@wrongstack/tools 0.5.2 → 0.5.5

package/dist/edit.js

@@ -54,12 +54,13 @@ var editTool = {
     if (!ctx.hasRead(absPath)) {
       throw new Error(`edit: file "${input.path}" was not read in this session. Read it first.`);
     }
-    const lastReadMtime = ctx.lastReadMtime(absPath);
+    const original = await fs.readFile(absPath, "utf8");
+    const updated = await fs.stat(absPath);
     const mtimeTolerance = process.platform === "win32" ? 2e3 : 1;
-    if (lastReadMtime !== void 0 && stat2.mtimeMs > lastReadMtime + mtimeTolerance) {
+    const lastReadMtime = ctx.lastReadMtime(absPath);
+    if (lastReadMtime !== void 0 && updated.mtimeMs > lastReadMtime + mtimeTolerance) {
       throw new Error(`edit: file "${input.path}" was modified externally. Re-read it first.`);
     }
-    const original = await fs.readFile(absPath, "utf8");
     const style = detectNewlineStyle(original);
     const fileLf = normalizeToLf(original);
     const oldLf = normalizeToLf(input.old_string);
@@ -93,8 +94,7 @@ var editTool = {
     }
     const newFileLf = input.replace_all ? fileLf.split(oldLf).join(newLf) : fileLf.replace(oldLf, newLf);
     const newFile = toStyle(newFileLf, style);
-    await atomicWrite(absPath, newFile, { mode: stat2.mode & 511 });
-    const updated = await fs.stat(absPath);
+    await atomicWrite(absPath, newFile, { mode: updated.mode & 511 });
     ctx.recordRead(absPath, updated.mtimeMs);
     ctx.session.recordFileChange({
       path: absPath,

package/dist/edit.js.map

@@ -1 +1 @@
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AA,MAAM,KAAA,GAAQ,OAAO,KAAA,CAAM,CAAA,EAAG,KAAK,GAAA,CAAI,EAAA,EAAI,MAAA,CAAO,MAAM,CAAC,CAAA;AACzD,EAAA,MAAM,GAAA,GAAM,QAAA,CAAS,OAAA,CAAQ,KAAK,CAAA;AAClC,EAAA,IAAI,GAAA,KAAQ,IAAI,OAAO,MAAA;AACvB,EAAA,IAAI,IAAA,GAAO,CAAA;AACX,EAAA,KAAA,IAAS,CAAA,GAAI,CAAA,EAAG,CAAA,GAAI,GAAA,EAAK,CAAA,EAAA,EAAK;AAC5B,IAAA,IAAI,QAAA,CAAS,UAAA,CAAW,CAAC,CAAA,KAAM,EAAA,EAAM,IAAA,EAAA;AAAA,EACvC;AACA,EAAA,OAAO,IAAA;AACT","file":"edit.js","sourcesContent":["import * as path from 'node:path';\nimport type { Context } from '@wrongstack/core';\n\nexport function resolvePath(input: string, ctx: Context): string {\n  return path.isAbsolute(input) ? path.normalize(input) : path.resolve(ctx.cwd, input);\n}\n\nexport function ensureInsideRoot(absPath: string, ctx: Context): string {\n  const root = path.resolve(ctx.projectRoot);\n  const target = path.resolve(absPath);\n  const rel = path.relative(root, target);\n  if (rel.startsWith('..') || path.isAbsolute(rel)) {\n    throw new Error(`Path \"${absPath}\" is outside project root \"${root}\"`);\n  }\n  return target;\n}\n\nexport function safeResolve(input: string, ctx: Context): string {\n  return ensureInsideRoot(resolvePath(input, ctx), ctx);\n}\n\nexport function truncateMiddle(s: string, max: number): string {\n  if (Buffer.byteLength(s, 'utf8') <= max) return s;\n  const half = Math.floor(max / 2);\n  return (\n    s.slice(0, half) +\n    `\\n…[truncated ${Buffer.byteLength(s, 'utf8') - max} bytes from middle]…\\n` +\n    s.slice(-half)\n  );\n}\n\nexport function isBinaryBuffer(buf: Buffer): boolean {\n  const len = Math.min(buf.length, 8192);\n  for (let i = 0; i < len; i++) {\n    if (buf[i] === 0) return true;\n  }\n  return false;\n}\n","import * as fs from 'node:fs/promises';\nimport {\n  atomicWrite,\n  detectNewlineStyle,\n  normalizeToLf,\n  toStyle,\n  unifiedDiff,\n} from '@wrongstack/core';\nimport type { Tool } from '@wrongstack/core';\nimport { safeResolve } from './_util.js';\n\ninterface EditInput {\n  path: string;\n  old_string: string;\n  new_string: string;\n  /**\n   * When true, replaces all occurrences of `old_string`.\n   * When false (default), replaces only the first occurrence and errors\n   * if more than one match exists — use this to ensure you target the\n   * right location.