@younndai/lyt 0.9.9 → 0.10.0

package/README.md

@@ -71,6 +71,19 @@ leaves (unique-leaf, errors on collision), aliases, and `lyt:vault:` origin
 coordinates all resolve to it. `lyt vault init <mesh>/<vault>` is
 create-if-missing.
 
+## Metadata that stays correct
+
+Every note carries an 8-field frontmatter contract — title, real dates, tags, a `topic`, and a `purpose` you write. Lyt keeps it correct at rest, sets it at capture, and heals legacy files — without ever touching your prose:
+
+```bash
+lyt capture "an idea" --dir projects/notes   # choose where it lands; sets a topic interactively
+lyt vault backfill <name>                     # fill missing frontmatter on an existing vault, in place
+lyt vault reconcile <name> --apply            # heal notes that are unindexed or missing metadata
+lyt doctor                                    # count notes with missing or invalid frontmatter
+```
+
+Backfill fills titles, genuine created/modified dates (from git history), and keyword tags **with no model required** — on any vault, including one you just imported. `purpose` is left blank and flagged, never guessed; anything you authored is never overwritten. When a local embedding model is present, `topic:` is enriched too — capture *suggests* one for you to confirm (never auto-selected), and backfill assigns a confident match from your vault's existing labels, leaving it blank when unsure. Topics are ranked against your vault's current on-disk labels and computed on-device — nothing is sent anywhere. Every machine-filled field is provenance-stamped, so it stays distinguishable from your own writing.
+
 ## The Lyt toolchain
 
 Lyt is an open toolchain — `@younndai/lyt` composes these packages, and you can also depend on any of them directly:

package/dist/automator-bodies/metadata-filler.d.ts

@@ -1,5 +1,6 @@
 import type { Client } from "@libsql/client";
 import { type LytRunContext } from "@younndai/lyt-runner";
+import { type Embedder } from "@younndai/lyt-vault";
 declare const MANDATORY_FIELDS: readonly ["title", "created", "modified", "tags", "purpose", "topic", "mesh-visibility", "weight"];
 type MandatoryField = (typeof MANDATORY_FIELDS)[number];
 export interface MetadataFillerArgs {
@@ -19,6 +20,18 @@ export interface MetadataFillerOutcome {
     filesWritten: string[];
 }
 export declare function runMetadataFillerBody(ctx: LytRunContext, args: MetadataFillerArgs): Promise<MetadataFillerOutcome>;
+interface EnrichmentContext {
+    existingTopics: string[];
+    labelVectors: Float32Array[];
+    embedder: Embedder | null;
+}
+interface FigmentEnrichment {
+    topic: string | null;
+    topicConfidence?: number | null;
+    tags: string[];
+}
+declare function enrichFigment(raw: string, slug: string, ctx: EnrichmentContext): Promise<FigmentEnrichment>;
+declare function resolveFaithfulDate(absPath: string, vaultPath: string, vaultIsGitRepo: boolean): Promise<string>;
 interface FillResult {
     content: string;
     fieldsFilled: MandatoryField[];
@@ -26,9 +39,15 @@ interface FillResult {
 interface FillDefaults {
     filenameSlug: string;
     now: string;
+    enriched?: FigmentEnrichment;
 }
 export declare function fillMissingMandatoryFields(raw: string, defaults: FillDefaults): FillResult;
-declare function walkMarkdownFiles(root: string): string[];
+export declare function detectMissingMandatoryFields(raw: string): MandatoryField[];
+export declare function detectBlankEnrichableFields(raw: string): ("topic" | "tags")[];
+declare function renderTagsValue(tags: readonly string[]): string;
+declare function renderTopicValue(topic: string | null): string;
 export { MANDATORY_FIELDS };
-export { walkMarkdownFiles as _walkMarkdownFilesForTests };
+export { resolveFaithfulDate as _resolveFaithfulDateForTests };
+export { enrichFigment as _enrichFigmentForTests, renderTagsValue as _renderTagsValueForTests, renderTopicValue as _renderTopicValueForTests, };
+export type { EnrichmentContext as _EnrichmentContext, FigmentEnrichment as _FigmentEnrichment };
 //# sourceMappingURL=metadata-filler.d.ts.map

package/dist/automator-bodies/metadata-filler.d.ts.map

@@ -1 +1 @@
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package/dist/automator-bodies/metadata-filler.js

