@yawlabs/ctxlint 0.2.2 → 0.4.0

package/dist/mcp/server.js

@@ -93,43 +93,76 @@ function getAllProjectFiles(projectRoot) {
 
 // src/core/scanner.ts
 var CONTEXT_FILE_PATTERNS = [
+  // Claude Code
   "CLAUDE.md",
   "CLAUDE.local.md",
+  ".claude/rules/*.md",
+  // AGENTS.md (AAIF / Linux Foundation standard)
   "AGENTS.md",
+  "AGENT.md",
+  "AGENTS.override.md",
+  // Cursor
   ".cursorrules",
   ".cursor/rules/*.md",
   ".cursor/rules/*.mdc",
-  "copilot-instructions.md",
+  ".cursor/rules/*/RULE.md",
+  // GitHub Copilot
   ".github/copilot-instructions.md",
   ".github/instructions/*.md",
+  ".github/git-commit-instructions.md",
+  // Windsurf
   ".windsurfrules",
   ".windsurf/rules/*.md",
+  // Gemini CLI
   "GEMINI.md",
-  "JULES.md",
+  // Cline
   ".clinerules",
-  "CONVENTIONS.md",
-  "CODEX.md",
+  // Aider — note: .aiderules has no file extension; this is the intended format
   ".aiderules",
+  // Aide / Codestory
   ".aide/rules/*.md",
+  // Amazon Q Developer
   ".amazonq/rules/*.md",
-  ".goose/instructions.md"
+  // Goose (Block)
+  ".goose/instructions.md",
+  ".goosehints",
+  // JetBrains Junie
+  ".junie/guidelines.md",
+  ".junie/AGENTS.md",
+  // JetBrains AI Assistant
+  ".aiassistant/rules/*.md",
+  // Continue
+  ".continuerules",
+  ".continue/rules/*.md",
+  // Zed
+  ".rules",
+  // Replit
+  "replit.md"
 ];
 var IGNORED_DIRS2 = /* @__PURE__ */ new Set(["node_modules", ".git", "dist", "build", "vendor"]);
-async function scanForContextFiles(projectRoot) {
+async function scanForContextFiles(projectRoot, options = {}) {
+  const maxDepth = options.depth ?? 2;
+  const patterns = [...CONTEXT_FILE_PATTERNS, ...options.extraPatterns || []];
   const found = [];
   const seen = /* @__PURE__ */ new Set();
   const dirsToScan = [projectRoot];
-  try {
-    const entries = fs2.readdirSync(projectRoot, { withFileTypes: true });
-    for (const entry of entries) {
-      if (entry.isDirectory() && !IGNORED_DIRS2.has(entry.name) && !entry.name.startsWith(".")) {
-        dirsToScan.push(path2.join(projectRoot, entry.name));
+  function collectDirs(dir, currentDepth) {
+    if (currentDepth >= maxDepth) return;
+    try {
+      const entries = fs2.readdirSync(dir, { withFileTypes: true });
+      for (const entry of entries) {
+        if (entry.isDirectory() && !IGNORED_DIRS2.has(entry.name) && !entry.name.startsWith(".")) {
+          const fullPath = path2.join(dir, entry.name);
+          dirsToScan.push(fullPath);
+          collectDirs(fullPath, currentDepth + 1);
+        }
       }
+    } catch {
     }
-  } catch {
   }
+  collectDirs(projectRoot, 0);
   for (const dir of dirsToScan) {
-    for (const pattern of CONTEXT_FILE_PATTERNS) {
+    for (const pattern of patterns) {
       const matches = await glob(pattern, {
         cwd: dir,
         absolute: true,
@@ -567,6 +600,7 @@ import * as fs3 from "fs";
 import * as path4 from "path";
 var NPM_SCRIPT_PATTERN = /^(?:npm\s+run|pnpm(?:\s+run)?|yarn(?:\s+run)?|bun(?:\s+run)?)\s+(\S+)/;
 var MAKE_PATTERN = /^make\s+(\S+)/;
+var NPX_PATTERN = /^npx\s+(\S+)/;
 async function checkCommands(file, projectRoot) {
   const issues = [];
   const pkgJson = loadPackageJson(projectRoot);
@@ -588,7 +622,9 @@ async function checkCommands(file, projectRoot) {
       }
       continue;
     }
-    const shorthandMatch = cmd.match(/^(npm|pnpm|yarn|bun)\s+(test|start|build|dev|lint|format|check|typecheck|clean|serve|preview|e2e)\b/);
+    const shorthandMatch = cmd.match(
+      /^(npm|pnpm|yarn|bun)\s+(test|start|build|dev|lint|format|check|typecheck|clean|serve|preview|e2e)\b/
+    );
     if (shorthandMatch && pkgJson) {
       const scriptName = shorthandMatch[2];
       if (pkgJson.scripts && !(scriptName in pkgJson.scripts)) {
@@ -601,6 +637,30 @@ async function checkCommands(file, projectRoot) {
       }
       continue;
     }
