@yu_robotics/remote-cli 1.6.137 → 1.6.141

package/dist/delegation/GitCheckpoint.d.ts

@@ -1,6 +1,4 @@
 export declare const CHECKPOINT_LIMITS: {
-    readonly files: 10000;
-    readonly bytes: number;
     readonly commandMs: 15000;
     readonly outputBytes: number;
 };
@@ -10,6 +8,12 @@ export interface GitCheckpoint {
     tree: string;
     commit: string;
     revision: string;
+    repositories?: NestedRepositoryCheckpoint[];
+}
+export interface NestedRepositoryCheckpoint {
+    path: string;
+    identity: string;
+    revision: string;
 }
 export declare class GitCommandError extends Error {
     readonly command: string;
@@ -20,8 +24,10 @@ export declare class GitCommandError extends Error {
 /** Fixed argv only; neither a shell nor the user's Git environment selects the repository. */
 export declare function runGit(cwd: string, args: string[], input?: Buffer | string, extraEnv?: Record<string, string>): Promise<Buffer>;
 export declare function gitText(cwd: string, args: string[], input?: Buffer | string, env?: Record<string, string>): Promise<string>;
-export declare function checkpointRevision(head: string, tree: string, index: Buffer): string;
+export declare function checkpointRevision(head: string, tree: string, index: Buffer, repositories?: NestedRepositoryCheckpoint[]): string;
+/** Transfer local objects through a pipe, without buffering repository contents or fetching a remote. */
+export declare function importGitTree(source: string, destination: string, tree: string): Promise<void>;
 export declare function createCheckpointCommit(root: string, tree: string, parent: string, label: string): Promise<string>;
-/** Captures working files, including staged/unstaged/untracked input, without writing the user's index. */
+/** Flatten nested working files in private trees; never alter any source HEAD or index. */
 export declare function captureCheckpoint(root: string): Promise<GitCheckpoint>;
 //# sourceMappingURL=GitCheckpoint.d.ts.map

package/dist/delegation/GitCheckpoint.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"GitCheckpoint.d.ts","sourceRoot":"","sources":["../../src/delegation/GitCheckpoint.ts"],"names":[],"mappings":"AAMA,eAAO,MAAM,iBAAiB;;;CAAgE,CAAC;AAC/F,eAAO,MAAM,OAAO,QAAoC,CAAC;AAEzD,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,CAAC;IACjB,YAAY,CAAC,EAAE,0BAA0B,EAAE,CAAC;CAC7C;AAED,MAAM,WAAW,0BAA0B;IACzC,IAAI,EAAE,MAAM,CAAC;IACb,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;CAClB;AAED,qBAAa,eAAgB,SAAQ,KAAK;IAC5B,QAAQ,CAAC,OAAO,EAAE,MAAM;IAAE,QAAQ,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI;IAAE,QAAQ,CAAC,MAAM,EAAE,MAAM;gBAAtE,OAAO,EAAE,MAAM,EAAW,IAAI,EAAE,MAAM,GAAG,IAAI,EAAW,MAAM,EAAE,MAAM;CAG5F;AAYD,8FAA8F;AAC9F,wBAAsB,MAAM,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,MAAM,EAC/E,QAAQ,GAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAgCxD;AAED,wBAAsB,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,MAAM,EAChF,GAAG,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GAAG,OAAO,CAAC,MAAM,CAAC,CAE/C;AAED,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAC1E,YAAY,GAAE,0BAA0B,EAAO,GAAG,MAAM,CAIzD;AAED,yGAAyG;AACzG,wBAAsB,aAAa,CAAC,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CA6BpG;AAwMD,wBAAsB,sBAAsB,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAQvH;AAmFD,2FAA2F;AAC3F,wBAAsB,iBAAiB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,aAAa,CAAC,CAiB5E"}

package/dist/delegation/GitCheckpoint.js

@@ -7,6 +7,7 @@ exports.GitCommandError = exports.GIT_OID = exports.CHECKPOINT_LIMITS = void 0;
 exports.runGit = runGit;
 exports.gitText = gitText;
 exports.checkpointRevision = checkpointRevision;
+exports.importGitTree = importGitTree;
 exports.createCheckpointCommit = createCheckpointCommit;
 exports.captureCheckpoint = captureCheckpoint;
 const child_process_1 = require("child_process");
@@ -14,8 +15,7 @@ const crypto_1 = require("crypto");
 const promises_1 = __importDefault(require("fs/promises"));
 const os_1 = __importDefault(require("os"));
 const path_1 = __importDefault(require("path"));
-exports.CHECKPOINT_LIMITS = { files: 10_000, bytes: 128 * 1024 * 1024,
