Ss(e,t,n);if(r.spectra.length>0){let{spectra:o,molecules:s,usedFiles:a}=r;i.spectra.push(...o),i.molecules.push(...s);let l=e.files.length;for(let c=l-1;c>=0;c--){let u=e.files[c].relativePath;!u.match(/acqu.*/s)&&a.includes(u)&&e.files.splice(c,1)}}return i}async function Ss(e,t,n){let i=[],r=await pt(e),o={spectra:[],molecules:[]};if(r.length===0)return{...o,usedFiles:i};let s=[];for(let l of r){let c=ar({sdf:l,fileCollection:e}).then(u=>{let{spectra:f,molecules:d=[]}=u;return i.push(l.root+l.filename),o.molecules.push(...d),Ps(f,t,n)});s.push(c)}let a=await Promise.allSettled(s);for(let l of a)l.status==="fulfilled"?(o.spectra.push(...l.value.spectra),i.push(...l.value.usedFiles)):l.reason&&n?.logger?.error(l.reason);return{...o,usedFiles:i}}async function Ps(e,t,n){let i=[],r=[],o={spectra:[],molecules:[]};for(let s of e){let a=Ns(s.source,t,n).then(l=>{let{spectra:c,files:u}=l;i.push(...u);for(let f of c)dr(f)?fr(s.signals,f):ur(s.signals,f);o.spectra.push(...c)});r.push(a)}return await Promise.allSettled(r),{...o,usedFiles:i}}async function Ns(e,t,n={}){let{file:i,jcampURL:r}=e,{converter:o}=n;if(r){let l=await As(r,t,o?.jcamp);if(l)return{...l,files:[]}}let s=[];for(let l of i||[])s.push(Ms(l,n).then(c=>({...c,files:l.fileCollection.files.map(u=>u.relativePath)})));let a=await Promise.allSettled(s);for(let l of a){if(l.status==="fulfilled")return l.value;l.reason&&n?.logger?.error(l.reason)}return{spectra:[],molecules:[],files:[]}}async function As(e,t,n={}){let i={entries:[{relativePath:e}]},r={name:X(e||""),xy:!0,noContours:!0,...n},{data:o}=await t.readFromWebSource(i,r);return o}async function Ms(e,t={}){let{converter:n,sourceSelector:i}=t;switch(e.type){case"jcamp":return Fe(e.fileCollection.files[0],{name:e?.fileCollection.files[0].name||"",converter:n?.jcamp,selector:i?.jcamp,logger:t.logger,keepSource:t.keepSource});case"brukerFiles":return ye(e.fileCollection,{converter:n?.bruker,selector:i});default:throw new Error("There is not a supported source")}}var Me=class{id="@zakodium/nmrium-core-plugins#NMReDATALoaderPlugin";version=1;migrations=[];onReadProcess;#e;constructor(t){this.#e=t,this.onReadProcess={onFiles:this.onReadProcessFiles}}onReadProcessFiles=(t,n)=>gr(t,this.#e,n)};function dt(e){return new Me(e)}import{parse as Is}from"sdf-parser";function yr(e,t={}){let{mixedEOL:n}=t,{molecules:i}=Is(e,{mixedEOL:n}),r=[];for(let{molfile:o}of i){let s=V(o);r.push(...s)}return r}async function hr(e,t={}){let{logger:n,mixedEOL:i}=t,r=await e.text(),o=yr(r,{mixedEOL:i}),s={molecules:o,spectra:[]};return n&&n[o.length>0?"info":"debug"](`Loaded ${s.molecules.length} molecules from the ${e.name} file`),s}var Ie=class{id="@zakodium/nmrium-core-plugins#SDFLoaderPlugin";version=1;migrations=[];onReadProcess;constructor(){this.onReadProcess={supportedExtensions:["sdf"],onFile:this.onReadProcessFile.bind(this)}}onReadProcessFile(t,n={}){let{logger:i}=n;return i?.debug(`Reading sdf file: ${t.name}`),hr(t,{logger:i})}};function gt(){return new Ie}import{Molecule as Rs}from"openchemlib";function br(e){let t=[],n=e.split(/\r?