@yeyuan98/opencode-bioresearcher-plugin 1.5.1 → 1.5.2-alpha.2

package/dist/skills/bioresearcher-tests/test_cases/json_tests.md

@@ -1,137 +1,137 @@
-# JSON Tool Tests
-
-## Test: Extract - Simple Object
-- Tool: jsonExtract
-- Input:
-  ```json
-  {"file_path": ".bioresearcher-tests/workspace/json_samples/simple_object.json", "return_all": false}
-  ```
-- Validators:
-  - success_is_true
-  - has data object
-  - data.name === "test"
-  - data.value === 42
-- Expected: Parsed JSON object with name="test", value=42
-
-## Test: Extract - Array
-- Tool: jsonExtract
-- Input:
-  ```json
-  {"file_path": ".bioresearcher-tests/workspace/json_samples/simple_array.json", "return_all": false}
-  ```
-- Validators:
-  - success_is_true
-  - isArray(data)
-  - array_length >= 3
-- Expected: Parsed JSON array [1, 2, 3]
-
-## Test: Extract - Nested Object
-- Tool: jsonExtract
-- Input:
-  ```json
-  {"file_path": ".bioresearcher-tests/workspace/json_samples/nested_object.json", "return_all": false}
-  ```
-- Validators:
-  - success_is_true
-  - has data.nested
-- Expected: Nested object parsed with data.nested.deep
-
-## Test: Extract - From Markdown
-- Tool: jsonExtract
-- Input:
-  ```json
-  {"file_path": ".bioresearcher-tests/workspace/json_samples/in_markdown.md", "return_all": false}
-  ```
-- Validators:
-  - success_is_true
-  - data.embedded === "true"
-  - method === "json_code_block"
-- Expected: JSON extracted from markdown code block
-
-## Test: Extract - Return All
-- Tool: jsonExtract
-- Input:
-  ```json
-  {"file_path": ".bioresearcher-tests/workspace/json_samples/simple_array.json", "return_all": true}
-  ```
-- Validators:
-  - success_is_true
-  - has count
-- Expected: Array with count metadata
-
-## Test: Extract - File Not Found
-- Tool: jsonExtract
-- Input:
-  ```json
-  {"file_path": ".bioresearcher-tests/workspace/nonexistent.json", "return_all": false}
-  ```
-- Validators:
-  - success_is_false
-  - error.code === "FILE_NOT_FOUND"
-- Expected: File not found error
-
-## Test: Validate - Valid Data
-- Tool: jsonValidate
-- Input:
-  ```json
-  {"data": "{\"name\": \"test\", \"value\": 42}", "schema": "{\"type\": \"object\", \"properties\": {\"name\": {\"type\": \"string\"}, \"value\": {\"type\": \"number\"}}, \"required\": [\"name\"]}"}
-  ```
-- Validators:
-  - success_is_true
-  - valid === true OR has data
-- Expected: Validation passes
-
-## Test: Validate - Invalid Data
-- Tool: jsonValidate
-- Input:
-  ```json
-  {"data": "{\"name\": 123}", "schema": "{\"type\": \"object\", \"properties\": {\"name\": {\"type\": \"string\"}}, \"required\": [\"name\"]}"}
-  ```
-- Validators:
-  - success_is_true
-  - has errors
-- Expected: Validation errors (name should be string)
-
-## Test: Validate - From Schema File
-- Tool: jsonValidate
-- Input:
-  ```json
-  {"data": "{\"name\": \"test\", \"value\": 42}", "schema": ".bioresearcher-tests/workspace/json_samples/schema_draft7.json"}
-  ```
-- Validators:
-  - success_is_true
-- Expected: Schema loaded from file and validation passes
-
-## Test: Infer - Object
-- Tool: jsonInfer
-- Input:
-  ```json
-  {"data": "{\"name\": \"test\", \"count\": 5, \"active\": true}", "strict": false}
-  ```
-- Validators:
-  - success_is_true
-  - has data object
-  - inferredType === "object"
-- Expected: JSON Schema inferred for object
-
-## Test: Infer - Array
-- Tool: jsonInfer
-- Input:
-  ```json
-  {"data": "[1, 2, 3, 4, 5]", "strict": false}
-  ```
-- Validators:
-  - success_is_true
-  - inferredType === "array"
-- Expected: Array schema inferred
-
-## Test: Infer - Strict Mode
-- Tool: jsonInfer
-- Input:
-  ```json
-  {"data": "{\"name\": \"test\"}", "strict": true}
-  ```
-- Validators:
-  - success_is_true
-  - strictMode === "true"
-- Expected: Schema with required fields
+# JSON Tool Tests
+
+## Test: Extract - Simple Object
+- Tool: jsonExtract
+- Input:
+  ```json
+  {"file_path": ".bioresearcher-tests/workspace/json_samples/simple_object.json", "return_all": false}
+  ```
+- Validators:
+  - success_is_true
+  - has data object
+  - data.name === "test"
+  - data.value === 42
+- Expected: Parsed JSON object with name="test", value=42
+
+## Test: Extract - Array
+- Tool: jsonExtract
+- Input:
+  ```json
+  {"file_path": ".bioresearcher-tests/workspace/json_samples/simple_array.json", "return_all": false}
+  ```
+- Validators:
+  - success_is_true
+  - isArray(data)
+  - array_length >= 3
+- Expected: Parsed JSON array [1, 2, 3]
+
+## Test: Extract - Nested Object
+- Tool: jsonExtract
+- Input:
+  ```json
+  {"file_path": ".bioresearcher-tests/workspace/json_samples/nested_object.json", "return_all": false}
+  ```
+- Validators:
+  - success_is_true
+  - has data.nested
+- Expected: Nested object parsed with data.nested.deep
+
+## Test: Extract - From Markdown
+- Tool: jsonExtract
+- Input:
+  ```json
+  {"file_path": ".bioresearcher-tests/workspace/json_samples/in_markdown.md", "return_all": false}
+  ```
+- Validators:
+  - success_is_true
+  - data.embedded === "true"
+  - method === "json_code_block"
+- Expected: JSON extracted from markdown code block
+
+## Test: Extract - Return All
+- Tool: jsonExtract
+- Input:
+  ```json
+  {"file_path": ".bioresearcher-tests/workspace/json_samples/simple_array.json", "return_all": true}
+  ```
+- Validators:
+  - success_is_true
+  - has count
+- Expected: Array with count metadata
+
+## Test: Extract - File Not Found
+- Tool: jsonExtract
+- Input:
+  ```json
+  {"file_path": ".bioresearcher-tests/workspace/nonexistent.json", "return_all": false}
+  ```
+- Validators:
+  - success_is_false
+  - error.code === "FILE_NOT_FOUND"
+- Expected: File not found error
+
+## Test: Validate - Valid Data
+- Tool: jsonValidate
+- Input:
+  ```json
+  {"data": "{\"name\": \"test\", \"value\": 42}", "schema": "{\"type\": \"object\", \"properties\": {\"name\": {\"type\": \"string\"}, \"value\": {\"type\": \"number\"}}, \"required\": [\"name\"]}"}
+  ```
+- Validators:
+  - success_is_true
+  - valid === true OR has data
+- Expected: Validation passes
+
+## Test: Validate - Invalid Data
+- Tool: jsonValidate
+- Input:
+  ```json
+  {"data": "{\"name\": 123}", "schema": "{\"type\": \"object\", \"properties\": {\"name\": {\"type\": \"string\"}}, \"required\": [\"name\"]}"}
+  ```
+- Validators:
+  - success_is_true
+  - has errors
+- Expected: Validation errors (name should be string)
+
+## Test: Validate - From Schema File
+- Tool: jsonValidate
+- Input:
+  ```json
+  {"data": "{\"name\": \"test\", \"value\": 42}", "schema": ".bioresearcher-tests/workspace/json_samples/schema_draft7.json"}
+  ```
+- Validators:
+  - success_is_true
+- Expected: Schema loaded from file and validation passes
+
+## Test: Infer - Object
+- Tool: jsonInfer
+- Input:
+  ```json
