@wrongstack/tools 0.148.0 → 0.236.0

package/dist/circuit-breaker.d.ts

@@ -86,15 +86,22 @@ declare class CircuitBreaker {
      * Call this BEFORE spawning a bash/exec process.
      * Returns true if the call is allowed; false if the breaker is open.
      * When false, callers MUST NOT spawn a process.
+     *
+     * @param bypass - If true, skip the circuit breaker check entirely.
+     *                  Use for background/fire-and-forget processes that should
+     *                  not affect breaker state.
      */
-    beforeCall(): boolean;
+    beforeCall(bypass?: boolean): boolean;
     /**
      * Call this AFTER a bash/exec process finishes (success or failure).
      * `durationMs` is the wall-clock time the process ran.
      * `failed` is true when the process returned a non-zero exit code or
      * threw an exception before spawning.
+     *
+     * @param bypass - If true, do not update breaker state.
+     *                  Use for background/fire-and-forget processes.
      */
-    afterCall(durationMs: number, failed: boolean): void;
+    afterCall(durationMs: number, failed: boolean, bypass?: boolean): void;
     /** Force the breaker open. Used by /kill force and Ctrl+C. */
     forceOpen(): void;
     /** Force a reset to closed. Used by tests and /kill reset. */

package/dist/circuit-breaker.js

@@ -62,8 +62,13 @@ var CircuitBreaker = class {
    * Call this BEFORE spawning a bash/exec process.
    * Returns true if the call is allowed; false if the breaker is open.
    * When false, callers MUST NOT spawn a process.
+   *
+   * @param bypass - If true, skip the circuit breaker check entirely.
+   *                  Use for background/fire-and-forget processes that should
+   *                  not affect breaker state.
    */
-  beforeCall() {
+  beforeCall(bypass = false) {
+    if (bypass) return true;
     this._checkStateTransition();
     if (this.state === "open") return false;
     return true;
@@ -73,8 +78,12 @@ var CircuitBreaker = class {
    * `durationMs` is the wall-clock time the process ran.
    * `failed` is true when the process returned a non-zero exit code or
    * threw an exception before spawning.
+   *
+   * @param bypass - If true, do not update breaker state.
+   *                  Use for background/fire-and-forget processes.
    */
-  afterCall(durationMs, failed) {
+  afterCall(durationMs, failed, bypass = false) {
+    if (bypass) return;
     const now = Date.now();
     if (this.state === "half-open") {
       if (failed) {

package/dist/circuit-breaker.js.map

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Default: 5.\n   * A single success resets this counter to 0.\n   */\n  maxConsecutiveFailures?: number | undefined;\n  /**\n   * Slow-call threshold in ms. A call that runs longer than this is\n   * counted as \"slow\". Default: 60_000 (1 minute).\n   */\n  slowCallThresholdMs?: number | undefined;\n  /**\n   * Max slow calls before trip (within the sliding window). Default: 3.\n   */\n  maxSlowCalls?: number | undefined;\n  /**\n   * Sliding window for rate-limit and slow-call counting, in ms.\n   * Default: 60_000 (1 minute).\n   */\n  windowMs?: number | undefined;\n  /**\n   * Max calls within the sliding window. Default: 30.\n   * Burst exceeding this trips the breaker immediately.\n   */\n  maxCallsPerWindow?: number | undefined;\n  /**\n   * Cooldown before auto-recovery attempt, in ms. Default: 30_000 (30s).\n   * After this the breaker enters \"half-open\" state and allows one call\n   * through to test whether the problem is resolved.