@@ -1,6 +1,7 @@
-import { readdirSync, readFileSync, statSync } from "node:fs";
-import { join, relative, sep, posix } from "node:path";
+import { readFileSync, statSync } from "node:fs";
+import { relative, sep, posix } from "node:path";
 import { writeMarkdownWithStamp } from "@younndai/lyt-runner";
+import { classifyTopic, embedderMemoized, gitCommitterDateToIso, isGitRepo, isIndexable, loadEmbedder, modelCachePresent, parseFigmentTopicTags, precomputeTopicLabelVectors, runGit, stripFrontmatter, suggestFigmentTags, walkVaultMarkdownFiles, } from "@younndai/lyt-vault";
 const MANDATORY_FIELDS = [
     "title",
     "created",
@@ -12,22 +13,39 @@ const MANDATORY_FIELDS = [
     "weight",
 ];
 export async function runMetadataFillerBody(ctx, args) {
-    const notesRoot = join(args.vaultPath, "notes");
-    const targets = walkMarkdownFiles(notesRoot);
+    const targets = walkVaultMarkdownFiles(args.vaultPath, isIndexable);
     const outcome = {
         filesScanned: targets.length,
         filesMutated: 0,
         fieldsFilledTotal: 0,
         filesWritten: [],
     };
+    const vaultIsGitRepo = await isGitRepo(args.vaultPath);
+    const enrichCtx = await resolveEnrichmentContext(targets);
     for (const absPath of targets) {
         const raw = readFileSync(absPath, "utf8");
+        const missing = detectMissingMandatoryFields(raw);
+        const blankEnrichable = detectBlankEnrichableFields(raw);
+        if (missing.length === 0 && blankEnrichable.length === 0)
+            continue;
+        const faithfulDate = await resolveFaithfulDate(absPath, args.vaultPath, vaultIsGitRepo);
+        const wantsTopic = missing.includes("topic") || blankEnrichable.includes("topic");
+        const wantsTags = missing.includes("tags") || blankEnrichable.includes("tags");
+        const enriched = wantsTopic || wantsTags
+            ? await enrichFigment(raw, filenameSlug(absPath), enrichCtx)
+            : undefined;
         const filled = fillMissingMandatoryFields(raw, {
             filenameSlug: filenameSlug(absPath),
-            now: new Date(ctx.startedAt).toISOString(),
+            now: faithfulDate,
+            ...(enriched !== undefined ? { enriched } : {}),
         });
         if (filled.fieldsFilled.length === 0)
             continue;
+        const enrichedFields = enriched !== undefined
+            ? filled.fieldsFilled.filter((f) => (f === "topic" && enriched.topic !== null) ||
+                (f === "tags" && enriched.tags.length > 0))
+            : [];
+        const topicWasEnriched = enrichedFields.includes("topic");
         await writeMarkdownWithStamp(ctx, args.vaultDb, {
             path: absPath,
             content: filled.content,
@@ -36,7 +54,13 @@ export async function runMetadataFillerBody(ctx, args) {
                 src: `automator:${args.automatorName}/v${args.automatorVersion}`,
                 method: "filler",
                 confidence: 1.0,
-                details: { fields_filled: filled.fieldsFilled },
+                details: {
+                    fields_filled: filled.fieldsFilled,
+                    ...(enrichedFields.length > 0 ? { enriched_fields: enrichedFields } : {}),
+                    ...(topicWasEnriched && enriched?.topicConfidence !== null && enriched?.topicConfidence !== undefined
+                        ? { topic_confidence: enriched.topicConfidence }
+                        : {}),
+                },
             },
             ...(args.ledgerClients !== undefined ? { ledgerClients: args.ledgerClients } : {}),
         });
@@ -46,8 +70,91 @@ export async function runMetadataFillerBody(ctx, args) {
     }
     return outcome;
 }
+async function resolveEnrichmentContext(targets) {
+    const rawTopics = [];
+    const seen = new Set();
+    for (const absPath of targets) {
+        let topic = null;
+        try {
+            topic = parseFigmentTopicTags(readFileSync(absPath, "utf8")).topic;
+        }
+        catch {
+            continue;
+        }
+        if (topic === null)
+            continue;
+        const trimmed = topic.trim();
+        if (trimmed.length === 0)
+            continue;
+        const key = trimmed.toLowerCase();
+        if (seen.has(key))
+            continue;
+        seen.add(key);
+        rawTopics.push(trimmed);
+    }
+    let embedder = null;
+    if (modelCachePresent() || embedderMemoized()) {
+        try {
+            const load = await loadEmbedder();
+            if (load.available)
+                embedder = load.embedder;
+        }
+        catch {
+            embedder = null;
+        }
+    }
+    const { labels, vectors } = await precomputeTopicLabelVectors(rawTopics, embedder);
+    return { existingTopics: labels, labelVectors: vectors, embedder };
+}
+async function enrichFigment(raw, slug, ctx) {
+    const body = stripFrontmatter(raw);
+    const title = slug.replace(/[-_]+/g, " ").trim();
+    const figmentText = `${title}\n${body}`.trim();
+    const tags = figmentText.length > 0 ? suggestFigmentTags(title, body) : [];
+    let topic = null;
+    let topicConfidence = null;
+    if (ctx.embedder !== null && ctx.existingTopics.length > 0 && figmentText.length > 0) {
+        const result = await classifyTopic(figmentText, ctx.existingTopics, ctx.embedder, {
+            labelVectors: ctx.labelVectors,
+        });
+        topic = result.topic;
+        if (topic !== null) {
+            const hit = result.ranked.find((r) => r.topic === topic);
+            topicConfidence = hit !== undefined ? hit.score : null;
+        }
+    }
+    return { topic, topicConfidence, tags };
+}
+async function resolveFaithfulDate(absPath, vaultPath, vaultIsGitRepo) {
+    if (vaultIsGitRepo) {
+        try {
+            const rel = relative(vaultPath, absPath).split(sep).join(posix.sep);
+            const r = await runGit(["log", "-1", "--format=%ct", "--", rel], {
+                cwd: vaultPath,
+                allowFailure: true,
+            });
+            if (r.code === 0) {
+                const raw = r.stdout.trim();
+                if (raw.length > 0) {
+                    const iso = gitCommitterDateToIso(raw);
+                    if (iso !== null)
+                        return iso;
+                }
+            }
+        }
+        catch {
+        }
+    }
+    return new Date(statSync(absPath).mtimeMs).toISOString();
+}
 const FRONTMATTER_DELIM = "---";
 export function fillMissingMandatoryFields(raw, defaults) {
+    const BOM = String.fromCodePoint(0xfeff);
+    const hasBom = raw.startsWith(BOM);
+    const inner = fillMissingMandatoryFieldsInner(hasBom ? raw.slice(1) : raw, defaults);
+    return hasBom ? { ...inner, content: BOM + inner.content } : inner;
+}
+function fillMissingMandatoryFieldsInner(raw, defaults) {
     const lines = raw.split(/\r?\n/);
     let firstNonEmpty = -1;
     for (let i = 0; i < lines.length; i++) {
@@ -79,25 +186,137 @@ export function fillMissingMandatoryFields(raw, defaults) {
     }
     const present = new Set();