-    commandMs: 15_000, outputBytes: 32 * 1024 * 1024 };
+exports.CHECKPOINT_LIMITS = { commandMs: 15_000, outputBytes: 32 * 1024 * 1024 };
 exports.GIT_OID = /^(?:[a-f0-9]{40}|[a-f0-9]{64})$/;
 class GitCommandError extends Error {
     command;
@@ -29,13 +29,19 @@ class GitCommandError extends Error {
     }
 }
 exports.GitCommandError = GitCommandError;
+function gitEnvironment(extra = {}) {
+    const inherited = Object.fromEntries(Object.entries(process.env).filter(([name]) => !name.startsWith('GIT_')));
+    return { ...inherited, LC_ALL: 'C', ...extra };
+}
+function gitArguments(args) {
+    return ['-c', 'core.hooksPath=' + (process.platform === 'win32' ? 'NUL' : '/dev/null'),
+        '-c', 'core.fsmonitor=false', '-c', 'gc.auto=0', '-c', 'maintenance.auto=false', ...args];
+}
 /** Fixed argv only; neither a shell nor the user's Git environment selects the repository. */
 async function runGit(cwd, args, input, extraEnv = {}) {
-    const env = Object.fromEntries(Object.entries(process.env).filter(([name]) => !name.startsWith('GIT_')));
     return new Promise((resolve, reject) => {
-        const child = (0, child_process_1.spawn)('git', ['-c', 'core.hooksPath=' + (process.platform === 'win32' ? 'NUL' : '/dev/null'),
-            '-c', 'core.fsmonitor=false', '-c', 'gc.auto=0', '-c', 'maintenance.auto=false', ...args], {
-            cwd, env: { ...env, LC_ALL: 'C', ...extraEnv }, stdio: ['pipe', 'pipe', 'pipe'],
+        const child = (0, child_process_1.spawn)('git', gitArguments(args), {
+            cwd, env: gitEnvironment(extraEnv), stdio: ['pipe', 'pipe', 'pipe'],
         });
         const chunks = [];
         let size = 0;
@@ -74,19 +80,98 @@ async function runGit(cwd, args, input, extraEnv = {}) {
 async function gitText(cwd, args, input, env) {
     return (await runGit(cwd, args, input, env)).toString('utf8').trim();
 }
-function checkpointRevision(head, tree, index) {
-    return (0, crypto_1.createHash)('sha256').update(head).update('\0').update(tree).update('\0').update(index).digest('hex');
+function checkpointRevision(head, tree, index, repositories = []) {
+    const hash = (0, crypto_1.createHash)('sha256').update(head).update('\0').update(tree).update('\0').update(index);
+    if (repositories.length)
+        hash.update('\0repositories\0').update(JSON.stringify(repositories));
+    return hash.digest('hex');
+}
+/** Transfer local objects through a pipe, without buffering repository contents or fetching a remote. */
+async function importGitTree(source, destination, tree) {
+    if (!exports.GIT_OID.test(tree))
+        throw new Error('Invalid nested checkpoint tree');
+    if (await gitText(source, ['rev-parse', '--show-object-format']) !== await gitText(destination, ['rev-parse', '--show-object-format'])) {
+        throw new Error('Nested repository uses a different Git object format');
+    }
+    const objects = await promises_1.default.realpath(path_1.default.resolve(destination, await gitText(destination, ['rev-parse', '--git-path', 'objects'])));
+    const incoming = await promises_1.default.mkdtemp(path_1.default.join(objects, 'tmp_objdir-incoming-'));
+    try {
+        await promises_1.default.mkdir(path_1.default.join(incoming, 'pack'));
+        const published = path_1.default.join(objects, 'pack');
+        await promises_1.default.mkdir(published, { recursive: true });
+        await transferGitTree(source, destination, tree, {
+            GIT_OBJECT_DIRECTORY: incoming,
+            GIT_ALTERNATE_OBJECT_DIRECTORIES: JSON.stringify(objects),
+        });
+        const files = await promises_1.default.readdir(path_1.default.join(incoming, 'pack'));
+        if (!files.some(file => file.endsWith('.pack')) || !files.some(file => file.endsWith('.idx'))
+            || files.some(file => !/^pack-(?:[a-f0-9]{40}|[a-f0-9]{64})\.(?:pack|idx|rev)$/.test(file))) {
+            throw new Error('Nested Git transfer produced an incomplete pack');
+        }
+        // Only complete packs leave quarantine. Publish indexes last so Git never
+        // discovers a pack while its bytes are still being received or promoted.