\n   */\n  cooldownMs?: number | undefined;\n}\n\ninterface CallRecord {\n  at: number;\n  /** True if the call threw or returned an is_error result. */\n  failed: boolean;\n  /** True if elapsed time exceeded slowCallThresholdMs. */\n  slow: boolean;\n}\n\ntype BreakerState = 'closed' | 'open' | 'half-open';\n\nconst DEFAULT_MAX_CONSECUTIVE_FAILURES = 5;\nconst DEFAULT_SLOW_CALL_THRESHOLD_MS = 180_000;\n// 3 minutes — balanced against the 5-minute bash timeout. Commands\n// running <3min are normal; 3-5min are \"slow\" and count toward the\n// breaker. 3 consecutive slow calls trip the circuit.\nconst DEFAULT_MAX_SLOW_CALLS = 3;\nconst DEFAULT_WINDOW_MS = 60_000;\nconst DEFAULT_MAX_CALLS_PER_WINDOW = 30;\nconst DEFAULT_COOLDOWN_MS = 30_000;\n\nexport interface CircuitBreakerSnapshot {\n  state: 'closed' | 'open' | 'half-open';\n  consecutiveFailures: number;\n  slowCallsInWindow: number;\n  callsInWindow: number;\n  windowMs: number;\n  cooldownRemainingMs: number | null;\n  lastFailureAt: number | null;\n  lastSlowAt: number | null;\n}\n\nexport class CircuitBreaker {\n  private readonly maxConsecutiveFailures: number;\n  private readonly slowCallThresholdMs: number;\n  private readonly maxSlowCalls: number;\n  private readonly windowMs: number;\n  private readonly maxCallsPerWindow: number;\n  private readonly cooldownMs: number;\n\n  private state: BreakerState = 'closed';\n  private consecutiveFailures = 0;\n  private window: CallRecord[] = [];\n  private lastFailureAt: number | null = null;\n  private lastSlowAt: number | null = null;\n  /** Timestamp when the breaker was opened (for cooldown calculation). */\n  private openedAt: number | null = null;\n\n  constructor(config: CircuitBreakerConfig = {}) {\n    this.maxConsecutiveFailures = config.maxConsecutiveFailures ?? DEFAULT_MAX_CONSECUTIVE_FAILURES;\n    this.slowCallThresholdMs = config.slowCallThresholdMs ?? DEFAULT_SLOW_CALL_THRESHOLD_MS;\n    this.maxSlowCalls = config.maxSlowCalls ?? DEFAULT_MAX_SLOW_CALLS;\n    this.windowMs = config.windowMs ?? DEFAULT_WINDOW_MS;\n    this.maxCallsPerWindow = config.maxCallsPerWindow ?? DEFAULT_MAX_CALLS_PER_WINDOW;\n    this.cooldownMs = config.cooldownMs ?? DEFAULT_COOLDOWN_MS;\n  }\n\n  /**\n   * Returns true if the circuit allows a new call to proceed.\n   * When false, callers should abort the tool call and return a\n   * circuit-breaker error instead of spawning a process.\n   */\n  get canProceed(): boolean {\n    this._checkStateTransition();\n    return this.state !== 'open';\n  }\n\n  /**\n   * Snapshot of the current breaker state for observability (`/kill`).\n   */\n  snapshot(): CircuitBreakerSnapshot {\n    this._checkStateTransition();\n    const now = Date.now();\n    let cooldownRemaining: number | null = null;\n    if (this.openedAt !== null && this.state === 'open') {\n      const elapsed = now - this.openedAt;\n      cooldownRemaining = Math.max(0, this.cooldownMs - elapsed);\n    }\n    return {\n      state: this.state,\n      consecutiveFailures: this.consecutiveFailures,\n      slowCallsInWindow: this.window.filter((c) => c.slow).length,\n      callsInWindow: this.window.length,\n      windowMs: this.windowMs,\n      cooldownRemainingMs: cooldownRemaining,\n      lastFailureAt: this.lastFailureAt,\n      lastSlowAt: this.lastSlowAt,\n    };\n  }\n\n  /**\n   * Call this BEFORE spawning a bash/exec process.\n   * Returns true if the call is allowed; false if the breaker is open.\n   * When false, callers MUST NOT spawn a process.