\n   */\n  replace_all?: boolean;\n}\n\ninterface EditOutput {\n  path: string;\n  replacements: number;\n  diff: string;\n}\n\nexport const editTool: Tool<EditInput, EditOutput> = {\n  name: 'edit',\n  category: 'Filesystem',\n  description:\n    'Make a surgical edit by replacing exact text. Fails if `old_string` is not unique unless `replace_all` is true.',\n  usageHint:\n    'Always `read` the file first. `old_string` must be an EXACT match (whitespace included). If multiple matches exist, either narrow `old_string` with more context or set `replace_all: true`.',\n  permission: 'confirm',\n  mutating: true,\n  timeoutMs: 5_000,\n  inputSchema: {\n    type: 'object',\n    properties: {\n      path: { type: 'string' },\n      old_string: { type: 'string' },\n      new_string: { type: 'string' },\n      replace_all: { type: 'boolean' },\n    },\n    required: ['path', 'old_string', 'new_string'],\n  },\n  async execute(input, ctx) {\n    if (!input?.path) throw new Error('edit: path is required');\n    if (input.old_string === undefined) throw new Error('edit: old_string is required');\n    if (input.new_string === undefined) throw new Error('edit: new_string is required');\n    if (input.old_string === '') throw new Error('edit: old_string cannot be empty');\n\n    const absPath = safeResolve(input.path, ctx);\n    const stat = await fs.stat(absPath).catch((err) => {\n      if ((err as NodeJS.ErrnoException).code === 'ENOENT') {\n        throw new Error(`edit: file \"${input.path}\" does not exist. Use \\`write\\` instead.`);\n      }\n      throw err;\n    });\n    if (!stat.isFile()) throw new Error(`edit: \"${input.path}\" is not a regular file`);\n\n    // Read-before-write invariant\n    if (!ctx.hasRead(absPath)) {\n      throw new Error(`edit: file \"${input.path}\" was not read in this session. Read it first.`);\n    }\n    // Stale-read detection. Tolerance accounts for filesystem mtime\n    // resolution: ext4/APFS report ms, but Windows FAT and some network\n    // filesystems quantize to 2 s. A too-tight tolerance triggers false\n    // \"modified externally\" failures when a tool writes and re-reads the\n    // same file in quick succession.\n    const lastReadMtime = ctx.lastReadMtime(absPath);\n    const mtimeTolerance = process.platform === 'win32' ? 2000 : 1;\n    if (lastReadMtime !== undefined && stat.mtimeMs > lastReadMtime + mtimeTolerance) {\n      throw new Error(`edit: file \"${input.path}\" was modified externally. Re-read it first.`);\n    }\n\n    const original = await fs.readFile(absPath, 'utf8');\n    const style = detectNewlineStyle(original);\n    const fileLf = normalizeToLf(original);\n    const oldLf = normalizeToLf(input.old_string);\n    const newLf = normalizeToLf(input.new_string);\n\n    if (oldLf === newLf) {\n      return {\n        path: absPath,\n        replacements: 0,\n        diff: '(no-op: old and new are identical)',\n      };\n    }\n\n    let count = 0;\n    let idx = fileLf.indexOf(oldLf);\n    const matches: number[] = [];\n    while (idx !== -1) {\n      matches.push(idx);\n      count++;\n      idx = fileLf.indexOf(oldLf, idx + 1);\n    }\n\n    if (count === 0) {\n      const hint = findSimilarity(fileLf, oldLf);\n      throw new Error(\n        `edit: no match for old_string in \"${input.path}\".${\n          hint ? ` Nearest match near line ${hint}.` : ''\n        }`,\n      );\n    }\n\n    if (count > 1 && !input.replace_all) {\n      const lines = lineNumbersFor(fileLf, matches);\n      throw new Error(\n        `edit: old_string matched ${count} times in \"${input.path}\" (lines: ${lines.join(', ')}). ` +\n          `Add more context to make it unique, or set replace_all: true.