     for (let i = firstNonEmpty + 1; i < closeIdx; i++) {
-        const lineNoIndent = lines[i].replace(/^\s+/, "");
+        const line = lines[i];
+        if (/^\s/.test(line))
+            continue;
         for (const f of MANDATORY_FIELDS) {
-            if (lineNoIndent.startsWith(`${f}:`) || lineNoIndent.startsWith(`${f} :`)) {
+            if (line.startsWith(`${f}:`) || line.startsWith(`${f} :`)) {
                 present.add(f);
                 break;
             }
         }
     }
     const missing = MANDATORY_FIELDS.filter((f) => !present.has(f));
-    if (missing.length === 0) {
+    const blankReplaced = [];
+    for (const field of ["topic", "tags"]) {
+        if (!present.has(field))
+            continue;
+        const rendered = renderDefault(field, defaults);
+        if (rendered === blankDefaultFor(field))
+            continue;
+        for (let i = firstNonEmpty + 1; i < closeIdx; i++) {
+            const line = lines[i];
+            if (/^\s/.test(line))
+                continue;
+            if (!(line.startsWith(`${field}:`) || line.startsWith(`${field} :`)))
+                continue;
+            const value = line.slice(line.indexOf(":") + 1).trim();
+            if (!isBlankEnrichableValue(field, value))
+                break;
+            lines[i] = `${field}: ${rendered}`;
+            blankReplaced.push(field);
+            break;
+        }
+    }
+    if (missing.length === 0 && blankReplaced.length === 0) {
         return { content: raw, fieldsFilled: [] };
     }
     const insertions = missing.map((f) => `${f}: ${renderDefault(f, defaults)}`);
-    lines.splice(closeIdx, 0, ...insertions);
+    if (insertions.length > 0)
+        lines.splice(closeIdx, 0, ...insertions);
     return {
         content: lines.join("\n"),
-        fieldsFilled: missing,
+        fieldsFilled: [...missing, ...blankReplaced],
     };
 }
+function isBlankEnrichableValue(field, value) {
+    const v = value.trim();
+    if (v.length === 0)
+        return true;
+    if (v === '""' || v === "''")
+        return true;
+    if (field === "tags" && v === "[]")
+        return true;
+    return false;
+}
+function blankDefaultFor(field) {
+    return field === "tags" ? "[]" : '""';
+}
+export function detectMissingMandatoryFields(raw) {
+    const BOM = String.fromCodePoint(0xfeff);
+    const inner = raw.startsWith(BOM) ? raw.slice(1) : raw;
+    const lines = inner.split(/\r?\n/);
+    let firstNonEmpty = -1;
+    for (let i = 0; i < lines.length; i++) {
+        if (lines[i].length > 0) {
+            firstNonEmpty = i;
+            break;
+        }
+    }
+    if (firstNonEmpty === -1 || lines[firstNonEmpty] !== FRONTMATTER_DELIM) {
+        return [...MANDATORY_FIELDS];
+    }
+    let closeIdx = -1;
+    for (let i = firstNonEmpty + 1; i < lines.length; i++) {
+        if (lines[i] === FRONTMATTER_DELIM) {
+            closeIdx = i;
+            break;
+        }
+    }
+    if (closeIdx === -1)
+        return [...MANDATORY_FIELDS];
+    const present = new Set();
+    for (let i = firstNonEmpty + 1; i < closeIdx; i++) {
+        const line = lines[i];
+        if (/^\s/.test(line))
+            continue;
+        for (const f of MANDATORY_FIELDS) {
+            if (line.startsWith(`${f}:`) || line.startsWith(`${f} :`)) {
+                present.add(f);
+                break;
+            }
+        }
+    }
+    return MANDATORY_FIELDS.filter((f) => !present.has(f));
+}
+export function detectBlankEnrichableFields(raw) {
+    const BOM = String.fromCodePoint(0xfeff);
+    const inner = raw.startsWith(BOM) ? raw.slice(1) : raw;
+    const lines = inner.split(/\r?\n/);
+    let firstNonEmpty = -1;
+    for (let i = 0; i < lines.length; i++) {
+        if (lines[i].length > 0) {
+            firstNonEmpty = i;
+            break;
+        }
+    }
+    if (firstNonEmpty === -1 || lines[firstNonEmpty] !== FRONTMATTER_DELIM)
+        return [];
+    let closeIdx = -1;
+    for (let i = firstNonEmpty + 1; i < lines.length; i++) {
+        if (lines[i] === FRONTMATTER_DELIM) {
+            closeIdx = i;
+            break;
+        }
+    }
+    if (closeIdx === -1)
+        return [];
+    const blank = [];
+    for (const field of ["topic", "tags"]) {
+        for (let i = firstNonEmpty + 1; i < closeIdx; i++) {
+            const line = lines[i];
+            if (/^\s/.test(line))
+                continue;
+            if (!(line.startsWith(`${field}:`) || line.startsWith(`${field} :`)))
+                continue;
+            const value = line.slice(line.indexOf(":") + 1).trim();
+            if (isBlankEnrichableValue(field, value))
+                blank.push(field);
+            break;
+        }
+    }
+    return blank;
+}
 function renderFreshFrontmatter(defaults) {
     const body = MANDATORY_FIELDS.map((f) => `${f}: ${renderDefault(f, defaults)}`).join("\n");
     return `---\n${body}\n---`;
@@ -111,43 +330,27 @@ function renderDefault(field, defaults) {
         case "modified":
             return defaults.now;
         case "tags":
-            return "[]";
+            return renderTagsValue(defaults.enriched?.tags ?? []);
         case "purpose":
             return '""';
         case "topic":
-            return '""';
+            return renderTopicValue(defaults.enriched?.topic ?? null);
         case "mesh-visibility":
             return "local";
         case "weight":
             return "3";
     }
 }
-function walkMarkdownFiles(root) {
-    const out = [];
-    let names;
-    try {
-        names = readdirSync(root);
-    }
-    catch {
-        return out;
-    }
-    for (const name of names) {
-        const p = join(root, name);
-        let stat;
-        try {
-            stat = statSync(p);
-        }
-        catch {
-            continue;
-        }
-        if (stat.isDirectory()) {
-            out.push(...walkMarkdownFiles(p));
-        }
-        else if (stat.isFile() && p.toLowerCase().endsWith(".md")) {
-            out.push(p);
-        }
-    }
-    return out;
+function renderTagsValue(tags) {
+    if (tags.length === 0)
+        return "[]";
+    const items = tags.map((t) => `"${t.replace(/\\/g, "\\\\").replace(/"/g, '\\"')}"`);
+    return `[${items.join(", ")}]`;
+}
+function renderTopicValue(topic) {
+    if (topic === null || topic.trim().length === 0)
+        return '""';
+    return `"${topic.replace(/\\/g, "\\\\").replace(/"/g, '\\"')}"`;
 }
 function filenameSlug(absPath) {
     const parts = absPath.split(/[\\/]/);
@@ -158,5 +361,6 @@ function toVaultRel(absPath, vaultRoot) {
     return relative(vaultRoot, absPath).split(sep).join(posix.sep);
 }
 export { MANDATORY_FIELDS };
-export { walkMarkdownFiles as _walkMarkdownFilesForTests };
+export { resolveFaithfulDate as _resolveFaithfulDateForTests };
+export { enrichFigment as _enrichFigmentForTests, renderTagsValue as _renderTagsValueForTests, renderTopicValue as _renderTopicValueForTests, };
 //# sourceMappingURL=metadata-filler.js.map