\n/).filter(Boolean);for(let i of n){let o=Rs.fromSmiles(i).toMolfile();t.push({molfile:o})}return t}async function Fr(e,t={}){let n=await e.text(),i=br(n),r={molecules:i,spectra:[]};return t.logger?.info(`Found ${i.length} molecules from the ${e.name} file`),r}var Re=class{id="@zakodium/nmrium-core-plugins#SMILESLoaderPlugin";version=1;migrations=[];onReadProcess;constructor(){this.onReadProcess={supportedExtensions:["smi","smiles"],onFile:this.onReadProcessFile.bind(this)}}onReadProcessFile(t,n={}){let{logger:i}=n;return Fr(t,{logger:i})}};function yt(){return new 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l of s)if(l.name==="at"){a=l.values[0];break}if(typeof a!="number")throw new Error("acquisition time parameter must exist and be a number.");{let l=Ts({from:0,to:a,length:o.np/2,distribution:"uniform"}),c=new ke(r,o);return{meta:o,fid:c,procpar:s,x:l}}}import{isAnyArray as vs}from"is-any-array";import{xMultiply as ks}from"ml-spectra-processing";import{normalizeNucleus as Os}from"nmr-processing";function Pr(e,t){let{meta:n,procpar:i}=e,r={};for(let y of i)r[y.name]=y.values;let o={},s={},{np:a,solvent:l,sfrq:c,reffrq:u,temp:f,rp:d,sw:g,rfl:h,rfp:p}=r;S(o,"numberOfPoints",a&&Number(L(a))/2),S(o,"solvent",L(l)),S(o,"originFrequency",L(c)),S(o,"baseFrequency",L(u)),(Number.isNaN(o.originFrequency)||o.originFrequency===0)&&(o.originFrequency=400,t?.warn("The frequency could not be determined and was set to 400MHz")),S(o,"temperature",L(f)),S(o,"phc0",d&&Number(d[0])),S(s,"rfl",h&&Number(L(h))),S(s,"rfp",p&&Number(L(p))),S(s,"sw",g&&Number(L(g)));for(let y in s){let 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r=i.name.toLowerCase();if(r.match(/^(?:fid|procpar|text|log)$/)){if(r.match(/^(?:fid|text|log)$/)){let a=i.relativePath.replace(/(?:fid|text|log)$/,"procpar");if(!n.has(a))continue}let o=i.relativePath.split("/"),s=o.slice(0,-1).join("/");t[s]||(t[s]={name:o.at(-2),files:[]}),t[s].files.push(i)}}return Object.values(t)}async function Mr(e,t={}){let{keepSource:n,logger:i}=t,r=Ar(e);i&&i.debug(`Found ${Object.keys(r).length} varian experiments`);let o=[],s={spectra:[],molecules:[]};for(let l of r){let{name:c,files:u}=l,f=Sr(u).then(d=>{let{info:g,meta:h}=Pr(d),p=d.fid.data[0],b=vs(p.im),m={data:{...p,x:d.x},meta:h,info:{isComplex:b,name:c,...g},display:{name:c}};if(g.isFid&&b){let{im:y}=m.data;ks(y,-1,{output:y})}u&&n&&(m.sourceSelector={files:u.map(y=>y.relativePath)}),s.spectra.push(m)});o.push(f)}let a=await Promise.allSettled(o);for(let l=0;l<a.length;l++){let c=a[l];if(c.status==="rejected"&&c.reason){let u=r[l].name;i?.warn(`Varian data: ${u}, fails with: ${c.reason}`)}}return s.spectra.length>0&&i?.info(`Loaded ${s.spectra.length}  spectra from Varian files`),ws(s)}var qe=class{id="@zakodium/nmrium-core-plugins#VarianLoaderPlugin";version=1;migrations=[];onReadProcess;constructor(){this.onReadProcess={onFiles:this.onReadProcessFiles}}onReadProcessFiles=(t,n)=>{let{keepSource:i,logger:r}=n??