\n   */\n  beforeCall(): boolean {\n    this._checkStateTransition();\n    if (this.state === 'open') return false;\n    return true;\n  }\n\n  /**\n   * Call this AFTER a bash/exec process finishes (success or failure).\n   * `durationMs` is the wall-clock time the process ran.\n   * `failed` is true when the process returned a non-zero exit code or\n   * threw an exception before spawning.\n   */\n  afterCall(durationMs: number, failed: boolean): void {\n    const now = Date.now();\n\n    if (this.state === 'half-open') {\n      // First call through after cooldown — if it failed, go back to open.\n      if (failed) {\n        this._trip();\n        return;\n      }\n      // Success in half-open → reset to closed.\n      this._reset();\n      return;\n    }\n\n    // Prune old records outside the sliding window.\n    this._pruneWindow(now);\n\n    const slow = durationMs >= this.slowCallThresholdMs;\n    this.window.push({ at: now, failed, slow });\n\n    if (failed) {\n      this.consecutiveFailures++;\n      this.lastFailureAt = now;\n      if (this.consecutiveFailures >= this.maxConsecutiveFailures) {\n        this._trip();\n      }\n      return;\n    }\n\n    // Success: reset consecutive failure counter.\n    this.consecutiveFailures = 0;\n\n    if (slow) {\n      this.lastSlowAt = now;\n      const slowCount = this.window.filter((c) => c.slow).length;\n      if (slowCount >= this.maxSlowCalls) {\n        this._trip();\n      }\n    }\n\n    const callCount = this.window.length;\n    if (callCount >= this.maxCallsPerWindow) {\n      // Rate limit exceeded. This is a soft trip — we reset the window\n      // and let the next call try immediately (the caller will still see\n      // canProceed=false until the window drains naturally).\n      this._trip();\n    }\n  }\n\n  /** Force the breaker open. Used by /kill force and Ctrl+C. */\n  forceOpen(): void {\n    this._trip();\n  }\n\n  /** Force a reset to closed. Used by tests and /kill reset. */\n  forceReset(): void {\n    this._reset();\n  }\n\n  private _trip(): void {\n    if (this.state === 'open') return; // already open\n    this.state = 'open';\n    this.openedAt = Date.now();\n  }\n\n  private _reset(): void {\n    this.state = 'closed';\n    this.consecutiveFailures = 0;\n    this.window = [];\n    this.openedAt = null;\n  }\n\n  /** Transition from open → half-open when cooldown elapses. */\n  private _checkStateTransition(): void {\n    if (this.state !== 'open' || this.openedAt === null) return;\n    const elapsed = Date.now() - this.openedAt;\n    if (elapsed >= this.cooldownMs) {\n      this.state = 'half-open';\n      this.openedAt = null;\n    }\n  }\n\n  private _pruneWindow(now: number): void {\n    const cutoff = now - this.windowMs;\n    this.window = this.window.filter((c) => c.at >= cutoff);\n  }\n}"]}
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isolating them would let the model route around the\n * breaker by alternating which tool it uses.\n */\n\nexport interface CircuitBreakerConfig {\n  /**\n   * Consecutive failures before trip. Default: 5.\n   * A single success resets this counter to 0.\n   */\n  maxConsecutiveFailures?: number | undefined;\n  /**\n   * Slow-call threshold in ms. A call that runs longer than this is\n   * counted as \"slow\". Default: 60_000 (1 minute).\n   */\n  slowCallThresholdMs?: number | undefined;\n  /**\n   * Max slow calls before trip (within the sliding window). Default: 3.\n   */\n  maxSlowCalls?: number | undefined;\n  /**\n   * Sliding window for rate-limit and slow-call counting, in ms.\n   * Default: 60_000 (1 minute).