package/dist/automator-bodies/metadata-filler.js.map

@@ -1 +1 @@
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package/dist/cli.js

@@ -7,11 +7,14 @@ import { buildSkillsCommand } from "@younndai/lyt-skills";
 import { registerVaultVerbs } from "@younndai/lyt-vault";
 import { buildAgentManualCommand, buildDiscoverCommand, buildRepairCommand, } from "@younndai/lyt-vault";
 import { buildAutomatorRunSubcommand } from "./cli-automator-run.js";
+import { buildBackfillCommand } from "./commands/backfill.js";
 import { buildBenchCommand } from "./commands/bench.js";
 import { buildCaptureCommand } from "./commands/capture.js";
+import { buildContractCommand } from "./commands/contract.js";
 import { buildLytInitCommand } from "./commands/init.js";
 import { buildModelCommand } from "./commands/model.js";
 import { buildPrimerCommand } from "./commands/primer.js";
+import { buildReconcileCommand } from "./commands/reconcile.js";
 import { buildReindexCommand } from "./commands/reindex.js";
 import { buildSearchCommand } from "./commands/search.js";
 const program = new Command();
@@ -32,11 +35,18 @@ if (automatorCmd === undefined) {
     throw new Error("@younndai/lyt meta CLI: expected registerVaultVerbs to register an 'automator' command but none was found.");
 }
 automatorCmd.addCommand(buildAutomatorRunSubcommand());
+const vaultCmd = program.commands.find((c) => c.name() === "vault");
+if (vaultCmd === undefined) {
+    throw new Error("@younndai/lyt meta CLI: expected registerVaultVerbs to register a 'vault' command but none was found.");
+}
+vaultCmd.addCommand(buildBackfillCommand());
+vaultCmd.addCommand(buildReconcileCommand());
 program.addCommand(buildSyncCommand());
 program.addCommand(buildPodStatusCommand());
 program.addCommand(buildMcpSubcommand());
 program.addCommand(buildSearchCommand());
 program.addCommand(buildCaptureCommand());
+program.addCommand(buildContractCommand());
 program.addCommand(buildPrimerCommand());
 program.addCommand(buildReindexCommand());
 program.addCommand(buildModelCommand());

package/dist/cli.js.map

@@ -1 +1 @@
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package/dist/commands/backfill.d.ts

@@ -0,0 +1,3 @@
+import { Command } from "commander";
+export declare function buildBackfillCommand(): Command;
+//# sourceMappingURL=backfill.d.ts.map

package/dist/commands/backfill.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/backfill.js