{};return Mr(t,{keepSource:i,logger:r})}};function Ft(){return new qe}function qs(e,t=[]){return[dt(e),Ft(),Ze(),nt(),mt(),gt(),yt(),lt(),Je()].concat(t)}function _s(){let e=new Ls;return e.registerPlugins(qs(e)),e}import{getOneIfArray as Rr}from"@zakodium/nmrium-core";import{from1DNMRVariables as js}from"convert-to-jcamp";function Ir(e,t){return e.filters.find(n=>n.name===t)}function Bs(e,t={}){let{info:n,meta:i,data:r}=e,{onlyReal:o=!1}=t,{isFid:s,spectralWidth:a}=n,l=Rr(n.baseFrequency||n.originFrequency),{x:c,re:u,im:f}=r,d=new Float64Array(u),g=!o&&f?new Float64Array(f):void 0,h={};Q(h,"SW",a),Q(h,"BF1",l);let p=Ir(e,"fft")?.enabled,b={originFrequency:n.originFrequency,dataType:!n.isFid||p?"NMR SPECTRUM":"NMR FID",dataClass:!o&&f?"NTUPLES":"XYDATA"};if(s){let F=e.filters.find(x=>x.name==="digitalFilter");if(F&&!p){let{value:{digitalFilterValue:x},enabled:N}=F;if(N){let D=Math.floor(x);d.set(u.slice(u.length-D)),d.set(u.slice(0,u.length-D),D),f&&g&&(g.set(f.slice(f.length-D)),g.set(f.slice(0,f.length-D),D))}}Q(b,"decim",n.decim),Q(b,"dspfvs",n.dspfvs),Q(b,"digitalFilter",n.digitalFilter)}let m={xyEncoding:"DIFDUP",info:{...n,...b},meta:{...i,...h}},y={x:{data:c,label:n.isFid?"TIME":"FREQUENCY",units:n.isFid?"second":"HZ",symbol:"X"},r:{data:d,label:`${n.isFid?"FID":"SPECTRUM"}/REAL`,units:"ARBITRARY UNITS",symbol:"R"}};return g&&(y.i={data:g,label:`${n.isFid?"FID":"SPECTRUM"}/IMAG`,units:"ARBITRARY UNITS",symbol:"I"}),js(y,m)}function Q(e,t,n){n!==void 0&&(e[t]=Rr(n))}export{ne as AutoPostProcessingPlugin,he as BrukerLoaderPlugin,De as JCAMPDXLoaderPlugin,Se as JEOLLoaderPlugin,Pe as MolfileLoaderPlugin,Me as NMReDATALoaderPlugin,Ie as SDFLoaderPlugin,Re as SMILESLoaderPlugin,qe as VarianLoaderPlugin,Je as autoPostProcessing,Ze as brukerLoader,_s as default,_s as init,nt as jcampDXLoader,lt as jeolLoader,mt as molfileLoader,dt as nmreDATALoader,Nn as processJCAMPDX,yr as readSDF,br as readSMILES,qs as recommended,gt as sdfLoader,yt as smilesLoader,Bs as spectrum1DToJCAMPDX,Ft as varianLoader};
+`,index:r=0}=n;this.eol=i,this.index=r,this.lines=t.split(this.eol),this.length=this.lines.length}readLine(){if(this.index>=this.length)throw new Error(`Last index is ${this.length-1}. Current index ${this.index}.`);return this.lines[this.index++]}readLines(t){let n=this.lines.slice(this.index,this.index+t);return this.index+=t,n}},we=class{softwareVersion;typeOfFile;vendorIdStatus;constructor(t){this.softwareVersion=t&2**6-1,this.typeOfFile={fidFile:(t&64)!==0,dataFile:(t&128)!==0,data3DFile:(t&256)!==0},this.vendorIdStatus={isVar:(t&0)!==0,isQOne:(t&2048)!==0,isMakeFid:(t&4096)!==0,isJeol:(t&8192)!==0,isBru:(t&16384)!==0,isMag:(t&6144)!==0,isOx:(t&10240)!==0,ipVers:(t&63)!==0,ipFileId:(t&1984)!==0,ipVendorId:(t&30720)!==0}}},ve=class{npPhMode;npAvMode;npPwrMode;nfPhMode;nfAvMode;nfPwrMode;niPhMode;niAvMode;niPwrMode;ni2PhMode;ni2AvMode;ni2PwrMode;niPaMode;ni2PaMode;constructor(t){this.npPhMode=(t&1)!==0,this.npAvMode=(t&2)!==0,this.npPwrMode=(t&4)!==0,this.nfPhMode=(t&16)!==0,this.nfAvMode=(t&32)!