+        files.sort((left, right) => Number(left.endsWith('.idx')) - Number(right.endsWith('.idx')));
+        for (const file of files)
+            await promises_1.default.rename(path_1.default.join(incoming, 'pack', file), path_1.default.join(published, file));
+    }
+    finally {
+        // transferGitTree settles only after both children exit. Remove only this
+        // operation's quarantine, never sweep another process's temporary packs.
+        await promises_1.default.rm(incoming, { recursive: true, force: true });
+    }
+}
+async function transferGitTree(source, destination, tree, receiveEnv) {
+    await new Promise((resolve, reject) => {
+        const pack = (0, child_process_1.spawn)('git', gitArguments(['pack-objects', '--compression=1', '--window=0', '--threads=1', '--stdout', '--revs']), {
+            cwd: source, env: gitEnvironment(), stdio: ['pipe', 'pipe', 'pipe'],
+        });
+        const unpack = (0, child_process_1.spawn)('git', gitArguments(['index-pack', '--threads=1', '--stdin']), {
+            cwd: destination, env: gitEnvironment(receiveEnv), stdio: ['pipe', 'pipe', 'pipe'],
+        });
+        let closed = 0;
+        let failure;
+        let killTimer;
+        const stop = (error) => {
+            failure ??= error;
+            pack.kill('SIGTERM');
+            unpack.kill('SIGTERM');
+            killTimer ??= setTimeout(() => { pack.kill('SIGKILL'); unpack.kill('SIGKILL'); }, 500);
+        };
+        const timer = setTimeout(() => stop(new Error('Nested Git object transfer timed out')), exports.CHECKPOINT_LIMITS.commandMs);
+        for (const [name, child] of [['pack-objects', pack], ['index-pack', unpack]]) {
+            let detail = '';
+            child.stderr.on('data', (chunk) => { detail = (detail + chunk.toString('utf8')).slice(-2000); });
+            child.on('error', stop);
+            child.stdin.on('error', () => { });
+            child.on('close', code => {
+                if (code !== 0)
+                    stop(new GitCommandError(name, code, detail.trim()));
+                if (++closed === 2) {
+                    clearTimeout(timer);
+                    clearTimeout(killTimer);
+                    if (failure)
+                        reject(failure);
+                    else
+                        resolve();
+                }
+            });
+        }
+        unpack.stdout.resume();
+        pack.stdout.pipe(unpack.stdin);
+        pack.stdin.end(`${tree}\n`);
+    });
 }
 async function readIndex(root) {
     const file = path_1.default.resolve(root, await gitText(root, ['rev-parse', '--git-path', 'index']));
     try {
-        if ((await promises_1.default.stat(file)).size > exports.CHECKPOINT_LIMITS.outputBytes)
+        const stat = await promises_1.default.stat(file);
+        if (stat.size > exports.CHECKPOINT_LIMITS.outputBytes)
             throw new Error('Git index exceeds the checkpoint limit');
-        return await promises_1.default.readFile(file);
+        return { bytes: await promises_1.default.readFile(file), mtime: stat.mtime };
     }
     catch (error) {
         if (error.code === 'ENOENT')
-            return Buffer.alloc(0);
+            return { bytes: Buffer.alloc(0) };
         throw error;
     }
 }
@@ -104,45 +189,118 @@ function sensitiveUntracked(file) {
         || /^\.env(?:\.|$)/.test(name) && !/^\.env\.(?:example|sample|template)$/.test(name)
         || /\.(?:pem|key|p12|pfx)$/.test(name);
 }
-async function boundFiles(root) {
-    const untracked = entries(await runGit(root, ['ls-files', '-z', '--others', '--exclude-standard']));
-    if (untracked.some(sensitiveUntracked)) {
-        throw new Error('Untracked credential/config files prevent a safe checkpoint. Exclude them with Git ignore rules before delegating.');
+function relativeName(scope, root, file) {
+    return path_1.default.relative(scope, path_1.default.join(root, file)).split(path_1.default.sep).join('/');
+}
+function within(directory, target) {
+    const relative = path_1.default.relative(directory, target);
+    return !path_1.default.isAbsolute(relative) && relative !== '..' && !relative.startsWith(`..${path_1.default.sep}`);
+}
+async function nestedGitDirectory(root, scope, ancestors) {
+    const metadata = await promises_1.default.lstat(path_1.default.join(root, '.git'));
+    const name = JSON.stringify(path_1.default.relative(scope, root).split(path_1.default.sep).join('/'));
+    if (metadata.isSymbolicLink() || !metadata.isFile() && !metadata.isDirectory()) {
+        throw new Error(`Unsupported nested Git metadata at ${name}`);
+    }
+    const gitDirectory = await promises_1.default.realpath(await gitText(root, ['rev-parse', '--absolute-git-dir']));
+    const common = await promises_1.default.realpath(path_1.default.resolve(root, await gitText(root, ['rev-parse', '--git-common-dir'])));
+    if (ancestors.includes(common))
+        throw new Error(`Nested worktree shares an ancestor repository at ${name}; exclude it before delegating`);
+    const embedded = metadata.isDirectory() && gitDirectory === await promises_1.default.realpath(path_1.default.join(root, '.git'));