@@ -0,0 +1,101 @@
+import { Command } from "commander";
+import { reconcileVaultScan } from "@younndai/lyt-vault";
+import { runAutomator } from "../automator-run.js";
+function asOutcome(body) {
+    const o = (body ?? {});
+    return {
+        filesScanned: typeof o.filesScanned === "number" ? o.filesScanned : 0,
+        filesMutated: typeof o.filesMutated === "number" ? o.filesMutated : 0,
+        fieldsFilledTotal: typeof o.fieldsFilledTotal === "number" ? o.fieldsFilledTotal : 0,
+        filesWritten: Array.isArray(o.filesWritten) ? o.filesWritten : [],
+    };
+}
+export function buildBackfillCommand() {
+    return new Command("backfill")
+        .description("Backfill missing frontmatter across a vault's figments (deterministic: real git/fs dates, purpose/topic left blank + flagged, provenance-stamped). Never overwrites existing values. Writes locally; use --push to also commit + push. NOT `lyt repair`.")
+        .argument("<name>", "Vault name to backfill (must be registered)")
+        .option("--dry-run", "Preview which figments WOULD be filled — read-only, writes nothing")
+        .option("--push", "Also git-commit + push the fills (default: write locally, run `lyt sync` to publish)")
+        .option("--json", "Emit a JSON result instead of the human-readable summary")
+        .action(async (name, opts) => {
+        if (opts.dryRun === true) {
+            let scan;
+            try {
+                scan = await reconcileVaultScan(name);
+            }
+            catch (err) {
+                reportError(opts, name, err);
+                process.exit(1);
+            }
+            const wouldFill = scan.missingFrontmatter;
+            if (opts.json === true) {
+                console.log(JSON.stringify({
+                    dry_run: true,
+                    vault: { name: scan.vaultName, path: scan.vaultPath },
+                    scanned: scan.scanned,
+                    would_fill: wouldFill.length,
+                    figments: wouldFill,
+                }, null, 2));
+            }
+            else {
+                console.log(`backfill --dry-run ${scan.vaultName}: ${wouldFill.length}/${scan.scanned} figment(s) would be filled (nothing written).`);
+                for (const f of wouldFill.slice(0, 20)) {
+                    console.log(`  ${f.relPath} — missing: ${f.missing.join(", ")}`);
+                }
+                if (wouldFill.length > 20) {
+                    console.log(`  … and ${wouldFill.length - 20} more`);
+                }
+            }
+            return;
+        }
+        let result;
+        try {
+            result = await runAutomator({
+                automator: "metadata-filler",
+                vault: name,
+                ...(opts.push !== true ? { noPush: true } : {}),
+            });
+        }
+        catch (err) {
+            reportError(opts, name, err);
+            process.exit(1);
+        }
+        const outcome = asOutcome(result.body);
+        const payload = {
+            ok: result.ok,
+            vault: { name: result.plan.vaultName, path: result.plan.vaultPath },
+            automator_version: result.automatorVersion,
+            status: result.status,
+            error_summary: result.errorSummary,
+            pushed: opts.push === true,
+            files_scanned: outcome.filesScanned,
+            files_mutated: outcome.filesMutated,
+            fields_filled_total: outcome.fieldsFilledTotal,
+            files_written: outcome.filesWritten,
+        };
+        if (opts.json === true) {
+            console.log(JSON.stringify(payload, null, 2));
+        }
+        else {
+            console.log(`${result.ok ? "✓" : "✗"} backfill ${payload.vault.name}: ` +
+                `${outcome.filesMutated}/${outcome.filesScanned} figment(s) filled ` +
+                `(${outcome.fieldsFilledTotal} field(s))${opts.push === true ? " [pushed]" : " [local — run `lyt sync` to publish]"}` +
+                `${payload.error_summary !== null ? ` — ${payload.error_summary}` : ""}`);
+            if (outcome.filesMutated === 0 && result.ok) {
+                console.log("  all figments already carry contract-valid frontmatter (nothing to fill).");
+            }
+        }
+        if (!result.ok)
+            process.exit(1);
+    });
+}
+function reportError(opts, name, err) {
+    const msg = err instanceof Error ? err.message : String(err);
+    if (opts.json === true) {
+        console.log(JSON.stringify({ ok: false, vault: name, error: msg }, null, 2));
+    }
+    else {
+        console.error(`✗ backfill ${name}: ${msg}`);
+    }
+}
+//# sourceMappingURL=backfill.js.map

package/dist/commands/backfill.js.map

@@ -0,0 +1 @@
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package/dist/commands/capture.d.ts

@@ -1,4 +1,18 @@
 import { Command } from "commander";
 export declare function buildCaptureCommand(): Command;
+export type TopicPick = {
+    kind: "reprompt";
+} | {
+    kind: "existing";
+    index: number;
+} | {
+    kind: "new";
+} | {
+    kind: "typed";
+    value: string;
+};
+export declare function interpretTopicPick(answer: string, count: number): TopicPick;
+export declare function resolveTopicFolderDir(explicitDir: string | undefined, topicFolder: boolean | undefined, topic: string | undefined): string | undefined;
+export declare function topicToFolderName(topic: string): string;
 export declare function parseTagsOpt(raw: string | undefined): string | undefined;
 //# sourceMappingURL=capture.d.ts.map

package/dist/commands/capture.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"capture.d.ts","sourceRoot":"","sources":["../../src/commands/capture.ts"],"names":[],"mappings":"AAkCA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAqCpC,wBAAgB,mBAAmB,IAAI,OAAO,CAuD7C;AA+ND,MAAM,MAAM,SAAS,GACjB;IAAE,IAAI,EAAE,UAAU,CAAA;CAAE,GACpB;IAAE,IAAI,EAAE,UAAU,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,GACnC;IAAE,IAAI,EAAE,KAAK,CAAA;CAAE,GACf;IAAE,IAAI,EAAE,OAAO,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC;AAErC,wBAAgB,kBAAkB,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,SAAS,CAU3E;AAmDD,wBAAgB,qBAAqB,CACnC,WAAW,EAAE,MAAM,GAAG,SAAS,EAC/B,WAAW,EAAE,OAAO,GAAG,SAAS,EAChC,KAAK,EAAE,MAAM,GAAG,SAAS,GACxB,MAAM,GAAG,SAAS,CAMpB;AAQD,wBAAgB,iBAAiB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAYvD;AA8BD,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,SAAS,GAAG,MAAM,GAAG,SAAS,CAYxE"}