\n   */\n  windowMs?: number | undefined;\n  /**\n   * Max calls within the sliding window. Default: 30.\n   * Burst exceeding this trips the breaker immediately.\n   */\n  maxCallsPerWindow?: number | undefined;\n  /**\n   * Cooldown before auto-recovery attempt, in ms. Default: 30_000 (30s).\n   * After this the breaker enters \"half-open\" state and allows one call\n   * through to test whether the problem is resolved.\n   */\n  cooldownMs?: number | undefined;\n}\n\ninterface CallRecord {\n  at: number;\n  /** True if the call threw or returned an is_error result. */\n  failed: boolean;\n  /** True if elapsed time exceeded slowCallThresholdMs. */\n  slow: boolean;\n}\n\ntype BreakerState = 'closed' | 'open' | 'half-open';\n\nconst DEFAULT_MAX_CONSECUTIVE_FAILURES = 5;\nconst DEFAULT_SLOW_CALL_THRESHOLD_MS = 180_000;\n// 3 minutes — balanced against the 5-minute bash timeout. Commands\n// running <3min are normal; 3-5min are \"slow\" and count toward the\n// breaker. 3 consecutive slow calls trip the circuit.\nconst DEFAULT_MAX_SLOW_CALLS = 3;\nconst DEFAULT_WINDOW_MS = 60_000;\nconst DEFAULT_MAX_CALLS_PER_WINDOW = 30;\nconst DEFAULT_COOLDOWN_MS = 30_000;\n\nexport interface CircuitBreakerSnapshot {\n  state: 'closed' | 'open' | 'half-open';\n  consecutiveFailures: number;\n  slowCallsInWindow: number;\n  callsInWindow: number;\n  windowMs: number;\n  cooldownRemainingMs: number | null;\n  lastFailureAt: number | null;\n  lastSlowAt: number | null;\n}\n\nexport class CircuitBreaker {\n  private readonly maxConsecutiveFailures: number;\n  private readonly slowCallThresholdMs: number;\n  private readonly maxSlowCalls: number;\n  private readonly windowMs: number;\n  private readonly maxCallsPerWindow: number;\n  private readonly cooldownMs: number;\n\n  private state: BreakerState = 'closed';\n  private consecutiveFailures = 0;\n  private window: CallRecord[] = [];\n  private lastFailureAt: number | null = null;\n  private lastSlowAt: number | null = null;\n  /** Timestamp when the breaker was opened (for cooldown calculation). */\n  private openedAt: number | null = null;\n\n  constructor(config: CircuitBreakerConfig = {}) {\n    this.maxConsecutiveFailures = config.maxConsecutiveFailures ?? DEFAULT_MAX_CONSECUTIVE_FAILURES;\n    this.slowCallThresholdMs = config.slowCallThresholdMs ?? DEFAULT_SLOW_CALL_THRESHOLD_MS;\n    this.maxSlowCalls = config.maxSlowCalls ?? DEFAULT_MAX_SLOW_CALLS;\n    this.windowMs = config.windowMs ?? DEFAULT_WINDOW_MS;\n    this.maxCallsPerWindow = config.maxCallsPerWindow ?? DEFAULT_MAX_CALLS_PER_WINDOW;\n    this.cooldownMs = config.cooldownMs ?? DEFAULT_COOLDOWN_MS;\n  }\n\n  /**\n   * Returns true if the circuit allows a new call to proceed.\n   * When false, callers should abort the tool call and return a\n   * circuit-breaker error instead of spawning a process.\n   */\n  get canProceed(): boolean {\n    this._checkStateTransition();\n    return this.state !== 'open';\n  }\n\n  /**\n   * Snapshot of the current breaker state for observability (`/kill`).\n   */\n  snapshot(): CircuitBreakerSnapshot {\n    this._checkStateTransition();\n    const now = Date.now();\n    let cooldownRemaining: number | null = null;\n    if (this.openedAt !== null && this.state === 'open') {\n      const elapsed = now - this.openedAt;\n      cooldownRemaining = Math.max(0, this.cooldownMs - elapsed);\n    }\n    return {\n      state: this.state,\n      consecutiveFailures: this.consecutiveFailures,\n      slowCallsInWindow: this.window.filter((c) => c.slow).length,\n      callsInWindow: this.window.length,\n      windowMs: this.windowMs,\n      cooldownRemainingMs: cooldownRemaining,\n      lastFailureAt: this.lastFailureAt,\n      lastSlowAt: this.lastSlowAt,\n    };\n  }\n\n  /**\n   * Call this BEFORE spawning a bash/exec process.