+    const npxMatch = cmd.match(NPX_PATTERN);
+    if (npxMatch && pkgJson) {
+      const pkgName = npxMatch[1];
+      if (pkgName.startsWith("-")) continue;
+      const allDeps = {
+        ...pkgJson.dependencies,
+        ...pkgJson.devDependencies
+      };
+      if (!(pkgName in allDeps)) {
+        const binPath = path4.join(projectRoot, "node_modules", ".bin", pkgName);
+        try {
+          fs3.accessSync(binPath);
+        } catch {
+          issues.push({
+            severity: "warning",
+            check: "commands",
+            line: ref.line,
+            message: `"${cmd}" \u2014 "${pkgName}" not found in dependencies`,
+            suggestion: "If this is a global tool, consider adding it to devDependencies for reproducibility"
+          });
+        }
+      }
+      continue;
+    }
     const makeMatch = cmd.match(MAKE_PATTERN);
     if (makeMatch) {
       const target = makeMatch[1];
@@ -813,6 +873,26 @@ var PACKAGE_TECH_MAP = {
   cypress: ["Cypress"],
   puppeteer: ["Puppeteer"]
 };
+function compilePatterns(allDeps) {
+  const compiled = [];
+  for (const [pkg, mentions] of Object.entries(PACKAGE_TECH_MAP)) {
+    if (!allDeps.has(pkg)) continue;
+    for (const mention of mentions) {
+      const escaped = escapeRegex(mention);
+      compiled.push({
+        pkg,
+        mention,
+        patterns: [
+          new RegExp(`\\b(?:use|using|built with|powered by|written in)\\s+${escaped}\\b`, "i"),
+          new RegExp(`\\bwe\\s+use\\s+${escaped}\\b`, "i"),
+          new RegExp(`\\b${escaped}\\s+(?:project|app|application|codebase)\\b`, "i"),
+          new RegExp(`\\bThis is a\\s+${escaped}\\b`, "i")
+        ]
+      });
+    }
+  }
+  return compiled;
+}
 async function checkRedundancy(file, projectRoot) {
   const issues = [];
   const pkgJson = loadPackageJson(projectRoot);
@@ -821,38 +901,28 @@ async function checkRedundancy(file, projectRoot) {
       ...Object.keys(pkgJson.dependencies || {}),
       ...Object.keys(pkgJson.devDependencies || {})
     ]);
+    const compiledPatterns = compilePatterns(allDeps);
     const lines2 = file.content.split("\n");
     for (let i = 0; i < lines2.length; i++) {
       const line = lines2[i];
-      for (const [pkg, mentions] of Object.entries(PACKAGE_TECH_MAP)) {
-        if (!allDeps.has(pkg)) continue;
-        for (const mention of mentions) {
-          const patterns = [
-            new RegExp(
-              `\\b(?:use|using|built with|powered by|written in)\\s+${escapeRegex(mention)}\\b`,
-              "i"
-            ),
-            new RegExp(`\\bwe\\s+use\\s+${escapeRegex(mention)}\\b`, "i"),
-            new RegExp(
-              `\\b${escapeRegex(mention)}\\s+(?:project|app|application|codebase)\\b`,
-              "i"
-            ),
-            new RegExp(`\\bThis is a\\s+${escapeRegex(mention)}\\b`, "i")
-          ];
-          for (const pattern of patterns) {
-            if (pattern.test(line)) {
-              const wastedTokens = countTokens(line.trim());
-              issues.push({
-                severity: "info",
-                check: "redundancy",
-                line: i + 1,
-                message: `"${mention}" is in package.json ${pkgJson.dependencies?.[pkg] ? "dependencies" : "devDependencies"} \u2014 agent can infer this`,
-                suggestion: `~${wastedTokens} tokens could be saved`
-              });
-              break;
-            }
+      for (const { pkg, mention, patterns } of compiledPatterns) {
+        let matched = false;
+        for (const pattern of patterns) {
+          if (pattern.test(line)) {
+            matched = true;
+            break;
           }
         }
+        if (matched) {
+          const wastedTokens = countTokens(line.trim());
+          issues.push({
+            severity: "info",
+            check: "redundancy",