==0,this.nfPwrMode=(t&64)!==0,this.niPhMode=(t&256)!==0,this.niAvMode=(t&512)!==0,this.niPwrMode=(t&1024)!==0,this.ni2PhMode=(t&8)!==0,this.ni2AvMode=(t&256)!==0,this.ni2PwrMode=(t&8192)!==0,this.niPaMode=(t&16384)!==0,this.ni2PaMode=(t&32768)!==0}};var ke=class{scale;status;index;mode;ctCount;lpVal;rpVal;lvl;tlt;data;constructor(t,n,i){i&&(t.offset=i),this.scale=t.readInt16(),this.status=new Te(t.readInt16()),this.index=t.readInt16(),this.mode=new ve(t.readInt16()),this.ctCount=t.readInt32(),this.lpVal=t.readFloat32(),this.rpVal=t.readFloat32(),this.lvl=t.readFloat32(),this.tlt=t.readFloat32(),this.data=Es(t,n)}};function Es(e,t){let{np:n,nTraces:i,status:{isFloat32:r,isInt32:o}}=t;return r?ht(e,i,n,"readFloat32"):o?ht(e,i,n,"readInt32"):ht(e,i,n,"readInt16")}function ht(e,t,n,i){let r=[],o;i==="readFloat32"?o={re:new Float32Array(n/2),im:new Float32Array(n/2)}:i==="readInt32"?o={re:new Int32Array(n/2),im:new Int32Array(n/2)}:o={re:new Int16Array(n/2),im:new Int16Array(n/2)};for(let s=0;s<t;s++){for(let a=0;a<n;a+=2)o.re[a>>>1]=e[i](),o.im[a>>>1]=e[i]();r[s]=o}return r}var Le=class{nBlocks;nTraces;np;eBytes;tBytes;bBytes;version;status;nBlockHeaders;constructor(t){t.offset=0,this.nBlocks=t.readInt32(),this.nTraces=t.readInt32(),this.np=t.readInt32(),this.eBytes=t.readInt32(),this.tBytes=t.readInt32(),this.bBytes=t.readInt32(),this.version=new we(t.readInt16()),this.status=new Oe(t.readInt16()),this.nBlockHeaders=t.readInt32()}};var bt=class{name;subType;basicType;maxValue;minValue;stepSize;gGroup;dGroup;protection;active;intptr;constructor(t){let n=t.split(" ");this.name=n[0],this.subType=Number.parseInt(n[1],10),this.basicType=Number.parseInt(n[2],10),this.maxValue=Number.parseFloat(n[3]),this.minValue=Number.parseFloat(n[4]),this.stepSize=Number.parseFloat(n[5]),this.gGroup=Number.parseInt(n[6],10),this.dGroup=Number.parseInt(n[7],10),this.protection=Number.parseInt(n[8],10),this.active=Number.parseInt(n[9],10),this.intptr=Number.parseInt(n[10],10)}};function xr(e){let t=[],n=new Ce(e.readChars(e.length));for(;n.index<n.length-1;){let i=[],r=[],o=new bt(n.readLine()),s=n.readLine();if(o.basicType!==0){if(o.basicType===1)i=s.split(" ").slice(1).map(u=>Number.parseFloat(u));else if(o.basicType===2){i=s.split('"').slice(1,2);let c=Number.parseInt(s.split(" ")[0],10);for(;c>1;)i.push(n.readLine().split('"')[1]),c--}}let a=n.readLine(),l=Number.parseInt(a.split(" ")[0],10);l!==0&&(o.basicType===1?r=a.split(" ").slice(1):o.basicType===2&&(r=a.split('"').filter((c,u)=>u%2===1))),t.push({...o,values:i,enumerable:l,enumerables:r})}return t}async function Sr(e){let t={};function n(l,c){return l.then(u=>{t[c]=u})}let i=[];for(let l of e)switch(l.name.toLowerCase()){case"fid":{i.push(n(l.arrayBuffer(),"fidB"));break}case"procpar":{i.push(n(l.arrayBuffer(),"procparB"));break}default:break}if(await Promise.all(i),!t.fidB||!t.procparB)throw new RangeError("fid and procpar must exist.");let r=new O(t.fidB);Dr(r);let o=new Le(r);if(o.nBlocks!