+    const submodule = metadata.isFile() && ancestors.some(parent => within(path_1.default.join(parent, 'modules'), gitDirectory));
+    if ((!embedded && !submodule) || common !== gitDirectory) {
+        throw new Error(`Nested Git metadata is outside the permitted repository boundary at ${name}; manual recovery is required`);
+    }
+    if (await promises_1.default.realpath(await gitText(root, ['rev-parse', '--show-toplevel'])) !== root) {
+        throw new Error(`Nested Git repository root does not match ${name}`);
+    }
+    return gitDirectory;
+}
+async function validateNestedConfig(root) {
+    try {
+        const configured = await gitText(root, ['config', '--show-scope', '--name-only', '--get-regexp',
+            '^(filter\\..*\\.(clean|smudge|process)|extensions\\.partialclone|remote\\..*\\.promisor)$']);
+        // Global filters are already trusted by the selected outer repository. Do
+        // not discover and execute additional commands from nested-local config.
+        if (configured.split('\n').some(line => /^(local|worktree)\s/.test(line) || /\s(?:extensions\.partialclone|remote\..*\.promisor)$/.test(line))) {
+            throw new Error('Nested repository filters or partial-clone configuration require manual recovery');
+        }
+    }
+    catch (error) {
+        if (!(error instanceof GitCommandError && error.code === 1))
+            throw error;
+    }
+}
+async function validateFiles(root, scope, ancestors, env) {
+    const untracked = entries(await runGit(root, ['ls-files', '-z', '--others', '--exclude-standard'], undefined, env));
+    const sensitive = untracked.find(sensitiveUntracked);
+    if (sensitive) {
+        throw new Error(`Untracked credential/config file ${JSON.stringify(relativeName(scope, root, sensitive))} prevents a safe checkpoint. Exclude it with Git ignore rules before delegating.`);
     }
-    const files = [...new Set(entries(await runGit(root, ['ls-files', '-z', '--cached'])).concat(untracked))];
-    if (files.length > exports.CHECKPOINT_LIMITS.files)
-        throw new Error('Workspace exceeds the checkpoint file-count limit');
-    let bytes = 0;
+    const staged = entries(await runGit(root, ['ls-files', '--stage', '-z'], undefined, env));
+    const cached = staged.map(entry => entry.slice(entry.indexOf('\t') + 1));
+    const gitlinks = new Set(staged.filter(entry => entry.startsWith('160000 ')).map(entry => entry.slice(entry.indexOf('\t') + 1)));
+    const files = [...new Set(cached.concat(untracked.map(file => file.replace(/\/$/, ''))))];
     const parents = new Set();
+    const checked = new Set();
+    const repositories = new Set();
+    const plainDirectories = [];
+    const checkRepository = async (directory) => {
+        if (directory === '.' || checked.has(directory))
+            return;
+        checked.add(directory);
+        const absolute = path_1.default.join(root, directory);
+        try {
+            await promises_1.default.lstat(path_1.default.join(absolute, '.git'));
+        }
+        catch (error) {
+            if (['ENOENT', 'ENOTDIR'].includes(error.code ?? ''))
+                return;
+            throw error;
+        }
+        await nestedGitDirectory(absolute, scope, ancestors);
+        repositories.add(directory);
+    };
     for (const file of files) {
         if (!file || path_1.default.isAbsolute(file) || file.split('/').some(part => part === '..' || part.toLowerCase() === '.git')) {
             throw new Error('Unsafe path in the Git checkpoint');
         }
-        let parent = path_1.default.dirname(file);
+        let parent = path_1.default.posix.dirname(file);
         while (parent !== '.' && !parents.has(parent)) {
             parents.add(parent);
             try {
-                if ((await promises_1.default.lstat(path_1.default.join(root, parent))).isSymbolicLink())
-                    throw new Error('Checkpoint paths cannot cross a symbolic-link directory');
+                if ((await promises_1.default.lstat(path_1.default.join(root, parent))).isSymbolicLink()) {
+                    throw new Error(`Checkpoint paths cannot cross a symbolic-link directory: ${JSON.stringify(relativeName(scope, root, parent))}`);
+                }
+                await checkRepository(parent);
             }
             catch (error) {
-                if (error.code !== 'ENOENT')
+                if (!['ENOENT', 'ENOTDIR'].includes(error.code ?? ''))
                     throw error;
             }
-            parent = path_1.default.dirname(parent);
+            parent = path_1.default.posix.dirname(parent);
         }
         try {
             const stat = await promises_1.default.lstat(path_1.default.join(root, file));
-            if (!stat.isFile() && !stat.isSymbolicLink())
-                throw new Error('Submodules and special files are not supported by Git worktree checkpoints');
+            if (stat.isDirectory()) {
+                await checkRepository(file);
+                // Git also lists the old path when an ordinary tracked file becomes a directory.