+            line: i + 1,
+            message: `"${mention}" is in package.json ${pkgJson.dependencies?.[pkg] ? "dependencies" : "devDependencies"} \u2014 agent can infer this`,
+            suggestion: `~${wastedTokens} tokens could be saved`
+          });
+        }
       }
     }
   }
@@ -914,6 +984,523 @@ function escapeRegex(str) {
   return str.replace(/[.*+?^${}()|[\]\\]/g, "\\$&");
 }
 
+// src/core/checks/contradictions.ts
+var DIRECTIVE_CATEGORIES = [
+  {
+    name: "testing framework",
+    options: [
+      {
+        label: "Jest",
+        patterns: [/\buse\s+jest\b/i, /\bjest\s+for\s+test/i, /\btest.*with\s+jest\b/i]
+      },
+      {
+        label: "Vitest",
+        patterns: [/\buse\s+vitest\b/i, /\bvitest\s+for\s+test/i, /\btest.*with\s+vitest\b/i]
+      },
+      {
+        label: "Mocha",
+        patterns: [/\buse\s+mocha\b/i, /\bmocha\s+for\s+test/i, /\btest.*with\s+mocha\b/i]
+      },
+      {
+        label: "pytest",
+        patterns: [/\buse\s+pytest\b/i, /\bpytest\s+for\s+test/i, /\btest.*with\s+pytest\b/i]
+      },
+      {
+        label: "Playwright",
+        patterns: [/\buse\s+playwright\b/i, /\bplaywright\s+for\s+(?:e2e|test)/i]
+      },
+      { label: "Cypress", patterns: [/\buse\s+cypress\b/i, /\bcypress\s+for\s+(?:e2e|test)/i] }
+    ]
+  },
+  {
+    name: "package manager",
+    options: [
+      {
+        label: "npm",
+        patterns: [
+          /\buse\s+npm\b/i,
+          /\bnpm\s+as\s+(?:the\s+)?package\s+manager/i,
+          /\balways\s+use\s+npm\b/i
+        ]
+      },
+      {
+        label: "pnpm",
+        patterns: [
+          /\buse\s+pnpm\b/i,
+          /\bpnpm\s+as\s+(?:the\s+)?package\s+manager/i,
+          /\balways\s+use\s+pnpm\b/i
+        ]
+      },
+      {
+        label: "yarn",
+        patterns: [
+          /\buse\s+yarn\b/i,
+          /\byarn\s+as\s+(?:the\s+)?package\s+manager/i,
+          /\balways\s+use\s+yarn\b/i
+        ]
+      },
+      {
+        label: "bun",
+        patterns: [
+          /\buse\s+bun\b/i,
+          /\bbun\s+as\s+(?:the\s+)?package\s+manager/i,
+          /\balways\s+use\s+bun\b/i
+        ]
+      }
+    ]
+  },
+  {
+    name: "indentation style",
+    options: [
+      {
+        label: "tabs",
+        patterns: [/\buse\s+tabs\b/i, /\btab\s+indentation\b/i, /\bindent\s+with\s+tabs\b/i]
+      },
+      {
+        label: "2 spaces",
+        patterns: [
+          /\b2[\s-]?space\s+indent/i,
+          /\bindent\s+with\s+2\s+spaces/i,
+          /\b2[\s-]?space\s+tabs?\b/i
+        ]
+      },
+      {
+        label: "4 spaces",
+        patterns: [
+          /\b4[\s-]?space\s+indent/i,
+          /\bindent\s+with\s+4\s+spaces/i,
+          /\b4[\s-]?space\s+tabs?\b/i
+        ]
+      }
+    ]
+  },
+  {
+    name: "semicolons",
+    options: [
+      {
+        label: "semicolons",
+        patterns: [
+          /\buse\s+semicolons\b/i,
+          /\balways\s+(?:use\s+)?semicolons\b/i,
+          /\bsemicolons:\s*(?:true|yes)\b/i
+        ]
+      },
+      {
+        label: "no semicolons",
+        patterns: [
+          /\bno\s+semicolons\b/i,
+          /\bavoid\s+semicolons\b/i,
+          /\bomit\s+semicolons\b/i,
+          /\bsemicolons:\s*(?:false|no)\b/i
+        ]
+      }
+    ]
+  },
+  {
+    name: "quote style",
+    options: [
+      {
+        label: "single quotes",
+        patterns: [
+          /\bsingle\s+quotes?\b/i,
+          /\buse\s+(?:single\s+)?['']single['']?\s+quotes?\b/i,
+          /\bprefer\s+single\s+quotes?\b/i
+        ]
+      },
+      {
+        label: "double quotes",
+        patterns: [
+          /\bdouble\s+quotes?\b/i,
+          /\buse\s+(?:double\s+)?[""]double[""]?\s+quotes?\b/i,
+          /\bprefer\s+double\s+quotes?\b/i
+        ]
+      }
+    ]
+  },
+  {
+    name: "naming convention",
+    options: [
+      {
+        label: "camelCase",