package/dist/commands/capture.js

@@ -1,6 +1,6 @@
 import { Command } from "commander";
 import { createInterface } from "node:readline/promises";
-import { captureIndexFlow, closeRegistry, getVaultByName, listVaults, openRegistry, patternRunFlow, } from "@younndai/lyt-vault";
+import { captureIndexFlow, closeRegistry, getVaultByName, listVaults, rankVaultTopicsFlow, openRegistry, patternRunFlow, } from "@younndai/lyt-vault";
 const CAPTURE_PATTERN = "knowledge-capture";
 const CAPTURE_VERB = "capture";
 const POD_MAP_VAULT_NAME = "lyt-pod-map";
@@ -16,6 +16,8 @@ export function buildCaptureCommand() {
         .option("--weight <n>", "Importance 1-5 (default 3)")
         .option("--mesh-visibility <v>", "local | parent | public (default local)")
         .option("--slug <slug>", "Filename slug (default: derived from the title)")
+        .option("--dir <vault-relative>", "Destination directory inside the vault (default: notes/). Fail-closed: rejects '..', absolute paths, and the reserved .lyt/.obsidian/.git trees.")
+        .option("--topic-folder", "Route the capture into a topic-named folder (topics/<topic-slug>/) instead of notes/. Opt-in; ignored when --dir is given (explicit wins). The topic still sets the `topic:` field either way.")
         .option("--vars <kv>", "Repeatable key=value override (advanced)", collectVars, {})
         .option("--index-only <relpath>", "Index an already-written figment (the /lyt-capture skill uses this after its inline Write); requires --vault. Does NOT write.")
         .option("--json", "Emit JSON")
@@ -76,7 +78,7 @@ async function runCapture(text, opts) {
     }
     const slug = opts.slug ?? slugify(title);
     const purpose = opts.purpose ?? opts.vars["purpose"] ?? (await promptIfTty("Why keep this? (purpose): "));
-    const topic = opts.topic ?? opts.vars["topic"] ?? (await promptIfTty("Topic (semantic category): "));
+    const topic = opts.topic ?? opts.vars["topic"] ?? (await resolveTopicInteractive(vaultName, `${title}\n${text ?? ""}`));
     const tags = parseTagsOpt(opts.tags);
     const vars = {
         title,
@@ -87,11 +89,13 @@ async function runCapture(text, opts) {
         ...(opts.meshVisibility !== undefined ? { "mesh-visibility": opts.meshVisibility } : {}),
         ...opts.vars,
     };
+    const dir = resolveTopicFolderDir(opts.dir, opts.topicFolder, topic);
     const r = await patternRunFlow({
         patternName: CAPTURE_PATTERN,
         verbId: CAPTURE_VERB,
         vaultName,
         slug,
+        ...(dir !== undefined ? { dir } : {}),
         vars,
     });
     if (opts.json === true) {
@@ -138,6 +142,88 @@ async function promptIfTty(question) {
         rl.close();
     }
 }
+async function resolveTopicInteractive(vaultName, figmentText) {
+    if (process.stdin.isTTY !== true)
+        return undefined;
+    let topics = [];
+    let recommendedTopic = null;
+    try {
+        const ranked = await rankVaultTopicsFlow({
+            vaultName,
+            ...(figmentText !== undefined ? { figmentText } : {}),
+        });
+        topics = ranked.topics;
+        recommendedTopic = ranked.recommendedTopic;
+    }
+    catch {
+        topics = [];
+        recommendedTopic = null;
+    }
+    if (topics.length === 0) {
+        return promptIfTty("Topic (semantic category): ");
+    }
+    return pickTopicTty(topics, recommendedTopic);
+}
+export function interpretTopicPick(answer, count) {
+    const ans = answer.trim();
+    if (ans.length === 0)
+        return { kind: "reprompt" };
+    const n = Number(ans);
+    if (Number.isInteger(n)) {
+        if (n >= 1 && n <= count)
+            return { kind: "existing", index: n - 1 };
+        if (n === count + 1)
+            return { kind: "new" };
+        return { kind: "reprompt" };
+    }
+    return { kind: "typed", value: ans };
+}
+async function pickTopicTty(topics, recommendedTopic = null) {
+    const top = topics.slice(0, 9);
+    const otherIdx = top.length + 1;
+    const recommendedShown = recommendedTopic !== null && top.some((t) => t.topic === recommendedTopic);
+    const rl = createInterface({ input: process.stdin, output: process.stdout });
+    try {
+        console.log("Topic (semantic category) — existing topics in this vault:");
+        top.forEach((t, i) => {
+            const mark = recommendedShown && t.topic === recommendedTopic ? "  ★ recommended" : "";
+            console.log(`  ${i + 1}. ${t.topic} (${t.figmentCount})${mark}`);
+        });
+        console.log(`  ${otherIdx}. (other — type a new topic)`);
+        for (let attempt = 0; attempt < 5; attempt++) {
+            const pick = interpretTopicPick(await rl.question("Pick a number, or type a new topic: "), top.length);
+            if (pick.kind === "existing")
+                return top[pick.index].topic;
+            if (pick.kind === "typed")
+                return pick.value;
+            if (pick.kind === "new") {
+                const free = (await rl.question("New topic: ")).trim();
+                if (free.length > 0)
+                    return free;
+            }
+        }
+        return undefined;
+    }
+    finally {
+        rl.close();
+    }
+}
+export function resolveTopicFolderDir(explicitDir, topicFolder, topic) {
+    if (explicitDir !== undefined)
+        return explicitDir;
+    if (topicFolder === true && topic !== undefined && topic.trim().length > 0) {
+        return `topics/${topicToFolderName(topic)}`;
+    }
+    return undefined;
+}
+export function topicToFolderName(topic) {
+    return (topic
+        .toLowerCase()
+        .replace(/[^a-z0-9]+/g, "-")
+        .replace(/^-+|-+$/g, "")
+        .slice(0, 60)
+        .replace(/-+$/g, "") || "untitled-topic");
+}
 function slugify(title) {
     return (title
         .toLowerCase()

package/dist/commands/capture.js.map

@@ -1 +1 @@
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package/dist/commands/contract.d.ts