`,\n      );\n    }\n\n    const newFileLf = input.replace_all\n      ? fileLf.split(oldLf).join(newLf)\n      : fileLf.replace(oldLf, newLf);\n    const newFile = toStyle(newFileLf, style);\n\n    await atomicWrite(absPath, newFile, { mode: stat.mode & 0o777 });\n    const updated = await fs.stat(absPath);\n    ctx.recordRead(absPath, updated.mtimeMs);\n\n    // Record for session rewind\n    ctx.session.recordFileChange({\n      path: absPath,\n      action: 'modified',\n      before: original,\n      after: newFile,\n    });\n\n    const diff = unifiedDiff(original, newFile, {\n      fromFile: input.path,\n      toFile: input.path,\n    });\n\n    return {\n      path: absPath,\n      replacements: input.replace_all ? count : 1,\n      diff,\n    };\n  },\n};\n\nfunction lineNumbersFor(text: string, indices: number[]): number[] {\n  const out: number[] = [];\n  let pos = 0;\n  let line = 1;\n  for (const target of indices) {\n    while (pos < target) {\n      if (text.charCodeAt(pos) === 0x0a) line++;\n      pos++;\n    }\n    out.push(line);\n  }\n  return out;\n}\n\nfunction findSimilarity(haystack: string, needle: string): number | undefined {\n  if (needle.length < 20) return undefined;\n  const probe = needle.slice(0, Math.min(40, needle.length));\n  const idx = haystack.indexOf(probe);\n  if (idx === -1) return undefined;\n  let line = 1;\n  for (let i = 0; i < idx; i++) {\n    if (haystack.charCodeAt(i) === 0x0a) line++;\n  }\n  return line;\n}\n"]}
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* as path from 'node:path';\nimport type { Context } from '@wrongstack/core';\n\nexport function resolvePath(input: string, ctx: Context): string {\n  return path.isAbsolute(input) ? path.normalize(input) : path.resolve(ctx.cwd, input);\n}\n\nexport function ensureInsideRoot(absPath: string, ctx: Context): string {\n  const root = path.resolve(ctx.projectRoot);\n  const target = path.resolve(absPath);\n  const rel = path.relative(root, target);\n  if (rel.startsWith('..') || path.isAbsolute(rel)) {\n    throw new Error(`Path \"${absPath}\" is outside project root \"${root}\"`);\n  }\n  return target;\n}\n\nexport function safeResolve(input: string, ctx: Context): string {\n  return ensureInsideRoot(resolvePath(input, ctx), ctx);\n}\n\nexport function truncateMiddle(s: string, max: number): string {\n  if (Buffer.byteLength(s, 'utf8') <= max) return s;\n  const half = Math.floor(max / 2);\n  return (\n    s.slice(0, half) +\n    `\\n…[truncated ${Buffer.byteLength(s, 'utf8') - max} bytes from middle]…\\n` +\n    s.slice(-half)\n  );\n}\n\nexport function isBinaryBuffer(buf: Buffer): boolean {\n  const len = Math.min(buf.length, 8192);\n  for (let i = 0; i < len; i++) {\n    if (buf[i] === 0) return true;\n  }\n  return false;\n}\n","import * as fs from 'node:fs/promises';\nimport {\n  atomicWrite,\n  detectNewlineStyle,\n  normalizeToLf,\n  toStyle,\n  unifiedDiff,\n} from '@wrongstack/core';\nimport type { Tool } from '@wrongstack/core';\nimport { safeResolve } from './_util.js';\n\ninterface EditInput {\n  path: string;\n  old_string: string;\n  new_string: string;\n  /**\n   * When true, replaces all occurrences of `old_string`.\n   * When false (default), replaces only the first occurrence and errors\n   * if more than one match exists — use this to ensure you target the\n   * right location.\n   */\n  replace_all?: boolean;\n}\n\ninterface EditOutput {\n  path: string;\n  replacements: number;\n  diff: string;\n}\n\nexport const editTool: Tool<EditInput, EditOutput> = {\n  name: 'edit',\n  category: 'Filesystem',\n  description:\n    'Make a surgical edit by replacing exact text. Fails if `old_string` is not unique unless `replace_all` is true.',\n  usageHint:\n    'Always `read` the file first. `old_string` must be an EXACT match (whitespace included). If multiple matches exist, either narrow `old_string` with more context or set `replace_all: true`.',\n  permission: 'confirm',\n  mutating: true,\n  timeoutMs: 5_000,\n  inputSchema: {\n    type: 'object',\n    properties: {\n      path: { type: 'string' },\n      old_string: { type: 'string' },\n      new_string: { type: 'string' },\n      replace_all: { type: 'boolean' },\n    },\n    required: ['path', 'old_string', 'new_string'],\n  },\n  async execute(input, ctx) {\n    if (!input?.path) throw new Error('edit: path is required');\n    if (input.old_string === undefined) throw new Error('edit: old_string is required');\n    if (input.new_string === undefined) throw new Error('edit: new_string is required');\n    if (input.old_string === '') throw new Error('edit: old_string cannot be empty');\n\n    const absPath = safeResolve(input.path, ctx);\n    const stat = await fs.stat(absPath).catch((err) => {\n      if ((err as NodeJS.ErrnoException).code === 'ENOENT') {\n        throw new Error(`edit: file \"${input.path}\" does not exist. Use \\`write\\` instead.