+        patterns: [/\bcamelCase\b/, /\bcamel[\s-]?case\s+(?:for|naming|convention)/i]
+      },
+      {
+        label: "snake_case",
+        patterns: [/\bsnake_case\b/, /\bsnake[\s-]?case\s+(?:for|naming|convention)/i]
+      },
+      {
+        label: "PascalCase",
+        patterns: [/\bPascalCase\b/, /\bpascal[\s-]?case\s+(?:for|naming|convention)/i]
+      },
+      {
+        label: "kebab-case",
+        patterns: [/\bkebab-case\b/, /\bkebab[\s-]?case\s+(?:for|naming|convention)/i]
+      }
+    ]
+  },
+  {
+    name: "CSS approach",
+    options: [
+      { label: "Tailwind", patterns: [/\buse\s+tailwind/i, /\btailwind\s+for\s+styl/i] },
+      {
+        label: "CSS Modules",
+        patterns: [/\buse\s+css\s+modules\b/i, /\bcss\s+modules\s+for\s+styl/i]
+      },
+      {
+        label: "styled-components",
+        patterns: [/\buse\s+styled[\s-]?components\b/i, /\bstyled[\s-]?components\s+for\s+styl/i]
+      },
+      { label: "CSS-in-JS", patterns: [/\buse\s+css[\s-]?in[\s-]?js\b/i] }
+    ]
+  },
+  {
+    name: "state management",
+    options: [
+      { label: "Redux", patterns: [/\buse\s+redux\b/i, /\bredux\s+for\s+state/i] },
+      { label: "Zustand", patterns: [/\buse\s+zustand\b/i, /\bzustand\s+for\s+state/i] },
+      { label: "MobX", patterns: [/\buse\s+mobx\b/i, /\bmobx\s+for\s+state/i] },
+      { label: "Jotai", patterns: [/\buse\s+jotai\b/i, /\bjotai\s+for\s+state/i] },
+      { label: "Recoil", patterns: [/\buse\s+recoil\b/i, /\brecoil\s+for\s+state/i] }
+    ]
+  }
+];
+function detectDirectives(file) {
+  const directives = [];
+  const lines = file.content.split("\n");
+  for (let i = 0; i < lines.length; i++) {
+    const line = lines[i];
+    for (const category of DIRECTIVE_CATEGORIES) {
+      for (const option of category.options) {
+        for (const pattern of option.patterns) {
+          if (pattern.test(line)) {
+            directives.push({
+              file: file.relativePath,
+              category: category.name,
+              label: option.label,
+              line: i + 1,
+              text: line.trim()
+            });
+            break;
+          }
+        }
+      }
+    }
+  }
+  return directives;
+}
+function checkContradictions(files) {
+  if (files.length < 2) return [];
+  const issues = [];
+  const allDirectives = [];
+  for (const file of files) {
+    allDirectives.push(...detectDirectives(file));
+  }
+  const byCategory = /* @__PURE__ */ new Map();
+  for (const d of allDirectives) {
+    const existing = byCategory.get(d.category) || [];
+    existing.push(d);
+    byCategory.set(d.category, existing);
+  }
+  for (const [category, directives] of byCategory) {
+    const byFile = /* @__PURE__ */ new Map();
+    for (const d of directives) {
+      const existing = byFile.get(d.file) || [];
+      existing.push(d);
+      byFile.set(d.file, existing);
+    }
+    const labels = new Set(directives.map((d) => d.label));
+    if (labels.size <= 1) continue;
+    const fileLabels = /* @__PURE__ */ new Map();
+    for (const d of directives) {
+      const existing = fileLabels.get(d.file) || /* @__PURE__ */ new Set();
+      existing.add(d.label);
+      fileLabels.set(d.file, existing);
+    }
+    const fileEntries = [...fileLabels.entries()];
+    for (let i = 0; i < fileEntries.length; i++) {
+      for (let j = i + 1; j < fileEntries.length; j++) {
+        const [fileA, labelsA] = fileEntries[i];
+        const [fileB, labelsB] = fileEntries[j];
+        for (const labelA of labelsA) {
+          for (const labelB of labelsB) {
+            if (labelA !== labelB) {
+              const directiveA = directives.find((d) => d.file === fileA && d.label === labelA);
+              const directiveB = directives.find((d) => d.file === fileB && d.label === labelB);
+              issues.push({