@@ -0,0 +1,15 @@
+import { Command } from "commander";
+import { type FrontmatterContractField } from "@younndai/lyt-vault";
+export interface FrontmatterContractJson {
+    contractVersion: number;
+    fields: readonly FrontmatterContractField[];
+    mandatoryTokens: readonly string[];
+    defaults: {
+        "mesh-visibility": string;
+        weight: string;
+    };
+}
+export declare function buildContractJson(): FrontmatterContractJson;
+export declare function renderContractExplain(): string;
+export declare function buildContractCommand(): Command;
+//# sourceMappingURL=contract.d.ts.map

package/dist/commands/contract.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"contract.d.ts","sourceRoot":"","sources":["../../src/commands/contract.ts"],"names":[],"mappings":"AA+BA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC,OAAO,EAML,KAAK,wBAAwB,EAC9B,MAAM,qBAAqB,CAAC;AAQ7B,MAAM,WAAW,uBAAuB;IACtC,eAAe,EAAE,MAAM,CAAC;IACxB,MAAM,EAAE,SAAS,wBAAwB,EAAE,CAAC;IAC5C,eAAe,EAAE,SAAS,MAAM,EAAE,CAAC;IACnC,QAAQ,EAAE;QACR,iBAAiB,EAAE,MAAM,CAAC;QAC1B,MAAM,EAAE,MAAM,CAAC;KAChB,CAAC;CACH;AAGD,wBAAgB,iBAAiB,IAAI,uBAAuB,CAU3D;AAGD,wBAAgB,qBAAqB,IAAI,MAAM,CA6C9C;AAMD,wBAAgB,oBAAoB,IAAI,OAAO,CAkB9C"}

package/dist/commands/contract.js

@@ -0,0 +1,58 @@
+import { Command } from "commander";
+import { FRONTMATTER_CONTRACT, FRONTMATTER_CONTRACT_VERSION, DEFAULT_MESH_VISIBILITY, DEFAULT_WEIGHT, MANDATORY_FRONTMATTER_TOKENS, } from "@younndai/lyt-vault";
+export function buildContractJson() {
+    return {
+        contractVersion: FRONTMATTER_CONTRACT_VERSION,
+        fields: FRONTMATTER_CONTRACT,
+        mandatoryTokens: MANDATORY_FRONTMATTER_TOKENS,
+        defaults: {
+            "mesh-visibility": DEFAULT_MESH_VISIBILITY,
+            weight: DEFAULT_WEIGHT,
+        },
+    };
+}
+export function renderContractExplain() {
+    const lines = [];
+    lines.push(`yai.lyt frontmatter contract — v${FRONTMATTER_CONTRACT_VERSION}`);
+    lines.push("The single Source-of-Truth for user Figment frontmatter (8 fields + meta).");
+    lines.push("");
+    const header = { name: "field", source: "source", def: "default", mand: "mandatory" };
+    const nameW = Math.max(header.name.length, ...FRONTMATTER_CONTRACT.map((f) => f.name.length));
+    const srcW = Math.max(header.source.length, ...FRONTMATTER_CONTRACT.map((f) => f.source.length));
+    const defW = Math.max(header.def.length, ...FRONTMATTER_CONTRACT.map((f) => (f.defaultValue ?? "—").length));
+    const pad = (s, w) => s.padEnd(w);
+    lines.push(`  ${pad(header.name, nameW)}  ${pad(header.source, srcW)}  ${pad(header.def, defW)}  ${header.mand}`);
+    lines.push(`  ${"-".repeat(nameW)}  ${"-".repeat(srcW)}  ${"-".repeat(defW)}  ${"-".repeat(9)}`);
+    for (const f of [...FRONTMATTER_CONTRACT].sort((a, b) => a.order - b.order)) {
+        const def = f.defaultValue ?? "—";
+        const mand = f.mandatory ? "yes" : "no";
+        lines.push(`  ${pad(f.name, nameW)}  ${pad(f.source, srcW)}  ${pad(def, defW)}  ${mand}`);
+    }
+    lines.push("");
+    lines.push("Descriptions:");
+    for (const f of [...FRONTMATTER_CONTRACT].sort((a, b) => a.order - b.order)) {
+        lines.push(`  ${f.name}: ${f.description}`);
+    }
+    lines.push("");
+    lines.push("Rules:");
+    const authorFields = FRONTMATTER_CONTRACT.filter((f) => f.source === "author").map((f) => f.name);
+    lines.push(`  - Author-supplied (prompted if absent, no default): ${authorFields.join(", ")}.`);
+    lines.push(`  - Defaults: mesh-visibility → "${DEFAULT_MESH_VISIBILITY}", weight → "${DEFAULT_WEIGHT}".`);
+    lines.push(`  - Mandatory tokens (validated non-empty): ${MANDATORY_FRONTMATTER_TOKENS.join(", ")}.`);
+    lines.push("  - meta is optional structural overflow for fields the 8 don't cover.");
+    return lines.join("\n");
+}
+export function buildContractCommand() {
+    return new Command("contract")
+        .description("Print the yai.lyt v1 figment frontmatter contract (the machine-readable Source-of-Truth). --json emits the FRONTMATTER_CONTRACT descriptor as a versioned envelope; --explain (default) prints a readable field table + the author-supplied / default / mandatory rules.")
+        .option("--json", "Emit the machine-readable FRONTMATTER_CONTRACT descriptor as JSON")
+        .option("--explain", "Print the readable field table + rules (default human mode)")
+        .action((opts) => {
+        if (opts.json === true) {
+            console.log(JSON.stringify(buildContractJson(), null, 2));
+            return;
+        }
+        console.log(renderContractExplain());
+    });
+}
+//# sourceMappingURL=contract.js.map

package/dist/commands/contract.js.map

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package/dist/commands/reconcile.d.ts

@@ -0,0 +1,3 @@
+import { Command } from "commander";
+export declare function buildReconcileCommand(): Command;
+//# sourceMappingURL=reconcile.d.ts.map

package/dist/commands/reconcile.d.ts.map

@@ -0,0 +1 @@
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package/dist/commands/reconcile.js