`);\n      }\n      throw err;\n    });\n    if (!stat.isFile()) throw new Error(`edit: \"${input.path}\" is not a regular file`);\n\n    // Read-before-write invariant\n    if (!ctx.hasRead(absPath)) {\n      throw new Error(`edit: file \"${input.path}\" was not read in this session. Read it first.`);\n    }\n    // Read BEFORE mtime check to eliminate TOCTOU window.\n    // The sequence must be: read content → check mtime → apply edit.\n    // If we check mtime first, a concurrent modification between the\n    // stat call and the read gives us stale content to search/replace.\n    const original = await fs.readFile(absPath, 'utf8');\n    const updated = await fs.stat(absPath);\n    const mtimeTolerance = process.platform === 'win32' ? 2000 : 1;\n    const lastReadMtime = ctx.lastReadMtime(absPath);\n    if (lastReadMtime !== undefined && updated.mtimeMs > lastReadMtime + mtimeTolerance) {\n      throw new Error(`edit: file \"${input.path}\" was modified externally. Re-read it first.`);\n    }\n    const style = detectNewlineStyle(original);\n    const fileLf = normalizeToLf(original);\n    const oldLf = normalizeToLf(input.old_string);\n    const newLf = normalizeToLf(input.new_string);\n\n    if (oldLf === newLf) {\n      return {\n        path: absPath,\n        replacements: 0,\n        diff: '(no-op: old and new are identical)',\n      };\n    }\n\n    let count = 0;\n    let idx = fileLf.indexOf(oldLf);\n    const matches: number[] = [];\n    while (idx !== -1) {\n      matches.push(idx);\n      count++;\n      idx = fileLf.indexOf(oldLf, idx + 1);\n    }\n\n    if (count === 0) {\n      const hint = findSimilarity(fileLf, oldLf);\n      throw new Error(\n        `edit: no match for old_string in \"${input.path}\".${\n          hint ? ` Nearest match near line ${hint}.` : ''\n        }`,\n      );\n    }\n\n    if (count > 1 && !input.replace_all) {\n      const lines = lineNumbersFor(fileLf, matches);\n      throw new Error(\n        `edit: old_string matched ${count} times in \"${input.path}\" (lines: ${lines.join(', ')}). ` +\n          `Add more context to make it unique, or set replace_all: true.`,\n      );\n    }\n\n    const newFileLf = input.replace_all\n      ? fileLf.split(oldLf).join(newLf)\n      : fileLf.replace(oldLf, newLf);\n    const newFile = toStyle(newFileLf, style);\n\n    await atomicWrite(absPath, newFile, { mode: updated.mode & 0o777 });\n    ctx.recordRead(absPath, updated.mtimeMs);\n\n    // Record for session rewind\n    ctx.session.recordFileChange({\n      path: absPath,\n      action: 'modified',\n      before: original,\n      after: newFile,\n    });\n\n    const diff = unifiedDiff(original, newFile, {\n      fromFile: input.path,\n      toFile: input.path,\n    });\n\n    return {\n      path: absPath,\n      replacements: input.replace_all ? count : 1,\n      diff,\n    };\n  },\n};\n\nfunction lineNumbersFor(text: string, indices: number[]): number[] {\n  const out: number[] = [];\n  let pos = 0;\n  let line = 1;\n  for (const target of indices) {\n    while (pos < target) {\n      if (text.charCodeAt(pos) === 0x0a) line++;\n      pos++;\n    }\n    out.push(line);\n  }\n  return out;\n}\n\nfunction findSimilarity(haystack: string, needle: string): number | undefined {\n  if (needle.length < 20) return undefined;\n  const probe = needle.slice(0, Math.min(40, needle.length));\n  const idx = haystack.indexOf(probe);\n  if (idx === -1) return undefined;\n  let line = 1;\n  for (let i = 0; i < idx; i++) {\n    if (haystack.charCodeAt(i) === 0x0a) line++;\n  }\n  return line;\n}\n"]}

package/dist/exec.js

@@ -7,8 +7,8 @@ import { buildChildEnv } from '@wrongstack/core';
 // src/exec.ts