+                severity: "warning",
+                check: "contradictions",
+                line: directiveA.line,
+                message: `${category} conflict: "${directiveA.label}" in ${fileA} vs "${directiveB.label}" in ${fileB}`,
+                suggestion: `Align on one ${category} across all context files`,
+                detail: `${fileA}:${directiveA.line} says "${directiveA.text}" but ${fileB}:${directiveB.line} says "${directiveB.text}"`
+              });
+            }
+          }
+        }
+      }
+    }
+  }
+  return issues;
+}
+
+// src/core/checks/frontmatter.ts
+function parseFrontmatter(content) {
+  const lines = content.split("\n");
+  if (lines[0]?.trim() !== "---") {
+    return { found: false, fields: {}, endLine: 0 };
+  }
+  const fields = {};
+  let endLine = 0;
+  for (let i = 1; i < lines.length; i++) {
+    const line = lines[i].trim();
+    if (line === "---") {
+      endLine = i + 1;
+      break;
+    }
+    const match = line.match(/^(\w+)\s*:\s*(.*)$/);
+    if (match) {
+      fields[match[1]] = match[2].trim();
+    }
+  }
+  if (endLine === 0) {
+    return { found: true, fields, endLine: lines.length };
+  }
+  return { found: true, fields, endLine };
+}
+function isCursorMdc(file) {
+  return file.relativePath.endsWith(".mdc");
+}
+function isCopilotInstructions(file) {
+  return file.relativePath.includes(".github/instructions/") && file.relativePath.endsWith(".md");
+}
+function isWindsurfRule(file) {
+  return file.relativePath.includes(".windsurf/rules/") && file.relativePath.endsWith(".md");
+}
+var VALID_WINDSURF_TRIGGERS = ["always_on", "glob", "manual", "model"];
+async function checkFrontmatter(file, _projectRoot) {
+  const issues = [];
+  if (isCursorMdc(file)) {
+    issues.push(...validateCursorMdc(file));
+  } else if (isCopilotInstructions(file)) {
+    issues.push(...validateCopilotInstructions(file));
+  } else if (isWindsurfRule(file)) {
+    issues.push(...validateWindsurfRule(file));
+  }
+  return issues;
+}
+function validateCursorMdc(file) {
+  const issues = [];
+  const fm = parseFrontmatter(file.content);
+  if (!fm.found) {
+    issues.push({
+      severity: "warning",
+      check: "frontmatter",
+      line: 1,
+      message: "Cursor .mdc file is missing frontmatter",
+      suggestion: "Add YAML frontmatter with description, globs, and alwaysApply fields"
+    });
+    return issues;
+  }
+  if (!fm.fields["description"]) {
+    issues.push({
+      severity: "warning",
+      check: "frontmatter",
+      line: 1,
+      message: 'Missing "description" field in Cursor .mdc frontmatter',
+      suggestion: "Add a description so Cursor knows when to apply this rule"
+    });
+  }
+  if (!("alwaysApply" in fm.fields) && !("globs" in fm.fields)) {
+    issues.push({
+      severity: "info",
+      check: "frontmatter",
+      line: 1,
+      message: 'No "alwaysApply" or "globs" field \u2014 rule may not be applied automatically',
+      suggestion: "Set alwaysApply: true or specify globs for targeted activation"
+    });
+  }
+  if ("alwaysApply" in fm.fields) {
+    const val = fm.fields["alwaysApply"].toLowerCase();
+    if (!["true", "false"].includes(val)) {
+      issues.push({
+        severity: "error",
+        check: "frontmatter",
+        line: 1,
+        message: `Invalid alwaysApply value: "${fm.fields["alwaysApply"]}"`,
+        suggestion: "alwaysApply must be true or false"
+      });
+    }
+  }
+  if ("globs" in fm.fields) {
+    const val = fm.fields["globs"];
+    if (val && !val.startsWith("[") && !val.startsWith('"') && !val.includes("*") && !val.includes("/")) {
+      issues.push({
+        severity: "warning",
+        check: "frontmatter",
+        line: 1,
+        message: `Possibly invalid globs value: "${val}"`,
+        suggestion: 'globs should be a glob pattern like "src/**/*.ts" or an array like ["*.ts", "*.tsx"]'