\n   * Returns true if the call is allowed; false if the breaker is open.\n   * When false, callers MUST NOT spawn a process.\n   *\n   * @param bypass - If true, skip the circuit breaker check entirely.\n   *                  Use for background/fire-and-forget processes that should\n   *                  not affect breaker state.\n   */\n  beforeCall(bypass = false): boolean {\n    if (bypass) return true;\n    this._checkStateTransition();\n    if (this.state === 'open') return false;\n    return true;\n  }\n\n  /**\n   * Call this AFTER a bash/exec process finishes (success or failure).\n   * `durationMs` is the wall-clock time the process ran.\n   * `failed` is true when the process returned a non-zero exit code or\n   * threw an exception before spawning.\n   *\n   * @param bypass - If true, do not update breaker state.\n   *                  Use for background/fire-and-forget processes.\n   */\n  afterCall(durationMs: number, failed: boolean, bypass = false): void {\n    if (bypass) return;\n\n    const now = Date.now();\n\n    if (this.state === 'half-open') {\n      // First call through after cooldown — if it failed, go back to open.\n      if (failed) {\n        this._trip();\n        return;\n      }\n      // Success in half-open → reset to closed.\n      this._reset();\n      return;\n    }\n\n    // Prune old records outside the sliding window.\n    this._pruneWindow(now);\n\n    const slow = durationMs >= this.slowCallThresholdMs;\n    this.window.push({ at: now, failed, slow });\n\n    if (failed) {\n      this.consecutiveFailures++;\n      this.lastFailureAt = now;\n      if (this.consecutiveFailures >= this.maxConsecutiveFailures) {\n        this._trip();\n      }\n      return;\n    }\n\n    // Success: reset consecutive failure counter.\n    this.consecutiveFailures = 0;\n\n    if (slow) {\n      this.lastSlowAt = now;\n      const slowCount = this.window.filter((c) => c.slow).length;\n      if (slowCount >= this.maxSlowCalls) {\n        this._trip();\n      }\n    }\n\n    const callCount = this.window.length;\n    if (callCount >= this.maxCallsPerWindow) {\n      // Rate limit exceeded. This is a soft trip — we reset the window\n      // and let the next call try immediately (the caller will still see\n      // canProceed=false until the window drains naturally).\n      this._trip();\n    }\n  }\n\n  /** Force the breaker open. Used by /kill force and Ctrl+C. */\n  forceOpen(): void {\n    this._trip();\n  }\n\n  /** Force a reset to closed. Used by tests and /kill reset. */\n  forceReset(): void {\n    this._reset();\n  }\n\n  private _trip(): void {\n    if (this.state === 'open') return; // already open\n    this.state = 'open';\n    this.openedAt = Date.now();\n  }\n\n  private _reset(): void {\n    this.state = 'closed';\n    this.consecutiveFailures = 0;\n    this.window = [];\n    this.openedAt = null;\n  }\n\n  /** Transition from open → half-open when cooldown elapses. */\n  private _checkStateTransition(): void {\n    if (this.state !== 'open' || this.openedAt === null) return;\n    const elapsed = Date.now() - this.openedAt;\n    if (elapsed >= this.cooldownMs) {\n      this.state = 'half-open';\n      this.openedAt = null;\n    }\n  }\n\n  private _pruneWindow(now: number): void {\n    const cutoff = now - this.windowMs;\n    this.window = this.window.filter((c) => c.at >= cutoff);\n  }\n}"]}