 var ALLOWED_COMMANDS = {
   node: ["--version", "-r", "--input-type=module"],
-  npm: ["--version", "init", "install", "test", "list", "pkg", "doctor"],
-  pnpm: ["--version", "init", "install", "add", "remove", "list"],
+  npm: ["--version", "list", "pkg", "doctor", "view", "outdated", "audit"],
+  pnpm: ["--version", "remove", "list", "view", "outdated", "audit"],
   npx: ["--version"],
   git: [
     "--version",
@@ -36,7 +36,7 @@ var ALLOWED_COMMANDS = {
   mv: [],
   rm: ["-rf"],
   touch: [],
-  bun: ["--version", "add", "init"],
+  bun: ["--version"],
   tsc: ["--version", "--noEmit", "--project"],
   vitest: ["--version", "run", "--coverage"],
   biome: ["--version", "lint", "format", "check"],
@@ -44,7 +44,7 @@ var ALLOWED_COMMANDS = {
   rustc: ["--version"],
   go: ["version", "run", "build", "test"],
   python: ["--version"],
-  pip: ["--version", "install", "list"],
+  pip: ["--version", "list"],
   docker: ["--version", "ps", "images"],
   kubectl: ["version", "get", "describe", "logs"]
 };

package/dist/exec.js.map

@@ -1 +1 @@
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{ spawn } from 'node:child_process';\r\nimport * as path from 'node:path';\r\nimport type { Tool } from '@wrongstack/core';\r\nimport { buildChildEnv } from './_env.js';\r\n\r\nconst ALLOWED_COMMANDS: Record<string, string[]> = {\r\n  node: ['--version', '-r', '--input-type=module'],\r\n  npm: ['--version', 'init', 'install', 'test', 'list', 'pkg', 'doctor'],\r\n  pnpm: ['--version', 'init', 'install', 'add', 'remove', 'list'],\r\n  npx: ['--version'],\r\n  git: [\r\n    '--version',\r\n    'status',\r\n    'log',\r\n    'diff',\r\n    'branch',\r\n    'checkout',\r\n    'stash',\r\n    'add',\r\n    'commit',\r\n    'push',\r\n    'pull',\r\n  ],\r\n  ls: ['-la', '-l', '-a'],\r\n  cat: [],\r\n  head: ['-n'],\r\n  tail: ['-n'],\r\n  wc: ['-l', '-w', '-c'],\r\n  grep: [],\r\n  find: [],\r\n  echo: [],\r\n  mkdir: ['-p'],\r\n  cp: ['-r'],\r\n  mv: [],\r\n  rm: ['-rf'],\r\n  touch: [],\r\n  bun: ['--version', 'add', 'init'],\r\n  tsc: ['--version', '--noEmit', '--project'],\r\n  vitest: ['--version', 'run', '--coverage'],\r\n  biome: ['--version', 'lint', 'format', 'check'],\r\n  cargo: ['--version', 'build', 'test', 'check'],\r\n  rustc: ['--version'],\r\n  go: ['version', 'run', 'build', 'test'],\r\n  python: ['--version'],\r\n  pip: ['--version', 'install', 'list'],\r\n  docker: ['--version', 'ps', 'images'],\r\n  kubectl: ['version', 'get', 'describe', 'logs'],\r\n};\r\n\r\nconst MAX_ARGS = 20;\r\nconst MAX_OUTPUT = 200_000;\r\nconst TIMEOUT_MS = 30_000;\r\n\r\n// Per-command argument validation. Each entry is a list of regex patterns\r\n// that, if matched against any argument, will reject the invocation.\r\n// This blocks common injection vectors through allowlisted commands.\r\nconst BLOCKED_ARG_PATTERNS: Record<string, RegExp[]> = {\r\n  // python -c/--command executes arbitrary code; python -m runs modules\r\n  python: [/-c$/, /^--command$/, /^-m$/, /^--module$/],\r\n  // git --exec=<cmd> runs arbitrary commands via upload-pack/receive-pack;\r\n  // -C <dir> changes working directory, bypassing cwd sandbox\r\n  git: [/^--exec=/, /^--upload-pack=/, /^--receive-pack=/, /^-C$/],\r\n  // node -r/--require preloads arbitrary modules; --eval executes code\r\n  node: [/^-r$/, /^--require$/, /^-e$/, /^--eval$/, /^--prof-process$/],\r\n  // go run could execute arbitrary .go files; -ldflags could inject build-time code\r\n  go: [/^-ldflags$/],\r\n  // bun --preload is similar to node --require\r\n  bun: [/^--preload$/],\r\n  // docker build/run can create containers with host access;\r\n  // only allow read-only commands (ps, images, version)\r\n  docker: [/^build$/, /^run$/, /^exec$/, /^push$/, /^pull$/],\r\n  // find -exec/-ok/-execdir execute arbitrary commands\r\n  find: [/^-exec$/, /^-exec;$/, /^-ok$/, /^-ok;$/, /^-execdir$/, /^-execdir;$/, /^-exec=/, /^-ok=/, /^-execdir=/],\r\n  // rm -rf / is catastrophic — block root and home targets\r\n  rm: [/^\\/$/, /^\\/\\*$/, /^~$/],\r\n};\r\n\r\nfunction validateArgs(cmd: string, args: string[]): string | null {\r\n  const blocked = BLOCKED_ARG_PATTERNS[cmd];\r\n  if (!blocked) return null;\r\n\r\n  for (const arg of args) {\r\n    for (const pattern of blocked) {\r\n      if (pattern.test(arg)) {\r\n        return `Blocked argument \"${arg}\" for command \"${cmd}\" (matches security pattern ${pattern})`;\r\n      }\r\n    }\r\n  }\r\n  return null;\r\n}\r\n\r\ninterface ExecInput {\r\n  command: string;\r\n  args?: string[];\r\n  cwd?: string;\r\n  timeout?: number;\r\n}\r\n\r\ninterface ExecOutput {\r\n  command: string;\r\n  args: string[];\r\n  stdout: string;\r\n  stderr: string;\r\n  exitCode: number;\r\n  truncated: boolean;\r\n  allowed: boolean;\r\n}\r\n\r\nexport const execTool: Tool<ExecInput, ExecOutput> = {\r\n  name: 'exec',\r\n  category: 'Shell',\r\n  description:\r\n    'Restricted shell that only runs pre-approved commands with constrained arguments. Safer alternative to `bash`.',\r\n  usageHint:\r\n    'Set `command` (must be in allowlist). `args` passed through. For arbitrary shell access use the `bash` tool instead.',\r\n  permission: 'confirm',\r\n  mutating: true,\r\n  timeoutMs: TIMEOUT_MS,\r\n  inputSchema: {\r\n    type: 'object',\r\n    properties: {\r\n      command: { type: 'string', description: 'Command to run (must be in allowlist)' },\r\n      args: { type: 'array', items: { type: 'string' }, description: 'Arguments' },\r\n      cwd: { type: 'string', description: 'Working directory (must resolve inside project root)' },\r\n      timeout: { type: 'integer', description: 'Timeout in ms (default: 30000)' },\r\n    },\r\n    required: ['command'],\r\n  },\r\n  async execute(input, ctx, opts) {\r\n    const cmd = input.command.trim();\r\n    if (!cmd)\r\n      return {\r\n        command: cmd,\r\n        args: [],\r\n        stdout: '',\r\n        stderr: 'Empty command',\r\n        exitCode: 1,\r\n        truncated: false,\r\n        allowed: false,\r\n      };\r\n\r\n    if (!(cmd in ALLOWED_COMMANDS)) {\r\n      return {\r\n        command: cmd,\r\n        args: input.args ?? 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Model-supplied paths like '/etc'\r\n    // would otherwise let allowlisted commands operate anywhere on disk.\r\n    const requestedCwd = input.cwd ? path.resolve(ctx.projectRoot, input.cwd) : ctx.cwd;\r\n    const rel = path.relative(ctx.projectRoot, requestedCwd);\r\n    if (rel.startsWith('..') || path.isAbsolute(rel)) {\r\n      return {\r\n        command: cmd,\r\n        args,\r\n        stdout: '',\r\n        stderr: `cwd \"${input.cwd}\" resolves outside project root`,\r\n        exitCode: 1,\r\n        truncated: false,\r\n        allowed: false,\r\n      };\r\n    }\r\n    const cwd = requestedCwd;\r\n    const signal = opts.signal;\r\n\r\n    return runCommand(cmd, args, cwd, timeout, signal, ctx.session?.id);\r\n  },\r\n};\r\n\r\nfunction runCommand(\r\n  cmd: string,\r\n  args: string[],\r\n  cwd: string,\r\n  timeout: number,\r\n  signal: AbortSignal,\r\n  sessionId: string | undefined,\r\n): Promise<ExecOutput> {\r\n  return new Promise((resolve) => {\r\n    let stdout = '';\r\n    let stderr = '';\r\n    let killed = false;\r\n\r\n    const child = spawn(cmd, args, {\r\n      cwd,\r\n      signal,\r\n      env: buildChildEnv(sessionId),\r\n      stdio: ['ignore', 'pipe', 'pipe'],\r\n    });\r\n    const timer = setTimeout(() => {\r\n      killed = true;\r\n      child.kill('SIGTERM');\r\n    }, timeout);\r\n\r\n    child.stdout?.on('data', (chunk: Buffer) => {\r\n      if (stdout.length < MAX_OUTPUT) stdout += chunk.toString();\r\n    });\r\n\r\n    child.stderr?.on('data', (chunk: Buffer) => {\r\n      if (stderr.length < MAX_OUTPUT) stderr += chunk.toString();\r\n    });\r\n\r\n    child.on('close', (code) => {\r\n      clearTimeout(timer);\r\n      resolve({\r\n        command: cmd,\r\n        args,\r\n        stdout: stdout.slice(0, MAX_OUTPUT),\r\n        stderr: stderr.slice(0, MAX_OUTPUT),\r\n        exitCode: killed ? 124 : (code ?? 1),\r\n        truncated: stdout.length >= MAX_OUTPUT || stderr.length >= MAX_OUTPUT,\r\n        allowed: true,\r\n      });\r\n    });\r\n\r\n    child.on('error', (err) => {\r\n      clearTimeout(timer);\r\n      resolve({\r\n        command: cmd,\r\n        args,\r\n        stdout: stdout.slice(0, MAX_OUTPUT),\r\n        stderr: err.message,\r\n        exitCode: 1,\r\n        truncated: false,\r\n        allowed: true,\r\n      });\r\n    });\r\n  });\r\n}\r\n"]}
