@yeyuan98/opencode-bioresearcher-plugin 1.7.0 → 1.7.1

package/dist/tools/parser/pubmed/utils.js

@@ -1,4 +1,6 @@
-import XLSX from 'xlsx';
+import * as fs from 'fs';
+import * as XLSX from '../../../vendor/xlsx.mjs';
+XLSX.set_fs(fs);
 export function getText(obj) {
     if (obj === null || obj === undefined)
         return null;

package/dist/tools/table/backends/base.d.ts

@@ -0,0 +1,8 @@
+export declare abstract class BaseTableBackend {
+    protected resolvedPath: string;
+    protected force: boolean;
+    constructor(resolvedPath: string, force: boolean);
+    abstract readonly type: string;
+    protected ensureSheetIndex(sheetIndex: number): void;
+    protected resolveSheetName(sheetName: string | undefined, availableNames: string[]): string;
+}

package/dist/tools/table/backends/base.js

@@ -0,0 +1,23 @@
+import { checkFileSize } from '../utils';
+export class BaseTableBackend {
+    resolvedPath;
+    force;
+    constructor(resolvedPath, force) {
+        this.resolvedPath = resolvedPath;
+        this.force = force;
+        checkFileSize(resolvedPath, force);
+    }
+    ensureSheetIndex(sheetIndex) {
+        if (sheetIndex !== 0) {
+            throw new Error('This file format only supports a single sheet (index 0)');
+        }
+    }
+    resolveSheetName(sheetName, availableNames) {
+        if (!sheetName)
+            return availableNames[0];
+        if (!availableNames.includes(sheetName)) {
+            throw new Error(`Sheet "${sheetName}" not found`);
+        }
+        return sheetName;
+    }
+}

package/dist/tools/table/backends/csv/index.d.ts

@@ -0,0 +1,64 @@
+import { BaseTableBackend } from '../base';
+import type { IWritableTableBackend, SheetInfo } from '../interface';
+export declare class CSVBackend extends BaseTableBackend implements IWritableTableBackend {
+    readonly type = "csv";
+    private delimiter;
+    private _headers;
+    private _totalDataRows;
+    constructor(resolvedPath: string, force: boolean);
+    private readHeaders;
+    private countDataRows;
+    listSheets(): SheetInfo[];
+    getHeaders(sheetIndex: number): {
+        headers: string[];
+        columnCount: number;
+    };
+    getTotalDataRows(sheetIndex: number): number;
+    getCell(sheetIndex: number, cellAddress: string): {
+        value: any;
+        type: string;
+    };
+    getRange(sheetIndex: number, range: string): any;
+    getPreview(sheetIndex: number, maxRows: number): {
+        rows: any[][];
+        totalRows: number;
+    };
+    search(sheetIndex: number, searchTerm: string, options: {
+        column?: string;
+        maxResults: number;
+        maxRowsScan: number;
+    }): {
+        results: any[];
+        totalMatchesFound: number;
+        rowsScanned: number;
+    };
+    filterRows(sheetIndex: number, column: string, operator: string, value: any, options: {
+        maxResults: number;
+        maxRowsScan: number;
+    }): {
+        matchedRows: Record<string, any>[];
+        totalMatchesFound: number;
+        totalDataRows: number;
+    };
+    summarize(sheetIndex: number, columns: string[] | undefined, options: {
+        maxRowsScan: number;
+    }): {
+        summaries: Record<string, any>;
+        rowCount: number;
+    };
+    groupBy(sheetIndex: number, groupColumn: string, aggColumn: string, aggType: string, options: {
+        maxRowsScan: number;
+    }): {
+        groups: Record<string, number>;
+    };
+    pivotSummary(sheetIndex: number, rowField: string, colField: string, valueField: string, agg: string, options: {
+        maxRowsScan: number;
+    }): {
+        columns: string[];
+        pivot: Record<string, Record<string, number>>;
+    };
+    appendRows(sheetIndex: number, rows: any[]): void;
+    updateCell(sheetIndex: number, cellAddress: string, value: any): void;
+    createFile(sheetName: string, data: any): void;
+    dispose(): void;
+}