==1)throw new Error("We currently do not support 2D varian spectra ");let s=xr(new O(t.procparB)),a;for(let l of s)if(l.name==="at"){a=l.values[0];break}if(typeof a!="number")throw new Error("acquisition time parameter must exist and be a number.");{let l=Ts({from:0,to:a,length:o.np/2,distribution:"uniform"}),c=new ke(r,o);return{meta:o,fid:c,procpar:s,x:l}}}import{isAnyArray as vs}from"is-any-array";import{xMultiply as ks}from"ml-spectra-processing";import{normalizeNucleus as Os}from"nmr-processing";function Pr(e,t){let{meta:n,procpar:i}=e,r={};for(let y of i)r[y.name]=y.values;let o={},s={},{np:a,solvent:l,sfrq:c,reffrq:u,temp:f,rp:d,sw:g,rfl:h,rfp:p}=r;S(o,"numberOfPoints",a&&Number(L(a))/2),S(o,"solvent",L(l)),S(o,"originFrequency",L(c)),S(o,"baseFrequency",L(u)),(Number.isNaN(o.originFrequency)||o.originFrequency===0)&&(o.originFrequency=400,t?.warn("The frequency could not be determined and was set to 400MHz")),S(o,"temperature",L(f)),S(o,"phc0",d&&Number(d[0])),S(s,"rfl",h&&Number(L(h))),S(s,"rfp",p&&Number(L(p))),S(s,"sw",g&&Number(L(g)));for(let y in s){let F=s[y];Array.isArray(F)&&F.length===1&&(s[y]=F[0])}if(!("baseFrequency"in o)&&"originFrequency"in o){let y=Number.parseFloat(o.originFrequency);if(["sw","rfl","rfp"].every(F=>F in s)){let{sw:F=1,rfl:x=1,rfp:N=1}=Cs(s,["sw","rfl","rfp"]);S(o,"baseFrequency",y-(F/2-x+N)/1e6)}else S(o,"baseFrequency",y)}let{baseFrequency:b,originFrequency:m}=o;S(o,"frequencyOffset",(m-b)*1e6),S(o,"spectralWidth",g&&Number(g[0])/o.baseFrequency);for(let y in o)o[y].length===1&&(o[y]=o[y][0]);return r.tn&&(o.nucleus=r.tn.map(Os)),o.dimension=1,o.isFid=!n.status.isSpectrum,{info:o,meta:{...s,...Nr(n),...r}}}function L(e){return e&&(Array.isArray(e)?e[0]:e)}function Cs(e,t){let n={};for(let i of t){let r=e[i];r&&typeof r=="number"&&(n[i]=r)}return n}function Nr(e){let t={};for(let n of Object.keys(e)){let i=e[n];typeof i=="object"&&i!==null&&i.constructor&&i.constructor!==Object?t[n]=Nr(i):t[n]=i}return t}function Ar(e){let t={},n=new Set(e.files.map(i=>i.relativePath));for(let i of e){let r=i.name.toLowerCase();if(r.match(/^(?:fid|procpar|text|log)$/)){if(r.match(/^(?:fid|text|log)$/)){let a=i.relativePath.replace(/(?:fid|text|log)$/,"procpar");if(!n.has(a))continue}let o=i.relativePath.split("/"),s=o.slice(0,-1).join("/");t[s]||(t[s]={name:o.at(-2),files:[]}),t[s].files.push(i)}}return Object.values(t)}async function Mr(e,t={}){let{keepSource:n,logger:i}=t,r=Ar(e);i&&i.debug(`Found ${Object.keys(r).length} varian experiments`);let o=[],s={spectra:[],molecules:[]};for(let l of r){let{name:c,files:u}=l,f=Sr(u).then(d=>{let{info:g,meta:h}=Pr(d),p=d.fid.data[0],b=vs(p.im),m={data:{...p,x:d.x},meta:h,info:{isComplex:b,name:c,...g},display:{name:c}};if(g.isFid&&b){let{im:y}=m.data;ks(y,-1,{output:y})}u&&n&&(m.sourceSelector={files:u.map(y=>y.relativePath)}),s.spectra.push(m)});o.push(f)}let a=await Promise.allSettled(o);for(let l=0;l<a.length;l++){let c=a[l];if(c.status==="rejected"&&c.reason){let u=r[l].name;i?.warn(`Varian data: ${u}, fails with: ${c.reason}`)}}return s.spectra.length>0&&i?.info(`Loaded ${s.spectra.length}  spectra from Varian files`),ws(s)}var qe=class{id="@zakodium/nmrium-core-plugins#VarianLoaderPlugin";version=1;migrations=[];onReadProcess;constructor(){this.onReadProcess={onFiles:this.onReadProcessFiles}}onReadProcessFiles=(t,n)=>{let{keepSource:i,logger:r}=n??