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Safer alternative to `bash`.',\r\n  usageHint:\r\n    'Set `command` (must be in allowlist). `args` passed through. For arbitrary shell access use the `bash` tool instead.',\r\n  permission: 'confirm',\r\n  mutating: true,\r\n  timeoutMs: TIMEOUT_MS,\r\n  inputSchema: {\r\n    type: 'object',\r\n    properties: {\r\n      command: { type: 'string', description: 'Command to run (must be in allowlist)' },\r\n      args: { type: 'array', items: { type: 'string' }, description: 'Arguments' },\r\n      cwd: { type: 'string', description: 'Working directory (must resolve inside project root)' },\r\n      timeout: { type: 'integer', description: 'Timeout in ms (default: 30000)' },\r\n    },\r\n    required: ['command'],\r\n  },\r\n  async execute(input, ctx, opts) {\r\n    const cmd = input.command.trim();\r\n    if (!cmd)\r\n      return {\r\n        command: cmd,\r\n        args: [],\r\n        stdout: '',\r\n        stderr: 'Empty command',\r\n        exitCode: 1,\r\n        truncated: false,\r\n        allowed: false,\r\n      };\r\n\r\n    if (!(cmd in ALLOWED_COMMANDS)) {\r\n      return {\r\n        command: cmd,\r\n        args: input.args ?? [],\r\n        stdout: '',\r\n        stderr: `Command \"${cmd}\" not in allowlist. Use the bash tool for arbitrary commands.`,\r\n        exitCode: 1,\r\n        truncated: false,\r\n        allowed: false,\r\n      };\r\n    }\r\n\r\n    const args = (input.args ?? []).slice(0, MAX_ARGS);\r\n    const timeout = Math.max(1, Math.min(input.timeout ?? TIMEOUT_MS, TIMEOUT_MS));\r\n\r\n    // Validate args against per-command security patterns\r\n    const argError = validateArgs(cmd, args);\r\n    if (argError) {\r\n      return {\r\n        command: cmd,\r\n        args,\r\n        stdout: '',\r\n        stderr: argError,\r\n        exitCode: 1,\r\n        truncated: false,\r\n        allowed: false,\r\n      };\r\n    }\r\n\r\n    // Resolve cwd inside the project root. Model-supplied paths like '/etc'\r\n    // would otherwise let allowlisted commands operate anywhere on disk.\r\n    const requestedCwd = input.cwd ? path.resolve(ctx.projectRoot, input.cwd) : ctx.cwd;\r\n    const rel = path.relative(ctx.projectRoot, requestedCwd);\r\n    if (rel.startsWith('..') || path.isAbsolute(rel)) {\r\n      return {\r\n        command: cmd,\r\n        args,\r\n        stdout: '',\r\n        stderr: `cwd \"${input.cwd}\" resolves outside project root`,\r\n        exitCode: 1,\r\n        truncated: false,\r\n        allowed: false,\r\n      };\r\n    }\r\n    const cwd = requestedCwd;\r\n    const signal = opts.signal;\r\n\r\n    return runCommand(cmd, args, cwd, timeout, signal, ctx.session?.id);\r\n  },\r\n};\r\n\r\nfunction runCommand(\r\n  cmd: string,\r\n  args: string[],\r\n  cwd: string,\r\n  timeout: number,\r\n  signal: AbortSignal,\r\n  sessionId: string | undefined,\r\n): Promise<ExecOutput> {\r\n  return new Promise((resolve) => {\r\n    let stdout = '';\r\n    let stderr = '';\r\n    let killed = false;\r\n\r\n    const child = spawn(cmd, args, {\r\n      cwd,\r\n      signal,\r\n      env: buildChildEnv(sessionId),\r\n      stdio: ['ignore', 'pipe', 'pipe'],\r\n    });\r\n    const timer = setTimeout(() => {\r\n      killed = true;\r\n      child.kill('SIGTERM');\r\n    }, timeout);\r\n\r\n    child.stdout?.on('data', (chunk: Buffer) => {\r\n      if (stdout.length < MAX_OUTPUT) stdout += chunk.toString();\r\n    });\r\n\r\n    child.stderr?.on('data', (chunk: Buffer) => {\r\n      if (stderr.length < MAX_OUTPUT) stderr += chunk.toString();\r\n    });\r\n\r\n    child.on('close', (code) => {\r\n      clearTimeout(timer);\r\n      resolve({\r\n        command: cmd,\r\n        args,\r\n        stdout: stdout.slice(0, MAX_OUTPUT),\r\n        stderr: stderr.slice(0, MAX_OUTPUT),\r\n        exitCode: killed ? 