@yeyuan98/opencode-bioresearcher-plugin 1.2.2 → 1.2.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +61 -5
- package/package.json +1 -1
package/README.md
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# BioResearcher Plugin
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OpenCode plugin that adds
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OpenCode plugin that adds agents and tools for biomedical and pharmaceutical research.
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## Overview
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No nonsense and powerful.
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No nonsense and powerful. Agents and tools that just work for your typical biomedical and pharmaceutical research needs.
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Tab to activate
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Tab to activate and start asking right away:
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- The **Bioresearcher Agent** is jack-of-all-trades.
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- The **BioresearcherDR Agent** is a specialist for biomed/pharma deep research (DR).
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## Agents
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### BioresearcherDR
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By default, it will conduct **highly detailed and in-depth** research, easily surpassing all general purpose LLM applications.
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light-research Significance of KRAS for cancer?
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```
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To skip the Question-Clarification cycle, prompt your question with `no-interview`:
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```text
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no-interview light-research Significance of KRAS for cancer?
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```
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## Tools
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### Table Tools
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Manipulate Excel, CSV, and ODS files with precision and smart parsing for dates, numbers, and data types.
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**Enable LLMs to wrangle huge tables WITHOUT overwhelming model context.**
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```text
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What are tools for table processing?
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What are column names in XXX.xlsx?
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Analyze XXX.xlsx - group by Y column, and report unique values of Z column.
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```
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### Calculator
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Evaluate mathematical expressions with full support for brackets, powers, and scientific notation.
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**Make your model accurate with numbers. No more 3.11 > 3.9 nor 1+2=5.**
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```text
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Use the calculator tool: (3+1.5*6-1/2)^3
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```
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### Blocking Timer
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Pause execution for testing or pacing operations.
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**Respect API rate limits. No more IP bans/blocks.**
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```text
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Query XXX API. You MUST include a 0.5 second delay between two API calls with the blockingTimer tool.
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```
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### PubMed Parser
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Parse PubMed XML files to markdown or Excel format. Supports `.xml` and `.xml.gz` files.
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**Analyze years of publication articles in one go. Simple and powerful.**
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```text
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Download pubmed article data from https://ftp.ncbi.nlm.nih.gov/pubmed/updatefiles/pubmed26n1340.xml.gz and parse to Excel format.
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```
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Reference: [PubMed Download Data](https://pubmed.ncbi.nlm.nih.gov/download/).
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## Installation
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## License
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CC BY-NC-ND 4.0
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