+      });
+    }
+  }
+  return issues;
+}
+function validateCopilotInstructions(file) {
+  const issues = [];
+  const fm = parseFrontmatter(file.content);
+  if (!fm.found) {
+    issues.push({
+      severity: "info",
+      check: "frontmatter",
+      line: 1,
+      message: "Copilot instructions file has no frontmatter",
+      suggestion: "Add applyTo frontmatter to target specific file patterns"
+    });
+    return issues;
+  }
+  if (!fm.fields["applyTo"]) {
+    issues.push({
+      severity: "warning",
+      check: "frontmatter",
+      line: 1,
+      message: 'Missing "applyTo" field in Copilot instructions frontmatter',
+      suggestion: 'Add applyTo to specify which files this instruction applies to (e.g., applyTo: "**/*.ts")'
+    });
+  }
+  return issues;
+}
+function validateWindsurfRule(file) {
+  const issues = [];
+  const fm = parseFrontmatter(file.content);
+  if (!fm.found) {
+    issues.push({
+      severity: "info",
+      check: "frontmatter",
+      line: 1,
+      message: "Windsurf rule file has no frontmatter",
+      suggestion: "Add YAML frontmatter with a trigger field (always_on, glob, manual, model)"
+    });
+    return issues;
+  }
+  if (!fm.fields["trigger"]) {
+    issues.push({
+      severity: "warning",
+      check: "frontmatter",
+      line: 1,
+      message: 'Missing "trigger" field in Windsurf rule frontmatter',
+      suggestion: `Set trigger to one of: ${VALID_WINDSURF_TRIGGERS.join(", ")}`
+    });
+  } else {
+    const trigger = fm.fields["trigger"].replace(/['"]/g, "");
+    if (!VALID_WINDSURF_TRIGGERS.includes(trigger)) {
+      issues.push({
+        severity: "error",
+        check: "frontmatter",
+        line: 1,
+        message: `Invalid trigger value: "${trigger}"`,
+        suggestion: `Valid triggers: ${VALID_WINDSURF_TRIGGERS.join(", ")}`
+      });
+    }
+  }
+  return issues;
+}
+
+// src/version.ts
+function loadVersion() {
+  if (true) return "0.4.0";
+  const fs5 = __require("fs");
+  const path8 = __require("path");
+  const pkgPath = path8.resolve(__dirname, "../package.json");
+  const pkg = JSON.parse(fs5.readFileSync(pkgPath, "utf-8"));
+  return pkg.version;
+}
+var VERSION = loadVersion();
+
+// src/core/audit.ts
+var ALL_CHECKS = [
+  "paths",
+  "commands",
+  "staleness",
+  "tokens",
+  "redundancy",
+  "contradictions",
+  "frontmatter"
+];
+async function runAudit(projectRoot, activeChecks, options = {}) {
+  const discovered = await scanForContextFiles(projectRoot, {
+    depth: options.depth,
+    extraPatterns: options.extraPatterns
+  });
+  const parsed = discovered.map((f) => parseContextFile(f));
+  const fileResults = [];
+  for (const file of parsed) {
+    const checkPromises = [];
+    if (activeChecks.includes("paths")) checkPromises.push(checkPaths(file, projectRoot));
+    if (activeChecks.includes("commands")) checkPromises.push(checkCommands(file, projectRoot));
+    if (activeChecks.includes("staleness")) checkPromises.push(checkStaleness(file, projectRoot));
+    if (activeChecks.includes("tokens")) checkPromises.push(checkTokens(file, projectRoot));
+    if (activeChecks.includes("redundancy")) checkPromises.push(checkRedundancy(file, projectRoot));
+    if (activeChecks.includes("frontmatter"))
+      checkPromises.push(checkFrontmatter(file, projectRoot));
+    const results = await Promise.all(checkPromises);
+    const issues = results.flat();
+    fileResults.push({
+      path: file.relativePath,
+      isSymlink: file.isSymlink,
+      symlinkTarget: file.symlinkTarget,
+      tokens: file.totalTokens,
+      lines: file.totalLines,
+      issues
+    });
+  }
+  if (activeChecks.includes("tokens")) {
+    const aggIssue = checkAggregateTokens(
+      fileResults.map((f) => ({ path: f.path, tokens: f.tokens }))
+    );