124 : (code ?? 1),\r\n        truncated: stdout.length >= MAX_OUTPUT || stderr.length >= MAX_OUTPUT,\r\n        allowed: true,\r\n      });\r\n    });\r\n\r\n    child.on('error', (err) => {\r\n      clearTimeout(timer);\r\n      resolve({\r\n        command: cmd,\r\n        args,\r\n        stdout: stdout.slice(0, MAX_OUTPUT),\r\n        stderr: err.message,\r\n        exitCode: 1,\r\n        truncated: false,\r\n        allowed: true,\r\n      });\r\n    });\r\n  });\r\n}\r\n"]}

package/dist/index.js

@@ -196,12 +196,13 @@ var editTool = {
     if (!ctx.hasRead(absPath)) {
       throw new Error(`edit: file "${input.path}" was not read in this session. Read it first.`);
     }
-    const lastReadMtime = ctx.lastReadMtime(absPath);
+    const original = await fs4.readFile(absPath, "utf8");
+    const updated = await fs4.stat(absPath);
     const mtimeTolerance = process.platform === "win32" ? 2e3 : 1;
-    if (lastReadMtime !== void 0 && stat9.mtimeMs > lastReadMtime + mtimeTolerance) {
+    const lastReadMtime = ctx.lastReadMtime(absPath);
+    if (lastReadMtime !== void 0 && updated.mtimeMs > lastReadMtime + mtimeTolerance) {
       throw new Error(`edit: file "${input.path}" was modified externally. Re-read it first.`);
     }
-    const original = await fs4.readFile(absPath, "utf8");
     const style = detectNewlineStyle(original);
     const fileLf = normalizeToLf(original);
     const oldLf = normalizeToLf(input.old_string);
@@ -235,8 +236,7 @@ var editTool = {
     }
     const newFileLf = input.replace_all ? fileLf.split(oldLf).join(newLf) : fileLf.replace(oldLf, newLf);
     const newFile = toStyle(newFileLf, style);
-    await atomicWrite(absPath, newFile, { mode: stat9.mode & 511 });
-    const updated = await fs4.stat(absPath);
+    await atomicWrite(absPath, newFile, { mode: updated.mode & 511 });
     ctx.recordRead(absPath, updated.mtimeMs);
     ctx.session.recordFileChange({
       path: absPath,
@@ -494,7 +494,12 @@ async function globNative(pattern, base, extraGlob) {
     for (const e of entries) {
       if (DEFAULT_IGNORE.includes(e.name)) continue;
       const full = path.join(dir, e.name);
-      if (e.isSymbolicLink()) continue;
+      try {
+        const stat9 = await fs4.lstat(full);
+        if (stat9.isSymbolicLink()) continue;
+      } catch {
+        continue;
+      }
       if (e.isDirectory()) {
         await walk(full);
       } else if (e.isFile()) {
@@ -1064,8 +1069,8 @@ var bashTool = {
 };
 var ALLOWED_COMMANDS = {
   node: ["--version", "-r", "--input-type=module"],
-  npm: ["--version", "init", "install", "test", "list", "pkg", "doctor"],
-  pnpm: ["--version", "init", "install", "add", "remove", "list"],
+  npm: ["--version", "list", "pkg", "doctor", "view", "outdated", "audit"],
+  pnpm: ["--version", "remove", "list", "view", "outdated", "audit"],
   npx: ["--version"],
   git: [
     "--version",
@@ -1093,7 +1098,7 @@ var ALLOWED_COMMANDS = {
   mv: [],
   rm: ["-rf"],
   touch: [],
-  bun: ["--version", "add", "init"],
+  bun: ["--version"],
   tsc: ["--version", "--noEmit", "--project"],
   vitest: ["--version", "run", "--coverage"],
   biome: ["--version", "lint", "format", "check"],
@@ -1101,7 +1106,7 @@ var ALLOWED_COMMANDS = {
   rustc: ["--version"],
   go: ["version", "run", "build", "test"],
   python: ["--version"],
-  pip: ["--version", "install", "list"],
+  pip: ["--version", "list"],
   docker: ["--version", "ps", "images"],
   kubectl: ["version", "get", "describe", "logs"]
 };
@@ -2432,7 +2437,11 @@ var DEFAULT_IGNORE4 = [
   "build",
   ".next",
   "coverage",
-  "__pycache__"
+  "__pycache__",
+  ".wrongstack",
+  ".ssh",
+  ".gnupg",
+  ".aws"
 ];
 var treeTool = {
   name: "tree",