{};return Mr(t,{keepSource:i,logger:r})}};function Ft(){return new qe}function qs(e,t=[]){return[dt(e),Ft(),Ze(),nt(),mt(),gt(),yt(),lt(),Je()].concat(t)}function _s(e=[]){let t=new Ls;return t.registerPlugins(qs(t,e)),t}import{getOneIfArray as Rr}from"@zakodium/nmrium-core";import{from1DNMRVariables as js}from"convert-to-jcamp";function Ir(e,t){return e.filters.find(n=>n.name===t)}function Bs(e,t={}){let{info:n,meta:i,data:r}=e,{onlyReal:o=!1}=t,{isFid:s,spectralWidth:a}=n,l=Rr(n.baseFrequency||n.originFrequency),{x:c,re:u,im:f}=r,d=new Float64Array(u),g=!o&&f?new Float64Array(f):void 0,h={};Q(h,"SW",a),Q(h,"BF1",l);let p=Ir(e,"fft")?.enabled,b={originFrequency:n.originFrequency,dataType:!n.isFid||p?"NMR SPECTRUM":"NMR FID",dataClass:!o&&f?"NTUPLES":"XYDATA"};if(s){let F=e.filters.find(x=>x.name==="digitalFilter");if(F&&!p){let{value:{digitalFilterValue:x},enabled:N}=F;if(N){let D=Math.floor(x);d.set(u.slice(u.length-D)),d.set(u.slice(0,u.length-D),D),f&&g&&(g.set(f.slice(f.length-D)),g.set(f.slice(0,f.length-D),D))}}Q(b,"decim",n.decim),Q(b,"dspfvs",n.dspfvs),Q(b,"digitalFilter",n.digitalFilter)}let m={xyEncoding:"DIFDUP",info:{...n,...b},meta:{...i,...h}},y={x:{data:c,label:n.isFid?"TIME":"FREQUENCY",units:n.isFid?"second":"HZ",symbol:"X"},r:{data:d,label:`${n.isFid?"FID":"SPECTRUM"}/REAL`,units:"ARBITRARY UNITS",symbol:"R"}};return g&&(y.i={data:g,label:`${n.isFid?"FID":"SPECTRUM"}/IMAG`,units:"ARBITRARY UNITS",symbol:"I"}),js(y,m)}function Q(e,t,n){n!==void 0&&(e[t]=Rr(n))}export{ne as AutoPostProcessingPlugin,he as BrukerLoaderPlugin,De as JCAMPDXLoaderPlugin,Se as JEOLLoaderPlugin,Pe as MolfileLoaderPlugin,Me as NMReDATALoaderPlugin,Ie as SDFLoaderPlugin,Re as SMILESLoaderPlugin,qe as VarianLoaderPlugin,Je as autoPostProcessing,Ze as brukerLoader,_s as default,_s as init,nt as jcampDXLoader,lt as jeolLoader,mt as molfileLoader,dt as nmreDATALoader,Nn as processJCAMPDX,yr as readSDF,br as readSMILES,qs as recommended,gt as sdfLoader,yt as smilesLoader,Bs as spectrum1DToJCAMPDX,Ft as varianLoader};

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@zakodium/nmrium-core-plugins",
-  "version": "0.1.7",
+  "version": "0.1.8",
   "description": "Recommended plugins for NMRium, loaders of common formats like bruker or jcamp, and some post-processing plugins",
   "author": "Zakodium Sàrl",
   "license": "CC-BY-NC-SA-4.0",
@@ -45,10 +45,10 @@
     "vitest": "^3.2.4"
   },
   "dependencies": {
-    "@zakodium/nmrium-core": "^0.1.4",
+    "@zakodium/nmrium-core": "^0.1.5",
     "cheminfo-types": "^1.8.1",
     "convert-to-jcamp": "^5.4.11",
-    "file-collection": "^5.0.0",
+    "file-collection": "^5.1.0",
     "gyromagnetic-ratio": "^2.0.0",
     "is-any-array": "^2.0.1",
     "jcampconverter": "^11.0.4",