+    if (aggIssue && fileResults.length > 0) fileResults[0].issues.push(aggIssue);
+  }
+  if (activeChecks.includes("redundancy")) {
+    const dupIssues = checkDuplicateContent(parsed);
+    if (dupIssues.length > 0 && fileResults.length > 0) fileResults[0].issues.push(...dupIssues);
+  }
+  if (activeChecks.includes("contradictions")) {
+    const contradictionIssues = checkContradictions(parsed);
+    if (contradictionIssues.length > 0 && fileResults.length > 0)
+      fileResults[0].issues.push(...contradictionIssues);
+  }
+  let estimatedWaste = 0;
+  for (const fr of fileResults) {
+    for (const issue of fr.issues) {
+      if (issue.check === "redundancy" && issue.suggestion) {
+        const tokenMatch = issue.suggestion.match(/~(\d+)\s+tokens/);
+        if (tokenMatch) estimatedWaste += parseInt(tokenMatch[1], 10);
+      }
+    }
+  }
+  return {
+    version: VERSION,
+    scannedAt: (/* @__PURE__ */ new Date()).toISOString(),
+    projectRoot,
+    files: fileResults,
+    summary: {
+      errors: fileResults.reduce(
+        (sum, f) => sum + f.issues.filter((i) => i.severity === "error").length,
+        0
+      ),
+      warnings: fileResults.reduce(
+        (sum, f) => sum + f.issues.filter((i) => i.severity === "warning").length,
+        0
+      ),
+      info: fileResults.reduce(
+        (sum, f) => sum + f.issues.filter((i) => i.severity === "info").length,
+        0
+      ),
+      totalTokens: fileResults.reduce((sum, f) => sum + f.tokens, 0),
+      estimatedWaste
+    }
+  };
+}
+
 // src/core/fixer.ts
 import * as fs4 from "fs";
 import chalk from "chalk";
@@ -958,30 +1545,31 @@ function applyFixes(result) {
 
 // src/mcp/server.ts
 import * as path7 from "path";
-
-// src/version.ts
-function loadVersion() {
-  if (true) return "0.2.2";
-  const fs5 = __require("fs");
-  const path8 = __require("path");
-  const pkgPath = path8.resolve(__dirname, "../package.json");
-  const pkg = JSON.parse(fs5.readFileSync(pkgPath, "utf-8"));
-  return pkg.version;
-}
-var VERSION = loadVersion();
-
-// src/mcp/server.ts
-var ALL_CHECKS = ["paths", "commands", "staleness", "tokens", "redundancy"];
+var checkEnum = z.enum([
+  "paths",
+  "commands",
+  "staleness",
+  "tokens",
+  "redundancy",
+  "contradictions",
+  "frontmatter"
+]);
 var server = new McpServer({
   name: "ctxlint",
   version: VERSION
 });
 server.tool(
   "ctxlint_audit",
-  "Audit all AI agent context files (CLAUDE.md, AGENTS.md, etc.) in the project for stale references, invalid commands, redundant content, and token waste.",
+  "Audit all AI agent context files (CLAUDE.md, AGENTS.md, etc.) in the project for stale references, invalid commands, redundant content, contradictions, frontmatter issues, and token waste.",
   {
     projectPath: z.string().optional().describe("Path to the project root. Defaults to current working directory."),
-    checks: z.array(z.enum(["paths", "commands", "staleness", "tokens", "redundancy"])).optional().describe("Which checks to run. Defaults to all.")
+    checks: z.array(checkEnum).optional().describe("Which checks to run. Defaults to all.")
+  },
+  {
+    readOnlyHint: true,
+    destructiveHint: false,
+    idempotentHint: true,
+    openWorldHint: false
   },
   async ({ projectPath, checks }) => {
     const root = path7.resolve(projectPath || process.cwd());
@@ -1008,6 +1596,12 @@ server.tool(
     path: z.string().describe("The file path to validate"),
     projectPath: z.string().optional().describe("Project root. Defaults to cwd.")
   },
+  {
+    readOnlyHint: true,
+    destructiveHint: false,
+    idempotentHint: true,
+    openWorldHint: false
+  },
   async ({ path: filePath, projectPath }) => {
     try {
       const root = path7.resolve(projectPath || process.cwd());
@@ -1043,6 +1637,12 @@ server.tool(
   {
     projectPath: z.string().optional().describe("Project root. Defaults to cwd.")