+  {"data": "{\"name\": \"test\", \"count\": 5, \"active\": true}", "strict": false}
+  ```
+- Validators:
+  - success_is_true
+  - has data object
+  - inferredType === "object"
+- Expected: JSON Schema inferred for object
+
+## Test: Infer - Array
+- Tool: jsonInfer
+- Input:
+  ```json
+  {"data": "[1, 2, 3, 4, 5]", "strict": false}
+  ```
+- Validators:
+  - success_is_true
+  - inferredType === "array"
+- Expected: Array schema inferred
+
+## Test: Infer - Strict Mode
+- Tool: jsonInfer
+- Input:
+  ```json
+  {"data": "{\"name\": \"test\"}", "strict": true}
+  ```
+- Validators:
+  - success_is_true
+  - strictMode === "true"
+- Expected: Schema with required fields

package/dist/skills/bioresearcher-tests/test_cases/misc_tests.md

@@ -1,141 +1,141 @@
-# Miscellaneous Tool Tests
-
-## Test: Timer - Short Delay
-- Tool: blockingTimer
-- Input:
-  ```json
-  {"delay": 1}
-  ```
-- Validators:
-  - contains_string("Timer completed")
-  - contains_string("1 seconds")
-- Expected: Timer completed message after 1 second
-
-## Test: Timer - Zero Delay
-- Tool: blockingTimer
-- Input:
-  ```json
-  {"delay": 0}
-  ```
-- Validators:
-  - contains_string("Timer completed")
-- Expected: Immediate completion
-
-## Test: Timer - Max Exceeded
-- Tool: blockingTimer
-- Input:
-  ```json
-  {"delay": 301}
-  ```
-- Validators:
-  - contains_string("300")
-  - contains_string("NOT exceed")
-- Expected: Error about max delay exceeded
-
-## Test: Calculator - Basic Arithmetic
-- Tool: calculator
-- Input:
-  ```json
-  {"formula": "2 + 3 * 4", "precision": 3}
-  ```
-- Validators:
-  - has result
-  - result === 14
-- Expected: 14 (order of operations: 3*4=12, 2+12=14)
-
-## Test: Calculator - Power
-- Tool: calculator
-- Input:
-  ```json
-  {"formula": "2 ^ 10", "precision": 0}
-  ```
-- Validators:
-  - has result
-  - result === 1024
-- Expected: 1024 (2 to power of 10)
-
-## Test: Calculator - Brackets
-- Tool: calculator
-- Input:
-  ```json
-  {"formula": "(2 + 3) * 4", "precision": 3}
-  ```
-- Validators:
-  - has result
-  - result === 20
-- Expected: 20 (brackets first: 5*4=20)
-
-## Test: Calculator - Scientific Notation
-- Tool: calculator
-- Input:
-  ```json
-  {"formula": "1e3 + 500", "precision": 3}
-  ```
-- Validators:
-  - has result
-  - result === 1500
-- Expected: 1500 (1000 + 500)
-
-## Test: Calculator - Division by Zero
-- Tool: calculator
-- Input:
-  ```json
-  {"formula": "1 / 0", "precision": 3}
-  ```
-- Validators:
-  - contains_string("CALCULATOR ERROR")
-- Expected: Error about division by zero
-
-## Test: Calculator - Invalid Syntax
-- Tool: calculator
-- Input:
-  ```json
-  {"formula": "2(3)", "precision": 3}
-  ```
-- Validators:
-  - contains_string("CALCULATOR ERROR")
-  - contains_string("parentheses")
-- Expected: Error about implicit multiplication not allowed
-
-## Test: Calculator - Precision
-- Tool: calculator
-- Input:
-  ```json
-  {"formula": "10 / 3", "precision": 2}
-  ```
-- Validators:
-  - has result
-  - result === 3.33
-- Expected: 3.33 (2 decimal places)
-
-## Test: Timer - Exact Boundary
-- Tool: blockingTimer
-- Input:
-  ```json
-  {"delay": 300}
-  ```
-- Validators:
-  - contains_string("Timer completed")
-- Expected: Timer completes at exact max boundary (300s)
-
-## Test: Calculator - Empty Formula
-- Tool: calculator
-- Input:
-  ```json
-  {"formula": "", "precision": 3}
-  ```
-- Validators:
-  - contains_string("CALCULATOR ERROR")
-  - contains_string("empty")
-- Expected: Error about empty formula
-
-## Test: Calculator - Invalid Characters
-- Tool: calculator
-- Input:
-  ```json
-  {"formula": "2 + abc", "precision": 3}
-  ```
-- Validators:
-  - contains_string("CALCULATOR ERROR")
-  - contains_string("invalid characters")
-- Expected: Error about invalid characters
+# Miscellaneous Tool Tests
+
+## Test: Timer - Short Delay
+- Tool: blockingTimer
+- Input:
+  ```json
+  {"delay": 1}
+  ```
+- Validators:
+  - contains_string("Timer completed")
+  - contains_string("1 seconds")
+- Expected: Timer completed message after 1 second
+
+## Test: Timer - Zero Delay
+- Tool: blockingTimer
+- Input:
+  ```json
+  {"delay": 0}
+  ```
+- Validators:
+  - contains_string("Timer completed")
+- Expected: Immediate completion
+
+## Test: Timer - Max Exceeded
+- Tool: blockingTimer
+- Input:
+  ```json
+  {"delay": 301}
+  ```
+- Validators:
+  - contains_string("300")
+  - contains_string("NOT exceed")
+- Expected: Error about max delay exceeded
+
+## Test: Calculator - Basic Arithmetic
+- Tool: calculator
+- Input:
+  ```json
+  {"formula": "2 + 3 * 4", "precision": 3}
+  ```
+- Validators:
+  - has result
+  - result === 14
+- Expected: 14 (order of operations: 3*4=12, 2+12=14)
+
+## Test: Calculator - Power
+- Tool: calculator
+- Input:
+  ```json
+  {"formula": "2 ^ 10", "precision": 0}
+  ```
+- Validators:
+  - has result
+  - result === 1024
+- Expected: 1024 (2 to power of 10)
+
+## Test: Calculator - Brackets
+- Tool: calculator
+- Input:
+  ```json
+  {"formula": "(2 + 3) * 4", "precision": 3}
+  ```
+- Validators:
+  - has result
+  - result === 20
+- Expected: 20 (brackets first: 5*4=20)
+
+## Test: Calculator - Scientific Notation
+- Tool: calculator
+- Input:
+  ```json
+  {"formula": "1e3 + 500", "precision": 3}
+  ```
+- Validators:
+  - has result
+  - result === 1500
+- Expected: 1500 (1000 + 500)
+
+## Test: Calculator - Division by Zero
+- Tool: calculator
+- Input:
+  ```json
+  {"formula": "1 / 0", "precision": 3}
+  ```
+- Validators:
+  - contains_string("CALCULATOR ERROR")
+- Expected: Error about division by zero
+
+## Test: Calculator - Invalid Syntax
+- Tool: calculator
+- Input:
+  ```json
+  {"formula": "2(3)", "precision": 3}
+  ```
+- Validators:
+  - contains_string("CALCULATOR ERROR")
+  - contains_string("parentheses")
+- Expected: Error about implicit multiplication not allowed
+
+## Test: Calculator - Precision
+- Tool: calculator
+- Input:
+  ```json
+  {"formula": "10 / 3", "precision": 2}
+  ```
+- Validators:
+  - has result
+  - result === 3.33
+- Expected: 3.33 (2 decimal places)
+
+## Test: Timer - Exact Boundary
+- Tool: blockingTimer
+- Input:
+  ```json
+  {"delay": 300}
+  ```
+- Validators:
+  - contains_string("Timer completed")
+- Expected: Timer completes at exact max boundary (300s)
+
+## Test: Calculator - Empty Formula
+- Tool: calculator
+- Input:
+  ```json
+  {"formula": "", "precision": 3}
+  ```
+- Validators:
+  - contains_string("CALCULATOR ERROR")
+  - contains_string("empty")
+- Expected: Error about empty formula
+
+## Test: Calculator - Invalid Characters
+- Tool: calculator
+- Input:
+  ```json
+  {"formula": "2 + abc", "precision": 3}
+  ```
+- Validators:
+  - contains_string("CALCULATOR ERROR")
+  - contains_string("invalid characters")
+- Expected: Error about invalid characters