+                if (gitlinks.has(file) && !repositories.has(file) && (await promises_1.default.readdir(path_1.default.join(root, file))).length) {
+                    plainDirectories.push(file);
+                }
+            }
+            else if (!stat.isFile() && !stat.isSymbolicLink()) {
+                const kind = stat.isFIFO() ? 'FIFO' : stat.isSocket() ? 'socket' : 'device or special file';
+                throw new Error(`Unsupported checkpoint entry ${JSON.stringify(relativeName(scope, root, file))}: ${kind}`);
+            }
             if (stat.isSymbolicLink()) {
                 const target = await promises_1.default.readlink(path_1.default.join(root, file));
-                const resolved = path_1.default.relative(root, path_1.default.resolve(root, path_1.default.dirname(file), target));
+                const resolved = path_1.default.relative(scope, path_1.default.resolve(root, path_1.default.dirname(file), target));
                 if (path_1.default.isAbsolute(target) || resolved === '..' || resolved.startsWith(`..${path_1.default.sep}`) || path_1.default.isAbsolute(resolved)) {
-                    throw new Error('Checkpoint symbolic links must remain relative and inside the repository');
+                    throw new Error(`Checkpoint symbolic links must remain relative and inside the repository: ${JSON.stringify(relativeName(scope, root, file))}`);
                 }
                 try {
-                    const canonical = path_1.default.relative(root, await promises_1.default.realpath(path_1.default.join(root, file)));
+                    const canonical = path_1.default.relative(scope, await promises_1.default.realpath(path_1.default.join(root, file)));
                     if (canonical === '..' || canonical.startsWith(`..${path_1.default.sep}`) || path_1.default.isAbsolute(canonical)) {
                         throw new Error('Checkpoint symbolic-link chain escapes the repository');
                     }
@@ -152,31 +310,25 @@ async function boundFiles(root) {
                         throw error;
                 }
             }
-            bytes += stat.size;
-            if (bytes > exports.CHECKPOINT_LIMITS.bytes)
-                throw new Error('Workspace exceeds the checkpoint byte limit');
         }
         catch (error) {
-            if (error.code !== 'ENOENT')
+            if (!['ENOENT', 'ENOTDIR'].includes(error.code ?? ''))
                 throw error;
         }
     }
+    const nested = [...repositories].sort().filter(directory => ![...repositories].some(other => directory.startsWith(`${other}/`)));
+    return { cached, repositories: nested, plainDirectories };
 }
-/** Filters and concurrent file growth must not enlarge the immutable tree beyond the filesystem preflight. */
-async function boundTree(root, tree) {
+/** Validate the captured entries after Git filters and filesystem changes. */
+async function validateTree(root, tree) {
     const files = entries(await runGit(root, ['ls-tree', '-r', '-l', '-z', tree]));
-    if (files.length > exports.CHECKPOINT_LIMITS.files)
-        throw new Error('Checkpoint tree exceeds the file-count limit');
-    let bytes = 0;
     for (const file of files) {
         const header = file.slice(0, file.indexOf('\t')).trim().split(/\s+/);
         const size = Number(header[3]);
-        if (header[1] !== 'blob' || !Number.isSafeInteger(size) || size < 0) {
+        const gitlink = header[0] === '160000' && header[1] === 'commit' && exports.GIT_OID.test(header[2]);
+        if (!gitlink && (!/^(100644|100755|120000)$/.test(header[0]) || header[1] !== 'blob' || !Number.isSafeInteger(size) || size < 0)) {
             throw new Error('Checkpoint tree contains an unsupported entry');
         }
-        bytes += size;
-        if (bytes > exports.CHECKPOINT_LIMITS.bytes)
-            throw new Error('Checkpoint tree exceeds the byte limit');
     }
 }