   },
+  {
+    readOnlyHint: true,
+    destructiveHint: false,
+    idempotentHint: true,
+    openWorldHint: false
+  },
   async ({ projectPath }) => {
     const root = path7.resolve(projectPath || process.cwd());
     try {
@@ -1059,7 +1659,11 @@ server.tool(
         content: [
           {
             type: "text",
-            text: JSON.stringify({ files, totalTokens }, null, 2)
+            text: JSON.stringify(
+              { files, totalTokens, note: "Token counts use GPT-4 cl100k_base tokenizer" },
+              null,
+              2
+            )
           }
         ]
       };
@@ -1079,7 +1683,13 @@ server.tool(
   "Run the linter with --fix mode to auto-correct broken file paths in context files using git history and fuzzy matching. Returns a summary of what was fixed.",
   {
     projectPath: z.string().optional().describe("Path to the project root. Defaults to current working directory."),
-    checks: z.array(z.enum(["paths", "commands", "staleness", "tokens", "redundancy"])).optional().describe("Which checks to run before fixing. Defaults to all.")
+    checks: z.array(checkEnum).optional().describe("Which checks to run before fixing. Defaults to all.")
+  },
+  {
+    readOnlyHint: false,
+    destructiveHint: false,
+    idempotentHint: true,
+    openWorldHint: false
   },
   async ({ projectPath, checks }) => {
     const root = path7.resolve(projectPath || process.cwd());
@@ -1115,69 +1725,5 @@ server.tool(
     }
   }
 );
-async function runAudit(projectRoot, activeChecks) {
-  const discovered = await scanForContextFiles(projectRoot);
-  const parsed = discovered.map((f) => parseContextFile(f));
-  const fileResults = [];
-  for (const file of parsed) {
-    const issues = [];
-    if (activeChecks.includes("paths")) issues.push(...await checkPaths(file, projectRoot));
-    if (activeChecks.includes("commands")) issues.push(...await checkCommands(file, projectRoot));
-    if (activeChecks.includes("staleness"))
-      issues.push(...await checkStaleness(file, projectRoot));
-    if (activeChecks.includes("tokens")) issues.push(...await checkTokens(file, projectRoot));
-    if (activeChecks.includes("redundancy"))
-      issues.push(...await checkRedundancy(file, projectRoot));
-    fileResults.push({
-      path: file.relativePath,
-      isSymlink: file.isSymlink,
-      symlinkTarget: file.symlinkTarget,
-      tokens: file.totalTokens,
-      lines: file.totalLines,
-      issues
-    });
-  }
-  if (activeChecks.includes("tokens")) {
-    const aggIssue = checkAggregateTokens(
-      fileResults.map((f) => ({ path: f.path, tokens: f.tokens }))
-    );
-    if (aggIssue && fileResults.length > 0) fileResults[0].issues.push(aggIssue);
-  }
-  if (activeChecks.includes("redundancy")) {
-    const dupIssues = checkDuplicateContent(parsed);
-    if (dupIssues.length > 0 && fileResults.length > 0) fileResults[0].issues.push(...dupIssues);
-  }
-  let estimatedWaste = 0;
-  for (const fr of fileResults) {
-    for (const issue of fr.issues) {
-      if (issue.check === "redundancy" && issue.suggestion) {
-        const tokenMatch = issue.suggestion.match(/~(\d+)\s+tokens/);
-        if (tokenMatch) estimatedWaste += parseInt(tokenMatch[1], 10);
-      }
-    }
-  }
-  return {
-    version: VERSION,
-    scannedAt: (/* @__PURE__ */ new Date()).toISOString(),
-    projectRoot,
-    files: fileResults,
-    summary: {
-      errors: fileResults.reduce(
-        (sum, f) => sum + f.issues.filter((i) => i.severity === "error").length,
-        0
-      ),
-      warnings: fileResults.reduce(
-        (sum, f) => sum + f.issues.filter((i) => i.severity === "warning").length,
-        0
-      ),
-      info: fileResults.reduce(
-        (sum, f) => sum + f.issues.filter((i) => i.severity === "info").length,
-        0
-      ),
-      totalTokens: fileResults.reduce((sum, f) => sum + f.tokens, 0),
-      estimatedWaste
-    }
-  };
-}
 var transport = new StdioServerTransport();
 await server.connect(transport);