@@ -0,0 +1,102 @@
+import { Command } from "commander";
+import { reconcileVaultScan, reindexFlow } from "@younndai/lyt-vault";
+import { runAutomator } from "../automator-run.js";
+function driftCount(scan) {
+    return scan.missingFrontmatter.length + scan.unindexed.length;
+}
+export function buildReconcileCommand() {
+    return new Command("reconcile")
+        .description("Detect (and with --apply, heal) drift between a vault's markdown on disk and its search index: figments with missing frontmatter (→ backfilled) and figments not yet indexed (→ reindexed). Detect-only by default. NOT `lyt repair`.")
+        .argument("<name>", "Vault name to reconcile (must be registered)")
+        .option("--apply", "Heal the detected drift (backfill missing frontmatter, then reindex)")
+        .option("--push", "With --apply, also git-commit + push the backfilled frontmatter (default: local only)")
+        .option("--json", "Emit a JSON result instead of the human-readable summary")
+        .action(async (name, opts) => {
+        const before = await reconcileVaultScan(name);
+        let healed;
+        let after;
+        if (opts.apply === true && driftCount(before) > 0) {
+            let backfilled = false;
+            if (before.missingFrontmatter.length > 0) {
+                let fill;
+                try {
+                    fill = await runAutomator({
+                        automator: "metadata-filler",
+                        vault: name,
+                        ...(opts.push !== true ? { noPush: true } : {}),
+                    });
+                }
+                catch (err) {
+                    emit(opts, before, healed, after, `backfill errored: ${err instanceof Error ? err.message : String(err)}`);
+                    process.exit(1);
+                }
+                if (!fill.ok) {
+                    emit(opts, before, healed, after, `backfill failed: ${fill.errorSummary ?? "unknown"}`);
+                    process.exit(1);
+                }
+                backfilled = true;
+            }
+            await reindexFlow({ scope: "vault", target: name });
+            healed = { backfilled, reindexed: true };
+            after = await reconcileVaultScan(name);
+        }
+        emit(opts, before, healed, after, null);
+    });
+}
+function emit(opts, before, healed, after, errorNote) {
+    const final = after ?? before;
+    const payload = {
+        vault: { name: before.vaultName, path: before.vaultPath },
+        applied: healed !== undefined,
+        index_present: before.indexPresent,
+        before: {
+            scanned: before.scanned,
+            missing_frontmatter: before.missingFrontmatter.length,
+            unindexed: before.unindexed.length,
+            missing_frontmatter_samples: before.missingFrontmatter.slice(0, 20),
+            unindexed_samples: before.unindexed.slice(0, 20),
+        },
+        ...(healed !== undefined
+            ? {
+                healed,
+                after: {
+                    missing_frontmatter: final.missingFrontmatter.length,
+                    unindexed: final.unindexed.length,
+                },
+            }
+            : {}),
+        ...(errorNote !== null ? { error: errorNote } : {}),
+    };
+    if (opts.json === true) {
+        console.log(JSON.stringify(payload, null, 2));
+        return;
+    }
+    const lines = [];
+    lines.push(`reconcile ${before.vaultName} (${before.scanned} figment(s) on disk):`);
+    lines.push(`  missing frontmatter: ${before.missingFrontmatter.length}` +
+        (before.missingFrontmatter.length > 0
+            ? ` — ${before.missingFrontmatter
+                .slice(0, 10)
+                .map((i) => i.relPath)
+                .join(", ")}${before.missingFrontmatter.length > 10 ? " …" : ""}`
+            : ""));
+    lines.push(`  not indexed:         ${before.unindexed.length}` +
+        (before.indexPresent ? "" : " (index not built yet)") +
+        (before.unindexed.length > 0
+            ? ` — ${before.unindexed.slice(0, 10).join(", ")}${before.unindexed.length > 10 ? " …" : ""}`
+            : ""));
+    if (healed !== undefined && after !== undefined) {
+        lines.push(`  → healed: ${healed.backfilled ? "backfilled frontmatter, " : ""}reindexed. ` +
+            `Now: ${after.missingFrontmatter.length} missing frontmatter, ${after.unindexed.length} unindexed.`);
+    }
+    else if (driftCount(before) > 0) {
+        lines.push(`  → run \`lyt vault reconcile '${before.vaultName}' --apply\` to backfill + reindex.`);
+    }
+    else {
+        lines.push("  → disk and index are in sync (nothing to do).");
+    }
+    if (errorNote !== null)
+        lines.push(`  ✗ ${errorNote}`);
+    console.log(lines.join("\n"));
+}
+//# sourceMappingURL=reconcile.js.map

package/dist/commands/reconcile.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@younndai/lyt",
-  "version": "0.9.9",
+  "version": "0.10.0",
   "description": "Lyt — federated markdown-vault mesh CLI. Meta package: pulls in @younndai/lyt-vault + @younndai/lyt-mesh + @younndai/lyt-skills, and ships a unified `lyt` binary.",
   "homepage": "https://linkyourthink.com",
   "repository": {
@@ -52,11 +52,11 @@
   },
   "dependencies": {
     "@libsql/client": "^0.15.15",
-    "@younndai/lyt-mcp": "^0.9.9",
-    "@younndai/lyt-mesh": "^0.9.9",
-    "@younndai/lyt-runner": "^0.9.9",
-    "@younndai/lyt-skills": "^0.9.9",
-    "@younndai/lyt-vault": "^0.9.9",
+    "@younndai/lyt-mcp": "^0.10.0",
+    "@younndai/lyt-mesh": "^0.10.0",
+    "@younndai/lyt-runner": "^0.10.0",
+    "@younndai/lyt-skills": "^0.10.0",
+    "@younndai/lyt-vault": "^0.10.0",
     "commander": "^12.1.0"
   },
   "devDependencies": {