 async function createCheckpointCommit(root, tree, parent, label) {
@@ -190,37 +342,117 @@ async function createCheckpointCommit(root, tree, parent, label) {
         throw new Error('Git returned an invalid checkpoint commit');
     return commit;
 }
-/** Captures working files, including staged/unstaged/untracked input, without writing the user's index. */
-async function captureCheckpoint(root) {
-    const head = await gitText(root, ['rev-parse', '--verify', 'HEAD']);
-    if (!exports.GIT_OID.test(head))
-        throw new Error('Git worktree delegation requires an initial commit');
+async function checkpointHead(root, nested) {
+    try {
+        return await gitText(root, ['rev-parse', '--verify', 'HEAD']);
+    }
+    catch (error) {
+        if (nested && error instanceof GitCommandError) {
+            const branch = await gitText(root, ['symbolic-ref', '-q', 'HEAD']);
+            try {
+                await runGit(root, ['show-ref', '--verify', '--quiet', branch]);
+            }
+            catch (missing) {
+                if (missing instanceof GitCommandError && missing.code === 1)
+                    return '';
+            }
+        }
+        throw new Error(`Git checkpoint requires a usable HEAD${nested ? '' : ' and an initial commit'}`);
+    }
+}
+async function validateIndexFlags(root, env) {
+    const flags = entries(await runGit(root, ['ls-files', '-v', '-z'], undefined, env));
+    // Preserve the source index and never guess whether sparse absences are deletions.
+    if (flags.some(entry => /^[a-zS] /.test(entry))) {
+        throw new Error('Git checkpoints cannot include assume-unchanged or skip-worktree entries. Resolve those flags and sparse checkouts explicitly before delegating.');
+    }
+}
+async function captureTree(root, scope, nested, imported, ancestors) {
+    if (nested)
+        await validateNestedConfig(root);
+    const head = await checkpointHead(root, nested);
     if ((await runGit(root, ['ls-files', '-u', '-z'])).length)
         throw new Error('Resolve the existing Git index conflicts before delegating');
     const originalIndex = await readIndex(root);
-    await boundFiles(root);
+    let inventory = await validateFiles(root, scope, ancestors);
     const directory = await promises_1.default.mkdtemp(path_1.default.join(os_1.default.tmpdir(), 'remote-cli-checkpoint-'));
     try {
         const env = { GIT_INDEX_FILE: path_1.default.join(directory, 'index') };
-        if (originalIndex.length)
-            await promises_1.default.writeFile(env.GIT_INDEX_FILE, originalIndex, { mode: 0o600 });
+        if (originalIndex.bytes.length) {
+            await promises_1.default.writeFile(env.GIT_INDEX_FILE, originalIndex.bytes, { mode: 0o600 });
+            // Git's racy-clean check compares file times with the index's own time.
+            // A fresh copy timestamp can incorrectly bless same-size stale entries.
+            if (originalIndex.mtime)
+                await promises_1.default.utimes(env.GIT_INDEX_FILE, originalIndex.mtime, originalIndex.mtime);
+        }
         else
-            await runGit(root, ['read-tree', head], undefined, env);
-        await runGit(root, ['add', '--all', '--', '.'], undefined, env);
+            await runGit(root, head ? ['read-tree', head] : ['read-tree', '--empty'], undefined, env);
+        await validateIndexFlags(root, env);
+        for (;;) {
+            const replaced = inventory.repositories.concat(inventory.plainDirectories);
+            const removed = inventory.cached.filter(file => replaced.some(directory => file === directory || file.startsWith(`${directory}/`)));
+            if (!removed.length)
+                break;
+            await runGit(root, ['update-index', '--force-remove', '-z', '--stdin'], `${removed.join('\0')}\0`, env);
+            // Replacing a gitlink can expose more embedded repositories. Preserve
+            // earlier discoveries even if outer ignore rules now hide their paths.