package/dist/codebase-index/index.d.ts

@@ -1,5 +1,5 @@
-import { I as IndexResult, S as Symbol, F as FileMeta, a as SymbolKind, b as SymbolLang, c as SearchResult, d as IndexStats, R as Ref } from '../background-indexer-C2014mH0.js';
-export { e as FileSymbols, f as SCHEMA_VERSION, g as cancelPendingReindexes, h as codebaseIndexTool, i as codebaseSearchTool, j as codebaseStatsTool, k as enqueueReindex, l as getIndexState, m as isIndexReady, n as isIndexableFile, o as isIndexing, p as onIndexStateChange, r as runStartupIndex } from '../background-indexer-C2014mH0.js';
+import { I as IndexResult, S as Symbol, F as FileMeta, a as SymbolKind, b as SymbolLang, c as SearchResult, d as IndexStats, R as Ref } from '../background-indexer-CtbgPExj.js';
+export { e as FileSymbols, f as SCHEMA_VERSION, g as cancelPendingReindexes, h as codebaseIndexTool, i as codebaseSearchTool, j as codebaseStatsTool, k as enqueueReindex, l as getIndexState, m as isIndexReady, n as isIndexableFile, o as isIndexing, p as onIndexStateChange, r as runStartupIndex } from '../background-indexer-CtbgPExj.js';
 import { Context } from '@wrongstack/core';
 
 interface IndexerOptions {
@@ -10,6 +10,13 @@ interface IndexerOptions {
     ignore?: string[] | undefined;
     /** Override the index directory (default: the global per-project dir). */
     indexDir?: string | undefined;
+    /**
+     * Signal that cancels indexing cooperatively. Polled at yield points
+     * (file walk, per-file loop) so a hung filesystem won't lock up the
+     * process. When the tool executor's timeout fires, this signal aborts
+     * and `runIndexer` throws, releasing the mutex and resetting flags.
+     */
+    signal?: AbortSignal | undefined;
 }
 /** Run a full or incremental index and return statistics. */
 declare function runIndexer(_ctx: Context, opts: IndexerOptions): Promise<IndexResult>;

package/dist/codebase-index/index.js

@@ -1733,18 +1733,19 @@ function isIndexableFile(filePath) {
 }
 async function runStartupIndex(opts) {
   _indexing = true;
-  _currentFile = 0;
-  _totalFiles = 0;
-  _lastError = null;
   emitState();
   try {
-    const result = await withMutex(
-      () => runIndexer(stubCtx(opts.projectRoot), {
+    const result = await withMutex(() => {
+      _currentFile = 0;
+      _totalFiles = 0;
+      _lastError = null;
+      return runIndexer(stubCtx(opts.projectRoot), {
         projectRoot: opts.projectRoot,
         indexDir: opts.indexDir,
-        force: opts.force
-      })
-    );
+        force: opts.force,
+        signal: opts.signal
+      });
+    });
     _ready = true;
     return result;
   } catch (err) {
@@ -1788,6 +1789,16 @@ var YIELD_EVERY_N = 50;
 function yieldEventLoop() {
   return new Promise((resolve2) => setImmediate(resolve2));
 }
+function throwIfAborted(signal) {
+  if (!signal?.aborted) return;
+  if (signal.reason instanceof Error) throw signal.reason;
+  throw new Error(
+    typeof signal.reason === "string" ? signal.reason : "Indexing cancelled"
+  );
+}
+function isAbortError(err) {
+  return err instanceof DOMException && err.name === "AbortError";
+}
 var DEFAULT_IGNORE = [
   "node_modules",
   ".git",
@@ -1799,7 +1810,7 @@ var DEFAULT_IGNORE = [
   "__snapshots__",
   ".nyc_output"
 ];
-async function findSourceFiles(projectRoot, ignore, isGitIgnored) {
+async function findSourceFiles(projectRoot, ignore, isGitIgnored, signal) {
   const results = [];
   const ignoreSet = /* @__PURE__ */ new Set([...DEFAULT_IGNORE, ...ignore]);