+            const next = await validateFiles(root, scope, ancestors, env);
+            const discovered = [...new Set([...inventory.repositories, ...next.repositories])].sort();
+            inventory = { ...next, repositories: discovered.filter(directory => !discovered.some(other => directory.startsWith(`${other}/`))) };
+        }
+        await runGit(root, ['add', '--all', '--', '.', ...inventory.repositories.map(directory => `:(top,exclude,literal)${directory}`)], undefined, env);
+        const repositories = [];
+        for (const relative of inventory.repositories) {
+            const child = path_1.default.join(root, relative);
+            try {
+                const gitDirectory = await nestedGitDirectory(child, scope, ancestors);
+                const snapshot = await captureTree(child, scope, true, imported, [...ancestors, gitDirectory]);
+                const transfer = JSON.stringify([root, snapshot.tree]);
+                if (!imported.has(transfer)) {
+                    await importGitTree(child, root, snapshot.tree);
+                    imported.add(transfer);
+                }
+                await runGit(root, ['read-tree', `--prefix=${relative}/`, snapshot.tree], undefined, env);
+                const metadata = await promises_1.default.stat(gitDirectory);
+                repositories.push({ path: relative, identity: (0, crypto_1.createHash)('sha256')
+                        .update(JSON.stringify([gitDirectory, metadata.dev, metadata.ino, metadata.birthtimeMs])).digest('hex'),
+                    revision: checkpointRevision(snapshot.head, snapshot.tree, snapshot.index, snapshot.repositories) });
+                repositories.push(...snapshot.repositories.map(repository => ({ ...repository, path: `${relative}/${repository.path}` })));
+            }
+            catch (error) {
+                throw new Error(`Nested checkpoint ${JSON.stringify(relativeName(scope, root, relative))} failed: ${error.message}`);
+            }
+        }
         const tree = await gitText(root, ['write-tree'], undefined, env);
-        await runGit(root, ['add', '--all', '--', '.'], undefined, env);
-        if (tree !== await gitText(root, ['write-tree'], undefined, env)
-            || head !== await gitText(root, ['rev-parse', 'HEAD']) || !originalIndex.equals(await readIndex(root))) {
+        if (head !== await checkpointHead(root, nested) || !originalIndex.bytes.equals((await readIndex(root)).bytes)) {
             throw new Error('Workspace changed while its checkpoint was being captured; retry after edits stop');
         }
         if (!exports.GIT_OID.test(tree))
             throw new Error('Git returned an invalid checkpoint tree');
-        await boundTree(root, tree);
-        return { head, tree, commit: await createCheckpointCommit(root, tree, head, `Remote CLI input checkpoint ${(0, crypto_1.randomUUID)()}`),
-            revision: checkpointRevision(head, tree, originalIndex) };
+        await validateTree(root, tree);
+        return { head, tree, index: originalIndex.bytes, repositories };
     }
     finally {
         await promises_1.default.rm(directory, { recursive: true, force: true });
     }
 }
+/** Flatten nested working files in private trees; never alter any source HEAD or index. */
+async function captureCheckpoint(root) {
+    root = await promises_1.default.realpath(root);
+    // Reuse only transfers completed in this capture, never just an existing tree
+    // object that could still reference missing descendants in the object store.
+    const imported = new Set();
+    const common = await promises_1.default.realpath(path_1.default.resolve(root, await gitText(root, ['rev-parse', '--git-common-dir'])));
+    const gitDirectory = await promises_1.default.realpath(await gitText(root, ['rev-parse', '--absolute-git-dir']));
+    const ancestors = [...new Set([common, gitDirectory])];
+    const first = await captureTree(root, root, false, imported, ancestors);
+    const second = await captureTree(root, root, false, imported, ancestors);
+    const revision = checkpointRevision(first.head, first.tree, first.index, first.repositories);
+    if (revision !== checkpointRevision(second.head, second.tree, second.index, second.repositories)) {
+        throw new Error('Workspace changed while its checkpoint was being captured; retry after edits stop');
+    }
+    return { head: first.head, tree: first.tree,
+        commit: await createCheckpointCommit(root, first.tree, first.head, `Remote CLI input checkpoint ${(0, crypto_1.randomUUID)()}`),
+        revision, ...(first.repositories.length ? { repositories: first.repositories } : {}) };
+}
 //# sourceMappingURL=GitCheckpoint.js.map

package/dist/delegation/GitCheckpoint.js.map

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package/dist/delegation/contract.d.ts

@@ -26,7 +26,7 @@ export declare const DELEGATION_TOOLS: readonly [{
         readonly destructiveHint: true;
         readonly openWorldHint: true;
     };