   const globs = [
@@ -1814,13 +1825,20 @@ async function findSourceFiles(projectRoot, ignore, isGitIgnored) {
     { ext: ".yaml", pat: compileGlob("**/*.yaml") },
     { ext: ".yml", pat: compileGlob("**/*.yml") }
   ];
+  let dirCount = 0;
   const walk = async (dir) => {
+    throwIfAborted(signal);
+    if (dirCount > 0 && dirCount % YIELD_EVERY_N === 0) {
+      await yieldEventLoop();
+      throwIfAborted(signal);
+    }
     let entries;
     try {
       entries = await fs3.readdir(dir, { withFileTypes: true });
     } catch {
       return;
     }
+    dirCount++;
     for (const e of entries) {
       if (ignoreSet.has(e.name)) continue;
       const full = path4.join(dir, e.name);
@@ -1865,8 +1883,18 @@ async function parseFile(file, content, lang) {
   }
 }
 async function runIndexer(_ctx, opts) {
-  const { projectRoot, force = false, langs, ignore = [], indexDir } = opts;
-  const store = new IndexStore(projectRoot, { indexDir });
+  const store = new IndexStore(opts.projectRoot, { indexDir: opts.indexDir });
+  try {
+    return await runIndexerWithStore(store, opts);
+  } finally {
+    try {
+      store.close();
+    } catch {
+    }
+  }
+}
+async function runIndexerWithStore(store, opts) {
+  const { projectRoot, force = false, langs, ignore = [], signal } = opts;
   const startMs = Date.now();
   const errors = [];
   const langStats = {};
@@ -1877,7 +1905,7 @@ async function runIndexer(_ctx, opts) {
   if (opts.files && opts.files.length > 0) {
     files = opts.files.map((f) => path4.resolve(projectRoot, f)).filter((f) => !isGitIgnored(path4.relative(projectRoot, f).replace(/\\/g, "/"), false));
   } else {
-    files = await findSourceFiles(projectRoot, ignore, isGitIgnored);
+    files = await findSourceFiles(projectRoot, ignore, isGitIgnored, signal);
   }
   if (langs && langs.length > 0) {
     const langSet = new Set(langs);
@@ -1896,11 +1924,14 @@ async function runIndexer(_ctx, opts) {
     _setIndexProgress(fi + 1, files.length);
     if (fi > 0 && fi % YIELD_EVERY_N === 0) {
       await yieldEventLoop();
+      throwIfAborted(signal);
     }
     let stat2;
     try {
-      stat2 = await fs3.stat(file);
-    } catch {
+      const statOpts = signal ? { signal } : {};
+      stat2 = await fs3.stat(file, statOpts);
+    } catch (e) {
+      if (isAbortError(e)) throw e;
       store.deleteFile(file);
       continue;
     }
@@ -1918,8 +1949,9 @@ async function runIndexer(_ctx, opts) {
     store.deleteSymbolsForFile(file);
     let content;
     try {
-      content = await fs3.readFile(file, "utf8");
+      content = await fs3.readFile(file, { encoding: "utf8", signal });
     } catch (e) {
+      if (isAbortError(e)) throw e;
       errors.push(`read error: ${file}: ${e instanceof Error ? e.message : String(e)}`);
       continue;
     }
@@ -1975,7 +2007,6 @@ async function runIndexer(_ctx, opts) {
   }
   const durationMs = Date.now() - startMs;
   store.setLastIndexed(Date.now());
-  store.close();
   return {
     filesIndexed,
     symbolsIndexed,
@@ -2009,7 +2040,7 @@ var codebaseIndexTool = {
       }
     }
   },
-  async execute(input, ctx) {
+  async execute(input, ctx, execOpts) {
     if (isIndexing()) {
       return {
         filesIndexed: 0,
@@ -2024,7 +2055,8 @@ var codebaseIndexTool = {
       projectRoot: ctx.projectRoot,
       force: input.force ?? false,
       langs: input.langs,
-      indexDir: codebaseIndexDirOverride(ctx)
+      indexDir: codebaseIndexDirOverride(ctx),
+      signal: execOpts?.signal
     });
     setIndexReady();
     return result;