-    readonly description: "Accept an independent managed task on a different backend. Git workspaces use isolated, reusable worker worktrees and may run concurrently; non-Git directories use the shared workspace in FIFO order. Discover scheduling with remote_cli_list_backends. Git input includes nonignored working changes; ignored dependencies are not copied. Completion does not integrate file changes: inspect then explicitly apply or retain artifacts with remote_cli_integrate after all accepted workers finish. Worktrees are not an OS sandbox. The cumulative limit is 12 accepted tasks, including failed/cancelled tasks; queue waits expire after one hour. Same-backend delegation is rejected; use the current backend directly or its native subagents. Pass self-contained context and acceptance criteria; workers never inherit the coordinator conversation. A reused lane retains only its own previous conversation, not sibling results, and starts each Git task on a fresh baseline. Use inherit, including research; put no-write requirements in the objective. In shared-workspace mode do not edit concurrently with a worker. Use remote_cli_result for status; if you return after submitting tasks, Remote CLI waits and resumes this coordinator. Workers cannot delegate again.";
+    readonly description: "Accept an independent managed task on a different backend. Git workspaces use isolated, reusable worker worktrees and may run concurrently; non-Git directories use the shared workspace in FIFO order. Discover scheduling with remote_cli_list_backends. Git input includes nonignored working changes. Initialized local submodules and embedded repositories provide working files only; nested Git metadata/history and ignored dependencies are not copied. Uninitialized submodule paths remain empty. Completion does not integrate file changes: inspect then explicitly apply or retain artifacts with remote_cli_integrate after all accepted workers finish. Worktrees are not an OS sandbox. The cumulative limit is 12 accepted tasks, including failed/cancelled tasks; queue waits expire after one hour. Same-backend delegation is rejected; use the current backend directly or its native subagents. Pass self-contained context and acceptance criteria; workers never inherit the coordinator conversation. A reused lane retains only its own previous conversation, not sibling results, and starts each Git task on a fresh baseline. Use inherit, including research; put no-write requirements in the objective. In shared-workspace mode do not edit concurrently with a worker. Use remote_cli_result for status; if you return after submitting tasks, Remote CLI waits and resumes this coordinator. Workers cannot delegate again.";
     readonly inputSchema: {
         type: string;
         properties: Record<string, unknown>;

package/dist/delegation/contract.js

@@ -23,7 +23,7 @@ exports.DELEGATION_TOOLS = [
     {
         name: 'remote_cli_delegate',
         annotations: { readOnlyHint: false, destructiveHint: true, openWorldHint: true },
-        description: 'Accept an independent managed task on a different backend. Git workspaces use isolated, reusable worker worktrees and may run concurrently; non-Git directories use the shared workspace in FIFO order. Discover scheduling with remote_cli_list_backends. Git input includes nonignored working changes; ignored dependencies are not copied. Completion does not integrate file changes: inspect then explicitly apply or retain artifacts with remote_cli_integrate after all accepted workers finish. Worktrees are not an OS sandbox. The cumulative limit is 12 accepted tasks, including failed/cancelled tasks; queue waits expire after one hour. Same-backend delegation is rejected; use the current backend directly or its native subagents. Pass self-contained context and acceptance criteria; workers never inherit the coordinator conversation. A reused lane retains only its own previous conversation, not sibling results, and starts each Git task on a fresh baseline. Use inherit, including research; put no-write requirements in the objective. In shared-workspace mode do not edit concurrently with a worker. Use remote_cli_result for status; if you return after submitting tasks, Remote CLI waits and resumes this coordinator. Workers cannot delegate again.',
+        description: 'Accept an independent managed task on a different backend. Git workspaces use isolated, reusable worker worktrees and may run concurrently; non-Git directories use the shared workspace in FIFO order. Discover scheduling with remote_cli_list_backends. Git input includes nonignored working changes. Initialized local submodules and embedded repositories provide working files only; nested Git metadata/history and ignored dependencies are not copied. Uninitialized submodule paths remain empty. Completion does not integrate file changes: inspect then explicitly apply or retain artifacts with remote_cli_integrate after all accepted workers finish. Worktrees are not an OS sandbox. The cumulative limit is 12 accepted tasks, including failed/cancelled tasks; queue waits expire after one hour. Same-backend delegation is rejected; use the current backend directly or its native subagents. Pass self-contained context and acceptance criteria; workers never inherit the coordinator conversation. A reused lane retains only its own previous conversation, not sibling results, and starts each Git task on a fresh baseline. Use inherit, including research; put no-write requirements in the objective. In shared-workspace mode do not edit concurrently with a worker. Use remote_cli_result for status; if you return after submitting tasks, Remote CLI waits and resumes this coordinator. Workers cannot delegate again.',
         inputSchema: object({
             backend: { type: 'string', enum: exports.DELEGATION_BACKENDS },
             objective: { type: 'string', minLength: 1, maxLength: 24000 },